BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1016
(718 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1
PE=1 SV=2
Length = 908
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/380 (80%), Positives = 332/380 (87%), Gaps = 5/380 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPAFFRWLSRKYPSVI+ C E+K + + G+ I D + PNPNG+EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPCTHPEDKPAPK+EDEMMVAIFECIDRLF IVRPRKLLYMAIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
RA+KET EK E+ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM RLS CLHY++
Sbjct: 121 RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV 180
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
HDR NN+P WKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQH LCGADADLIM
Sbjct: 181 HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM 240
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDA----EPNPESVITFGSE 295
LGLATHEPNFTIIREEF PN+ RPCD+C GHEM +CVGL A N + + G+E
Sbjct: 241 LGLATHEPNFTIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAE 300
Query: 296 VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
V+FIFVRLSVLREYL++ L MPNLPF YSFERALDDWVFMCFFVGNDFLPHLPSLEIREG
Sbjct: 301 VKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 360
Query: 356 AVDRLVNLYKKTVYKTQEQL 375
AVDRLV LYKK VYKT+ L
Sbjct: 361 AVDRLVELYKKCVYKTRGYL 380
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 67/85 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWEDGFKDRYYESKFDV + FR V +YV GLCWVLKYYYQGC SW WYFP+HY
Sbjct: 488 VRLWEDGFKDRYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHY 547
Query: 468 APFASDFINIAEVDTNFETGTQPVN 492
APFASDF+NI + T FE GT+P N
Sbjct: 548 APFASDFVNIQGLSTMFEKGTKPFN 572
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%), Gaps = 5/97 (5%)
Query: 623 QQTETMFKMRNKMKKRRERQMKM--AAQSTKAPSFIPGGQF-APQDSPIIDFYPEDFKID 679
Q TMF+ K E+ M + AA S+ P P + + +SPIIDFYPEDFKID
Sbjct: 558 QGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPE--PWAKLMSDPESPIIDFYPEDFKID 615
Query: 680 LNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
LNGKKFAWQGVALLPFVDE+RL KAL PYY++L+ EE
Sbjct: 616 LNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEE 652
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LTDSGDV L+RVQLIM DLG ED+IFK RQ+ E FK R+K +KR+ER + +
Sbjct: 378 GYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQ 437
Query: 651 KA 652
A
Sbjct: 438 SA 439
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1
Length = 951
Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/375 (76%), Positives = 318/375 (84%), Gaps = 5/375 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGS----EV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + S E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPFP+ ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Query: 387 GVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLC 446
G+KR +D D E E D VRLWE G+K RYY++KFDV D FR V YV GLC
Sbjct: 491 GIKRKAEDSDSEPEPE---DNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLC 547
Query: 447 WVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQP 490
WVL+YYYQGC SWKWY+PFHYAPFASDF IA++ + FE GT+P
Sbjct: 548 WVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMSSEFEKGTKP 591
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEEN 674
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E F+ ++ K
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRR--------RQKEKRKRMKR 427
Query: 651 KAPSFIPGGQFAPQ 664
P+F P G P
Sbjct: 428 DQPAFTPSGILTPH 441
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1
Length = 950
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/375 (75%), Positives = 316/375 (84%), Gaps = 5/375 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGS----EV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + S E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 75/104 (72%), Gaps = 3/104 (2%)
Query: 387 GVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLC 446
G+KR +D D E E D VRLWE G+K RYY++KFDV D FR V YV GLC
Sbjct: 491 GIKRKAEDSDSEPEPE---DNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLC 547
Query: 447 WVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQP 490
WVL+YYYQGC SWKWY+PFHYAPFASDF IA++ ++FE GT+P
Sbjct: 548 WVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKP 591
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 674
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E F+ ++ K
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRR--------RQKEKRKRMKR 427
Query: 651 KAPSFIPGGQFAPQ 664
P+F P G P
Sbjct: 428 DQPAFTPSGILTPH 441
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1
Length = 950
Score = 590 bits (1521), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/375 (75%), Positives = 316/375 (84%), Gaps = 5/375 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGS----EV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + S E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Query: 387 GVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLC 446
G+KR +D D E E D VRLWE G+K RYY++KFD D FR V YV GLC
Sbjct: 491 GIKRKAEDSDSEPEPE---DNVRLWEAGWKQRYYKNKFDADAADEKFRRKVVQSYVEGLC 547
Query: 447 WVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQP 490
WVL+YYYQGC SWKWY+PFHYAPFASDF IA++ ++FE GT+P
Sbjct: 548 WVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKP 591
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 674
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E F+ ++ K
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRR--------RQKEKRKRMKR 427
Query: 651 KAPSFIPGGQFAPQ 664
P+F P G P
Sbjct: 428 DQPAFTPSGILTPH 441
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1
Length = 949
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 280/375 (74%), Positives = 317/375 (84%), Gaps = 5/375 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+K +E NG K D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDR+F IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E +IR+++LA G ILPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAEEKQKIRQEILAKGGILPPEEVK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLN+DPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPE----SVITFGSEV 296
GLATHEP+FTIIREEFKPN+ +PC +C QMGHE+K+C GL E + + SE
Sbjct: 240 GLATHEPHFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQ 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL VLREYLE+EL M +LPF + FER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 385 GRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLG 444
RG+KR +D D E E D +RLWE G+K RYY++KFDV D FR V YV G
Sbjct: 488 ARGIKRKSEDSDSEPEPE---DNIRLWESGWKQRYYKNKFDVDASDEKFRRKVVQSYVEG 544
Query: 445 LCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQP 490
LCWVL+YYYQGC SW WY+PFHYAPFASDF IA++ ++FE G++P
Sbjct: 545 LCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKP 590
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
+S IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 621 ESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEEN 673
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ + FK ++ K
Sbjct: 376 GYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKR--------RQKEKKKRMKR 427
Query: 651 KAPSFIPGGQFAPQ 664
PSFIPGGQF+PQ
Sbjct: 428 DHPSFIPGGQFSPQ 441
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2
PE=3 SV=2
Length = 975
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/385 (68%), Positives = 312/385 (81%), Gaps = 12/385 (3%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWL++KYP+ +V+ ED+ ++ +G ++P D ++PNPN EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPED+PAPK+EDEM IFE IDR++ IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE AEK A + R +L+A+G +PP+K++ +HFDSNCITPGTPFMARL+ L YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DR+ ND W I++ILSDANVPGEGEHKIMDY+RKQR P HDPNT HCLCGADADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPN-------PESVITFG 293
G+ATHE NF IIREEF PNQ R CD+CGQ GHE+KEC G + E + PE
Sbjct: 241 GIATHEANFNIIREEFVPNQPRACDLCGQYGHELKECRGAENETDLGDDYCKPEQ----- 295
Query: 294 SEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIR 353
E FIF+R+ VLREYLEKEL+MPNLPF + ERALDDWVF+CFFVGNDFLPHLPSLEIR
Sbjct: 296 REKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIR 355
Query: 354 EGAVDRLVNLYKKTVYKTQEQLRQE 378
EGA+DRL+ LYK+ VY+ + L ++
Sbjct: 356 EGAIDRLIKLYKEMVYQMKGYLTKD 380
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 68/96 (70%)
Query: 397 ESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGC 456
E E+E D++RL+E G+KDRYY +KFDV DDI FR V YV GLCWVL+YYYQGC
Sbjct: 524 EEEEDEGPKDDIRLYESGWKDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGC 583
Query: 457 RSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVN 492
SW WYFP+HYAPFASDF + E +F T+P N
Sbjct: 584 ASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFN 619
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 41/54 (75%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
DSPIID YP DF+IDLNGKK+AWQGVALLPFVDE RL L Y L+ EE +
Sbjct: 648 DSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 701
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 581 KLFSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRR 639
KL+ M+ G+LT G +L+RV++IM+ LG +EDEIFK+RQQ E F+ + KK R
Sbjct: 364 KLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQENQRNKKAR 423
Query: 640 ERQMKM-----------AAQSTKAPSFIPG-GQFAPQDSPI 668
M+M + P+F+P G AP +P+
Sbjct: 424 ---MQMYGGGGRGGRGRGRGRGQQPAFVPTHGILAPMAAPM 461
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2
PE=3 SV=2
Length = 976
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/382 (69%), Positives = 312/382 (81%), Gaps = 4/382 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWL++KYP+ +V+ ED+ + V+G+++P D ++PNPN EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPED+PAPK+EDEM IFE IDR+F IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEK--EKGSHFDSNCITPGTPFMARLSACLHYY 178
ASKE AEK A + R +L+A+G +P +K E+ +HFDSNCITPGTPFMARL+ L YY
Sbjct: 121 ASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYY 180
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
IHDR+ NDP W I++ILSDANVPGEGEHKIMDYIRKQR P HDPNT HCLCGADADLI
Sbjct: 181 IHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLI 240
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGL--DAEPNPESVITFGSEV 296
MLG+ATHE NF IIREEF PNQ R C++CGQ GHE+KEC G D + E E
Sbjct: 241 MLGIATHEANFNIIREEFVPNQPRACELCGQYGHELKECRGAENDTDLGDEYCKPEQREK 300
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
FIF+R+ VLREYLEKE+AMPNLPF ++ ERALDDWVF+CFFVGNDFLPHLPSLEIREGA
Sbjct: 301 NFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSLEIREGA 360
Query: 357 VDRLVNLYKKTVYKTQEQLRQE 378
+DRL+ LYK+ VY+ + L ++
Sbjct: 361 IDRLIKLYKEMVYEMKGYLTKD 382
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 69/95 (72%)
Query: 398 SSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR 457
+ E+EE D++RL+E G+K+RYY +KFDV DD+ FR V YV GLCWVL+YYYQGC
Sbjct: 526 TDEDEEPKDDIRLYESGWKERYYRAKFDVGSDDVDFRHRVAWAYVEGLCWVLRYYYQGCS 585
Query: 458 SWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVN 492
SW WYFP+HYAPFASDF + E +F T+P N
Sbjct: 586 SWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPFN 620
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+SPIID YP DF+IDLNGKK+AWQGVALLPFVDE+RL + L Y L+ EE
Sbjct: 649 ESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEE 700
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 581 KLFSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRR 639
KL+ M+ G+LT G +L+RV++IM+ LG +EDEIFK+RQQ E FK K KK R
Sbjct: 366 KLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDEERFKENQKNKKAR 425
Query: 640 ERQ----MKMAAQSTKAPSFIPG-GQFAPQDSPI 668
+Q + P+++P G AP +P+
Sbjct: 426 MQQYGRGRGGRGRGRGQPAYVPSHGILAPMSAPM 459
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 266/526 (50%), Positives = 347/526 (65%), Gaps = 47/526 (8%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPAF+RWL+ +YP I VE++P + G IP D ++PNPNG EFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPE KPAP D++ ++FE ID LF +VRPRK+LY+AIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
RA+K+ AE AE R+R+ +G IL KEK DSN ITPGTPFMA LS L YYI
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQIL-SAKEKAETCDSNVITPGTPFMAILSVALQYYI 179
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
RLN++PGW+ +KVILSD+NVPGEGEHKIM YIR QR P DPNT+HCL G DADLIM
Sbjct: 180 QSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
Query: 240 LGLATHEPNFTIIREEFK-PNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
L LATHE +F+I+RE P Q C VCGQ GH +C G N + I + ++
Sbjct: 240 LSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAADIPIHKK-KY 298
Query: 299 IFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVD 358
F+ + VLREYL+ ELA+P+ PF +FER +DD+VF+CFFVGNDFLPH+P+LEIREGA++
Sbjct: 299 QFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAIN 358
Query: 359 RLVNLYKK-------------------------TVYKTQEQLRQEENGGGGGRGVKRSFD 393
L+++Y+K V ++++ Q+ +K+S D
Sbjct: 359 LLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRT------RIKQSMD 412
Query: 394 DVDESSEE----------EESNDEVRLWEDGFKDRYYESKFDV--PKDDIAFRLMVGHEY 441
+ +E + E +D+++L E G+K+RYY KF P++ + + +Y
Sbjct: 413 NNEEMKQRSRRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKY 472
Query: 442 VLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETG 487
V GLCWV +YYYQG SW+W++P+HYAPFASD N+ +++ F G
Sbjct: 473 VEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIG 518
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
SPI+ FYP DF++D+NGK+FAWQG+A LPF++E+ L A E L+VEE +
Sbjct: 552 SPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQ 604
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRER 641
G+LTDSG+V L+RV+ +Q + + ED+IF+KR + + +MK+R R
Sbjct: 373 GYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQRSRR 423
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3
SV=4
Length = 1058
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/377 (58%), Positives = 281/377 (74%), Gaps = 10/377 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPA FRWLS KYP +I +E+ P EVNG++IP D +KPNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEELPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPE KP P +E EMMV IF+ DR+ +VRPRKLL +A+DGVAPRAKMNQQR+RRFR
Sbjct: 61 PCTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFR 120
Query: 121 ASKETAEKIAEVARIREKLLA--DGCILPPEKEK---GSHFDSNCITPGTPFMARLSACL 175
+++E E + R K+LA +G + E ++ +DSN ITPGTPFM L+A L
Sbjct: 121 SAQEAKEADEKKEEFR-KMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAASL 179
Query: 176 HYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADA 235
Y+I +LN DP W+ +K+I+SDA VPGEGEHKIM++IR QRA P+HDPNT+H + G DA
Sbjct: 180 RYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDA 239
Query: 236 DLIMLGLATHEPNFTIIREE--FKPNQARPCDVCGQMGHEMKECVGLDAEPNPE-SVITF 292
DLIMLGLATHEP+F ++RE+ F+ ++AR C +CGQ GH+ +EC G E N E
Sbjct: 240 DLIMLGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEKNGEFDEKQK 299
Query: 293 GSEVE-FIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLE 351
GS ++ FI++ +S+LREYL EL +P+ PFP+ ERALDDWVFMCFFVGNDFLPHLPSL+
Sbjct: 300 GSSLKPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLD 359
Query: 352 IREGAVDRLVNLYKKTV 368
IRE +D L+ +++ +
Sbjct: 360 IRENGIDTLIAIWRDNI 376
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 62/91 (68%)
Query: 398 SSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR 457
+ E+E D VRLWE+G+ DRYYE KF V D FR V Y GL WVL YY+QGC
Sbjct: 587 AKEDELPPDTVRLWEEGYADRYYEQKFGVDPQDKEFRHKVARAYAEGLAWVLLYYFQGCP 646
Query: 458 SWKWYFPFHYAPFASDFINIAEVDTNFETGT 488
SW WY+P+HYAPFA+DF++I +++ F+ G
Sbjct: 647 SWTWYYPYHYAPFAADFVDIGDMEITFDKGV 677
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPEDF +DLNGKKFAWQGV LLPF+DE+RL A+ Y L+ +E
Sbjct: 709 DSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLTEDE 760
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LT+ G V L+R QLI+Q L ED IF++R+Q E K+ N +KRR+++ K +
Sbjct: 381 GYLTEDGHVDLKRAQLILQGLAKQEDAIFRRRRQAEER-KLAN--EKRRKQEAKAREEER 437
Query: 651 KAPSFIPGGQFAPQDSPI 668
+ P DSP+
Sbjct: 438 ARKRRRSSPTYEPMDSPV 455
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=rat1 PE=3 SV=3
Length = 1035
Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/382 (55%), Positives = 279/382 (73%), Gaps = 22/382 (5%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPA FRWLS KYP +I +E++P EVNG++IP D+++PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEQIPVDTTRPNPNGEELDNLYLDMNGIVH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPE KP P +E EMM+ IF DR+ +VRPRKLL +A+DGVAPRAKMNQQR+RRFR
Sbjct: 61 PCTHPEGKPPPANEQEMMLEIFNYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSH----------FDSNCITPGTPFMAR 170
+++E E + R++ L +K KG +DSN ITPGTPFM
Sbjct: 121 SAQEAKEADEKKEEFRKQFL--------KKSKGDQEIHEEVIQKTWDSNVITPGTPFMDI 172
Query: 171 LSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCL 230
L+A L Y+I +LN DP W+ +K+I+SDA VPGEGEHKIM+++R QRA P+HDPNT+H +
Sbjct: 173 LAASLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFVRSQRAAPEHDPNTRHVI 232
Query: 231 CGADADLIMLGLATHEPNFTIIREE--FKPNQARPCDVCGQMGHEMKECVGLDAEPNPE- 287
G DADLIMLGLATHEP+F ++RE+ F+ ++AR C +CGQ GH+ +EC G E N +
Sbjct: 233 YGLDADLIMLGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNGQF 292
Query: 288 SVITFGSEVE-FIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPH 346
G+ ++ FI++ +S+LREYL EL +P+ PFP+ ERALDDWVFMCFFVGNDFLPH
Sbjct: 293 DEKGKGTSLKPFIWLNVSILREYLAVELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPH 352
Query: 347 LPSLEIREGAVDRLVNLYKKTV 368
LPSL+IRE +D L+ +++ +
Sbjct: 353 LPSLDIRENGIDTLIAIWRDNI 374
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 64/91 (70%)
Query: 398 SSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR 457
S ++E D VRLWE+G+ DRYYE KF V D FR V Y GL WVL YY+QGC
Sbjct: 575 SKDDEMPPDTVRLWEEGYADRYYEQKFGVDPQDKEFRHKVARAYAEGLAWVLLYYFQGCP 634
Query: 458 SWKWYFPFHYAPFASDFINIAEVDTNFETGT 488
SW WY+P+HYAPFA+DF++I +++ +FE GT
Sbjct: 635 SWNWYYPYHYAPFAADFVDIGDMELSFEKGT 665
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+S IIDFYPEDF +DLNGKKFAWQGV LLPF+DE+RL A+ Y LS +E
Sbjct: 697 ESEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLSDDE 748
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRE 640
G+LT G V+ ++ QLI+Q L ED IF++R+Q E K+ N+ +++ E
Sbjct: 379 GYLTKDGHVEFKKAQLILQGLAKQEDAIFRRRRQVEEK-KLANEKRRKEE 427
>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3
SV=3
Length = 1032
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 277/375 (73%), Gaps = 7/375 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPA FRWLS+KYP +I +E+ PQEVNG++IP D + PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSKKYPKIISSVIEELPQEVNGEEIPVDITGPNPNGEEMDNLYLDMNGIVH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPE KP P +E EMM+ IF+ DR+ +VRPRKLL +A+DGVAPRAKMNQQR+RRFR
Sbjct: 61 PCTHPEGKPPPANEQEMMIEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFR 120
Query: 121 ASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHY 177
+++E EK E R+ K D + E+ +DSN ITPGTPFM L+A L Y
Sbjct: 121 SAQEAREQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGTPFMDILAASLRY 180
Query: 178 YIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADL 237
+I +LN DP W+ +K+I+SDA VPGEGEHKIM++IR QRA P+HDPN +H + G DADL
Sbjct: 181 WIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRASPEHDPNARHVIYGLDADL 240
Query: 238 IMLGLATHEPNFTIIREE--FKPNQARPCDVCGQMGHEMKECVGLDAEPNPE-SVITFGS 294
IMLGLATHEP+F ++RE+ F+ ++ R C +CGQ GH+ +EC G E N E G+
Sbjct: 241 IMLGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQAKEKNGEFDEKGKGA 300
Query: 295 EVE-FIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIR 353
++ FI++ +S+LREYL EL +P+ PFP+ ERALDDWVFMCFFVGNDFLPHLPSL+IR
Sbjct: 301 TLKPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIR 360
Query: 354 EGAVDRLVNLYKKTV 368
E +D L+ +++ +
Sbjct: 361 EDGIDTLIAIWRDNI 375
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%)
Query: 393 DDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYY 452
D + + +E D VRLWE+G+ DRYYE KF V D FR V Y GL WVL YY
Sbjct: 565 DKPEPAKADELPPDTVRLWEEGYADRYYEQKFGVDPQDKEFRHKVARAYAEGLAWVLLYY 624
Query: 453 YQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGT 488
+QGC SW WY+P+HYAPFA+DF++I +++ +FE GT
Sbjct: 625 FQGCPSWTWYYPYHYAPFAADFVDIGDMELSFEKGT 660
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPEDF +DLNGKKFAWQGV LLPF+DE+RL A++ Y L+ +E
Sbjct: 692 DSEIIDFYPEDFPVDLNGKKFAWQGVVLLPFIDEKRLLAAMSKKYPLLTEDE 743
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G+LT G V L++ QLI+Q L ED IF++R+Q E K+ N+ ++++E + + ++
Sbjct: 380 GYLTQDGRVDLKKAQLILQGLAKQEDAIFRRRRQAEER-KLANEKRRKQEEKARNEERAR 438
Query: 651 K----APSF 655
K +PS+
Sbjct: 439 KRRRSSPSY 447
>sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rat-1
PE=3 SV=3
Length = 1072
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/380 (56%), Positives = 270/380 (71%), Gaps = 15/380 (3%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MG+PA FRWLS KYP +I +ED+P + +G IP D++KPNPNG EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIV 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC+HPED+PAPKDE+EMMV +F+ DR+ +VRPRKLL +A+DGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGC----ILPPEKEKGSHFDSNCITPGTPFMARLSACL 175
RA++E EK + + E L P E FDSN ITPGTPFM L+A L
Sbjct: 121 RAAREAMEKEEDKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTPFMDILAASL 180
Query: 176 HYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADA 235
Y+ +LN DP W IKVI+SDA VPGEGEHKIM+++R QR P+HDPNT+H + G DA
Sbjct: 181 RYWCSYKLNTDPAWANIKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDA 240
Query: 236 DLIMLGLATHEPNFTIIREEFKPNQARP--CDVCGQMGHEMKECVGLDAEPNPE-----S 288
DLIMLGLATHEP+F ++RE+ +RP C +CGQ GH+ C G E N E +
Sbjct: 241 DLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEKDA 300
Query: 289 VITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLP 348
V+ FI++ +S+LREYL EL +P LPF ++ ERA+DDWVFMCFFVGNDFLPHLP
Sbjct: 301 VVPLKP---FIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLP 357
Query: 349 SLEIREGAVDRLVNLYKKTV 368
+LEIRE +D L ++K +
Sbjct: 358 ALEIRENGIDTLTAIWKDNL 377
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 387 GVKRSFDDVDESSEEE-ESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGL 445
G + S +V E SE + E D VRLWE+G+ DRYYE KF V + DI FR VG Y GL
Sbjct: 558 GPEASSTEVTEISESDAEPTDSVRLWEEGYADRYYEQKFKVDRKDIDFRHKVGRAYAEGL 617
Query: 446 CWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETG 487
WVL+YY+QGC SW+W++P+HYAPFA+DF+++ +++ FE G
Sbjct: 618 AWVLEYYFQGCPSWEWFYPYHYAPFAADFVDLGKMEIKFEKG 659
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+ S I FYP+DF+IDLNGKK AWQGVALLPF+D RL A+ LS E+
Sbjct: 691 ETSEIRHFYPDDFEIDLNGKKMAWQGVALLPFIDMPRLLAAMETKSHLLSPED 743
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQT----ETMFKMR---NKMKKRR---E 640
G+LT G LERVQ IM L ED IF++R++T E FK R ++ ++RR
Sbjct: 382 GYLTKDGHADLERVQYIMAGLAKQEDAIFRRRKETEDRREAGFKRRKLADEARQRRAQGS 441
Query: 641 RQMKMAAQSTKAPS 654
RQ++ AA+++ P+
Sbjct: 442 RQIRQAAENSGPPA 455
>sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3
Length = 980
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 275/377 (72%), Gaps = 9/377 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MG+PA FRWLS +YP +I +ED+P + +G IP D+++PNPNG EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTRYPKIISPVIEDQPLVMEDGSTIPVDTTRPNPNGEEFDNLYLDMNGIV 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC+HPED+PAPKDE+EMM+ +F DR+ +VRPRK+L +A+DGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPKDEEEMMMEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAE----VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACL 175
R+++E EK + + ++++ + E FDSN ITPGTPFM L+ L
Sbjct: 121 RSAQEAQEKEQDKQELIKMLKQQNGGNLSTESLETVTKKAFDSNSITPGTPFMDILALSL 180
Query: 176 HYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADA 235
Y+ +LN DPGW +K+I+SDA VPGEGEHKIM+++R QRA PDHDPNT+H + G DA
Sbjct: 181 RYWCQYKLNTDPGWAKLKIIISDATVPGEGEHKIMNFVRSQRASPDHDPNTRHVIYGLDA 240
Query: 236 DLIMLGLATHEPNFTIIREE--FKPNQARPCDVCGQMGHEMKECVGLDAEPNPE-SVITF 292
DLIMLGLATHEP+F ++RE+ F+ +AR C +CGQ GH+ + C G + + + E
Sbjct: 241 DLIMLGLATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKKDGEHDEKDK 300
Query: 293 GSEVE-FIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLE 351
G ++ FI++ ++VLREYL EL +PNLPF + ERA+DDW+FMC FVGNDFLPHLP+LE
Sbjct: 301 GVALKPFIWLHVAVLREYLAVELGVPNLPFRFDLERAVDDWIFMCCFVGNDFLPHLPALE 360
Query: 352 IREGAVDRLVNLYKKTV 368
IRE +D L ++K +
Sbjct: 361 IREHGIDTLTKIWKDNL 377
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 67/90 (74%)
Query: 398 SSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR 457
+S EE D+VRLWEDG+ DRYYE KF DI FR VG YV GL WVL YY+QGC
Sbjct: 552 TSAEEGPVDDVRLWEDGYADRYYEKKFHKDPKDIEFRHGVGRAYVEGLAWVLLYYFQGCP 611
Query: 458 SWKWYFPFHYAPFASDFINIAEVDTNFETG 487
SW+WY+P+HYAPFA+DF +IA+++ +FE G
Sbjct: 612 SWEWYYPYHYAPFAADFKDIAKMNISFEKG 641
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
+S IIDFYPEDF+IDLNGKKFAWQGVALLPF++ RL A+ Y +LS +S
Sbjct: 674 ESNIIDFYPEDFEIDLNGKKFAWQGVALLPFIEMPRLLAAVQSKYPELSAADS 726
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE-------TMFKMRNKMKKRRERQ 642
G++T G + LER Q+I+ L ED IFK+R++ E K++N++ R RQ
Sbjct: 382 GYVTKDGHIDLERAQVILDGLAQQEDNIFKRRKEQEDRREANFKRRKLQNEVNGRGGRQ 440
>sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 /
CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1
PE=3 SV=3
Length = 1039
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/387 (54%), Positives = 275/387 (71%), Gaps = 28/387 (7%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MG+PA FRWLS KYP +I VE+K + +G +P D+++PNPNG EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVVEEKALVMEDGTVVPVDATQPNPNGEEFDNLYLDMNGIV 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAI-DGVAPRAKMNQQRSRR 118
HPC+HPED+PAP DE+EMMV +F+ +R+ +VRPRKLL +A+ DGVAPRAKMNQQRSRR
Sbjct: 61 HPCSHPEDRPAPSDEEEMMVEVFKYTERVVNMVRPRKLLMIAVADGVAPRAKMNQQRSRR 120
Query: 119 FRASKETAEKIAEVARIREKLLADGCILPPEKEKGS-------------HFDSNCITPGT 165
FRA+++ EK + ++ + L +KEKGS FDSN ITPGT
Sbjct: 121 FRAAQDAKEKEEDKQQLLKML---------QKEKGSTAKEEPIETVVKKAFDSNSITPGT 171
Query: 166 PFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPN 225
PFM L+A L Y+ +LN DP W +KVI+SDA VPGEGEHKIM+++R QR P+HDPN
Sbjct: 172 PFMDILAASLRYWCAYKLNTDPAWAKMKVIISDATVPGEGEHKIMEFVRSQRNSPEHDPN 231
Query: 226 TQHCLCGADADLIMLGLATHEPNFTIIREE--FKPNQARPCDVCGQMGHEMKECVGLDAE 283
T+H + G DADLIMLGLATHEP+F ++RE+ F+ +AR C +CGQ GH+ + C G E
Sbjct: 232 TRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKE 291
Query: 284 PNPESVITFGSE--VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGN 341
E +E FI++ +S+LREYL EL +PNLPF + ERA+DDWVFMCFFVGN
Sbjct: 292 KAGEFDEKDKAEPLKPFIWLHVSILREYLAIELNIPNLPFRWDLERAIDDWVFMCFFVGN 351
Query: 342 DFLPHLPSLEIREGAVDRLVNLYKKTV 368
DFLPHLP+LEIRE ++ L+ ++K +
Sbjct: 352 DFLPHLPALEIRENGIETLMAIWKDNL 378
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 66/90 (73%)
Query: 398 SSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR 457
+S EE D VRLWE+G+ DRYYE KF V DIAFR V YV GL WVL YY+QGC
Sbjct: 560 TSSEEGPIDTVRLWEEGYADRYYEQKFKVDAKDIAFRHKVARAYVEGLAWVLMYYFQGCP 619
Query: 458 SWKWYFPFHYAPFASDFINIAEVDTNFETG 487
SW+W++P+HYAPFA+DF+++ ++ +FE G
Sbjct: 620 SWEWFYPYHYAPFAADFVDLGKMKISFEKG 649
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 41/53 (77%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPI+DFYPEDF+IDLNGKK +WQG+ALLPF++ RL A+ LS E+
Sbjct: 681 EDSPILDFYPEDFEIDLNGKKMSWQGIALLPFIEMPRLLDAMKTKSHLLSAED 733
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQST 650
G++T G V L+R Q I+ L ED IF++R++TE + K +K +Q +
Sbjct: 383 GYVTKDGHVDLDRAQYILSGLAKQEDSIFRRRKETEDRREAGFKRRKLNNQQGNNRGGAH 442
Query: 651 KAPSFIPGGQ 660
+P GG+
Sbjct: 443 DSPLSGRGGR 452
>sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAT1 PE=3 SV=3
Length = 1233
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/379 (55%), Positives = 270/379 (71%), Gaps = 11/379 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQ-----KIPFDSSKPNPNGMEFDNLYLDM 55
MGVPA FRWLS+KYP ++ E+ P+ G +P D+S PNPNG EFD LYLDM
Sbjct: 1 MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDM 60
Query: 56 NGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQR 115
NGI+HPCTHPE KPAP+ E+EMMV +F +R+ +VRPR+LL MAIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGKPAPETEEEMMVEVFAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQQR 120
Query: 116 SRRFRASKETAEKIAEVARIREKLLADGC-ILPPEKEKGSHFDSNCITPGTPFMARLSAC 174
SRRFRA+KE EK E + A G EK+ +DSN ITPGTPFM L+A
Sbjct: 121 SRRFRAAKEAREKHEEEQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGTPFMDLLAAS 180
Query: 175 LHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGAD 234
L Y++ ++N+DPGWK I+VI+SDA+VPGEGEHKIM++IR+QR+ P+HDPNT+H + G D
Sbjct: 181 LRYWVAQKINSDPGWKDIQVIISDASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIYGLD 240
Query: 235 ADLIMLGLATHEPNFTIIREEF--KPNQARPCDVCGQMGHEMKECVGL---DAEPNPESV 289
ADLIML LATHEP F ++RE+ N+ + C++CGQ GH C G + + E
Sbjct: 241 ADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQHDEIA 300
Query: 290 ITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPS 349
T + FIF+ ++ LREYLE EL +P LPF + ERA+DDWVF+ FFVGNDFLPHLPS
Sbjct: 301 PTPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFVGNDFLPHLPS 360
Query: 350 LEIREGAVDRLVNLYKKTV 368
LEIR+GA+D L+ ++KK +
Sbjct: 361 LEIRDGAIDTLLRIWKKEL 379
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 406 DEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPF 465
D V++WE G+++RYY+ KF V D FR V Y+ GLCWVL YYYQG SW+WY+PF
Sbjct: 661 DTVKMWEPGYRERYYKEKFGVDLSDTDFRRSVVKSYIEGLCWVLAYYYQGVPSWQWYYPF 720
Query: 466 HYAPFASDFINIAEVDTNFETGT 488
H++PFA+DF ++ +D F+ G+
Sbjct: 721 HFSPFAADFEDLESLDIQFQLGS 743
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 647 AQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALA 706
++++ P+F P DS IIDFYP +F+ID+NGKK AWQGVALLPF+DE+RL AL
Sbjct: 759 SRASIPPAFHP--LMTESDSDIIDFYPSEFEIDMNGKKMAWQGVALLPFIDEKRLLDALK 816
Query: 707 PYYEKLSVEE 716
Y LS +E
Sbjct: 817 ERYPLLSEDE 826
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 543 DNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRML-TYPGFLTDSGDVKL 601
D+ LI V +L L I + T+ +++ + L G+LT+ G V+L
Sbjct: 341 DDWVFLIFFVGNDFLPHLPSLEIRDGAIDTLL------RIWKKELPAMGGYLTNHGRVEL 394
Query: 602 ERVQLIMQDLGMMEDEIFK----KRQQTETMFKMRNKMKKRRERQM 643
R QLI+ L EDEIF+ + ET K R +M++RR++++
Sbjct: 395 GRAQLILSGLASEEDEIFRRRKEDEDRRETNRKRREEMQQRRDKEL 440
>sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4
Length = 945
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 270/370 (72%), Gaps = 13/370 (3%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+FFRWLSRKYP +I +ED PQ V+G K+P D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVIEDTPQVVDGVKLPIDYSAANPNG-ELDNLYLDMNGIVH 59
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE+KPAP+ EDEM++A+FE +R+ + RPRK+L +A+DGVAPRAKMNQQRSRRFR
Sbjct: 60 PCSHPENKPAPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRSRRFR 119
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
++++ E AR+ + A G ++ + +D+N ITPGTPFM +L+A L Y+
Sbjct: 120 SARDAKLANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGTPFMDKLAAALRYWTS 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
+L DPGWK ++VI+SDA VPGEGEHKIM++IR QRA ++PNT HC+ G DADLI L
Sbjct: 180 FKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIFL 239
Query: 241 GLATHEPNFTIIREEF--KPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
GLATHEP+F I+RE+ + N+ RP H+M + + AE +++I +E F
Sbjct: 240 GLATHEPHFKILREDVFAQDNRRRP------RQHDM---MDMSAE-EKQALIEQDAEKPF 289
Query: 299 IFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVD 358
+++ +SVLREYL EL +P LPF + ERA+DDWVFMCFF GNDFLPHLPSL++RE ++D
Sbjct: 290 LWLHVSVLREYLSAELLVPRLPFHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVRENSID 349
Query: 359 RLVNLYKKTV 368
LV+++K +
Sbjct: 350 ILVDIWKAVL 359
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 403 ESNDEVRLWEDGFKDRYYESKFDVPKDDI-AFRLMVGHEYVLGLCWVLKYYYQGCRSWKW 461
+++ VRL+E G+ DRYY++KF VP I A R V YV G+ WVL YYYQGC SW W
Sbjct: 578 DTDTGVRLFEPGYHDRYYQAKFHVPTGSIDALRKKVVRSYVEGISWVLLYYYQGCPSWTW 637
Query: 462 YFPFHYAPFASDFINIAEVDTNFETG 487
Y+P+HYAPFASDF I+++ F+ G
Sbjct: 638 YYPYHYAPFASDFTGISDLSVTFDLG 663
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+S I DFYPE+F ID+NG+K AW+ + LLPF+DE RL A+ Y LS E
Sbjct: 696 ESEIYDFYPEEFPIDMNGEKMAWKALVLLPFIDETRLLAAVRQKYPLLSEAE 747
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTK 651
+LT G + L+ V+ ++ LG E +IFKK+ + E +R K + R + +K TK
Sbjct: 365 YLTCDGKLNLKGVEKVLAQLGNRESDIFKKKYEQE----LRKKEAQERRKMLKNNPNVTK 420
Query: 652 A 652
Sbjct: 421 G 421
>sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
Length = 1020
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/372 (59%), Positives = 275/372 (73%), Gaps = 8/372 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP ++ +E++P E+ G KIP D+SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+P+P +E+ +F+ IDRLF +VRPRKLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
++K+ ++ AE R+RE+ +G LPP K FDSN ITPGT FM LS L YY+H
Sbjct: 121 SAKDASDAAAEEERLREEFEREGRRLPP-KVDSQVFDSNVITPGTEFMGVLSIALQYYVH 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
RLN+D GWK IKVILSDANVPGEGEHKIM YIR QR P DPNT+HCL G DADLIML
Sbjct: 180 LRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 239
Query: 241 GLATHEPNFTIIRE-EFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
GLATHE +F+I+RE + P Q C +CGQMGH C G + ES G +F+
Sbjct: 240 GLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEK-GDGNDFV 298
Query: 300 -----FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIRE 354
F+ + VLREYLE E+ +PN PF ER +DD++F+CFFVGNDFLPH+P+LEIRE
Sbjct: 299 KKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIRE 358
Query: 355 GAVDRLVNLYKK 366
GA++ L+ +YKK
Sbjct: 359 GAINLLMAVYKK 370
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 5/103 (4%)
Query: 388 VKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDV--PKDDIAFRLMVGHEYVLGL 445
++ D + + EE D+V+L + G+++RYYE KF V P++ R V +Y GL
Sbjct: 514 IREKSDAFNSDTTEE---DKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGL 570
Query: 446 CWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGT 488
CWV+ YY +G SW+W++P+HYAPFASD ++ E+D FE GT
Sbjct: 571 CWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGT 613
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+SPIIDFYP DF++D+NGK+F+WQG+A LPF+DE RL +A++ L+ EE
Sbjct: 645 NSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEE 696
Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 588 TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAA 647
++ G+LTD L+RV+ +Q +G ED+IF+KR R K K + +M
Sbjct: 374 SFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVKRDKAGKATKRMDD 433
Query: 648 QS-TKAPSFIPGGQFA 662
++ T P +P +F+
Sbjct: 434 EAPTVQPDLVPVARFS 449
>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
Length = 1012
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 273/382 (71%), Gaps = 10/382 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQ--KIPFDSSKPNPNGMEFDNLYLDMNGI 58
MGVP+F+RWL ++YP I +E++P EVNG IP DSSKPNPNG E+DNLYLDMNGI
Sbjct: 1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60
Query: 59 IHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
IHPC HPEDKP+P E+ +F+ IDRLF +VRPRKLL+MAIDGVAPRAKMNQQR+RR
Sbjct: 61 IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120
Query: 119 FRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYY 178
FRA+K+ AE AE ++RE+ +G LPP K FDSN ITPGT FMA LS L YY
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPP-KVDSQVFDSNVITPGTEFMATLSFALRYY 179
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
IH RLN+DPGWK IKVILSDANVPGEGEHKIM YIR + P ++PNT HCL G DADLI
Sbjct: 180 IHVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLI 239
Query: 239 MLGLATHEPNFTIIRE-EFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEV- 296
ML LATHE +F+I+RE F P + C +CGQ GH +C G E + ++V
Sbjct: 240 MLSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVV 299
Query: 297 ---EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIR 353
+ FV + +LREYLE ++ +P + +R +DD++F+CFFVGNDFLPH+P+LEIR
Sbjct: 300 VKKPYEFVNIWILREYLEHDMQIPGA--KKNLDRLIDDFIFICFFVGNDFLPHMPTLEIR 357
Query: 354 EGAVDRLVNLYKKTVYKTQEQL 375
EGA++ L+++YK ++ L
Sbjct: 358 EGAIELLMSVYKNKFRSAKKYL 379
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 373 EQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVP--KDD 430
E+L EE+ + + R D S E+ D+V+L + G+++RYYE KF ++
Sbjct: 490 EELDNEEDLKFKLKKLLRDKGDGFRSGNGEQ--DKVKLNKVGWRERYYEEKFAAKSVEEM 547
Query: 431 IAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGT 488
R V +Y GLCW++ YYY G SW W++P+HYAPFASD + ++D FE G+
Sbjct: 548 EQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGS 605
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DSPI DFYP DF+ID+NGK+++WQG++ LPFV+E+RL +A A + L+ EE
Sbjct: 637 DSPIADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEE 688
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTK 651
+LTDS + L V+ ++ +GM E++IF+KR Q + R + K R++ A + +
Sbjct: 378 YLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQRQSERFRRDKARDKARDNARDNAQ 437
Query: 652 APSFIPG 658
A G
Sbjct: 438 ASRQFSG 444
>sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAT1 PE=1 SV=3
Length = 1006
Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 267/370 (72%), Gaps = 19/370 (5%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+FFRWLSRKYP +I +E++PQ V+G +P D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVH 59
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE+KP P+ EDEM++A+FE +R+ + RPRK+L MA+DGVAPRAKMNQQR+RRFR
Sbjct: 60 PCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFR 119
Query: 121 ASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHY 177
++++ E E+ R RE++ G I+ +DSN ITPGTPFM +L+A L Y
Sbjct: 120 SARDAQIENEAREEIMRQREEV---GEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRY 176
Query: 178 YIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADL 237
+ +L DPGWK ++VI+SDA VPGEGEHKIM++IR QRA P+++PNT HC+ G DADL
Sbjct: 177 WTAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADL 236
Query: 238 IMLGLATHEPNFTIIREEF--KPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSE 295
I LGLATHEP+F I+RE+ + N+ R + +K+ + + E + + SE
Sbjct: 237 IFLGLATHEPHFKILREDVFAQDNRKR---------NNLKDTINM-TEEEKQFLQKQNSE 286
Query: 296 VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
F+++ ++VLREYL EL +P LPF + ERA+DDWVFMCFF GNDFLPHLP L++RE
Sbjct: 287 QPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVREN 346
Query: 356 AVDRLVNLYK 365
++D L++++K
Sbjct: 347 SIDILLDIWK 356
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 403 ESNDEVRLWEDGFKDRYYESKFDV-PKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKW 461
++++ V+L+E G+ +RYY +KF V P+D R + Y+ G+ WVL YYYQGC SW W
Sbjct: 592 DTDEFVKLFEPGYHERYYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNW 651
Query: 462 YFPFHYAPFASDFINIAEVDTNFETGT 488
++P+HYAP A+DF + ++ FE GT
Sbjct: 652 FYPYHYAPLATDFHGFSHLEIKFEEGT 678
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPE+F ID+NGKK +WQG+ALLPF+D++RL A+ Y LS E
Sbjct: 710 DSEIIDFYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAE 761
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/375 (53%), Positives = 257/375 (68%), Gaps = 10/375 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQ-----KIPFDSSKPNPNGMEFDNLYLDM 55
MGVPA FRWLS+KYP ++ ED P+++ G + P PNPNG E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 56 NGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQR 115
NGI+HPCTHPE +PAP+ E+EMMV IF+ +R+ + RPRK+L MAIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR 120
Query: 116 SRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACL 175
SRRFRA++E A+K E + A G + E +D+N ITPGTPFM LS L
Sbjct: 121 SRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL 180
Query: 176 HYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADA 235
Y++ +L DPGWK +K+ILSD++VPGEGEHKIMD+IR+QR+ P D NT H + G DA
Sbjct: 181 KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA 240
Query: 236 DLIMLGLATHEPNFTIIREE-FKPNQARP--CDVCGQMGHEMKECVGLD--AEPNPESVI 290
DLIML LATHEP+F ++RE+ F + P C CG++GH C +PN V
Sbjct: 241 DLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFKDPNVAEVA 300
Query: 291 TFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSL 350
FIF+ ++ LREYL EL +P +PFP+ E A+DDW+FM FFVGNDFLPHLPSL
Sbjct: 301 KTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPHLPSL 360
Query: 351 EIREGAVDRLVNLYK 365
EIREGA+D L+ +++
Sbjct: 361 EIREGAIDVLLKIWR 375
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 406 DEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPF 465
D+V+LWE G+++RYYE KF V + F V Y+ GLCWVL+YYYQG +W W++P+
Sbjct: 687 DDVKLWEPGYRERYYEKKFGVKLSEREFIDKVTKSYMEGLCWVLEYYYQGVPAWDWFYPY 746
Query: 466 HYAPFASDFINIAEVDTNFET 486
HYAPFA DF ++ +D FET
Sbjct: 747 HYAPFAQDFRDVGSMDIKFET 767
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPI+DFYP DF+ID+NGKK AWQGVALLPF+D+ RL AL E LS +E
Sbjct: 800 EDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDE 852
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMK 644
G+LT+ G V L+R Q+I++ L EDEIF+KR+ E + + K+RR + K
Sbjct: 383 GYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKDDEE--RQEHSQKRRRIEEHK 434
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/375 (53%), Positives = 257/375 (68%), Gaps = 10/375 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQ-----KIPFDSSKPNPNGMEFDNLYLDM 55
MGVPA FRWLS+KYP ++ ED P+++ G + P PNPNG E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 56 NGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQR 115
NGI+HPCTHPE +PAP+ E+EMMV IF+ +R+ + RPRK+L MAIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR 120
Query: 116 SRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACL 175
SRRFRA++E A+K E + A G + E +D+N ITPGTPFM LS L
Sbjct: 121 SRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL 180
Query: 176 HYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADA 235
Y++ +L DPGWK +K+ILSD++VPGEGEHKIMD+IR+QR+ P D NT H + G DA
Sbjct: 181 KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA 240
Query: 236 DLIMLGLATHEPNFTIIREE-FKPNQARP--CDVCGQMGHEMKECVGLD--AEPNPESVI 290
DLIML LATHEP+F ++RE+ F + P C CG++GH C +PN V
Sbjct: 241 DLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFKDPNVAEVA 300
Query: 291 TFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSL 350
FIF+ ++ LREYL EL +P +PFP+ E A+DDW+FM FFVGNDFLPHLPSL
Sbjct: 301 KTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPHLPSL 360
Query: 351 EIREGAVDRLVNLYK 365
EIREGA+D L+ +++
Sbjct: 361 EIREGAIDVLLKIWR 375
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 406 DEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPF 465
D+V+LWE G+++RYYE KF V + F V Y+ GLCWVL+YYYQG +W W++P+
Sbjct: 687 DDVKLWEPGYRERYYEKKFGVKLSEREFIDKVTKSYMEGLCWVLEYYYQGVPAWDWFYPY 746
Query: 466 HYAPFASDFINIAEVDTNFET 486
HYAPFA DF ++ +D FET
Sbjct: 747 HYAPFAQDFRDVGSMDIKFET 767
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPI+DFYP DF+ID+NGKK AWQGVALLPF+D+ RL AL E LS +E
Sbjct: 800 EDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDE 852
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMK 644
G+LT+ G V L+R Q+I++ L EDEIF+KR+ E + + K+RR + K
Sbjct: 383 GYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKDDEE--RQEHSQKRRRIEEHK 434
>sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3
SV=3
Length = 1018
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/373 (52%), Positives = 267/373 (71%), Gaps = 19/373 (5%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+FFRWLSRKYP +I +E+ Q V+G +P D + PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEPQQLVDGVALPIDYAGPNPNG-ELDNLYLDMNGIVH 59
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE+KP P+ ED+M++A+FE +R+ + RPRK+L +A+DGVAPRAKMNQQRSRRFR
Sbjct: 60 PCSHPENKPPPETEDDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQQRSRRFR 119
Query: 121 ASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHY 177
++++ E E+ R +E+L G I+ + +DSN ITPGTPFM +L+ L Y
Sbjct: 120 SARDAEIENEAREEIMRQKEQL---GQIIDDSVKNKKTWDSNAITPGTPFMDKLAIALRY 176
Query: 178 YIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADL 237
+ +L DPGWK ++VI+SDA VPGEGEHKIM++IR QRA P+++PNT HC+ G DADL
Sbjct: 177 WTAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADL 236
Query: 238 IMLGLATHEPNFTIIREEF--KPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSE 295
I LGLATHEP+F I+RE+ + N+ R + +K+ + + E + + SE
Sbjct: 237 IFLGLATHEPHFKILREDVFAQDNRKR---------NNVKDTIDMTDE-EKDLIRKQDSE 286
Query: 296 VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
F+++ +SVLREYL EL P LPFP+ ERA+DDWVFMCFF GNDFLPHLP L++RE
Sbjct: 287 KPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVREN 346
Query: 356 AVDRLVNLYKKTV 368
++D L++++K +
Sbjct: 347 SIDILLDIWKSIL 359
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 403 ESNDEVRLWEDGFKDRYYESKFDVPKDDI-AFRLMVGHEYVLGLCWVLKYYYQGCRSWKW 461
++++ V+L+E G+ DRYY KF + + I A + Y+ G+ WVL YYYQGC SW W
Sbjct: 592 DTDEAVKLFEPGYHDRYYIEKFHIEPNQIPALSKHMVKCYIEGVSWVLMYYYQGCASWTW 651
Query: 462 YFPFHYAPFASDFINIAEVDTNFETG 487
Y+P+HYAP A DF++ ++D FE G
Sbjct: 652 YYPYHYAPLAEDFVDFHDLDIKFELG 677
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 661 FAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+ +DS IIDFYP +F ID+NGKK +WQG+ALLPF+DE RL A Y+ LS +E
Sbjct: 706 MSSEDSEIIDFYPTEFPIDMNGKKMSWQGIALLPFIDETRLLTATRNQYKFLSEDE 761
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 582 LFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRER 641
+ R+ TY +T G + LE V++++++LG E +IFK R E K N+ +K++++
Sbjct: 358 ILPRLKTY---MTCDGKLNLESVEMVLKELGNREGDIFKTRHIQEIRKKEANERRKQQKQ 414
Query: 642 QMKMAAQSTKAPSF 655
Q Q F
Sbjct: 415 QNVSTGQDRHPTKF 428
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/382 (51%), Positives = 265/382 (69%), Gaps = 23/382 (6%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+FFRWLSRKYP +I +E+ P +G ++P D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEYPVIEDGVQLPLDYSSANPNG-ELDNLYLDMNGIVH 59
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE+KP P+ EDEM++A+FE +R+ + RPRK+L +A+DGVAPRAKMNQQR+RRFR
Sbjct: 60 PCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRFR 119
Query: 121 ASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHY 177
++++ E +V R RE G + + +DSN ITPGTPFM +L+ L Y
Sbjct: 120 SARDAKLQNEAREQVLREREDY---GETIDENVKSKKTWDSNAITPGTPFMDKLATALRY 176
Query: 178 YIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADL 237
+ +L DPGWK +++I+SDA VPGEGEHKIM++IR QRA ++PNT HC+ G DADL
Sbjct: 177 WTSFKLATDPGWKNLQIIISDATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADL 236
Query: 238 IMLGLATHEPNFTIIREEFKPN----QARPCDVCGQMGHEMKECVGLDAEPNPESVITFG 293
I LGLATHEP+F I+RE+ N + +P D+ E ++ + D
Sbjct: 237 IFLGLATHEPHFKILREDVFANNNYKKPKPQDMINLSEEEKQQLIQQD------------ 284
Query: 294 SEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIR 353
SE F+++ +SVLREYL ELA+P+L F + FERA+DDWVFMCFF GNDFLPHLP L++R
Sbjct: 285 SEKPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLPHLPCLDVR 344
Query: 354 EGAVDRLVNLYKKTVYKTQEQL 375
E ++D LV+++K + KT+ L
Sbjct: 345 ENSIDILVDIWKTVLPKTKTYL 366
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 64/101 (63%), Gaps = 10/101 (9%)
Query: 388 VKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDI-AFRLMVGHEYVLGLC 446
VK F D DES VRL+E G+ DRYY+ KF VP DI A + V YV G+
Sbjct: 577 VKSGFIDTDES---------VRLYEPGYHDRYYQHKFHVPAKDIPALQKDVIRCYVEGIS 627
Query: 447 WVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETG 487
WVL YYYQGC SW WY+P+HYAPFA DF NI +D +F+ G
Sbjct: 628 WVLLYYYQGCASWTWYYPYHYAPFAQDFKNIKNLDIHFDLG 668
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+S IIDFYPE+F +D+NGKK AWQG+ALLPF+DE RL K + Y KLS E
Sbjct: 701 NSEIIDFYPEEFPVDMNGKKMAWQGIALLPFIDETRLLKTVREQYSKLSDSE 752
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 267/372 (71%), Gaps = 14/372 (3%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPA FR LSRK+ VI +E +++ +G +I D S PNPNG+E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC+HPED+PAP+ EDEMMVA+FE DR+ +VRPR+LL++AIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
R+S+E A K E+ E+ G + K +DSNCITPGTPFM L+ L YYI
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
++LN+DP W+ ++ ILSDA+VPGEGEHKIM++IR QR +P++DPNT H + G DADLIM
Sbjct: 181 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 240
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMK---ECVGLDAEPNPESVITFGSEV 296
LGLATHEP+F ++RE DV Q G K E +G+ + +
Sbjct: 241 LGLATHEPHFRVLRE----------DVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKK 290
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
FI++ +S+LREYLE EL +PNLPFP+ ERA+DDWVF FFVGNDFLPHLPSL+IR+GA
Sbjct: 291 PFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGA 350
Query: 357 VDRLVNLYKKTV 368
V+RL +++ ++
Sbjct: 351 VERLTEIWRASL 362
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Query: 387 GVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDV-PKDDIAFRLMVGHEYVLGL 445
G KR D S+EE E+ D VRL+E G+++RYYE KF + P + R V H YV GL
Sbjct: 566 GQKRKAPD---STEENENTDTVRLYEPGYRERYYEQKFHISPDEPEKIREAVKH-YVHGL 621
Query: 446 CWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFE 485
CWVL YYYQGC SW WY+P+HYAPFA+DF ++A +D FE
Sbjct: 622 CWVLLYYYQGCPSWTWYYPYHYAPFAADFKDLASIDVKFE 661
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
++S IIDFYPE+F IDLNGKKF WQGVALLPF+DE RL A++ Y +L+ EES+
Sbjct: 695 ENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESK 749
Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQS 649
G+LT G V L R ++I+ +G ED+IFK+ +Q E + ++R++R+ ++S
Sbjct: 367 GYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQED--RRNENYRRRQQRESNQESES 423
>sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1
PE=3 SV=4
Length = 1003
Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 258/377 (68%), Gaps = 21/377 (5%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDK-PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPA FRWLSRKYP +I VED QE+ + S PNPNG E DNLYLDMNGI+
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEDDVTQEIGAAQF----SDPNPNG-ELDNLYLDMNGIV 55
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC+HPE K P+ EDEM + +F+ DR+ + RPRK+L +A+DGVAPRAKMNQQRSRRF
Sbjct: 56 HPCSHPEHKLPPETEDEMFLDVFKYTDRVLLMARPRKVLMIAVDGVAPRAKMNQQRSRRF 115
Query: 120 RASKETAEKIAEVAR-IREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYY 178
R++++ E R IRE+ I K K S +DSN ITPGTPFM L+ L Y+
Sbjct: 116 RSAQDAKIAHEEKERQIRERESRGESIDDAIKGKKS-WDSNAITPGTPFMDSLAQALRYW 174
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
+ +L DPGW ++VI+SDA VPGEGEHK+M +IR QR+ P++DPNT+HC+ G DADLI
Sbjct: 175 VAYKLATDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLI 234
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQ--MGHEMKECVGLDAEPNPESVITFGSEV 296
LGLATHEP+F ++RE+ NQ+R + Q M + K+ + P
Sbjct: 235 FLGLATHEPHFRVLREDVFANQSRQMRISDQLSMTQDQKDSIAEQDAKKP---------- 284
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
F+++ ++VLREYLE EL P+L FP+ ERA+DDWVFMCFFVGNDFLPHLPSL++R+
Sbjct: 285 -FLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRDNG 343
Query: 357 VDRLVNLYKKTVYKTQE 373
+D LVN +K+ + K ++
Sbjct: 344 IDILVNCWKRMLPKLRD 360
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 389 KRSFDDVD-ESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDD--IAFRLMVGHEYVLGL 445
KR D V+ E + +E+ D VR+WE G++ RYY+SKF V ++ R + Y+ G+
Sbjct: 519 KRPIDQVEAELPKPDENGDSVRMWEPGYRQRYYQSKFGVVSEEEINKIRRDMVRCYLEGI 578
Query: 446 CWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEV 480
WVL YYYQGC SW+WY+P+HYAPFA+DF+NI ++
Sbjct: 579 SWVLLYYYQGCPSWQWYYPYHYAPFAADFVNINDI 613
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 42/53 (79%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
S I+DFYPE+F+ID+NGKK +WQG+ALLPF+DE RL +AL Y L+ +E E
Sbjct: 658 SEILDFYPEEFQIDMNGKKMSWQGIALLPFIDENRLLEALEKRYHLLTDDERE 710
Score = 39.7 bits (91), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTK 651
++T G++ LE V+ ++ L EDEIF+KR + E K R + KRR K+A + K
Sbjct: 361 YITCDGNLNLESVEKLLSSLSYKEDEIFRKRHEGE---KRREENDKRR----KLAQEEEK 413
Query: 652 APSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVAL 692
A Q+ PQ S D P D+N + G A+
Sbjct: 414 ALK----NQYIPQVSKGSDKAP--LTADINMPLLSTSGDAV 448
>sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAT1 PE=3 SV=3
Length = 968
Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/369 (51%), Positives = 258/369 (69%), Gaps = 17/369 (4%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPA FRWLSRKYP +I VE++ E+ G K PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKY----ENPNPNG-EIDNLYLDMNGIVH 55
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE K P+ EDEM + IF+ DR+ + RPRK+L +A+DGVAPRAKMNQQR+RRFR
Sbjct: 56 PCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFR 115
Query: 121 ASKETAEKIAEVA-RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
A+K+ K ++ ++E+ L G I+ + +DSN ITPGTPFM RL+ L Y++
Sbjct: 116 AAKDAELKAKQLEIEVQERELR-GEIINDAIKGKKQWDSNAITPGTPFMDRLAEALRYWV 174
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
+L++DPGW ++VI+SDA VPGEGEHK+M +IR QR+ P +DPNT+HC+ G DADLI
Sbjct: 175 AYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIF 234
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
LGLATHEP+F ++RE+ +Q + + Q+ DA N ++V + F+
Sbjct: 235 LGLATHEPHFRVLREDVFASQDKKFTIKDQIA---------DANSNGDTVAK-EDKKPFL 284
Query: 300 FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR 359
++ ++VLREYL+ EL P + FP+ ERA+DDWVF+CFF GNDFLPHLPSL++R+ +D
Sbjct: 285 WLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRDNGIDT 344
Query: 360 LVNLYKKTV 368
LV +K+++
Sbjct: 345 LVQCWKRSL 353
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 400 EEEESNDEVRLWEDGFKDRYYESKFDVPKDD---IAFRLMVGHEYVLGLCWVLKYYYQGC 456
+++ +D+++LWE G+ RYYE+KF D+ R +V H YV G+ WV YYYQGC
Sbjct: 531 DKQTQSDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRH-YVEGIAWVALYYYQGC 589
Query: 457 RSWKWYFPFHYAPFASDFINIAEV 480
SW WYFP+HYAPFA+DF N+ E+
Sbjct: 590 PSWNWYFPYHYAPFAADFTNLEEL 613
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPE+F+ID+NGKK +WQG+ LLPF+DE+RL A+ YE L+ +E
Sbjct: 656 DSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDE 707
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKK---RRERQMKMAAQ 648
++T G + L+ V+++M +L E EIFK + E + NK +K +ER +K
Sbjct: 359 YVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREENNKRRKLAQEQERALKRVYS 418
Query: 649 S 649
S
Sbjct: 419 S 419
>sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAT1 PE=3 SV=3
Length = 1010
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/387 (48%), Positives = 251/387 (64%), Gaps = 54/387 (13%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDSSKPNPNGMEFDNLYLDMNGII 59
MGVP +R LS+K P ++ +ED+ V+G++IP D S PNPNG E DNLYLDMNGI+
Sbjct: 1 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIPGSDYSAPNPNG-ELDNLYLDMNGIV 59
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPCTHPE + AP EDEM++A+F+ +R+ + RPRK+L MAIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEGEEAPPSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQRARRF 119
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKG------------------SHFDSNCI 161
R++K+ A I + + +L A L EKG +DSN I
Sbjct: 120 RSAKDAA--IEAESTLESELKAKTIELQSSGEKGKSLETILDEFKQGLVNKPGKWDSNAI 177
Query: 162 TPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPD 221
TPGTPFM +L+A L Y++ +LN +PGW+ +KV++SDA VPGEGEHKIM++IR QR P
Sbjct: 178 TPGTPFMEKLAAALRYWVGYKLNTEPGWRDLKVVISDATVPGEGEHKIMEFIRSQRGDPT 237
Query: 222 HDPNTQHCLCGADADLIMLGLATHEPNFTIIREE-FKPNQARPCDVCGQMGHEMKECVGL 280
++ NT HC+ G DADLI LGLATHEP F ++RE+ F+ N+ GH+ K
Sbjct: 238 YNANTSHCIYGLDADLIFLGLATHEPKFKLLREDVFRQNKT--------AGHQKK----- 284
Query: 281 DAEPNPESVITFGSEVEFIFVRLSVLREYLEKEL--AMPNLPFPYSFERALDDWVFMCFF 338
FI++ + +LREYL ++L P P+ ERA+DDWVF+CFF
Sbjct: 285 ----------------PFIWLNIDILREYLREDLRFTHPQTKIPFDLERAIDDWVFLCFF 328
Query: 339 VGNDFLPHLPSLEIREGAVDRLVNLYK 365
VGNDFLPHLP+ ++R+G+++ LVN +K
Sbjct: 329 VGNDFLPHLPACDVRDGSINVLVNQWK 355
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 406 DEVRLWEDGFKDRYYESKFDVPKDDI-AFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFP 464
D V+ + G+ +RYY +KF +D++ R V EY+ G+CWVL YYY GC+SW W++P
Sbjct: 539 DHVQFHKSGYTERYYMNKFHAKEDEVDNLRRQVAEEYMKGVCWVLMYYYHGCQSWSWFYP 598
Query: 465 FHYAPFASDFINIAEVDTNF 484
+HYAP A DF I+ + F
Sbjct: 599 YHYAPLAGDFDQISNMKVEF 618
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 661 FAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
+ ++SPIID+YPE+F++DLNGKK W+ V LLPF++ + L + + Y +L+ EE +
Sbjct: 650 MSEENSPIIDYYPENFQLDLNGKKQEWKAVVLLPFINADHLLEHVQAKYTELTPEEKD 707
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/372 (46%), Positives = 227/372 (61%), Gaps = 59/372 (15%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MG+P FFRW+S +YP Q + +IP EFDNLYLDMNGI+H
Sbjct: 1 MGIPKFFRWMSERYPLC--------SQLIENDRIP-----------EFDNLYLDMNGILH 41
Query: 61 PCTHPEDKPA--PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
CTH D + P E+EM +AIF I+ LF ++P+KLLYMA+DG APRAKMNQQRSRR
Sbjct: 42 NCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRR 101
Query: 119 FRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYY 178
FR +K+ A AR++ + +G P E+ FDSNCITPGT FM R+S L+Y+
Sbjct: 102 FRTAKD-----AHDARLKAE--RNGEDFPEEQ-----FDSNCITPGTTFMERVSRQLYYF 149
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
IH ++ ND W+ I+VI S + PGEGEHKIM+YIR Q+AQP ++PNT+HCL G DADLI
Sbjct: 150 IHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLI 209
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
MLGL +H+P+F ++REE A + ++ H+ +F
Sbjct: 210 MLGLLSHDPHFCLLREEVTFGPASR-NRSKELAHQ-----------------------KF 245
Query: 299 IFVRLSVLREYLEKEL--AMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
+ LS+LREYLE E F Y E+ LDD++ + FFVGNDFLPHLP L I EGA
Sbjct: 246 YLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEGA 305
Query: 357 VDRLVNLYKKTV 368
+ + ++YKK +
Sbjct: 306 LALMFSIYKKVM 317
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 401 EEESNDEVRLWED--GFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRS 458
EE++ E + +D +KD YY SK D + YV GL WVL YYY+GC+S
Sbjct: 480 EEQALKEKNVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQWVLFYYYRGCQS 539
Query: 459 WKWYFPFHYAPFASDFINIAEVDTNFETGT 488
W WY+ +H+AP SD + +V +F+ GT
Sbjct: 540 WGWYYNYHFAPKISDVLKGLDVKIDFKMGT 569
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+SPIIDFYPE+F +D NGK +W+ V ++PF+DE RL ALA + L+ EE
Sbjct: 601 ESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEE 652
>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1
Length = 1706
Score = 312 bits (800), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/368 (44%), Positives = 222/368 (60%), Gaps = 58/368 (15%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + +E +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKE---HQIP-----------EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYY 178
FR++KE +KI +K + G LP E + FDSNCITPGT FMARL L Y+
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+HCL G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
MLGL +HE +F+++REE + + VC PE E F
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVCA-----------------PE-------ETTF 246
Query: 299 IFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
+ LS++REY++ E ++ + F Y ER +DDW+ M F VGNDF+PHLP L I A
Sbjct: 247 HLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDA 306
Query: 357 VDRLVNLY 364
+ L Y
Sbjct: 307 LPLLYGTY 314
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 369 YKTQEQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGF---KDRYYESKF- 424
YK +++L+ +EN K + + E+ ++ L+E F K YY +K
Sbjct: 384 YKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMG 443
Query: 425 -DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTN 483
DV DD F YV + W+L YYY G +SW WY+P+HYAPF SD NI+ + +
Sbjct: 444 VDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIH 501
Query: 484 FETG 487
FE G
Sbjct: 502 FELG 505
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEE 589
>sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1
Length = 1719
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/368 (44%), Positives = 221/368 (60%), Gaps = 58/368 (15%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + +E +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKE---HQIP-----------EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYY 178
FR++KE +KI +K + G LP E + FDSNCITPGT FMARL L Y+
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+HCL G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
MLGL +HE +F+++REE + + VC PE E F
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVCA-----------------PE-------ETTF 246
Query: 299 IFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
+ LS++REY++ E + + F Y E+ +DDW+ M F VGNDF+PHLP L I A
Sbjct: 247 HLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHDA 306
Query: 357 VDRLVNLY 364
+ L Y
Sbjct: 307 LPLLYGTY 314
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 385 GRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLG 444
G GV + DE+ +++ E R +K YY +K V F YV
Sbjct: 407 GEGVASRDNFEDETEDDDLFETEFR----QYKRTYYMTKMGVDVVSDEFLANQAACYVQA 462
Query: 445 LCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETG 487
+ W+L YYY G +SW WY+P+HYAPF SD +I+ + +FE G
Sbjct: 463 IQWILHYYYHGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELG 505
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEE 589
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 296 bits (757), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 224/376 (59%), Gaps = 61/376 (16%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MG+P FFR++S ++P ++ Q + G +IP EFDNLYLDMN I+H
Sbjct: 1 MGIPKFFRYISERWPMIL--------QLIEGTQIP-----------EFDNLYLDMNSILH 41
Query: 61 PCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
CTH D K E+E+ I ID LF+ ++P+K+ YMAIDGVAPRAKMNQQR+RR
Sbjct: 42 NCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARR 101
Query: 119 FRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYY 178
FR + + + + +K + +G +P KG FDSN ITPGT FMA+L+ L Y+
Sbjct: 102 FRTAMDAEKAL-------KKAIENGDEIP----KGEPFDSNSITPGTEFMAKLTKNLQYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
IHD+++ND W+ +++I S VPGEGEHKIM++IR ++Q D + NT+HC+ G DADLI
Sbjct: 151 IHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
MLGL+TH P+F ++REE G+ E K F
Sbjct: 211 MLGLSTHGPHFALLREEV---------TFGRRNSEKKSL----------------EHQNF 245
Query: 299 IFVRLSVLREYLE---KELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
+ LS+LREY+E KE+A + F Y+FER LDD++ + F +GNDFLP+LP L + +G
Sbjct: 246 YLLHLSLLREYMELEFKEIA-DEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKG 304
Query: 356 AVDRLVNLYKKTVYKT 371
A L+ +K+ + T
Sbjct: 305 AFPVLLQTFKEALLHT 320
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 400 EEEESNDEVRLWEDGF---KDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGC 456
++EE E ++ + F K YY K D + +YV GL WVL YYY+GC
Sbjct: 493 DKEELETEKTIYNERFERWKHEYYHDKLKFTTDSEEKVRDLAKDYVEGLQWVLYYYYRGC 552
Query: 457 RSWKWYFPFHYAPFASDFINIAEVDTNFE 485
SW WY+P HYAP SD + D F+
Sbjct: 553 PSWSWYYPHHYAPRISDLAKGLDQDIEFD 581
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 642 QMKMAAQSTKAPSFIPGGQFAP----QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVD 697
Q MA ++ + IP F P + SPI DFYP + ++D NGK W+ V L+ FVD
Sbjct: 590 QQLMAVLPERSKNLIPPA-FRPLMYDEQSPIHDFYPAEVQLDKNGKTADWEAVVLISFVD 648
Query: 698 EERLHKALAPYYEKLSVEE 716
E+RL +A+ PY KLS EE
Sbjct: 649 EKRLIEAMQPYLRKLSPEE 667
>sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6
GN=IIV6-012L PE=3 SV=1
Length = 624
Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 138/549 (25%), Positives = 224/549 (40%), Gaps = 167/549 (30%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MG+ FF+WL + S + C++ + N Q I D L +DMNGIIH
Sbjct: 1 MGIKYFFKWLKTNH-SESIKCID---RHDNSQCI--------------DVLLIDMNGIIH 42
Query: 61 PCTH----------PEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAK 110
P++ K ++ + IDR+ +P++L+ + IDGVAPR+K
Sbjct: 43 NSAQEVYGYGSFSFPKENACDK---KVYSLVCRQIDRMVIQFKPKELI-LCIDGVAPRSK 98
Query: 111 MNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMAR 170
QQR RRF A+ + + E K S FDSN I+PGT FM
Sbjct: 99 QIQQRQRRFLAAHDRKKPGTEFN------------FDCNKGNTSKFDSNSISPGTEFMHN 146
Query: 171 LSACLHYYI----------------------------HDRLNNDPGWKGIKVILSDANVP 202
L + +I ++++ W + V+ ++ V
Sbjct: 147 LGRYIDIHIKKKQKPAFTGRETTDAPQNNWRNKDQSWRQKVDDTAEWSNLTVVFANDKVS 206
Query: 203 GEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLA----THEPNFTIIREEFKP 258
GEGEHK++DYIRK + +C+ G+DADLIML ++ T N ++R+E+K
Sbjct: 207 GEGEHKLLDYIRKY-----GNSYYTYCIYGSDADLIMLSMSALTTTAIKNIYVLRDEYK- 260
Query: 259 NQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPN 318
PN ++ + + + L K++ N
Sbjct: 261 ------------------------SPN------------YLLINIPNFVKNLIKDVK-SN 283
Query: 319 LPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQE 378
+R ++D++FMCF VGNDFLPH+PS+EI ++ ++ Y K + +
Sbjct: 284 WTDKLDEKRFINDFIFMCFMVGNDFLPHIPSIEIMTNGIESMLAFYTKN-----KNYITD 338
Query: 379 ENGGG-------------GGRGVKRSF------------DDVDESSEEEESND------- 406
NG G G+++S DD+ ESS +N+
Sbjct: 339 NNGLGEIFNYESLLPILKDLEGLEQSLCNEKVNNSEYFRDDLLESSSFLVTNEFGQQKCV 398
Query: 407 EVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFH 466
+ + + + +++ES + LM Y+ G+ WVL YY W+W + +
Sbjct: 399 NINEYREKYMKKHFESSSEAS-------LM----YLEGMQWVLSYYTLKVPDWEWSYKYD 447
Query: 467 YAPFASDFI 475
YAP + I
Sbjct: 448 YAPNLTSII 456
>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
GN=IIV3-059L PE=3 SV=1
Length = 560
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 141/526 (26%), Positives = 211/526 (40%), Gaps = 135/526 (25%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MG+ FFRW +P+ + ++ PF L LD+NGIIH
Sbjct: 1 MGIKYFFRWYKDSFPNTVTKYSTKNHKKSQDTDEPF-------------LLLLDLNGIIH 47
Query: 61 PCTHP--------------EDKPAPKDEDEMMVA--IFECIDRLFRIVRPRKLLYMAIDG 104
+ P K E +++V + ID L +V PR+L+ + IDG
Sbjct: 48 TSCQKIYKYGSFEPKNLLKKSPPVYKGEKDVLVYEDVLASIDSLVALVEPRELV-LCIDG 106
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAP +K QQR RRF K DG FDSNCI+PG
Sbjct: 107 VAPVSKQIQQRQRRFITHK-----------------TDGG-----------FDSNCISPG 138
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVI-LSDANVPGEGEHKIMDYIRKQRAQPDHD 223
T F+ +L L ++ +L + W + I D+ VPGEGEHK+ D++R + + D
Sbjct: 139 TEFLFQLGLYLKTHLESKLEKE--WLNVSTIYFMDSLVPGEGEHKLFDFLRTHQTRIV-D 195
Query: 224 PNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAE 283
+ G DADLIML L + I+E
Sbjct: 196 TKFNIVVVGNDADLIMLSLLV---SVLFIKE----------------------------- 223
Query: 284 PNPESVI---TFGSEVEFIFVRLSVLREYLEKELAMPNLPF-PYSFERALDDWVFMCFFV 339
NP S++ +++++ V +++L++ + + + F PY FE + D+V MCF +
Sbjct: 224 -NPLSILREDLTSKKLDYLLVDINLLKDTIYQNASRDKPRFTPYDFEFVICDFVVMCFMI 282
Query: 340 GNDFLPHLPSLEIREGAVDRLVNLYKKTV-YKTQEQLRQ--EENGGGGGRGVKRSFDD-- 394
GNDFLP +P I +G +D L+ Y T Y T + + N G +K +F
Sbjct: 283 GNDFLPSVPLFNIYDGGLDMLLKYYFTTAGYITCRSVSKFYGRNKGKKMEKIKINFKHLQ 342
Query: 395 ---------VDESSEEEESN---------------DEVRLWEDGFKDRYYESKFDVPKDD 430
V+ + E N E L ED +Y + P
Sbjct: 343 PYLHYIATAVNPQAIEHYRNRNYGYPNVLLDVVLKKEAMLTEDV--TTHYLKAYS-PHHK 399
Query: 431 IAFRLMVGHEYVLGLCWVLKYYYQG--CRSWKWYFPFHYAPFASDF 474
I L+ H Y+ + W+ YY G C W Y+P +AP A D
Sbjct: 400 ITKSLV--HSYLEEIKWIFNYYAYGAVCIDWNMYYPSQFAPTALDL 443
>sp|Q5UQ94|YR528_MIMIV Putative 5'-3' exonuclease R528 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R528 PE=1 SV=1
Length = 621
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 159 NCITPGTPFMARLSACLHYYIHDRLNN--DPGWKGIKVILSDANVPGEGEHKIMDYIRKQ 216
N ITPGT FM +L ++Y D++ + + + + +I++D GEGE KI++Y+ K
Sbjct: 37 NKITPGTAFMNKL---VNYLKSDQIQSLLNTNRQDMNIIITDMYEVGEGEKKIVNYVHKY 93
Query: 217 RAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEM-K 275
H+ + + DAD+I+L + N ++R + ++ ++ + +M K
Sbjct: 94 L----HNTSDTVMVYSPDADVILLCMLMPVSNLYMLRHNQETSKKFKRNIYDLINIKMLK 149
Query: 276 ECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFM 335
+ NP+ F E + N+ + D V +
Sbjct: 150 NNISYYINNNPD----FSRE-----------------NFIVDNINY---------DLVCI 179
Query: 336 CFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQ 374
GNDF+P + ++ +++G +++ Y KT+ + +E+
Sbjct: 180 STLFGNDFVPKIETINVKKG-FQNIMDAYLKTLIELKER 217
>sp|Q5UQL9|YR423_MIMIV Uncharacterized protein R423 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R423 PE=4 SV=1
Length = 530
Score = 33.1 bits (74), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
Query: 249 FTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLRE 308
F + +EFK Q +PC +CG+ ++ K G+D N E I
Sbjct: 386 FQLSNKEFKELQQKPCYLCGRKSND-KHTNGVDRVCNEEGYIPTNCRS------CCGDCN 438
Query: 309 YLEKELAMPNLPFPYSF---------ERALDDWVFMCFFVGNDFLPHLP-----SLEIRE 354
YL+K+ + N+ F +F ++ DDW F ND L IRE
Sbjct: 439 YLKKDYKLDNVVFRCAFIALMHKNNAKKLQDDWKPSRFHESNDKKLSKEENREIKLSIRE 498
Query: 355 GAVDRLVNLYKKTVYKTQEQL 375
+ +K+V K Q QL
Sbjct: 499 NKEKQRKKSVEKSVSKLQNQL 519
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,182,010
Number of Sequences: 539616
Number of extensions: 13227855
Number of successful extensions: 34737
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 34449
Number of HSP's gapped (non-prelim): 176
length of query: 718
length of database: 191,569,459
effective HSP length: 125
effective length of query: 593
effective length of database: 124,117,459
effective search space: 73601653187
effective search space used: 73601653187
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)