Query psy1016
Match_columns 718
No_of_seqs 200 out of 511
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqd_A Protein DHP1, 5'-3' exo 100.0 2E-194 5E-199 1663.1 49.6 566 1-718 4-752 (899)
2 3pie_A 5'->3' exoribonuclease 100.0 2E-173 6E-178 1524.0 44.6 518 1-718 1-649 (1155)
3 2y35_A LD22664P; hydrolase-DNA 100.0 3E-162 1E-166 1442.6 42.7 515 1-718 1-571 (1140)
4 1b43_A Protein (FEN-1); nuclea 98.5 1.4E-07 5E-12 100.6 7.2 151 50-241 23-180 (340)
5 1rxw_A Flap structure-specific 98.3 7.5E-06 2.5E-10 87.2 15.3 33 330-364 223-255 (336)
6 1a76_A Flap endonuclease-1 pro 98.3 2E-06 6.9E-11 91.3 10.0 92 191-352 143-235 (326)
7 3qe9_Y Exonuclease 1; exonucle 98.1 1.3E-05 4.5E-10 86.3 11.8 170 1-241 1-178 (352)
8 3ory_A Flap endonuclease 1; hy 97.9 8.7E-05 3E-09 80.3 13.1 34 330-365 238-272 (363)
9 1ul1_X Flap endonuclease-1; pr 97.7 0.00017 5.7E-09 78.3 12.2 230 2-350 1-240 (379)
10 3q8k_A Flap endonuclease 1; he 97.7 0.00029 9.8E-09 75.6 13.2 245 2-365 1-253 (341)
11 2izo_A FEN1, flap structure-sp 97.5 0.00044 1.5E-08 74.0 12.2 148 50-241 20-177 (346)
12 1exn_A 5'-exonuclease, 5'-nucl 96.4 0.067 2.3E-06 56.2 15.7 145 50-252 21-166 (290)
13 3fqd_A Protein DHP1, 5'-3' exo 52.5 3.7 0.00013 49.0 0.8 37 591-627 370-406 (899)
14 3pie_A 5'->3' exoribonuclease 50.5 9.2 0.00032 47.0 3.8 42 591-632 322-363 (1155)
15 1dsq_A Nucleic acid binding pr 46.7 9.4 0.00032 25.7 1.8 19 261-279 2-20 (26)
16 1nc8_A Nucleocapsid protein; H 45.8 13 0.00043 25.7 2.4 20 260-279 5-24 (29)
17 2kfe_A Meucin-24; alpha-helix, 36.2 30 0.001 23.9 2.9 21 164-185 3-23 (26)
18 1a6b_B Momulv, zinc finger pro 26.9 31 0.0011 25.9 2.0 22 260-281 9-30 (40)
19 4id3_A DNA repair protein REV1 23.5 1.1E+02 0.0038 25.0 5.1 63 187-255 6-72 (92)
20 2ysa_A Retinoblastoma-binding 22.8 30 0.001 27.7 1.3 18 261-278 7-24 (55)
21 1u6p_A GAG polyprotein; MLV, A 20.5 36 0.0012 27.3 1.4 21 261-281 23-43 (56)
22 3l3e_A DNA topoisomerase 2-bin 20.1 84 0.0029 27.1 3.8 64 187-255 14-83 (107)
No 1
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-194 Score=1663.09 Aligned_cols=566 Identities=53% Similarity=0.943 Sum_probs=497.5
Q ss_pred CcchhHHHHHHHhCCCceecccccCCccc-CCccccCCCCCCCCCCcccceEEEecccccccccCCCCCCCCCCHHHHHH
Q psy1016 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMV 79 (718)
Q Consensus 1 MGVP~FfrWL~~rYP~iv~~~~e~~~~~~-~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~~~~~~teee~f~ 79 (718)
||||+|||||++|||+|+++|+|+.++.+ +|.++|+|.+.|||||.+|||||||||||||+|+|+++.+.+.||++||.
T Consensus 4 MGVP~ffRWLs~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~~~~te~e~~~ 83 (899)
T 3fqd_A 4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMV 83 (899)
T ss_dssp CCHHHHHHHHHHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSCCCCSHHHHHH
T ss_pred cchHHHHHHHHHHCCccchhhcccccccccCCccccccccCCCCCCcccceEEEecchhhhhhcCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999998887 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCccc
Q psy1016 80 AIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSN 159 (718)
Q Consensus 80 ~If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~fDSN 159 (718)
+||+|||+||++|||||+||||||||||||||||||+||||+|++++++.+..+++++++.++|...+.+...+..||||
T Consensus 84 ~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN 163 (899)
T 3fqd_A 84 AVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSN 163 (899)
T ss_dssp HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHSCCCCCGG
T ss_pred HHHHHHHHHHHHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCccccccccCCCcC
Confidence 99999999999999999999999999999999999999999999998877777778888888884333333356799999
Q ss_pred cccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHHH
Q psy1016 160 CITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239 (718)
Q Consensus 160 ~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLIm 239 (718)
||||||+||.+|+.+|++||++||++||.|++++||||||+||||||||||+|||++|++|+||||++|||||+||||||
T Consensus 164 ~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLIm 243 (899)
T 3fqd_A 164 CITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 243 (899)
T ss_dssp GSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHHHHhCCCCC
Q psy1016 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNL 319 (718)
Q Consensus 240 L~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~~E~~~~~l 319 (718)
|||+||||||+||||++.++. +|.||...+|.+..+.............++|+||||++|||||..||..+++
T Consensus 244 L~LatHep~f~ILRE~v~~~~-------~q~~~~~~~~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~ 316 (899)
T 3fqd_A 244 LGLATHEPHFRVLREDVFFQQ-------GSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNL 316 (899)
T ss_dssp HHHHTTCSSEEEEEECCC----------------CTTTTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTC
T ss_pred HhhhccCCceEEEeeecccCc-------CccccchhhhccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCC
Confidence 999999999999999987654 5678888899886543111111122346789999999999999999999999
Q ss_pred CCCCCccchhhHHhhhhcccccccCCCCCCccccchhHHHHHHHHHHHhhhcCCcccccccC------------------
Q psy1016 320 PFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENG------------------ 381 (718)
Q Consensus 320 ~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Yk~~l~~~~gYLt~~ek~------------------ 381 (718)
+|+||+||+||||||||||||||||||||+|+|++|||+.|+++||+++++++||||+.++.
T Consensus 317 ~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I~egaid~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~L~~~E~~ 396 (899)
T 3fqd_A 317 PFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDD 396 (899)
T ss_dssp SSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCGGGTHHHHHHHHHHHHHHHHSSCSEETTEECHHHHHHHHHHHHTTHHH
T ss_pred CCCchhhhhhhhhhhhhHhhCcccCCCCCccCcCCChHHHHHHHHHHHHHHcCCeeecCCEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999854220
Q ss_pred --------------CCCC-------C-C------------------------------CC----C---------------
Q psy1016 382 --------------GGGG-------R-G------------------------------VK----R--------------- 390 (718)
Q Consensus 382 --------------g~~~-------~-~------------------------------~k----r--------------- 390 (718)
+.+. + . .+ +
T Consensus 397 iF~~r~~~e~~~~~~~krr~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (899)
T 3fqd_A 397 IFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLS 476 (899)
T ss_dssp HHHHHHHHHTTTC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccccccccccCcccccccccc
Confidence 0000 0 0 00 0
Q ss_pred --------------------------C---------CCC-----------------C--CC---C---------------
Q psy1016 391 --------------------------S---------FDD-----------------V--DE---S--------------- 398 (718)
Q Consensus 391 --------------------------~---------~~~-----------------~--~~---~--------------- 398 (718)
. ... . ++ .
T Consensus 477 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~n~~~a~~lk~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 556 (899)
T 3fqd_A 477 EKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTP 556 (899)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccchhhhhhhhhhcchhhhhhhhhhhhhhcccchhHHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence 0 000 0 00 0
Q ss_pred ---------------------CccccchhhhhhhhhhhHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhHHHhhhhcCCCC
Q psy1016 399 ---------------------SEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR 457 (718)
Q Consensus 399 ---------------------~~~~~~~d~v~l~e~~~k~rYY~~Kf~~~~~d~e~~~~i~~~YleGL~WVL~YYy~Gcp 457 (718)
.++.+..|.+++|+++||+|||++|||++.++.+++++||++|||||||||+|||+|||
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l~e~g~K~rYY~~KF~~~~~d~e~~~~v~~~YvEGL~WVL~YYYqGc~ 636 (899)
T 3fqd_A 557 VVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCP 636 (899)
T ss_dssp ----------------------------CCSCTTSTTHHHHHHHHTSCCCTTCTHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred chhhhhccccccccccccccccccccchhhhhhcccchHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 00011335688999999999999999999888899999999999999999999999999
Q ss_pred CcccccCCCCCcchhhhhhhccccccccCCCCCCCcHHHHHhhhhcccccchhcccccccccccccccccCCccccccch
Q psy1016 458 SWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRIL 537 (718)
Q Consensus 458 SW~WyYPYHYAPfaSDl~~i~~~~i~Fe~g~kPf~PfeQLl~Il~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (718)
||+||||||||||||||+++.+++++|++|. ||+|||||
T Consensus 637 SW~WyYPYHYAPfaSD~~~~~~~~i~Fe~G~-PF~PfEQL---------------------------------------- 675 (899)
T 3fqd_A 637 SWTWYYPYHYAPFAADFKDLASIDVKFELNQ-PFKPYEQL---------------------------------------- 675 (899)
T ss_dssp CSSCCCCCSSCCCGGGCCSCTTCCCCCCCCC-CCCHHHHH----------------------------------------
T ss_pred CCcccCcccccchHHHHhhcccCceecCCCC-CCChHHHH----------------------------------------
Confidence 9999999999999999999999999999996 99999999
Q ss_pred hhhhcchhHHHHHHHHHhhhhccceeeeeeeeeceeeecccccccccccccCCCCcCCccchhHHHHHHHHhhcccchHH
Q psy1016 538 KFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDE 617 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~vlp~~s~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 617 (718)
|||||++|+++ ||
T Consensus 676 -----------------------------------MaVLPaaS~~~---------LP----------------------- 688 (899)
T 3fqd_A 676 -----------------------------------LGVLPAASKNN---------LP----------------------- 688 (899)
T ss_dssp -----------------------------------HHHCCGGGGGG---------SC-----------------------
T ss_pred -----------------------------------HhhcCHhhhCc---------cc-----------------------
Confidence 99999999999 99
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCCCCCccccCCCCccccCCCCcccceeEEeccCCC
Q psy1016 618 IFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVD 697 (718)
Q Consensus 618 ~~~~~~~~~~~~~~~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spi~dfyP~~f~~D~ngk~~~w~~v~llPfid 697 (718)
++| |+|| ++|+|||+||||++|+|||||||++|||||||||||
T Consensus 689 --------~~y---~~LM--------------------------tdp~SpIiDFYP~dFeiDmNGKk~~WqgVvlLPFID 731 (899)
T 3fqd_A 689 --------EKL---QTLM--------------------------TDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFID 731 (899)
T ss_dssp --------HHH---HHHH--------------------------HCTTCTTGGGCCSCCCEECSSSSCTTSSEECCCCCC
T ss_pred --------HHH---HHHh--------------------------cCCCCcchhhCcccccccCCCCccccceEEecCccC
Confidence 999 9999 999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCChhhhC
Q psy1016 698 EERLHKALAPYYEKLSVEESE 718 (718)
Q Consensus 698 ~~~l~~~~~~~~~~l~~~e~~ 718 (718)
|+|||+||+++++.||+||++
T Consensus 732 E~RLL~A~~~~~~~LT~eEk~ 752 (899)
T 3fqd_A 732 ENRLLNAVSKIYPQLTEEESK 752 (899)
T ss_dssp HHHHHHHHHTTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhccCCHHHHH
Confidence 999999999999999999973
No 2
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=100.00 E-value=1.8e-173 Score=1523.97 Aligned_cols=518 Identities=43% Similarity=0.818 Sum_probs=453.1
Q ss_pred CcchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCCCCCC--CCCCHHHHH
Q psy1016 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKP--APKDEDEMM 78 (718)
Q Consensus 1 MGVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~~~--~~~teee~f 78 (718)
||||+|||||++|||+|+. . +++.++| +|||||||||||||+|+|+++.+ .+.||++||
T Consensus 1 MGVP~ffrwl~~ryP~i~~-~-------~~~~~~p-----------e~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~ 61 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQ-L-------IDGSQIP-----------EFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVY 61 (1155)
T ss_pred CChHHHHHHHHHhCcchhh-c-------ccCCCCC-----------cCCeEEEecccceeeeecCCCCccccCCCHHHHH
Confidence 9999999999999999863 2 2333343 89999999999999999999876 589999999
Q ss_pred HHHHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCcc
Q psy1016 79 VAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDS 158 (718)
Q Consensus 79 ~~If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~fDS 158 (718)
.+||+|||+||++|||||+||||||||||||||||||+||||+|++++++ .++..++|..+|. +..|||
T Consensus 62 ~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~-------~~~~~~~g~~~~~----~~~fds 130 (1155)
T 3pie_A 62 SKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKA-------LQKAIENGDELPK----GEPFDS 130 (1155)
T ss_pred HHHHHHHHHHHHhcCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhhHH-------HHHHHhcCCcCCc----cccccc
Confidence 99999999999999999999999999999999999999999999987532 2234567877754 368999
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHH
Q psy1016 159 NCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238 (718)
Q Consensus 159 N~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLI 238 (718)
|||||||+||.+|+.+|++||++|+++||.|++++||+|||+||||||||||+|||++|++|+||||++|||||+|||||
T Consensus 131 n~ITPGT~FM~~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLI 210 (1155)
T 3pie_A 131 NAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLI 210 (1155)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHHHHhCC--
Q psy1016 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAM-- 316 (718)
Q Consensus 239 mL~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~~E~~~-- 316 (718)
||||+||+|||+||||++.++..... + .......|+||||++|||||..||+.
T Consensus 211 mL~L~thep~f~iLRe~v~f~~~~~~----------~---------------~~~~~~~f~~l~i~~LREyL~~ef~~~~ 265 (1155)
T 3pie_A 211 ILGLSTHDHHFCLLREEVTFGKRSSS----------V---------------KTLETQNFFLLHLSILREYLALEFEEIT 265 (1155)
T ss_pred HhhhccCCCcEEEEeeccccCccccc----------c---------------cccccCCeEEEEHHHHHHHHHHHHHhhc
Confidence 99999999999999999876432110 0 01235689999999999999999974
Q ss_pred CCCCCCCCccchhhHHhhhhcccccccCCCCCCccccchhHHHHHHHHHHHhhhcCCcccccccC---------------
Q psy1016 317 PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENG--------------- 381 (718)
Q Consensus 317 ~~l~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Yk~~l~~~~gYLt~~ek~--------------- 381 (718)
+.++|+||+|||||||||||||+|||||||||+|+|++|||+.|+++|++++++++||||+.++.
T Consensus 266 ~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~~g~i~~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~L~~~ 345 (1155)
T 3pie_A 266 DSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDF 345 (1155)
T ss_pred cccCCCccHhHhhcceeeehhhhCcccCCCCCccCcCCChHHHHHHHHHHHHHhcCCeeccCCEEcHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999865320
Q ss_pred ----------------CC-------C--CC---C-------CC------------CC-----------------CC----
Q psy1016 382 ----------------GG-------G--GR---G-------VK------------RS-----------------FD---- 393 (718)
Q Consensus 382 ----------------g~-------~--~~---~-------~k------------r~-----------------~~---- 393 (718)
++ + .+ + ++ +. ..
T Consensus 346 E~~~F~~~~~d~~~~~~k~~~~~~~~~~~r~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (1155)
T 3pie_A 346 EYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKEL 425 (1155)
T ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhHHHhhhhcccccchhHHhhhhccchhhhcccccccccccccccccccccCchhh
Confidence 00 0 00 0 00 00 00
Q ss_pred --------------------------C------C-----CCCCcccc----chhhhhhhh---hhhHHHHHHhhcCCCCC
Q psy1016 394 --------------------------D------V-----DESSEEEE----SNDEVRLWE---DGFKDRYYESKFDVPKD 429 (718)
Q Consensus 394 --------------------------~------~-----~~~~~~~~----~~d~v~l~e---~~~k~rYY~~Kf~~~~~ 429 (718)
. . .+++++.+ ..+..++++ ++||++||++|||++.+
T Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~k~rYY~~Kf~~~~~ 505 (1155)
T 3pie_A 426 VRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINXXXXXXXXXXXXXXXXXXXIYSERFVEWKDQYYKDKLDFSIN 505 (1155)
T ss_pred hhhhHHHHHHHHHhhcccccccccccccceecccccccccccccccccccccccccccchhhhhhHHHHHHHHhcCCCcC
Confidence 0 0 00000000 001123443 68999999999999998
Q ss_pred cHHHHHHHHHHHHHhhHHHhhhhcCCCCCcccccCCCCCcchhhhhhhccccccccCCCCCCCcHHHHHhhhhcccccch
Q psy1016 430 DIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMF 509 (718)
Q Consensus 430 d~e~~~~i~~~YleGL~WVL~YYy~GcpSW~WyYPYHYAPfaSDl~~i~~~~i~Fe~g~kPf~PfeQLl~Il~~~~n~~~ 509 (718)
+.++++++|++|+|||||||+|||+|||||+||||||||||||||+++.+++++|++|+ ||+|||||
T Consensus 506 ~~e~~~~v~~~YveGL~WVL~YYy~Gc~SW~WyYPYHYAPfasDl~~~~~~~i~F~~g~-Pf~PfeQL------------ 572 (1155)
T 3pie_A 506 DTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQ-PFKPFQQL------------ 572 (1155)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhCCCCCccccCccccccHHHHHHhhcccceeecCCC-CCCcHHHH------------
Confidence 88899999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred hcccccccccccccccccCCccccccchhhhhcchhHHHHHHHHHhhhhccceeeeeeeeeceeeecccccccccccccC
Q psy1016 510 FWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTY 589 (718)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~vlp~~s~~~~~~~~~ 589 (718)
|+||||+|+++
T Consensus 573 ---------------------------------------------------------------m~VLP~~S~~~------ 583 (1155)
T 3pie_A 573 ---------------------------------------------------------------MAVLPERSKNL------ 583 (1155)
T ss_pred ---------------------------------------------------------------hhhcChhhhcc------
Confidence 99999999999
Q ss_pred CCCcCCccchhHHHHHHHHhhcccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCCCCCcc
Q psy1016 590 PGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPII 669 (718)
Q Consensus 590 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spi~ 669 (718)
|| ++| |+|| +||+|||+
T Consensus 584 ---LP-------------------------------~~~---~~LM--------------------------~d~~SpIi 600 (1155)
T 3pie_A 584 ---IP-------------------------------VVY---RPLM--------------------------YDEHSPIL 600 (1155)
T ss_pred ---Cc-------------------------------HhH---HHhh--------------------------cCCCCchh
Confidence 99 999 9999 99999999
Q ss_pred ccCCCCccccCCCCcccceeEEeccCCChhHHHHHHhhhhcCCChhhhC
Q psy1016 670 DFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718 (718)
Q Consensus 670 dfyP~~f~~D~ngk~~~w~~v~llPfid~~~l~~~~~~~~~~l~~~e~~ 718 (718)
||||++|+|||||||++||||||||||||+|||+||++++++||+||++
T Consensus 601 dFYP~dF~iD~NGKk~~WqgVvlLPFIDe~rLl~a~~~~~~~Lt~eE~~ 649 (1155)
T 3pie_A 601 DFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKK 649 (1155)
T ss_pred hhCccceeecCCCCccceeeEEECCcCCHHHHHHHHhhccccCCHHHHh
Confidence 9999999999999999999999999999999999999999999999974
No 3
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-162 Score=1442.60 Aligned_cols=515 Identities=44% Similarity=0.786 Sum_probs=435.8
Q ss_pred CcchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCCCCCCC--CCCHHHHH
Q psy1016 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPA--PKDEDEMM 78 (718)
Q Consensus 1 MGVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~~~~--~~teee~f 78 (718)
||||+|||||++|||+++..+.+ ..+ .+|||||||||||||+|+|+++.+. +.+|++||
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~--------~~~-----------~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~ 61 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELARE--------HCI-----------PEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIF 61 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEET--------TTS-----------CCCSEEEEEHHHHHHHHHCC------CCCCHHHHH
T ss_pred CChhHHHHHHHHHCCchhhhccc--------cCC-----------CcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHH
Confidence 99999999999999987532211 112 2899999999999999999987654 47899999
Q ss_pred HHHHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCcc
Q psy1016 79 VAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDS 158 (718)
Q Consensus 79 ~~If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~fDS 158 (718)
++||+|||+||++|||||+||||||||||||||||||+||||+|+++++.. ++..++|... +...|||
T Consensus 62 ~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~-------~~~~~~g~~~-----~~~~fds 129 (1140)
T 2y35_A 62 QEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQE-------AKAAQRGELR-----EHERFDS 129 (1140)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHC------------CCCS
T ss_pred HHHHHHHHHHHheeccceeEEEEecCCCchhHHHHHHHHHhhhhhhhhhhH-------HHHhhcCCcc-----ccccCCc
Confidence 999999999999999999999999999999999999999999999875322 2234555432 2468999
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHH
Q psy1016 159 NCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238 (718)
Q Consensus 159 N~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLI 238 (718)
|||||||+||.+|+++|++||++|+++||.|++++||+|||+||||||||||+|||+++++|+||||++|||||+|||||
T Consensus 130 n~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLI 209 (1140)
T 2y35_A 130 NCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALI 209 (1140)
T ss_dssp GGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHhccCccccceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHHHHhCC-C
Q psy1016 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAM-P 317 (718)
Q Consensus 239 mL~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~~E~~~-~ 317 (718)
||||+||+|||+||||++.+++.. +. .......|+++||++|||||..||.. .
T Consensus 210 mL~L~the~~f~ilRe~v~f~~~~------------~~--------------~~~~~~~f~~l~i~~lReyL~~ef~~~~ 263 (1140)
T 2y35_A 210 ILGLCTHELHFVVLREEVKFGRNV------------KR--------------TSVEETRFFLLHLGLLREYLELEFDALR 263 (1140)
T ss_dssp HHHHHTTCSSEEEEEESSCTTCCT------------TC--------------CCGGGCEEEEEEHHHHHHHHHHHGGGGC
T ss_pred HHHHccCCCcEEEeeccccccccc------------cc--------------ccccccceEEEEehHHHHHHHHHhhhhc
Confidence 999999999999999998764311 00 01134689999999999999999974 3
Q ss_pred CCCCCCCccchhhHHhhhhcccccccCCCCCCccccchhHHHHHHHHHHHhhhcCCcccccccC----------------
Q psy1016 318 NLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENG---------------- 381 (718)
Q Consensus 318 ~l~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Yk~~l~~~~gYLt~~ek~---------------- 381 (718)
..++++|+||+||||||||||+|||||||||+|+|++||++.|+++|++.+++++||||+.++.
T Consensus 264 ~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~~gai~~L~~~Y~~~~~~~~gyl~~~g~in~~~l~~~l~~l~~~E 343 (1140)
T 2y35_A 264 TDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVE 343 (1140)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTTTTHHHHHHHHHHHHGGGSSSCSEETTEECHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHhCCccCCCCCccccCCCHHHHHHHHHHHHHHHcCCcccCCCEEcHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999876431
Q ss_pred -------C--CCCCCCCCC--------------C-CC----------CCCCCccccchhhhh--hh-hhhhHHHHHHhhc
Q psy1016 382 -------G--GGGRGVKRS--------------F-DD----------VDESSEEEESNDEVR--LW-EDGFKDRYYESKF 424 (718)
Q Consensus 382 -------g--~~~~~~kr~--------------~-~~----------~~~~~~~~~~~d~v~--l~-e~~~k~rYY~~Kf 424 (718)
. .+....|.. . .+ ..+++.+++..++.. .+ .++||++||++||
T Consensus 344 ~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~~YY~~Kf 423 (1140)
T 2y35_A 344 LDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAVLLKEFQNYKRNFYRNKF 423 (1140)
T ss_dssp HHHHHHHSCC------------------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcchhcccchhhccccccchhHHHHHHHhhhhccccccccccchhhhhhhhhhhHHHHHHHHHHh
Confidence 0 000000000 0 00 000111112222222 22 2689999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhHHHhhhhcCCCCCcccccCCCCCcchhhhhhhccccccccCCCCCCCcHHHHHhhhhcc
Q psy1016 425 DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHF 504 (718)
Q Consensus 425 ~~~~~d~e~~~~i~~~YleGL~WVL~YYy~GcpSW~WyYPYHYAPfaSDl~~i~~~~i~Fe~g~kPf~PfeQLl~Il~~~ 504 (718)
+.+.. .++++++|++|+|||||||+|||+|||||+||||||||||||||.++.+++++|++|+ ||+|||||
T Consensus 424 ~~~~~-~~~~~~~~~~YveGl~Wvl~YYy~G~~SW~WyYpyhYAP~~sDl~~~~~~~i~F~~g~-Pf~PfeQL------- 494 (1140)
T 2y35_A 424 KRDPN-DELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGT-PFLPFQQL------- 494 (1140)
T ss_dssp CSCCC-HHHHHHHHHHHHHHHHHHHHHHHTSCSCSSCCCCCSSCCCGGGCCCCTTCCCCCCCCC-CCCHHHHH-------
T ss_pred CCCCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCcCchHHHHHhhccccccccCCC-CCChHHHH-------
Confidence 98865 4678999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred cccchhcccccccccccccccccCCccccccchhhhhcchhHHHHHHHHHhhhhccceeeeeeeeeceeeeccccccccc
Q psy1016 505 DNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFS 584 (718)
Q Consensus 505 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~vlp~~s~~~~ 584 (718)
|+|||++|+++
T Consensus 495 --------------------------------------------------------------------m~VLP~~S~~~- 505 (1140)
T 2y35_A 495 --------------------------------------------------------------------LAVLPAASAKL- 505 (1140)
T ss_dssp --------------------------------------------------------------------HHHCCGGGGGG-
T ss_pred --------------------------------------------------------------------HhhcChhhhhh-
Confidence 99999999999
Q ss_pred ccccCCCCcCCccchhHHHHHHHHhhcccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCC
Q psy1016 585 RMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQ 664 (718)
Q Consensus 585 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (718)
|| ++| |+|| ++|
T Consensus 506 --------LP-------------------------------~~~---~~Lm--------------------------~~~ 517 (1140)
T 2y35_A 506 --------LP-------------------------------VAY---HDLM--------------------------LLP 517 (1140)
T ss_dssp --------SC-------------------------------GGG---HHHH--------------------------HCT
T ss_pred --------CC-------------------------------HHH---HHhh--------------------------cCC
Confidence 99 999 9999 999
Q ss_pred CCCccccCCCCccccCCCCcccceeEEeccCCChhHHHHHHhhhhcCCChhhhC
Q psy1016 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718 (718)
Q Consensus 665 ~Spi~dfyP~~f~~D~ngk~~~w~~v~llPfid~~~l~~~~~~~~~~l~~~e~~ 718 (718)
+|||+||||++|++||||||++||||||||||||+||++|++++++.||+||++
T Consensus 518 ~Spi~dfYP~~f~iD~nGk~~~we~VvllPFIde~~Ll~a~~~~~~~Lt~eE~~ 571 (1140)
T 2y35_A 518 TSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERE 571 (1140)
T ss_dssp TCTTGGGSCSSCCCCCSSCCSGGGSCCCCCCCCHHHHHHTTHHHHHHSCHHHHH
T ss_pred CCchhHhCccceeecCCCCcCcEEeEEECCcCCHHHHHHHHHhccccCCHHHHh
Confidence 999999999999999999999999999999999999999999999999999973
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=98.48 E-value=1.4e-07 Score=100.57 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=77.0
Q ss_pred eEEEecccccccccCCC----CCCCCCCHHHHHHHHHHHHHHHHhhh-ccceeEEEEecCCCcchhhHHHHHHhhhhhHH
Q psy1016 50 NLYLDMNGIIHPCTHPE----DKPAPKDEDEMMVAIFECIDRLFRIV-RPRKLLYMAIDGVAPRAKMNQQRSRRFRASKE 124 (718)
Q Consensus 50 nLYLDMNgIIH~c~h~~----~~~~~~teee~f~~If~yId~L~~~V-rPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e 124 (718)
-+-||.++.||.+.|.- ..+........-..+..++.++++++ .|-+ .++++||.+|-.|......||-+...
T Consensus 23 ~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~-pv~VFDG~~~~~K~~~~~~R~~~r~~- 100 (340)
T 1b43_A 23 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIK-PVYVFDGEPPEFKKKELEKRREAREE- 100 (340)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCE-EEEEECCSCCCCSSCSSTTCCCCTTH-
T ss_pred EEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCCE-EEEEecCCCchhhhhhHHHHHHHHHH-
Confidence 78999999999886531 11110001111123444444444444 4554 56799999997776654444433221
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccCCCC--ccccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCC
Q psy1016 125 TAEKIAEVARIREKLLADGCILPPEKEKGSHF--DSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 202 (718)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~f--DSN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VP 202 (718)
+.+... +. .+.|..-.+ ..| .++.||| .....+.+.|+. + ++.+|. .|
T Consensus 101 ~~~~~~------~~-yk~g~~~~~-----~~~~~~~~~vt~--~~~~~~~~lL~~-----~-------gip~i~----ap 150 (340)
T 1b43_A 101 AEEKWR------EA-LEKGEIEEA-----RKYAQRATRVNE--MLIEDAKKLLEL-----M-------GIPIVQ----AP 150 (340)
T ss_dssp HHHHHH------HH-HHHSCHHHH-----HHHHHTSGGGTH--HHHHHHHHHHHH-----H-------TCCEEE----CS
T ss_pred HHHHHH------HH-HHcCCHHHH-----HHHHHhcCCCCH--HHHHHHHHHHHH-----c-------CCcEEE----cC
Confidence 111110 00 011110000 011 1233443 222223333322 1 455665 47
Q ss_pred CchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHHHHh
Q psy1016 203 GEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLG 241 (718)
Q Consensus 203 GEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLImL~ 241 (718)
+|+|.=|-..-|+- ..++|++.|+|+++++
T Consensus 151 ~EADa~iA~La~~g---------~~~~i~S~D~D~l~~g 180 (340)
T 1b43_A 151 SEGEAQAAYMAAKG---------SVYASASQDYDSLLFG 180 (340)
T ss_dssp SCHHHHHHHHHHHT---------SSSEEECSSSHHHHTT
T ss_pred hhHHHHHHHHHHcC---------CEEEEEccCCCcceec
Confidence 99999888776642 3579999999999987
No 5
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=98.31 E-value=7.5e-06 Score=87.24 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=25.1
Q ss_pred hHHhhhhcccccccCCCCCCccccchhHHHHHHHH
Q psy1016 330 DDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLY 364 (718)
Q Consensus 330 DDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Y 364 (718)
+.||.+|.|+|+|++|.+|++ ..-..-.|+..|
T Consensus 223 ~q~id~~~L~GsD~ipGv~Gi--G~KtA~kLl~~~ 255 (336)
T 1rxw_A 223 EQLIDIAILVGTDYNEGVKGV--GVKKALNYIKTY 255 (336)
T ss_dssp HHHHHHHHHHCBTTBCCCTTC--CHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCCCCc--CHHHHHHHHHHc
Confidence 578889999999999999985 443344455555
No 6
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=98.27 E-value=2e-06 Score=91.25 Aligned_cols=92 Identities=26% Similarity=0.473 Sum_probs=59.7
Q ss_pred ccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHHHHhhhcCCCcEEEeccccCCCCCCCCcccccC
Q psy1016 191 GIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQM 270 (718)
Q Consensus 191 ~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLImL~LatHe~~f~ILRE~~~~~~~~~~~~c~q~ 270 (718)
++.+|. .|||+|-=|-..-++ +..++|++.|.|+++++ + +++ +|.. ..
T Consensus 143 gi~~i~----apgEAD~~ia~La~~---------g~~~~I~S~D~Dll~~~-~---~~v--~~~~-~~------------ 190 (326)
T 1a76_A 143 GIPYVE----APSEGEAQASYMAKK---------GDVWAVVSQDYDALLYG-A---PRV--VRNL-TT------------ 190 (326)
T ss_dssp TCCEEE----CSSCHHHHHHHHHHT---------TSSSEEECSSSGGGGGT-C---SEE--EESS-SS------------
T ss_pred CCCeEE----CCccHHHHHHHHHHC---------CCEEEEecCCcccceec-C---CEE--EEee-cC------------
Confidence 344553 499999977766664 24579999999999997 2 343 3321 00
Q ss_pred CcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHHHHhCCCCCCCCCCccchhhHHhhhhcccccccCC-CCCC
Q psy1016 271 GHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLP-HLPS 349 (718)
Q Consensus 271 g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~~E~~~~~l~f~~d~ERiIDDFVfLcflvGNDFLP-hlPs 349 (718)
....+..++...+.+ ++.+ + -+.||.+|.|+|+||+| .+|+
T Consensus 191 -----------------------~~~~~~~~~~~~v~~----~~gl-------~----~~q~id~~~L~GsD~~p~GvpG 232 (326)
T 1a76_A 191 -----------------------TKEMPELIELNEVLE----DLRI-------S----LDDLIDIAIFMGTDYNPGGVKG 232 (326)
T ss_dssp -----------------------CSSCCEEEEHHHHHH----HHTC-------C----HHHHHHHHHHHCCTTSTTTTTT
T ss_pred -----------------------CCCceEEEEHHHHHH----HcCC-------C----HHHHHHHHHHcCCCCCCCCCCC
Confidence 001344566554433 3432 1 35788899999999999 9999
Q ss_pred ccc
Q psy1016 350 LEI 352 (718)
Q Consensus 350 l~I 352 (718)
+-.
T Consensus 233 iG~ 235 (326)
T 1a76_A 233 IGF 235 (326)
T ss_dssp CCH
T ss_pred cCH
Confidence 853
No 7
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=98.10 E-value=1.3e-05 Score=86.27 Aligned_cols=170 Identities=19% Similarity=0.319 Sum_probs=89.4
Q ss_pred CcchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCC------CCCCCCCCH
Q psy1016 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHP------EDKPAPKDE 74 (718)
Q Consensus 1 MGVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~------~~~~~~~te 74 (718)
|||.|+..||...-+.+.. + ...|. -|=||..+.+|..... .+. +.
T Consensus 1 MGI~GL~~~L~~~~~~~~l---~----~l~Gk-----------------~vaIDas~wL~~~~~~~~~~l~~G~--~t-- 52 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHV---R----KYKGQ-----------------VVAVDTYCWLHKGAIACAEKLAKGE--PT-- 52 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEG---G----GGTTS-----------------EEEEETHHHHHHHHHHTHHHHHTTC--CC--
T ss_pred CCcchHHHHHHhhCCcCCH---H----HhCCc-----------------EEEEecHHHHHHhhhccchhhcCCC--Cc--
Confidence 9999999999876543211 1 12232 5678999999874321 111 11
Q ss_pred HHHHHHHHHHHHHH-HhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccC
Q psy1016 75 DEMMVAIFECIDRL-FRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKG 153 (718)
Q Consensus 75 ee~f~~If~yId~L-~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~ 153 (718)
..+..-+.+.+..| -.-|+| ++.+||.+|-.|-....+||-+..... ++.. ++.++|..-. ..
T Consensus 53 ~~l~~~~~r~l~~L~~~gI~P----vfVFDG~~~p~Kk~~~~~Rr~~r~~~~-~~~~-------~~~~~g~~~~----a~ 116 (352)
T 3qe9_Y 53 DRYVGFCMKFVNMLLSHGIKP----ILVFDGCTLPSKKEVERSRRERRQANL-LKGK-------QLLREGKVSE----AR 116 (352)
T ss_dssp CHHHHHHHHHHHHHHHTTCEE----EEEECCSCCTTTHHHHHHHHHHHHHHH-HHHH-------HHTTSSCCHH----HH
T ss_pred HHHHHHHHHHHHHHHHcCCEE----EEEECCCCcHHHHHHHHHHHHHHHHHH-HHHH-------HHHHhCCHHH----HH
Confidence 12222233333332 223444 566999999888776665654432211 1110 1112222100 00
Q ss_pred CCC-ccccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEc
Q psy1016 154 SHF-DSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCG 232 (718)
Q Consensus 154 ~~f-DSN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYG 232 (718)
..| .+..||| .. ...++..+.. -++.++.+ |+|+|-=|--.-++ .....|++
T Consensus 117 ~~f~~~~~vt~--~~----~~~i~~~L~~--------~gIp~i~a----p~EADaqiA~La~~---------g~~~~I~S 169 (352)
T 3qe9_Y 117 ECFTRSINITH--AM----AHKVIKAARS--------QGVDCLVA----PYEADAQLAYLNKA---------GIVQAIIT 169 (352)
T ss_dssp HHHGGGCCCCH--HH----HHHHHHHHHH--------TTCEEEEC----SSCHHHHHHHHHHT---------TSCSEEEC
T ss_pred HHHhhcCCCCH--HH----HHHHHHHHHH--------cCCcEEEC----CcchHHHHHHHHHC---------CCeEEEEe
Confidence 112 1235666 22 2333333321 25677764 79999977665552 24579999
Q ss_pred CChhHHHHh
Q psy1016 233 ADADLIMLG 241 (718)
Q Consensus 233 lDADLImL~ 241 (718)
.|.|+++++
T Consensus 170 ~D~Dll~~~ 178 (352)
T 3qe9_Y 170 EDSALLAFG 178 (352)
T ss_dssp SCGGGGGGT
T ss_pred CCcCccccc
Confidence 999998887
No 8
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=97.87 E-value=8.7e-05 Score=80.25 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=25.4
Q ss_pred hHHhhhhcccccccCC-CCCCccccchhHHHHHHHHH
Q psy1016 330 DDWVFMCFFVGNDFLP-HLPSLEIREGAVDRLVNLYK 365 (718)
Q Consensus 330 DDFVfLcflvGNDFLP-hlPsl~I~egaid~Li~~Yk 365 (718)
+-||-+|.|+|+||+| .+|++ ..-..-.|+..|.
T Consensus 238 ~q~id~~~L~GsDy~p~GVpGI--G~KtA~kLl~~~g 272 (363)
T 3ory_A 238 ENLIDIGILLGTDYNPDGFEGI--GPKKALQLVKAYG 272 (363)
T ss_dssp HHHHHHHHHHCBTTBTTCSTTC--CHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCCCCCc--CHHHHHHHHHHcC
Confidence 4677899999999999 99986 4433445666664
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=97.72 E-value=0.00017 Score=78.27 Aligned_cols=230 Identities=20% Similarity=0.339 Sum_probs=114.2
Q ss_pred cchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCCCCC--CCCCCHH----
Q psy1016 2 GVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDK--PAPKDED---- 75 (718)
Q Consensus 2 GVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~~--~~~~tee---- 75 (718)
||+++...|...-|.+++.+- -.+..| --|-||.+++||.+.|.-.. ....+.+
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~---l~~l~g-----------------~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t 60 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIREND---IKSYFG-----------------RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETT 60 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEEC---GGGGTT-----------------CCEEEEHHHHHHHHHSCC-------------CC
T ss_pred CcChhHHHHHHhccccceeeC---HHHcCC-----------------CEEEEEchHHHHHHHHhCCCcccccCcCCCCCc
Confidence 999999999999886553210 001111 16889999999998875311 0011111
Q ss_pred HHHHHHHHHHHHHHhh-hccceeEEEEecCCCcchhh--HHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy1016 76 EMMVAIFECIDRLFRI-VRPRKLLYMAIDGVAPRAKM--NQQRS-RRFRASKETAEKIAEVARIREKLLADGCILPPEKE 151 (718)
Q Consensus 76 e~f~~If~yId~L~~~-VrPrKllyiAIDGVAPrAKM--nQQRs-RRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~ 151 (718)
.-+..++..+-+|+.. ++| +| ++||..|-.|- ..+|. +|-.+..+.. ++..+|. |.+
T Consensus 61 ~~l~g~~~~~~~ll~~~i~P---~~-VFDG~~~~~K~~~~~~yk~~R~~~~~~~~-----------~~~~~g~--~~~-- 121 (379)
T 1ul1_X 61 SHLMGMFYRTIRMMENGIKP---VY-VFDGKPPQLKSGELAKRSERRAEAEKQLQ-----------QAQAAGA--EQE-- 121 (379)
T ss_dssp HHHHHHHHHHHHHHHTTCCE---EE-EECCSCCSCCCCCCCCC-------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCCe---EE-EEeCCCcccccchHHHHHhhhhHHHHHHH-----------HHHHcCC--HHH--
Confidence 1122333333344444 666 33 89999985553 23332 2211111000 0111121 100
Q ss_pred cCCCCccccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEE
Q psy1016 152 KGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLC 231 (718)
Q Consensus 152 ~~~~fDSN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIY 231 (718)
-..|...++..-.+-+..+.+.|+. + ++.+|. .|||+|-=|--.-++- ...+|.
T Consensus 122 -~~~~~~~~~~vt~~~~~~~~~lL~~-----~-------Gi~~i~----apgEADd~iA~La~~g---------~~~~ii 175 (379)
T 1ul1_X 122 -VEKFTKRLVKVTKQHNDECKHLLSL-----M-------GIPYLD----APSEAEASCAALVKAG---------KVYAAA 175 (379)
T ss_dssp --------CCCCCCSCHHHHHHHHHH-----H-------TCCEEE----CSSCHHHHHHHHHHHT---------SSSEEE
T ss_pred -HHHHHhhccCCCHHHHHHHHHHHHH-----c-------CCCeec----CCCcHHHHHHHHHhcC---------CeEEEE
Confidence 0122222222222333444444432 1 344554 4999999888777652 247899
Q ss_pred cCChhHHHHhhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHH
Q psy1016 232 GADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLE 311 (718)
Q Consensus 232 GlDADLImL~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~ 311 (718)
+.|.|+++++ + +++ +|.. ..... ....+..++...+.+
T Consensus 176 S~D~Dll~~g-~---~~v--~~~~-~~~~~--------------------------------~k~~~~~~~~~~v~~--- 213 (379)
T 1ul1_X 176 TEDMDCLTFG-S---PVL--MRHL-TASEA--------------------------------KKLPIQEFHLSRILQ--- 213 (379)
T ss_dssp CSCTHHHHTT-C---SEE--EECS-SCCC---------------------------------CCCCEEEEEHHHHHH---
T ss_pred ecCcCccccc-c---ceE--EEEe-ccccc--------------------------------CcCCeEEEeHHHHHH---
Confidence 9999999998 2 333 3321 10000 012344555554433
Q ss_pred HHhCCCCCCCCCCccchhhHHhhhhcccccccCCCCCCc
Q psy1016 312 KELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSL 350 (718)
Q Consensus 312 ~E~~~~~l~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl 350 (718)
++.+ + -+-||.+|.|+|+|+.|++|++
T Consensus 214 -~~gl-------~----~~q~id~~~L~G~D~~d~IpGI 240 (379)
T 1ul1_X 214 -ELGL-------N----QEQFVDLCILLGSDYCESIRGI 240 (379)
T ss_dssp -HHTC-------C----HHHHHHHHHHHHCSSSCCCTTC
T ss_pred -HhCC-------C----HHHHHHHHHHhCCCcCCCCCCc
Confidence 3332 1 2568889999999999999986
No 10
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=97.68 E-value=0.00029 Score=75.57 Aligned_cols=245 Identities=19% Similarity=0.280 Sum_probs=124.3
Q ss_pred cchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCCCC--C-CCCCCHHHHH
Q psy1016 2 GVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPED--K-PAPKDEDEMM 78 (718)
Q Consensus 2 GVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~--~-~~~~teee~f 78 (718)
||.|+...|.+.-|.+++.+- -.+..|. -+-||.++.||.+.|.-. . +......+.-
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~---l~~l~gk-----------------~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T 60 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIREND---IKSYFGR-----------------KVAIDASMSIYQFLIAVRQGGDVLQNEEGETT 60 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEE---GGGGTTC-----------------EEEEEHHHHHHHHHHHCEETTEECBCTTSCBC
T ss_pred CchhHHHHHHHhhhhcccccc---HHHhCCC-----------------EEEEecHHHHHHHHHccccccCCCCCCCCCCc
Confidence 899999999999998765431 0111121 578999999998876321 0 1100011111
Q ss_pred HHHHHHHHHHHhhhc-cceeEEEEecCCCcchh--hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCC
Q psy1016 79 VAIFECIDRLFRIVR-PRKLLYMAIDGVAPRAK--MNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSH 155 (718)
Q Consensus 79 ~~If~yId~L~~~Vr-PrKllyiAIDGVAPrAK--MnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~ 155 (718)
..|+.++.+++++++ --+-+| ++||.+|-.| +..+|..|-..+.+..+ +..++| .|.+- ..
T Consensus 61 ~al~g~~~~~~~ll~~~i~P~~-VFDg~~~~~r~~~~~~yk~~R~~~~~~~~----------~a~r~~--~pe~l---~~ 124 (341)
T 3q8k_A 61 SHLMGMFYRTIRMMENGIKPVY-VFDGKPPQLKSGELAKRSERRAEAEKQLQ----------QAQAAG--AEQEV---EK 124 (341)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEE-EECCCCCGGGHHHHHHHHHHHHHHHHHHH----------HHHTTC--CHHHH---HH
T ss_pred hHHHHHHHHHHHHHHCCCCceE-EEeCCCcccchhhhHHHHHHHhHhHHHHH----------HHHhcC--CHHHH---HH
Confidence 344444444444443 222244 7999999554 55555433222221110 001111 00000 00
Q ss_pred Cc--cccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcC
Q psy1016 156 FD--SNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGA 233 (718)
Q Consensus 156 fD--SN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGl 233 (718)
|- +..||+. -+..+.+.|+. + ++.+|.+ |||+|-=|--.-++ ....+|.+.
T Consensus 125 ~~~~~~~vt~~--q~~~~~~lL~~-----~-------gip~i~a----p~EADd~ia~La~~---------g~v~~i~s~ 177 (341)
T 3q8k_A 125 FTKRLVKVTKQ--HNDECKHLLSL-----M-------GIPYLDA----PSEAEASCAALVKA---------GKVYAAATE 177 (341)
T ss_dssp HHHHTCCCCHH--HHHHHHHHHHH-----H-------TCCEEEC----SSCHHHHHHHHHHT---------TSSSEEECS
T ss_pred HHhhcccCCHH--HHHHHHHHHHH-----c-------CCCEEEC----CccHHHHHHHHHhc---------CCeEEEEcC
Confidence 11 1123321 22222322222 1 3456653 89999988777664 135678899
Q ss_pred ChhHHHHhhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHHHH
Q psy1016 234 DADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKE 313 (718)
Q Consensus 234 DADLImL~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~~E 313 (718)
|.|+++++- ++ ++|.. .++.. ....+..++...+.+ +
T Consensus 178 D~D~l~~~~----~~--v~~~~-~~~~~--------------------------------~~~~~~~~~~~~v~~----~ 214 (341)
T 3q8k_A 178 DMDCLTFGS----PV--LMRHL-TASEA--------------------------------KKLPIQEFHLSRILQ----E 214 (341)
T ss_dssp CTHHHHTTC----SE--EEESC-CCCSS--------------------------------CCCEEEEEEHHHHHH----H
T ss_pred CccccccCC----cE--EEEcc-ccccc--------------------------------CCCceEEEcHHHHHH----H
Confidence 999999972 33 34431 01000 012244555544433 3
Q ss_pred hCCCCCCCCCCccchhhHHhhhhcccccccCCCCCCccccchhHHHHHHHHH
Q psy1016 314 LAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYK 365 (718)
Q Consensus 314 ~~~~~l~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Yk 365 (718)
+.+ +. +-||-+|.|+|+|++|.+|++ ..-..-.|+..|.
T Consensus 215 ~gl-------~~----~q~id~~~L~G~D~~~gipGi--G~KtA~kll~~~g 253 (341)
T 3q8k_A 215 LGL-------NQ----EQFVDLCILLGSDYCESIRGI--GPKRAVDLIQKHK 253 (341)
T ss_dssp HTC-------CH----HHHHHHHHHHCCSSSCCCTTC--CHHHHHHHHHHHC
T ss_pred hCC-------CH----HHHHHHHHhcCCCCCCCCCCc--cHHHHHHHHHHcC
Confidence 432 22 456779999999999999976 4433334555553
No 11
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=97.54 E-value=0.00044 Score=74.00 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=64.3
Q ss_pred eEEEecccccccccCCCCC----CCC---CCHHHHHHHHHHHHHHHHhh-hccceeEEEEecCCCcchhhH--HHHHHhh
Q psy1016 50 NLYLDMNGIIHPCTHPEDK----PAP---KDEDEMMVAIFECIDRLFRI-VRPRKLLYMAIDGVAPRAKMN--QQRSRRF 119 (718)
Q Consensus 50 nLYLDMNgIIH~c~h~~~~----~~~---~teee~f~~If~yId~L~~~-VrPrKllyiAIDGVAPrAKMn--QQRsRRF 119 (718)
-|-||.++.+|.+.|.-.. +.. -.....+..++..+-+|+.. ++| ++++||..|-.|-. .+|..+-
T Consensus 20 ~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~P----v~vFDG~~~~~r~~~~~~yk~~R 95 (346)
T 2izo_A 20 RVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIP----IYVFDGKPPEQKSEELERRRKAK 95 (346)
T ss_dssp EEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEE----EEEECC-----------------
T ss_pred EEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcE----EEEECCCCcchhhhHHHHHHHHH
Confidence 6889999999997664311 110 00112233444444455655 788 68999998855443 3332221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCccccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCC
Q psy1016 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDA 199 (718)
Q Consensus 120 rsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~fDSN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds 199 (718)
..+.+. +. ++...|..- ....|...++..-.+....+.+.|+.+ ++.+|.
T Consensus 96 ~~~~~~---------l~-~~~~~g~~~-----~a~~~~~~~~~vt~~~~~~~~~lL~~~------------gi~~i~--- 145 (346)
T 2izo_A 96 EEAERK---------LE-RAKSEGKIE-----ELRKYSQAILRLSNIMVEESKKLLRAM------------GIPIVQ--- 145 (346)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHH------------TCCEEE---
T ss_pred HHhHHH---------HH-HHHhcCCHH-----HHHHHHhhccCCCHHHHHHHHHHHHHC------------CCCEEE---
Confidence 111110 00 011122110 011222222222223444444444321 345565
Q ss_pred CCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHHHHh
Q psy1016 200 NVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLG 241 (718)
Q Consensus 200 ~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLImL~ 241 (718)
.|||+|-=|--.-+. ....+|++.|.|+++++
T Consensus 146 -ap~EADa~ia~La~~---------g~~~~I~S~D~D~l~~~ 177 (346)
T 2izo_A 146 -APSEGEAEAAYLNKL---------GLSWAAASQDYDAILFG 177 (346)
T ss_dssp -CSSCHHHHHHHHHHT---------TSSSEEECSSSHHHHTT
T ss_pred -cCCcHHHHHHHHHhC---------CCeEEEECCCCCcceec
Confidence 499999987666552 24579999999999987
No 12
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=96.36 E-value=0.067 Score=56.23 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=83.1
Q ss_pred eEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHH
Q psy1016 50 NLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKI 129 (718)
Q Consensus 50 nLYLDMNgIIH~c~h~~~~~~~~teee~f~~If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~ 129 (718)
-+-||.++++|.+.|..+.. + ....+++.+-+++...+|..++ +|+||.+| +-|..-|-.-|.+....
T Consensus 21 lllIDg~~llyRa~~~~~G~-p-----av~Gf~~~l~~ll~~~~p~~~v-vvFD~~~~-----tfR~~~~~~YKa~R~~~ 88 (290)
T 1exn_A 21 LMIVDGTNLGFRFKHNNSKK-P-----FASSYVSTIQSLAKSYSARTTI-VLGDKGKS-----VFRLEHLPEYKGNRDEK 88 (290)
T ss_dssp EEEEEHHHHHHHHHHHCSSS-C-----CHHHHHHHHHHHHHHTTEEEEE-EECCBSCC-----HHHHHHCTTTTHHHHHH
T ss_pred EEEEECcHHHHHHHhCCCCc-h-----HHHHHHHHHHHHHHHcCCCeEE-EEEcCCCc-----hhhhhCcHHHHcCCCCC
Confidence 68999999999998843322 2 3455667777777788998764 89998766 44554444333221111
Q ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCccccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCC-chhhH
Q psy1016 130 AEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPG-EGEHK 208 (718)
Q Consensus 130 ~~~~~~~~~l~~~g~~~p~~~~~~~~fDSN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPG-EGEHK 208 (718)
. .+ .... -+.|..++...+++-+..= --++.++ ..|| |++-=
T Consensus 89 p----------~~-----------~~~~----------~e~L~~q~~~~ikell~~~--~~gip~i----~~~g~EADDv 131 (290)
T 1exn_A 89 Y----------AQ-----------RTEE----------EKALDEQFFEYLKDAFELC--KTTFPTF----TIRGVEADDM 131 (290)
T ss_dssp H----------HT-----------SCHH----------HHHHHHHHHHHHHHHHHHH--TTTSCEE----CCTTBCHHHH
T ss_pred C----------cc-----------cccc----------chhHHHhhHHHHHHHHHhh--CCCCcEE----EECCcCHHHH
Confidence 0 00 0000 1223333111222222110 0133343 3699 99988
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcCChhHHHHhhhcCCCcEEEe
Q psy1016 209 IMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTII 252 (718)
Q Consensus 209 ImdfIR~~r~~p~ydpNt~HcIYGlDADLImL~LatHe~~f~IL 252 (718)
|--.-++.... ....+|++.|-|+..|. .+++.++
T Consensus 132 iatLa~~~~~~-----G~~v~IvS~DkDl~Qlv----~~~v~v~ 166 (290)
T 1exn_A 132 AAYIVKLIGHL-----YDHVWLISTDGDWDTLL----TDKVSRF 166 (290)
T ss_dssp HHHHHHHHGGG-----SSCEEEECSCGGGGGGC----CSSEEEE
T ss_pred HHHHHHHHHHC-----CCcEEEEeCCCChhhcC----CCCEEEE
Confidence 87777765432 23578999999997766 3667765
No 13
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=52.46 E-value=3.7 Score=49.02 Aligned_cols=37 Identities=43% Similarity=0.754 Sum_probs=33.7
Q ss_pred CCcCCccchhHHHHHHHHhhcccchHHHHHhhhhhHH
Q psy1016 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTET 627 (718)
Q Consensus 591 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (718)
|+|.++|.|.+++++.+++.|+.-|++||++|.+.+.
T Consensus 370 gYlt~~G~inl~rl~~~l~~L~~~E~~iF~~r~~~e~ 406 (899)
T 3fqd_A 370 GYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQED 406 (899)
T ss_dssp SCSEETTEECHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred CeeecCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999999999999988764
No 14
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=50.48 E-value=9.2 Score=46.97 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=37.5
Q ss_pred CCcCCccchhHHHHHHHHhhcccchHHHHHhhhhhHHHHHHH
Q psy1016 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMR 632 (718)
Q Consensus 591 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (718)
|+|.++|.|.++++|.+++.|+--|+++|++|...+.||+-+
T Consensus 322 gYlt~~G~inl~rl~~~l~~L~~~E~~~F~~~~~d~~~~~~k 363 (1155)
T 3pie_A 322 GYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQ 363 (1155)
T ss_pred CeeccCCEEcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 458999999999999999999999999999999888776533
No 15
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=46.67 E-value=9.4 Score=25.75 Aligned_cols=19 Identities=32% Similarity=0.801 Sum_probs=16.3
Q ss_pred CCCCcccccCCcccccccC
Q psy1016 261 ARPCDVCGQMGHEMKECVG 279 (718)
Q Consensus 261 ~~~~~~c~q~g~~~~~c~~ 279 (718)
...|..||+.||...+|..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTC
T ss_pred CCeeEeCCCCCcccccCCC
Confidence 3569999999999999975
No 16
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=45.75 E-value=13 Score=25.66 Aligned_cols=20 Identities=30% Similarity=0.775 Sum_probs=16.8
Q ss_pred CCCCCcccccCCcccccccC
Q psy1016 260 QARPCDVCGQMGHEMKECVG 279 (718)
Q Consensus 260 ~~~~~~~c~q~g~~~~~c~~ 279 (718)
+...|..||+.||...+|..
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCS
T ss_pred CCCEEEECCccccCHhHCcc
Confidence 34579999999999999965
No 17
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=36.17 E-value=30 Score=23.90 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHhc
Q psy1016 164 GTPFMARLSACLHYYIHDRLNN 185 (718)
Q Consensus 164 GT~FM~kL~~~L~~yI~~kl~~ 185 (718)
|++||.+|.+.|.. +.+||.+
T Consensus 3 gkei~~kiK~kl~~-akdK~k~ 23 (26)
T 2kfe_A 3 GREFMSNLKEKLSG-VKEKMKN 23 (26)
T ss_dssp THHHHHHHHHHHHH-HHHHTTT
T ss_pred hhHHHHHHHHHHHH-HHHHHHc
Confidence 89999999999987 6777764
No 18
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=26.90 E-value=31 Score=25.90 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=18.4
Q ss_pred CCCCCcccccCCcccccccCCC
Q psy1016 260 QARPCDVCGQMGHEMKECVGLD 281 (718)
Q Consensus 260 ~~~~~~~c~q~g~~~~~c~~~~ 281 (718)
....|..||+.||-..+|..-.
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCeeeECCCCCcchhhCcCCc
Confidence 3468999999999999997644
No 19
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=23.45 E-value=1.1e+02 Score=25.05 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=40.6
Q ss_pred CCCCccEEEEcCCCCCCchhhHHHHHHHHhhcC--CCCC--CCCcEEEEcCChhHHHHhhhcCCCcEEEeccc
Q psy1016 187 PGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQ--PDHD--PNTQHCLCGADADLIMLGLATHEPNFTIIREE 255 (718)
Q Consensus 187 p~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~--p~yd--pNt~HcIYGlDADLImL~LatHe~~f~ILRE~ 255 (718)
..++++.|.+||...|. -..+-+.|+..-.. +..+ +..+|+|.+....-=. ....++.|++++
T Consensus 6 ~~f~g~~~~i~g~~~~~--~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~----~~~~~~~iV~~~ 72 (92)
T 4id3_A 6 KIFKNCVIYINGYTKPG--RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKR----IEFANYKVVSPD 72 (92)
T ss_dssp CTTTTCEEEECSCCSSC--HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHH----HHTTTSCEECTH
T ss_pred cccCCEEEEEeCCCCcC--HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHH----HHcCCCCEEccc
Confidence 45789999999966563 45677788875443 3445 7899999987653211 111456666654
No 20
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.82 E-value=30 Score=27.65 Aligned_cols=18 Identities=39% Similarity=0.873 Sum_probs=16.1
Q ss_pred CCCCcccccCCccccccc
Q psy1016 261 ARPCDVCGQMGHEMKECV 278 (718)
Q Consensus 261 ~~~~~~c~q~g~~~~~c~ 278 (718)
...|-.|||.||-+++|.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp SCCCTTTCCTTSCGGGCS
T ss_pred CCccccCCCcCcccccCC
Confidence 357999999999999996
No 21
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=20.51 E-value=36 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=17.9
Q ss_pred CCCCcccccCCcccccccCCC
Q psy1016 261 ARPCDVCGQMGHEMKECVGLD 281 (718)
Q Consensus 261 ~~~~~~c~q~g~~~~~c~~~~ 281 (718)
...|..||+.||-..+|..-.
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCC
T ss_pred CCcceeCCCCCcccccCcCCc
Confidence 357999999999999997644
No 22
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=20.13 E-value=84 Score=27.10 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=43.0
Q ss_pred CCCCccEEEEcCCCCCCchhhHHHHHHHHhhc--CCCCCCCCcEEEEcCChh----HHHHhhhcCCCcEEEeccc
Q psy1016 187 PGWKGIKVILSDANVPGEGEHKIMDYIRKQRA--QPDHDPNTQHCLCGADAD----LIMLGLATHEPNFTIIREE 255 (718)
Q Consensus 187 p~W~~l~VIlSds~VPGEGEHKImdfIR~~r~--~p~ydpNt~HcIYGlDAD----LImL~LatHe~~f~ILRE~ 255 (718)
..++++.|.+||... ..-..|-+.|+..-+ .+.++.+++|+|.|-+++ =+..+.. .++.|++++
T Consensus 14 ~~l~g~~i~isg~~~--~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~---~gi~IV~~~ 83 (107)
T 3l3e_A 14 KPLHKVVVCVSKKLS--KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKE---RGVHIVSEH 83 (107)
T ss_dssp CTTTTCEEEECGGGG--GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHH---TTCEEECHH
T ss_pred CCCCCeEEEEeCCCh--HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHH---CCCeEecHH
Confidence 457899999999853 455666777777543 357788999999986654 2223333 457777764
Done!