Your job contains 1 sequence.
>psy1016
MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH
DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML
GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIF
VRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRL
VNLYKKTVYKTQEQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYY
ESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEV
DTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFY
VSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVK
LERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQ
FAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1016
(718 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0031868 - symbol:Rat1 species:7227 "Drosophila mel... 1638 1.8e-227 3
MGI|MGI:894687 - symbol:Xrn2 "5'-3' exoribonuclease 2" sp... 1535 1.8e-208 3
RGD|1310218 - symbol:Xrn2 "5'-3' exoribonuclease 2" speci... 1535 2.3e-208 3
UNIPROTKB|F1SAU5 - symbol:XRN2 "Uncharacterized protein" ... 1534 2.3e-208 3
UNIPROTKB|E2RMS9 - symbol:XRN2 "Uncharacterized protein" ... 1528 7.7e-208 3
UNIPROTKB|F1MKX7 - symbol:XRN2 "Uncharacterized protein" ... 1526 3.3e-207 3
UNIPROTKB|Q9H0D6 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1521 5.4e-207 3
ZFIN|ZDB-GENE-040426-2874 - symbol:xrn2 "5'-3' exoribonuc... 1520 6.8e-207 3
UNIPROTKB|Q5R4L5 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1518 2.9e-206 3
UNIPROTKB|Q5ZIP4 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1506 2.3e-204 3
WB|WBGene00006964 - symbol:xrn-2 species:6239 "Caenorhabd... 1446 1.7e-197 3
UNIPROTKB|Q9U299 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1446 1.7e-197 3
UNIPROTKB|Q60SG7 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1450 9.3e-197 3
UNIPROTKB|F1PB11 - symbol:XRN2 "Uncharacterized protein" ... 1422 1.2e-196 3
UNIPROTKB|B4DZC3 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1271 1.3e-180 3
TAIR|locus:2005614 - symbol:XRN3 "5'-3' exoribonuclease 3... 1159 6.1e-156 3
TAIR|locus:2020073 - symbol:XRN4 "exoribonuclease 4" spec... 1145 8.8e-153 3
POMBASE|SPAC26A3.12c - symbol:dhp1 "5'-3' exoribonuclease... 1058 7.8e-152 3
SGD|S000005574 - symbol:RAT1 "Nuclear 5' to 3' single-str... 1032 9.1e-143 3
CGD|CAL0003816 - symbol:RAT1 species:5476 "Candida albica... 994 5.0e-140 3
UNIPROTKB|Q5AMG5 - symbol:RAT1 "5'-3' exoribonuclease 2" ... 994 5.0e-140 3
DICTYBASE|DDB_G0269922 - symbol:xrn2 "CCHC-type zinc fing... 996 2.4e-128 3
ZFIN|ZDB-GENE-040426-1203 - symbol:xrn1 "5'-3' exoribonuc... 627 3.6e-108 5
UNIPROTKB|F6XNM6 - symbol:XRN1 "Uncharacterized protein" ... 614 8.7e-102 4
UNIPROTKB|E2R2X2 - symbol:XRN1 "Uncharacterized protein" ... 614 9.9e-102 4
UNIPROTKB|J9PAD8 - symbol:XRN1 "Uncharacterized protein" ... 614 9.9e-102 4
SGD|S000003141 - symbol:XRN1 "Evolutionarily-conserved 5'... 573 3.1e-101 5
UNIPROTKB|E1BMZ8 - symbol:E1BMZ8 "Uncharacterized protein... 615 3.2e-101 4
UNIPROTKB|F1SKG4 - symbol:XRN1 "Uncharacterized protein" ... 612 4.2e-101 4
WB|WBGene00012730 - symbol:xrn-1 species:6239 "Caenorhabd... 722 3.0e-99 4
FB|FBgn0020261 - symbol:pcm "pacman" species:7227 "Drosop... 577 5.5e-98 4
POMBASE|SPAC17A5.14 - symbol:exo2 "exonuclease II Exo2" s... 621 8.4e-96 5
ASPGD|ASPL0000014026 - symbol:AN11052 species:162425 "Eme... 628 9.9e-95 4
UNIPROTKB|E1C8R7 - symbol:XRN1 "Uncharacterized protein" ... 629 1.1e-93 4
UNIPROTKB|Q8IZH2 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 614 1.0e-87 3
RGD|1309713 - symbol:Xrn1 "5'-3' exoribonuclease 1" speci... 615 7.3e-87 3
MGI|MGI:891964 - symbol:Xrn1 "5'-3' exoribonuclease 1" sp... 615 3.1e-86 3
DICTYBASE|DDB_G0276137 - symbol:xrn1 "5'-3' exoribonuclea... 550 1.9e-81 4
GENEDB_PFALCIPARUM|PF11_0074 - symbol:PF11_0074 "exonucle... 261 1.5e-58 5
UNIPROTKB|Q8IIU0 - symbol:PF11_0074 "Exonuclease, putativ... 261 1.5e-58 5
DICTYBASE|DDB_G0289921 - symbol:DDB_G0289921 species:4468... 358 1.6e-57 4
UNIPROTKB|C9JCZ8 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 292 6.6e-25 1
UNIPROTKB|F8WDA0 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 251 1.8e-20 1
DICTYBASE|DDB_G0272997 - symbol:DDB_G0272997 species:4468... 168 3.3e-09 2
>FB|FBgn0031868 [details] [associations]
symbol:Rat1 species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0006355 GO:GO:0046872 GO:GO:0006397
GO:GO:0003676 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 OMA:RKRMKRD EMBL:BT021334
EMBL:BT056259 RefSeq:NP_609082.1 UniGene:Dm.8576
ProteinModelPortal:Q9VM71 SMR:Q9VM71 MINT:MINT-855535 STRING:Q9VM71
PaxDb:Q9VM71 EnsemblMetazoa:FBtr0079345 EnsemblMetazoa:FBtr0332324
GeneID:33964 KEGG:dme:Dmel_CG10354 UCSC:CG10354-RA CTD:33964
FlyBase:FBgn0031868 InParanoid:Q9VM71 OrthoDB:EOG41VHHV
PhylomeDB:Q9VM71 GenomeRNAi:33964 NextBio:786169 Bgee:Q9VM71
GermOnline:CG10354 Uniprot:Q9VM71
Length = 908
Score = 1638 (581.7 bits), Expect = 1.8e-227, Sum P(3) = 1.8e-227
Identities = 308/380 (81%), Positives = 333/380 (87%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPAFFRWLSRKYPSVI+ C E+K + + G+ I D + PNPNG+EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPCTHPEDKPAPK+EDEMMVAIFECIDRLF IVRPRKLLYMAIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
RA+KET EK E+ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM RLS CLHY++
Sbjct: 121 RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV 180
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
HDR NN+P WKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQH LCGADADLIM
Sbjct: 181 HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM 240
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAE-P---NPESVITFGSE 295
LGLATHEPNFTIIREEF PN+ RPCD+C GHEM +CVGL A P N + + G+E
Sbjct: 241 LGLATHEPNFTIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAE 300
Query: 296 VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
V+FIFVRLSVLREYL++ L MPNLPF YSFERALDDWVFMCFFVGNDFLPHLPSLEIREG
Sbjct: 301 VKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 360
Query: 356 AVDRLVNLYKKTVYKTQEQL 375
AVDRLV LYKK VYKT+ L
Sbjct: 361 AVDRLVELYKKCVYKTRGYL 380
Score = 354 (129.7 bits), Expect = 1.8e-227, Sum P(3) = 1.8e-227
Identities = 61/85 (71%), Positives = 67/85 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWEDGFKDRYYESKFDV + FR V +YV GLCWVLKYYYQGC SW WYFP+HY
Sbjct: 488 VRLWEDGFKDRYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHY 547
Query: 468 APFASDFINIAEVDTNFETGTQPVN 492
APFASDF+NI + T FE GT+P N
Sbjct: 548 APFASDFVNIQGLSTMFEKGTKPFN 572
Score = 243 (90.6 bits), Expect = 1.8e-227, Sum P(3) = 1.8e-227
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 646 AAQSTKAPSFIPGGQF-APQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKA 704
AA S+ P P + + +SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDE+RL KA
Sbjct: 583 AASSSHVPE--PWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKA 640
Query: 705 LAPYYEKLSVEE 716
L PYY++L+ EE
Sbjct: 641 LVPYYDQLTGEE 652
Score = 132 (51.5 bits), Expect = 4.8e-204, Sum P(3) = 4.8e-204
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LTDSGDV L+RVQLIM DLG ED+IFK RQ+ E
Sbjct: 378 GYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRRE 413
Score = 48 (22.0 bits), Expect = 3.5e-195, Sum P(3) = 3.5e-195
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 516 INIAEVDTNFETGTQPVN 533
+NI + T FE GT+P N
Sbjct: 555 VNIQGLSTMFEKGTKPFN 572
>MGI|MGI:894687 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10090 "Mus
musculus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0006310 "DNA recombination" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007017 "microtubule-based process" evidence=TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISO] [GO:0016049 "cell growth" evidence=IGI]
[GO:0016070 "RNA metabolic process" evidence=IGI] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Reactome:REACT_93132 InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 MGI:MGI:894687
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0016049
GO:GO:0008270 GO:GO:0006281 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006310 GO:GO:0016070 GO:GO:0007017
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z ChiTaRS:XRN2 EMBL:D38517
EMBL:AK004800 EMBL:AK031247 EMBL:AK053643 EMBL:AK133654
EMBL:AK167019 EMBL:AK168037 EMBL:BC004028 EMBL:BC054743
IPI:IPI00120046 IPI:IPI00283057 PIR:I49635 RefSeq:NP_036047.2
UniGene:Mm.3065 ProteinModelPortal:Q9DBR1 SMR:Q9DBR1 IntAct:Q9DBR1
STRING:Q9DBR1 PhosphoSite:Q9DBR1 PaxDb:Q9DBR1 PRIDE:Q9DBR1
Ensembl:ENSMUST00000028921 GeneID:24128 KEGG:mmu:24128
UCSC:uc008msq.1 InParanoid:Q9DBR1 NextBio:304163 Bgee:Q9DBR1
CleanEx:MM_XRN2 Genevestigator:Q9DBR1 GermOnline:ENSMUSG00000027433
Uniprot:Q9DBR1
Length = 951
Score = 1535 (545.4 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
Identities = 285/375 (76%), Positives = 320/375 (85%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + +E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPFP+ ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 320 (117.7 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
Identities = 55/83 (66%), Positives = 64/83 (77%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ + FE GT+P
Sbjct: 569 APFASDFEGIADMSSEFEKGTKP 591
Score = 200 (75.5 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEEN 674
Score = 105 (42.0 bits), Expect = 1.6e-188, Sum P(4) = 1.6e-188
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 41 (19.5 bits), Expect = 4.9e-179, Sum P(3) = 4.9e-179
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 518 IAEVDTNFETGTQP 531
IA++ + FE GT+P
Sbjct: 578 IADMSSEFEKGTKP 591
Score = 38 (18.4 bits), Expect = 1.6e-188, Sum P(4) = 1.6e-188
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 648 QSTKAPSFIPGGQFAPQDSP 667
Q +PS P FA SP
Sbjct: 467 QRNSSPSISPNTSFASDGSP 486
>RGD|1310218 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10116 "Rattus
norvegicus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0016049 "cell growth"
evidence=IEA;ISO] [GO:0016070 "RNA metabolic process"
evidence=IEA;ISO] [GO:0016235 "aggresome" evidence=IEA;ISO]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 RGD:1310218
GO:GO:0005730 GO:GO:0016049 GO:GO:0008270 GO:GO:0003676
GO:GO:0016070 GO:GO:0000738 EMBL:CH474026 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
OMA:RKRMKRD OrthoDB:EOG4M0F0Z IPI:IPI00357938 UniGene:Rn.64021
Ensembl:ENSRNOT00000016351 Uniprot:D4A914
Length = 951
Score = 1535 (545.4 bits), Expect = 2.3e-208, Sum P(3) = 2.3e-208
Identities = 285/375 (76%), Positives = 320/375 (85%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + +E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPFP+ ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 319 (117.4 bits), Expect = 2.3e-208, Sum P(3) = 2.3e-208
Identities = 55/83 (66%), Positives = 64/83 (77%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ + FE GT+P
Sbjct: 569 APFASDFEGIADMPSEFEKGTKP 591
Score = 200 (75.5 bits), Expect = 2.3e-208, Sum P(3) = 2.3e-208
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEEN 674
Score = 105 (42.0 bits), Expect = 4.9e-189, Sum P(4) = 4.9e-189
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 43 (20.2 bits), Expect = 4.9e-189, Sum P(4) = 4.9e-189
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 648 QSTKAPSFIPGGQFAPQDSP 667
QS +PS P FA SP
Sbjct: 467 QSNSSPSISPNTSFASDGSP 486
Score = 40 (19.1 bits), Expect = 6.3e-179, Sum P(3) = 6.3e-179
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 518 IAEVDTNFETGTQP 531
IA++ + FE GT+P
Sbjct: 578 IADMPSEFEKGTKP 591
>UNIPROTKB|F1SAU5 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:CU633728 EMBL:CU459108 RefSeq:XP_003134355.2 UniGene:Ssc.7627
Ensembl:ENSSSCT00000007781 GeneID:100517201 KEGG:ssc:100517201
Uniprot:F1SAU5
Length = 950
Score = 1534 (545.1 bits), Expect = 2.3e-208, Sum P(3) = 2.3e-208
Identities = 286/375 (76%), Positives = 319/375 (85%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFGS-EV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + S E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPSAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RLSVLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFLRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 320 (117.7 bits), Expect = 2.3e-208, Sum P(3) = 2.3e-208
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 569 APFASDFEGIADMPSDFEKGTKP 591
Score = 200 (75.5 bits), Expect = 2.3e-208, Sum P(3) = 2.3e-208
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 674
Score = 105 (42.0 bits), Expect = 1.1e-185, Sum P(3) = 1.1e-185
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 41 (19.5 bits), Expect = 6.3e-179, Sum P(3) = 6.3e-179
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 578 IADMPSDFEKGTKP 591
>UNIPROTKB|E2RMS9 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
KO:K12619 CTD:22803 OMA:RKRMKRD EMBL:AAEX03013750
RefSeq:XP_534324.2 Ensembl:ENSCAFT00000008370 GeneID:477133
KEGG:cfa:477133 NextBio:20852667 Uniprot:E2RMS9
Length = 950
Score = 1528 (542.9 bits), Expect = 7.7e-208, Sum P(3) = 7.7e-208
Identities = 284/375 (75%), Positives = 319/375 (85%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + +E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 320 (117.7 bits), Expect = 7.7e-208, Sum P(3) = 7.7e-208
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 569 APFASDFEGIADMPSDFEKGTKP 591
Score = 201 (75.8 bits), Expect = 7.7e-208, Sum P(3) = 7.7e-208
Identities = 39/54 (72%), Positives = 43/54 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE++
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETK 675
Score = 105 (42.0 bits), Expect = 3.7e-185, Sum P(3) = 3.7e-185
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 41 (19.5 bits), Expect = 2.1e-178, Sum P(3) = 2.1e-178
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 578 IADMPSDFEKGTKP 591
>UNIPROTKB|F1MKX7 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:DAAA02035814 EMBL:DAAA02035815 IPI:IPI00699133
RefSeq:NP_001179401.1 UniGene:Bt.8587 Ensembl:ENSBTAT00000015019
GeneID:517417 KEGG:bta:517417 NextBio:20872434 Uniprot:F1MKX7
Length = 951
Score = 1526 (542.2 bits), Expect = 3.3e-207, Sum P(3) = 3.3e-207
Identities = 284/375 (75%), Positives = 319/375 (85%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAEIEKQRVREEILAKGGYLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GH++K+C GL E + E + +E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHDVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RLSVLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFIRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 320 (117.7 bits), Expect = 3.3e-207, Sum P(3) = 3.3e-207
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 569 APFASDFEGIADMPSDFEKGTKP 591
Score = 197 (74.4 bits), Expect = 3.3e-207, Sum P(3) = 3.3e-207
Identities = 38/53 (71%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGK++AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKRYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 674
Score = 105 (42.0 bits), Expect = 1.6e-184, Sum P(3) = 1.6e-184
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 41 (19.5 bits), Expect = 9.0e-178, Sum P(3) = 9.0e-178
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 578 IADMPSDFEKGTKP 591
>UNIPROTKB|Q9H0D6 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0016070 "RNA metabolic
process" evidence=ISS] [GO:0016049 "cell growth" evidence=ISS]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=IEP] [GO:0004518 "nuclease
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
Reactome:REACT_17015 InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0016049 GO:GO:0008270 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006401 GO:GO:0006396 GO:GO:0016235
GO:GO:0000738 GO:GO:0006353 EMBL:AL158013 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
EMBL:AF064257 EMBL:AF152169 EMBL:AY382900 EMBL:AL136841
EMBL:AL117332 EMBL:AK000084 EMBL:BC006417 IPI:IPI00100151
IPI:IPI00788157 RefSeq:NP_036387.2 UniGene:Hs.255932
ProteinModelPortal:Q9H0D6 SMR:Q9H0D6 IntAct:Q9H0D6
MINT:MINT-3065664 STRING:Q9H0D6 PhosphoSite:Q9H0D6 DMDM:30173484
SWISS-2DPAGE:Q9H0D6 PaxDb:Q9H0D6 PeptideAtlas:Q9H0D6 PRIDE:Q9H0D6
DNASU:22803 Ensembl:ENST00000377191 Ensembl:ENST00000430571
GeneID:22803 KEGG:hsa:22803 UCSC:uc002wsf.1 GeneCards:GC20P021283
HGNC:HGNC:12836 HPA:HPA047118 MIM:608851 neXtProt:NX_Q9H0D6
PharmGKB:PA37427 InParanoid:Q9H0D6 PhylomeDB:Q9H0D6 ChiTaRS:XRN2
GenomeRNAi:22803 NextBio:43160 PMAP-CutDB:Q9H0D6
ArrayExpress:Q9H0D6 Bgee:Q9H0D6 CleanEx:HS_XRN2
Genevestigator:Q9H0D6 GermOnline:ENSG00000088930 Uniprot:Q9H0D6
Length = 950
Score = 1521 (540.5 bits), Expect = 5.4e-207, Sum P(3) = 5.4e-207
Identities = 283/375 (75%), Positives = 318/375 (84%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + +E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 320 (117.7 bits), Expect = 5.4e-207, Sum P(3) = 5.4e-207
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 569 APFASDFEGIADMPSDFEKGTKP 591
Score = 200 (75.5 bits), Expect = 5.4e-207, Sum P(3) = 5.4e-207
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 674
Score = 105 (42.0 bits), Expect = 2.6e-184, Sum P(3) = 2.6e-184
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 41 (19.5 bits), Expect = 1.5e-177, Sum P(3) = 1.5e-177
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 578 IADMPSDFEKGTKP 591
>ZFIN|ZDB-GENE-040426-2874 [details] [associations]
symbol:xrn2 "5'-3' exoribonuclease 2" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 SMART:SM00343 ZFIN:ZDB-GENE-040426-2874
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z EMBL:BX005124 EMBL:CT573061
IPI:IPI00835014 RefSeq:NP_001001944.2 UniGene:Dr.10637
Ensembl:ENSDART00000100246 GeneID:321940 KEGG:dre:321940
NextBio:20807592 Uniprot:A5WVY7
Length = 952
Score = 1520 (540.1 bits), Expect = 6.8e-207, Sum P(3) = 6.8e-207
Identities = 282/375 (75%), Positives = 318/375 (84%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IVHC+E+K +E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR++LYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E ++RE+++ G LPPE+ K FDSNCITPGT FM L+ CL YY+
Sbjct: 121 ASKEGVELAEEKQKMREEVIERGGYLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYVA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRL NDPGW+ I V LSDA+VPGEGEHKIMDYIR+QR QP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLTNDPGWRNITVFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ RPC +C QMGHE+K+C GL E + E T SE
Sbjct: 240 GLATHEPNFTIIREEFKPNKPRPCALCSQMGHEIKDCQGLPREKQGEHDEFADTIPVSEQ 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPFP+SFER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFIRLAVLREYLERELTMASLPFPFSFERSVDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLV +YK V+KT
Sbjct: 360 IDRLVGIYKDVVHKT 374
Score = 322 (118.4 bits), Expect = 6.8e-207, Sum P(3) = 6.8e-207
Identities = 56/83 (67%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWEDG+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWYFPFHY
Sbjct: 517 VRLWEDGWKQRYYKTKFDVDATDDEFRKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHY 576
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF +I + ++FE GT+P
Sbjct: 577 APFASDFKDIKGMFSDFEKGTKP 599
Score = 198 (74.8 bits), Expect = 6.8e-207, Sum P(3) = 6.8e-207
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+S IIDFYP+DF IDLNGKK+AWQGVALLPFVDE RL ALA Y L+ EE
Sbjct: 630 ESSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVYNDLTPEE 681
Score = 138 (53.6 bits), Expect = 1.8e-187, Sum P(3) = 1.8e-187
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETXXXXXXXXXXXXXXXXXXAAQST 650
G+LT++G V LERV+LIMQ +G+ ED IFKKR++ + ++
Sbjct: 376 GYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMKDKKKRM-------KAE 428
Query: 651 KAPSFIPGGQFAP 663
+ PSF+PGGQFAP
Sbjct: 429 QRPSFLPGGQFAP 441
>UNIPROTKB|Q5R4L5 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9601 "Pongo
abelii" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 EMBL:CR861231 RefSeq:NP_001126942.1
UniGene:Pab.18504 PRIDE:Q5R4L5 GeneID:100173960 KEGG:pon:100173960
InParanoid:Q5R4L5 Uniprot:Q5R4L5
Length = 950
Score = 1518 (539.4 bits), Expect = 2.9e-206, Sum P(3) = 2.9e-206
Identities = 283/375 (75%), Positives = 318/375 (84%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+KP+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + +E
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEG 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 316 (116.3 bits), Expect = 2.9e-206, Sum P(3) = 2.9e-206
Identities = 54/83 (65%), Positives = 64/83 (77%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFD D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 509 VRLWEAGWKQRYYKNKFDADAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 568
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 569 APFASDFEGIADMPSDFEKGTKP 591
Score = 200 (75.5 bits), Expect = 2.9e-206, Sum P(3) = 2.9e-206
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 622 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 674
Score = 105 (42.0 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 376 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 411
Score = 41 (19.5 bits), Expect = 3.0e-177, Sum P(3) = 3.0e-177
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 578 IADMPSDFEKGTKP 591
>UNIPROTKB|Q5ZIP4 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0016049 "cell
growth" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA]
[GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0016049 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0008409 GO:GO:0000738
GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098
KO:K12619 EMBL:AJ720740 IPI:IPI00598321 RefSeq:NP_001026204.1
UniGene:Gga.8002 STRING:Q5ZIP4 PRIDE:Q5ZIP4
Ensembl:ENSGALT00000013637 GeneID:421236 KEGG:gga:421236 CTD:22803
HOVERGEN:HBG036677 InParanoid:Q5ZIP4 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
NextBio:20824031 Uniprot:Q5ZIP4
Length = 949
Score = 1506 (535.2 bits), Expect = 2.3e-204, Sum P(3) = 2.3e-204
Identities = 280/375 (74%), Positives = 318/375 (84%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV+CVE+K +E NG K D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDR+F IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E +IR+++LA G ILPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 121 ASKEGMEAAEEKQKIRQEILAKGGILPPEEVK-ERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLN+DPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 180 DRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITF-GSEV 296
GLATHEP+FTIIREEFKPN+ +PC +C QMGHE+K+C GL E + + + SE
Sbjct: 240 GLATHEPHFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQ 299
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL VLREYLE+EL M +LPF + FER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 300 EFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 360 IDRLVNIYKNVVHKT 374
Score = 314 (115.6 bits), Expect = 2.3e-204, Sum P(3) = 2.3e-204
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
+RLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SW WY+PFHY
Sbjct: 508 IRLWESGWKQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRYYYQGCASWNWYYPFHY 567
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE G++P
Sbjct: 568 APFASDFEGIADMPSDFEKGSKP 590
Score = 196 (74.1 bits), Expect = 2.3e-204, Sum P(3) = 2.3e-204
Identities = 38/53 (71%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
+S IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 621 ESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEEN 673
Score = 126 (49.4 bits), Expect = 1.6e-184, Sum P(3) = 1.6e-184
Identities = 31/74 (41%), Positives = 40/74 (54%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETXXXXXXXXXXXXXXXXXXAAQST 650
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ +
Sbjct: 376 GYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKKKR--------MKR 427
Query: 651 KAPSFIPGGQFAPQ 664
PSFIPGGQF+PQ
Sbjct: 428 DHPSFIPGGQFSPQ 441
Score = 37 (18.1 bits), Expect = 3.9e-175, Sum P(3) = 3.9e-175
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE G++P
Sbjct: 577 IADMPSDFEKGSKP 590
>WB|WBGene00006964 [details] [associations]
symbol:xrn-2 species:6239 "Caenorhabditis elegans"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IMP;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040028 "regulation of vulval
development" evidence=IGI] [GO:0010587 "miRNA catabolic process"
evidence=IGI;IMP;IDA] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IMP] [GO:0040034 "regulation of
development, heterochronic" evidence=IGI] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0006355 GO:GO:0046872 GO:GO:0018996 GO:GO:0008270
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003676
EMBL:AL110490 GO:GO:0040034 GO:GO:0040028 GO:GO:0000738
GO:GO:0060965 GO:GO:0006353 GO:GO:0010587 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1446 (514.1 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 261/380 (68%), Positives = 311/380 (81%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWL++KYP+ +V+ ED+ ++ +G ++P D ++PNPN EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPED+PAPK+EDEM IFE IDR++ IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE AEK A + R +L+A+G +PP+K++ +HFDSNCITPGTPFMARL+ L YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DR+ ND W I++ILSDANVPGEGEHKIMDY+RKQR P HDPNT HCLCGADADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPN--PESVITFGSEVEF 298
G+ATHE NF IIREEF PNQ R CD+CGQ GHE+KEC G + E + + E F
Sbjct: 241 GIATHEANFNIIREEFVPNQPRACDLCGQYGHELKECRGAENETDLGDDYCKPEQREKNF 300
Query: 299 IFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVD 358
IF+R+ VLREYLEKEL+MPNLPF + ERALDDWVF+CFFVGNDFLPHLPSLEIREGA+D
Sbjct: 301 IFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAID 360
Query: 359 RLVNLYKKTVYKTQEQLRQE 378
RL+ LYK+ VY+ + L ++
Sbjct: 361 RLIKLYKEMVYQMKGYLTKD 380
Score = 311 (114.5 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 53/85 (62%), Positives = 62/85 (72%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
+RL+E G+KDRYY +KFDV DDI FR V YV GLCWVL+YYYQGC SW WYFP+HY
Sbjct: 535 IRLYESGWKDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHY 594
Query: 468 APFASDFINIAEVDTNFETGTQPVN 492
APFASDF + E +F T+P N
Sbjct: 595 APFASDFETVGEFQPDFTRPTKPFN 619
Score = 194 (73.4 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 37/54 (68%), Positives = 41/54 (75%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
DSPIID YP DF+IDLNGKK+AWQGVALLPFVDE RL L Y L+ EE +
Sbjct: 648 DSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 701
Score = 115 (45.5 bits), Expect = 8.1e-177, Sum P(3) = 8.1e-177
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 581 KLFSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
KL+ M+ G+LT G +L+RV++IM+ LG +EDEIFK+RQQ E
Sbjct: 364 KLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDE 410
>UNIPROTKB|Q9U299 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6239
"Caenorhabditis elegans" [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0000738
"DNA catabolic process, exonucleolytic" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0006355 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 GO:GO:0006397 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:AL110490 GO:GO:0040034 GO:GO:0040028
GO:GO:0000738 GO:GO:0060965 GO:GO:0006353 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1446 (514.1 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 261/380 (68%), Positives = 311/380 (81%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWL++KYP+ +V+ ED+ ++ +G ++P D ++PNPN EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPED+PAPK+EDEM IFE IDR++ IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE AEK A + R +L+A+G +PP+K++ +HFDSNCITPGTPFMARL+ L YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DR+ ND W I++ILSDANVPGEGEHKIMDY+RKQR P HDPNT HCLCGADADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPN--PESVITFGSEVEF 298
G+ATHE NF IIREEF PNQ R CD+CGQ GHE+KEC G + E + + E F
Sbjct: 241 GIATHEANFNIIREEFVPNQPRACDLCGQYGHELKECRGAENETDLGDDYCKPEQREKNF 300
Query: 299 IFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVD 358
IF+R+ VLREYLEKEL+MPNLPF + ERALDDWVF+CFFVGNDFLPHLPSLEIREGA+D
Sbjct: 301 IFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAID 360
Query: 359 RLVNLYKKTVYKTQEQLRQE 378
RL+ LYK+ VY+ + L ++
Sbjct: 361 RLIKLYKEMVYQMKGYLTKD 380
Score = 311 (114.5 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 53/85 (62%), Positives = 62/85 (72%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
+RL+E G+KDRYY +KFDV DDI FR V YV GLCWVL+YYYQGC SW WYFP+HY
Sbjct: 535 IRLYESGWKDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHY 594
Query: 468 APFASDFINIAEVDTNFETGTQPVN 492
APFASDF + E +F T+P N
Sbjct: 595 APFASDFETVGEFQPDFTRPTKPFN 619
Score = 194 (73.4 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 37/54 (68%), Positives = 41/54 (75%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
DSPIID YP DF+IDLNGKK+AWQGVALLPFVDE RL L Y L+ EE +
Sbjct: 648 DSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 701
Score = 115 (45.5 bits), Expect = 8.1e-177, Sum P(3) = 8.1e-177
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 581 KLFSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
KL+ M+ G+LT G +L+RV++IM+ LG +EDEIFK+RQQ E
Sbjct: 364 KLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDE 410
>UNIPROTKB|Q60SG7 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 EMBL:HE600928 GO:GO:0008409
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 STRING:Q60SG7 PRIDE:Q60SG7
EnsemblMetazoa:CBG20900 WormBase:CBG20900 HOGENOM:HOG000205514
Uniprot:Q60SG7
Length = 976
Score = 1450 (515.5 bits), Expect = 9.3e-197, Sum P(3) = 9.3e-197
Identities = 265/382 (69%), Positives = 312/382 (81%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPAFFRWL++KYP+ +V+ ED+ + V+G+++P D ++PNPN EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPED+PAPK+EDEM IFE IDR+F IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEK--EKGSHFDSNCITPGTPFMARLSACLHYY 178
ASKE AEK A + R +L+A+G +P +K E+ +HFDSNCITPGTPFMARL+ L YY
Sbjct: 121 ASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYY 180
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLI 238
IHDR+ NDP W I++ILSDANVPGEGEHKIMDYIRKQR P HDPNT HCLCGADADLI
Sbjct: 181 IHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLI 240
Query: 239 MLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGL--DAEPNPESVITFGSEV 296
MLG+ATHE NF IIREEF PNQ R C++CGQ GHE+KEC G D + E E
Sbjct: 241 MLGIATHEANFNIIREEFVPNQPRACELCGQYGHELKECRGAENDTDLGDEYCKPEQREK 300
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
FIF+R+ VLREYLEKE+AMPNLPF ++ ERALDDWVF+CFFVGNDFLPHLPSLEIREGA
Sbjct: 301 NFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSLEIREGA 360
Query: 357 VDRLVNLYKKTVYKTQEQLRQE 378
+DRL+ LYK+ VY+ + L ++
Sbjct: 361 IDRLIKLYKEMVYEMKGYLTKD 382
Score = 304 (112.1 bits), Expect = 9.3e-197, Sum P(3) = 9.3e-197
Identities = 51/85 (60%), Positives = 62/85 (72%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
+RL+E G+K+RYY +KFDV DD+ FR V YV GLCWVL+YYYQGC SW WYFP+HY
Sbjct: 536 IRLYESGWKERYYRAKFDVGSDDVDFRHRVAWAYVEGLCWVLRYYYQGCSSWDWYFPYHY 595
Query: 468 APFASDFINIAEVDTNFETGTQPVN 492
APFASDF + E +F T+P N
Sbjct: 596 APFASDFETVGEFKPDFTRPTKPFN 620
Score = 190 (71.9 bits), Expect = 9.3e-197, Sum P(3) = 9.3e-197
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+SPIID YP DF+IDLNGKK+AWQGVALLPFVDE+RL + L Y L+ EE
Sbjct: 649 ESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEE 700
Score = 115 (45.5 bits), Expect = 8.1e-177, Sum P(3) = 8.1e-177
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 581 KLFSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
KL+ M+ G+LT G +L+RV++IM+ LG +EDEIFK+RQQ E
Sbjct: 366 KLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDE 412
>UNIPROTKB|F1PB11 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 EMBL:AAEX03013750
Ensembl:ENSCAFT00000008379 Uniprot:F1PB11
Length = 948
Score = 1422 (505.6 bits), Expect = 1.2e-196, Sum P(3) = 1.2e-196
Identities = 269/375 (71%), Positives = 306/375 (81%)
Query: 3 VPAFFRWLSRKYPSVI--VHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
+P F W + + ++I H VE P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIH
Sbjct: 1 LPGFLTWTAECFENLINNSHIVE--PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 58
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 59 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 118
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
ASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI
Sbjct: 119 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIA 177
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGADADLIML
Sbjct: 178 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 237
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVITFG-SEV 296
GLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E + +E
Sbjct: 238 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 297
Query: 297 EFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGA 356
EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSLEIREGA
Sbjct: 298 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 357
Query: 357 VDRLVNLYKKTVYKT 371
+DRLVN+YK V+KT
Sbjct: 358 IDRLVNIYKNVVHKT 372
Score = 320 (117.7 bits), Expect = 1.2e-196, Sum P(3) = 1.2e-196
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 507 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 566
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 567 APFASDFEGIADMPSDFEKGTKP 589
Score = 201 (75.8 bits), Expect = 1.2e-196, Sum P(3) = 1.2e-196
Identities = 39/54 (72%), Positives = 43/54 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE++
Sbjct: 620 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETK 673
Score = 105 (42.0 bits), Expect = 5.7e-174, Sum P(3) = 5.7e-174
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 374 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 409
Score = 41 (19.5 bits), Expect = 3.2e-167, Sum P(3) = 3.2e-167
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 576 IADMPSDFEKGTKP 589
>UNIPROTKB|B4DZC3 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016235
GO:GO:0016070 EMBL:AL158013 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOVERGEN:HBG036677 EMBL:AL117332 UniGene:Hs.255932
HGNC:HGNC:12836 ChiTaRS:XRN2 EMBL:AK302846 IPI:IPI01012839
SMR:B4DZC3 STRING:B4DZC3 Ensembl:ENST00000539513 Uniprot:B4DZC3
Length = 896
Score = 1271 (452.5 bits), Expect = 1.3e-180, Sum P(3) = 1.3e-180
Identities = 239/321 (74%), Positives = 268/321 (83%)
Query: 55 MNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQ 114
MNGIIHPCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 1 MNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQ 60
Query: 115 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSAC 174
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 61 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 119
Query: 175 LHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGAD 234
L YYI DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCLCGAD
Sbjct: 120 LRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGAD 179
Query: 235 ADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP---NPESVIT 291
ADLIMLGLATHEPNFTIIREEFKPN+ +PC +C Q GHE+K+C GL E + E +
Sbjct: 180 ADLIMLGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADS 239
Query: 292 FG-SEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSL 350
+E EFIF+RL+VLREYLE+EL M +LPF + ER++DDWVFMCFFVGNDFLPHLPSL
Sbjct: 240 LPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSL 299
Query: 351 EIREGAVDRLVNLYKKTVYKT 371
EIRE A+DRLVN+YK V+KT
Sbjct: 300 EIRENAIDRLVNIYKNVVHKT 320
Score = 320 (117.7 bits), Expect = 1.3e-180, Sum P(3) = 1.3e-180
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHY 467
VRLWE G+K RYY++KFDV D FR V YV GLCWVL+YYYQGC SWKWY+PFHY
Sbjct: 455 VRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHY 514
Query: 468 APFASDFINIAEVDTNFETGTQP 490
APFASDF IA++ ++FE GT+P
Sbjct: 515 APFASDFEGIADMPSDFEKGTKP 537
Score = 200 (75.5 bits), Expect = 1.3e-180, Sum P(3) = 1.3e-180
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
DS IIDFYPEDF IDLNGKK+AWQGVALLPFVDE RL AL Y L+ EE+
Sbjct: 568 DSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEET 620
Score = 105 (42.0 bits), Expect = 6.0e-158, Sum P(3) = 6.0e-158
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT+SG V L+RVQ+IM +G +ED IFKKR+ E
Sbjct: 322 GYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDE 357
Score = 41 (19.5 bits), Expect = 3.4e-151, Sum P(3) = 3.4e-151
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 518 IAEVDTNFETGTQP 531
IA++ ++FE GT+P
Sbjct: 524 IADMPSDFEKGTKP 537
>TAIR|locus:2005614 [details] [associations]
symbol:XRN3 "5'-3' exoribonuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IGI;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009888 "tissue development" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0032204 "regulation of telomere maintenance" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0043247 "telomere maintenance in response to DNA
damage" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC006434
GO:GO:0010587 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:AF286719
EMBL:AY136383 EMBL:BT000175 IPI:IPI00542756 IPI:IPI00903453
PIR:D96786 RefSeq:NP_565114.1 UniGene:At.23685
ProteinModelPortal:Q9FQ03 SMR:Q9FQ03 STRING:Q9FQ03 PaxDb:Q9FQ03
PRIDE:Q9FQ03 EnsemblPlants:AT1G75660.1 GeneID:843900
KEGG:ath:AT1G75660 TAIR:At1g75660 InParanoid:Q9FQ03 OMA:ILREVVY
PhylomeDB:Q9FQ03 Genevestigator:Q9FQ03 Uniprot:Q9FQ03
Length = 1020
Score = 1159 (413.0 bits), Expect = 6.1e-156, Sum P(3) = 6.1e-156
Identities = 223/372 (59%), Positives = 275/372 (73%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP ++ +E++P E+ G KIP D+SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+P+P +E+ +F+ IDRLF +VRPRKLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
++K+ ++ AE R+RE+ +G LPP K FDSN ITPGT FM LS L YY+H
Sbjct: 121 SAKDASDAAAEEERLREEFEREGRRLPP-KVDSQVFDSNVITPGTEFMGVLSIALQYYVH 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
RLN+D GWK IKVILSDANVPGEGEHKIM YIR QR P DPNT+HCL G DADLIML
Sbjct: 180 LRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 239
Query: 241 GLATHEPNFTIIREE-FKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
GLATHE +F+I+RE + P Q C +CGQMGH C G + ES G +F+
Sbjct: 240 GLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEK-GDGNDFV 298
Query: 300 -----FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIRE 354
F+ + VLREYLE E+ +PN PF ER +DD++F+CFFVGNDFLPH+P+LEIRE
Sbjct: 299 KKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIRE 358
Query: 355 GAVDRLVNLYKK 366
GA++ L+ +YKK
Sbjct: 359 GAINLLMAVYKK 370
Score = 228 (85.3 bits), Expect = 6.1e-156, Sum P(3) = 6.1e-156
Identities = 42/89 (47%), Positives = 60/89 (67%)
Query: 408 VRLWEDGFKDRYYESKFDV--PKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPF 465
V+L + G+++RYYE KF V P++ R V +Y GLCWV+ YY +G SW+W++P+
Sbjct: 531 VKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPY 590
Query: 466 HYAPFASDFINIAEVDTNFETGT--QPVN 492
HYAPFASD ++ E+D FE GT +P N
Sbjct: 591 HYAPFASDLKDLGEMDIKFELGTPFKPFN 619
Score = 170 (64.9 bits), Expect = 6.1e-156, Sum P(3) = 6.1e-156
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+SPIIDFYP DF++D+NGK+F+WQG+A LPF+DE RL +A++ L+ EE
Sbjct: 645 NSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEE 696
Score = 78 (32.5 bits), Expect = 3.9e-140, Sum P(3) = 3.9e-140
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 588 TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKR 622
++ G+LTD L+RV+ +Q +G ED+IF+KR
Sbjct: 374 SFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKR 408
Score = 38 (18.4 bits), Expect = 6.4e-136, Sum P(3) = 6.4e-136
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 515 LINIAEVDTNFETGT--QPVN 533
L ++ E+D FE GT +P N
Sbjct: 599 LKDLGEMDIKFELGTPFKPFN 619
>TAIR|locus:2020073 [details] [associations]
symbol:XRN4 "exoribonuclease 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA;IGI;IMP] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA;IMP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;IMP]
[GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid"
evidence=IMP] [GO:0009826 "unidimensional cell growth"
evidence=IMP] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=IMP] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=IMP] [GO:0010587 "miRNA catabolic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000003
"reproduction" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006487
"protein N-linked glycosylation" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016049 "cell growth" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009873
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
EMBL:AC005287 GO:GO:0009826 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0040029 GO:GO:0031087 GO:GO:0000291 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 KO:K12619 EMBL:AF286718 EMBL:AY064012
EMBL:AY091411 IPI:IPI00520526 PIR:G96586 RefSeq:NP_175851.1
UniGene:At.16935 ProteinModelPortal:Q9FQ04 SMR:Q9FQ04 STRING:Q9FQ04
PaxDb:Q9FQ04 PRIDE:Q9FQ04 EnsemblPlants:AT1G54490.1 GeneID:841891
KEGG:ath:AT1G54490 TAIR:At1g54490 InParanoid:Q9FQ04 OMA:SWEWYFP
PhylomeDB:Q9FQ04 ProtClustDB:CLSN2682416 Genevestigator:Q9FQ04
Uniprot:Q9FQ04
Length = 947
Score = 1145 (408.1 bits), Expect = 8.8e-153, Sum P(3) = 8.8e-153
Identities = 221/368 (60%), Positives = 272/368 (73%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPAF+RWL+ +YP I VE++P + G IP D ++PNPNG EFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPE KPAP D++ ++FE ID LF +VRPRK+LY+AIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
RA+K+ AE AE R+R+ +G IL KEK DSN ITPGTPFMA LS L YYI
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQILSA-KEKAETCDSNVITPGTPFMAILSVALQYYI 179
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
RLN++PGW+ +KVILSD+NVPGEGEHKIM YIR QR P DPNT+HCL G DADLIM
Sbjct: 180 QSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
Query: 240 LGLATHEPNFTIIREEFK-PNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEF 298
L LATHE +F+I+RE P Q C VCGQ GH +C G N + I + ++
Sbjct: 240 LSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAADIPIHKK-KY 298
Query: 299 IFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVD 358
F+ + VLREYL+ ELA+P+ PF +FER +DD+VF+CFFVGNDFLPH+P+LEIREGA++
Sbjct: 299 QFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAIN 358
Query: 359 RLVNLYKK 366
L+++Y+K
Sbjct: 359 LLMHVYRK 366
Score = 219 (82.2 bits), Expect = 8.8e-153, Sum P(3) = 8.8e-153
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 408 VRLWEDGFKDRYYESKFDV--PKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPF 465
++L E G+K+RYY KF P++ + + +YV GLCWV +YYYQG SW+W++P+
Sbjct: 437 IKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVCRYYYQGVCSWQWFYPY 496
Query: 466 HYAPFASDFINIAEVDTNFETG 487
HYAPFASD N+ +++ F G
Sbjct: 497 HYAPFASDLKNLPDLEITFFIG 518
Score = 163 (62.4 bits), Expect = 8.8e-153, Sum P(3) = 8.8e-153
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
SPI+ FYP DF++D+NGK+FAWQG+A LPF++E+ L A E L+VEE +
Sbjct: 552 SPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQ 604
Score = 89 (36.4 bits), Expect = 4.4e-139, Sum P(3) = 4.4e-139
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKR 622
G+LTDSG+V L+RV+ +Q + + ED+IF+KR
Sbjct: 373 GYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKR 404
>POMBASE|SPAC26A3.12c [details] [associations]
symbol:dhp1 "5'-3' exoribonuclease Dhp1" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004534 "5'-3' exoribonuclease
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IGI;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=ISO] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239
PomBase:SPAC26A3.12c GO:GO:0005634 EMBL:CU329670 GO:GO:0070317
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0003676
GO:GO:0000070 GO:GO:0006995 GO:GO:0006364 PDB:3FQD PDBsum:3FQD
GO:GO:0030846 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:D17752 PIR:S43891
RefSeq:NP_594155.1 DIP:DIP-59743N STRING:P40848
EnsemblFungi:SPAC26A3.12c.1 GeneID:2542674 KEGG:spo:SPAC26A3.12c
OMA:INSEPAL OrthoDB:EOG43NBMS NextBio:20803722 Uniprot:P40848
Length = 991
Score = 1058 (377.5 bits), Expect = 7.8e-152, Sum P(3) = 7.8e-152
Identities = 204/369 (55%), Positives = 266/369 (72%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
MGVPA FR LSRK+ VI +E +++ +G +I D S PNPNG+E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC+HPED+PAP+ EDEMMVA+FE DR+ +VRPR+LL++AIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
R+S+E A K E+ E+ G + K +DSNCITPGTPFM L+ L YYI
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
++LN+DP W+ ++ ILSDA+VPGEGEHKIM++IR QR +P++DPNT H + G DADLIM
Sbjct: 181 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 240
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
LGLATHEP+F ++RE+ Q G +E +G+ + + FI
Sbjct: 241 LGLATHEPHFRVLREDVFFQQ-------GSTKKTKEERLGIKRLDDVSETNKVPVKKPFI 293
Query: 300 FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR 359
++ +S+LREYLE EL +PNLPFP+ ERA+DDWVF FFVGNDFLPHLPSL+IR+GAV+R
Sbjct: 294 WLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVER 353
Query: 360 LVNLYKKTV 368
L +++ ++
Sbjct: 354 LTEIWRASL 362
Score = 268 (99.4 bits), Expect = 7.8e-152, Sum P(3) = 7.8e-152
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 408 VRLWEDGFKDRYYESKFDV-PKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFH 466
VRL+E G+++RYYE KF + P + R V H YV GLCWVL YYYQGC SW WY+P+H
Sbjct: 584 VRLYEPGYRERYYEQKFHISPDEPEKIREAVKH-YVHGLCWVLLYYYQGCPSWTWYYPYH 642
Query: 467 YAPFASDFINIAEVDTNFETGTQP 490
YAPFA+DF ++A +D FE QP
Sbjct: 643 YAPFAADFKDLASIDVKFELN-QP 665
Score = 192 (72.6 bits), Expect = 7.8e-152, Sum P(3) = 7.8e-152
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
++S IIDFYPE+F IDLNGKKF WQGVALLPF+DE RL A++ Y +L+ EES+
Sbjct: 695 ENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESK 749
Score = 82 (33.9 bits), Expect = 3.1e-132, Sum P(3) = 3.1e-132
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
G+LT G V L R ++I+ +G ED+IFK+ +Q E
Sbjct: 367 GYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQE 402
Score = 39 (18.8 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 468 APFASDFINIAEVDTNFETGT--QPVNNNR 495
AP D +N++E +N G + + NNR
Sbjct: 463 APAPVDLVNLSEKTSNRSLGATNRELINNR 492
Score = 38 (18.4 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 18 IVHCVEDKPQEVNGQKIPFDSSKPNPN 44
+VH ++ K V ++ DS++ N N
Sbjct: 554 VVHPIDTKVSNVGQKRKAPDSTEENEN 580
>SGD|S000005574 [details] [associations]
symbol:RAT1 "Nuclear 5' to 3' single-stranded RNA
exonuclease" species:4932 "Saccharomyces cerevisiae" [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IMP]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IGI;IMP] [GO:0006396 "RNA processing"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006353 "DNA-dependent transcription, termination"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SGD:S000005574
GO:GO:0005739 GO:GO:0005634 EMBL:BK006948 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0006364 GO:GO:0030846
GO:GO:0071028 GO:GO:0030847 EMBL:L06011 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098 KO:K12619
OrthoDB:EOG43NBMS EMBL:M95626 EMBL:Z11746 EMBL:S61567 EMBL:Z74956
PIR:S20126 RefSeq:NP_014691.1 ProteinModelPortal:Q02792 SMR:Q02792
DIP:DIP-6692N IntAct:Q02792 MINT:MINT-639904 STRING:Q02792
PaxDb:Q02792 PeptideAtlas:Q02792 EnsemblFungi:YOR048C GeneID:854213
KEGG:sce:YOR048C OMA:NMVRPRK NextBio:976071 Genevestigator:Q02792
GermOnline:YOR048C Uniprot:Q02792
Length = 1006
Score = 1032 (368.3 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 197/373 (52%), Positives = 266/373 (71%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVP+FFRWLSRKYP +I +E++PQ V+G +P D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVH 59
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE+KP P+ EDEM++A+FE +R+ + RPRK+L MA+DGVAPRAKMNQQR+RRFR
Sbjct: 60 PCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFR 119
Query: 121 ASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHY 177
++++ E E+ R RE++ G I+ +DSN ITPGTPFM +L+A L Y
Sbjct: 120 SARDAQIENEAREEIMRQREEV---GEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRY 176
Query: 178 YIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADL 237
+ +L DPGWK ++VI+SDA VPGEGEHKIM++IR QRA P+++PNT HC+ G DADL
Sbjct: 177 WTAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADL 236
Query: 238 IMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVE 297
I LGLATHEP+F I+RE+ R + +K+ + + E + + SE
Sbjct: 237 IFLGLATHEPHFKILREDVFAQDNRK-------RNNLKDTINM-TEEEKQFLQKQNSEQP 288
Query: 298 FIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAV 357
F+++ ++VLREYL EL +P LPF + ERA+DDWVFMCFF GNDFLPHLP L++RE ++
Sbjct: 289 FLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSI 348
Query: 358 DRLVNLYKKTVYK 370
D L++++K + K
Sbjct: 349 DILLDIWKVVLPK 361
Score = 227 (85.0 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 39/82 (47%), Positives = 54/82 (65%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDIA-FRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFH 466
V+L+E G+ +RYY +KF V DI R + Y+ G+ WVL YYYQGC SW W++P+H
Sbjct: 597 VKLFEPGYHERYYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYH 656
Query: 467 YAPFASDFINIAEVDTNFETGT 488
YAP A+DF + ++ FE GT
Sbjct: 657 YAPLATDFHGFSHLEIKFEEGT 678
Score = 173 (66.0 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPE+F ID+NGKK +WQG+ALLPF+D++RL A+ Y LS E
Sbjct: 710 DSEIIDFYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAE 761
Score = 60 (26.2 bits), Expect = 3.5e-125, Sum P(3) = 3.5e-125
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
++T G + L V+ ++Q LG E +IFK R E
Sbjct: 365 YMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQE 399
Score = 41 (19.5 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 88 LFRIVRPRKLLYMAIDGV 105
++++V P+ YM DGV
Sbjct: 354 IWKVVLPKLKTYMTCDGV 371
>CGD|CAL0003816 [details] [associations]
symbol:RAT1 species:5476 "Candida albicans" [GO:0004534
"5'-3' exoribonuclease activity" evidence=IGI] [GO:0008017
"microtubule binding" evidence=IGI] [GO:0000150 "recombinase
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0030846 "termination
of RNA polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IEA]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 CGD:CAL0003816 GO:GO:0005634 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0008017 EMBL:AACQ01000005
EMBL:AACQ01000006 GO:GO:0006364 GO:GO:0006353 GO:GO:0000150
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
KO:K12619 RefSeq:XP_722750.1 RefSeq:XP_722895.1 STRING:Q5AMG5
GeneID:3635468 GeneID:3635686 KEGG:cal:CaO19.12150
KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 994 (355.0 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
Identities = 190/369 (51%), Positives = 257/369 (69%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPA FRWLSRKYP +I VE++ E+ G K PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKY----ENPNPNG-EIDNLYLDMNGIVH 55
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE K P+ EDEM + IF+ DR+ + RPRK+L +A+DGVAPRAKMNQQR+RRFR
Sbjct: 56 PCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFR 115
Query: 121 ASKETAEKIAEVA-RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
A+K+ K ++ ++E+ L I K K +DSN ITPGTPFM RL+ L Y++
Sbjct: 116 AAKDAELKAKQLEIEVQERELRGEIINDAIKGK-KQWDSNAITPGTPFMDRLAEALRYWV 174
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
+L++DPGW ++VI+SDA VPGEGEHK+M +IR QR+ P +DPNT+HC+ G DADLI
Sbjct: 175 AYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIF 234
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
LGLATHEP+F ++RE+ +Q + + Q+ DA N ++V + F+
Sbjct: 235 LGLATHEPHFRVLREDVFASQDKKFTIKDQIA---------DANSNGDTVAKEDKK-PFL 284
Query: 300 FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR 359
++ ++VLREYL+ EL P + FP+ ERA+DDWVF+CFF GNDFLPHLPSL++R+ +D
Sbjct: 285 WLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRDNGIDT 344
Query: 360 LVNLYKKTV 368
LV +K+++
Sbjct: 345 LVQCWKRSL 353
Score = 234 (87.4 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDI---AFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFP 464
++LWE G+ RYYE+KF D+ R +V H YV G+ WV YYYQGC SW WYFP
Sbjct: 539 IKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRH-YVEGIAWVALYYYQGCPSWNWYFP 597
Query: 465 FHYAPFASDFINIAEV 480
+HYAPFA+DF N+ E+
Sbjct: 598 YHYAPFAADFTNLEEL 613
Score = 178 (67.7 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPE+F+ID+NGKK +WQG+ LLPF+DE+RL A+ YE L+ +E
Sbjct: 656 DSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDE 707
Score = 64 (27.6 bits), Expect = 4.0e-122, Sum P(3) = 4.0e-122
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
++T G + L+ V+++M +L E EIFK + E
Sbjct: 359 YVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAE 393
>UNIPROTKB|Q5AMG5 [details] [associations]
symbol:RAT1 "5'-3' exoribonuclease 2" species:237561
"Candida albicans SC5314" [GO:0000150 "recombinase activity"
evidence=IGI] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0008017 "microtubule binding" evidence=IGI] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 CGD:CAL0003816
GO:GO:0005634 GO:GO:0006355 GO:GO:0006397 GO:GO:0003676
GO:GO:0008017 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006364
GO:GO:0006353 GO:GO:0000150 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_722750.1
RefSeq:XP_722895.1 STRING:Q5AMG5 GeneID:3635468 GeneID:3635686
KEGG:cal:CaO19.12150 KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 994 (355.0 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
Identities = 190/369 (51%), Positives = 257/369 (69%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MGVPA FRWLSRKYP +I VE++ E+ G K PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKY----ENPNPNG-EIDNLYLDMNGIVH 55
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC+HPE K P+ EDEM + IF+ DR+ + RPRK+L +A+DGVAPRAKMNQQR+RRFR
Sbjct: 56 PCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFR 115
Query: 121 ASKETAEKIAEVA-RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
A+K+ K ++ ++E+ L I K K +DSN ITPGTPFM RL+ L Y++
Sbjct: 116 AAKDAELKAKQLEIEVQERELRGEIINDAIKGK-KQWDSNAITPGTPFMDRLAEALRYWV 174
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
+L++DPGW ++VI+SDA VPGEGEHK+M +IR QR+ P +DPNT+HC+ G DADLI
Sbjct: 175 AYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIF 234
Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
LGLATHEP+F ++RE+ +Q + + Q+ DA N ++V + F+
Sbjct: 235 LGLATHEPHFRVLREDVFASQDKKFTIKDQIA---------DANSNGDTVAKEDKK-PFL 284
Query: 300 FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR 359
++ ++VLREYL+ EL P + FP+ ERA+DDWVF+CFF GNDFLPHLPSL++R+ +D
Sbjct: 285 WLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRDNGIDT 344
Query: 360 LVNLYKKTV 368
LV +K+++
Sbjct: 345 LVQCWKRSL 353
Score = 234 (87.4 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 408 VRLWEDGFKDRYYESKFDVPKDDI---AFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFP 464
++LWE G+ RYYE+KF D+ R +V H YV G+ WV YYYQGC SW WYFP
Sbjct: 539 IKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRH-YVEGIAWVALYYYQGCPSWNWYFP 597
Query: 465 FHYAPFASDFINIAEV 480
+HYAPFA+DF N+ E+
Sbjct: 598 YHYAPFAADFTNLEEL 613
Score = 178 (67.7 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DS IIDFYPE+F+ID+NGKK +WQG+ LLPF+DE+RL A+ YE L+ +E
Sbjct: 656 DSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDE 707
Score = 64 (27.6 bits), Expect = 4.0e-122, Sum P(3) = 4.0e-122
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 592 FLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
++T G + L+ V+++M +L E EIFK + E
Sbjct: 359 YVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAE 393
>DICTYBASE|DDB_G0269922 [details] [associations]
symbol:xrn2 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 dictyBase:DDB_G0269922 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_646407.1
STRING:Q55CS4 EnsemblProtists:DDB0237528 GeneID:8617364
KEGG:ddi:DDB_G0269922 InParanoid:Q55CS4 Uniprot:Q55CS4
Length = 1190
Score = 996 (355.7 bits), Expect = 2.4e-128, Sum P(3) = 2.4e-128
Identities = 199/374 (53%), Positives = 261/374 (69%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MG+PAFFRWL KY +I E P+E +G + D + PNPNG E+DNLYLDMNGIIH
Sbjct: 1 MGIPAFFRWLIDKYGGLIQETTE--PREADGGRSVVDFTTPNPNG-EYDNLYLDMNGIIH 57
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPE P PK ++M+ +I+E +D LF I+RPRKL+YMA+DGVAPRAKMNQQR+RRFR
Sbjct: 58 PCAHPEKGPKPKSIEDMIQSIYEYLDLLFAIIRPRKLIYMAVDGVAPRAKMNQQRTRRFR 117
Query: 121 ASKETA-EKIAEVARIREKLLADGCILPPE-----KEKGSHF--DSNCITPGTPFMARLS 172
A+ ++ +K E A RE++ DG E +EK + F DSNCITPGT FM R++
Sbjct: 118 AALDSRLDKDKEAALWRERIY-DGLATQQEYEQYMEEKKNKFKFDSNCITPGTLFMDRVA 176
Query: 173 ACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCG 232
L Y+ ++L DP WK +K+I+SDA+VPGEGEHKIMDY+R QRAQPD+DPN +H + G
Sbjct: 177 ESLRTYVAEKLTTDPAWKDVKIIISDASVPGEGEHKIMDYVRHQRAQPDYDPNLKHIIYG 236
Query: 233 ADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITF 292
DADLIMLGLATHE NF I+RE +P C C + GH EC E +SV F
Sbjct: 237 LDADLIMLGLATHEVNFDILREFIQPIARGVCHKCHKKGHLAIEC----KEEVDDSVKDF 292
Query: 293 GSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
+ + + L +L+EYLE E + + PF + +R +DD++F+CFFVGNDFLPHLP+LEI
Sbjct: 293 LVK-NYQILHLHLLKEYLELETKV-STPFGFDIDRIVDDFIFLCFFVGNDFLPHLPNLEI 350
Query: 353 REGAVDRLVNLYKK 366
++GA+DR++ YK+
Sbjct: 351 KDGAIDRVIKCYKE 364
Score = 196 (74.1 bits), Expect = 2.4e-128, Sum P(3) = 2.4e-128
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 408 VRLWEDGFKDRYYESKFDVP-KDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFH 466
++ E+G++DRYY+S F V +DDI + YV GL WVLKYY++GC SW WY+P+H
Sbjct: 607 IKYSEEGWRDRYYQSCFQVENEDDIK---QICKSYVEGLVWVLKYYFKGCSSWGWYYPYH 663
Query: 467 YAPFASD 473
Y+P+ +D
Sbjct: 664 YSPYITD 670
Score = 103 (41.3 bits), Expect = 2.4e-128, Sum P(3) = 2.4e-128
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
++SPII+FYP F+ID + ++GV LLPF++ +L K ++ L+ EE
Sbjct: 725 EESPIIEFYPRAFRIDRGPTEPLYKGVCLLPFINSIKLLKTISKTEPLLTEEE 777
Score = 51 (23.0 bits), Expect = 4.5e-113, Sum P(3) = 4.5e-113
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 581 KLFSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
K + +L ++ +L +G+V R+ I L E+E F+++ Q +
Sbjct: 360 KCYKELLPSFDDYLVSNGEVNFPRLSQIFVALTKGEEESFQRKIQKD 406
>ZFIN|ZDB-GENE-040426-1203 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease 1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743
ZFIN:ZDB-GENE-040426-1203 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
CTD:54464 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:CU929319 IPI:IPI00498230
RefSeq:NP_957327.2 UniGene:Dr.69803 Ensembl:ENSDART00000125413
GeneID:394008 KEGG:dre:394008 NextBio:20814974 ArrayExpress:F1Q4U5
Bgee:F1Q4U5 Uniprot:F1Q4U5
Length = 1697
Score = 627 (225.8 bits), Expect = 3.6e-108, Sum P(5) = 3.6e-108
Identities = 119/213 (55%), Positives = 155/213 (72%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D+ E+++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE EKI +K L G +LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEEKI-------KKALEKGEVLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y++H++L+ D W+G+ V LS PGEGEHKIM++IR + +P H+P
Sbjct: 137 TDFMARLQEQLKYFVHNKLSTDKTWQGVNVYLSGHETPGEGEHKIMEFIRSESTKPGHNP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFK 257
NT+HCL G DADLIMLGL +HEP+F+++REE +
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHEPHFSLLREEVR 229
Score = 168 (64.2 bits), Expect = 3.6e-108, Sum P(5) = 3.6e-108
Identities = 34/77 (44%), Positives = 44/77 (57%)
Query: 290 ITFGSEVEFIFVRLSVLREYLEKELA--MPNLPFPYSFERALDDWVFMCFFVGNDFLPHL 347
IT E F + LS++REY++ E + + F Y ER +DDWV M F VGNDF+PHL
Sbjct: 239 ITAPEETTFHLLHLSLMREYIDYEFSELRKKISFEYDLERIIDDWVLMGFLVGNDFIPHL 298
Query: 348 PSLEIREGAVDRLVNLY 364
P L I A+ L Y
Sbjct: 299 PHLHINHDALPLLYRTY 315
Score = 167 (63.8 bits), Expect = 3.6e-108, Sum P(5) = 3.6e-108
Identities = 30/71 (42%), Positives = 40/71 (56%)
Query: 415 FKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDF 474
+K YY +K V F YV G+ W+L YYY G +SW WY+P+HYAPF SD
Sbjct: 435 YKRTYYMTKMGVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFLSDV 494
Query: 475 INIAEVDTNFE 485
NI+ + F+
Sbjct: 495 RNISGLSLTFD 505
Score = 152 (58.6 bits), Expect = 3.6e-108, Sum P(5) = 3.6e-108
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
SPI+++YP+DFK DLNGK+ W+ V L+PF+DE+ L A+ PY L+ E
Sbjct: 541 SPIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHNLTPSE 591
Score = 73 (30.8 bits), Expect = 3.6e-108, Sum P(5) = 3.6e-108
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDSSKPNPNGM 46
MGVP F+RW+S +YP C+ + +E +IP FD+ + NG+
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKE---HQIPEFDNLYLDMNGI 39
Score = 48 (22.0 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 309 YLEKELAMPNLPFPY 323
+LEK+ A LPFPY
Sbjct: 814 HLEKQFAKQVLPFPY 828
>UNIPROTKB|F6XNM6 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:AAEX03013647 Ensembl:ENSCAFT00000012512 Uniprot:F6XNM6
Length = 1702
Score = 614 (221.2 bits), Expect = 8.7e-102, Sum P(4) = 8.7e-102
Identities = 118/223 (52%), Positives = 156/223 (69%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K L G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKALEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVC 267
NT+HCL G DADLIMLGL +HE +F+++REE + + VC
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQRVC 239
Score = 175 (66.7 bits), Expect = 8.7e-102, Sum P(4) = 8.7e-102
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV DD F YV + W+L YYY G +SW WY+P+HYAPF S
Sbjct: 430 YKRTYYMTKMGVDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 487
Query: 473 DFINIAEVDTNFETG 487
D NI+ + +FE G
Sbjct: 488 DIRNISTLKIHFELG 502
Score = 162 (62.1 bits), Expect = 8.7e-102, Sum P(4) = 8.7e-102
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELA--MPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 155 (59.6 bits), Expect = 8.7e-102, Sum P(4) = 8.7e-102
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 534 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEE 586
Score = 74 (31.1 bits), Expect = 2.2e-34, Sum P(4) = 2.2e-34
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 39 (18.8 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 248 NFTIIREEFKPNQARPCDVC 267
N ++ +EE K NQ C +C
Sbjct: 579 NHSLKKEERKRNQHSECLMC 598
Score = 38 (18.4 bits), Expect = 1.9e-87, Sum P(4) = 1.9e-87
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
>UNIPROTKB|E2R2X2 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 Ensembl:ENSCAFT00000012512
Uniprot:E2R2X2
Length = 1729
Score = 614 (221.2 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 118/223 (52%), Positives = 156/223 (69%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K L G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKALEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVC 267
NT+HCL G DADLIMLGL +HE +F+++REE + + VC
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQRVC 239
Score = 175 (66.7 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV DD F YV + W+L YYY G +SW WY+P+HYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 473 DFINIAEVDTNFETG 487
D NI+ + +FE G
Sbjct: 491 DIRNISTLKIHFELG 505
Score = 162 (62.1 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELA--MPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 155 (59.6 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 43 (20.2 bits), Expect = 3.7e-61, Sum P(3) = 3.7e-61
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 293 GSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVF 334
GSE + +L EYLE P L F Y + + +D VF
Sbjct: 974 GSEWMYSSAAEQLLAEYLESLARAPEL-FSYIAKNSQED-VF 1013
Score = 39 (18.8 bits), Expect = 3.7e-61, Sum P(3) = 3.7e-61
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 248 NFTIIREEFKPNQARPCDVC 267
N ++ +EE K NQ C +C
Sbjct: 582 NHSLKKEERKRNQHSECLMC 601
Score = 38 (18.4 bits), Expect = 2.1e-87, Sum P(4) = 2.1e-87
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
>UNIPROTKB|J9PAD8 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AAEX03013647
Ensembl:ENSCAFT00000047807 Uniprot:J9PAD8
Length = 1730
Score = 614 (221.2 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 118/223 (52%), Positives = 156/223 (69%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K L G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKALEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVC 267
NT+HCL G DADLIMLGL +HE +F+++REE + + VC
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQRVC 239
Score = 175 (66.7 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV DD F YV + W+L YYY G +SW WY+P+HYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 473 DFINIAEVDTNFETG 487
D NI+ + +FE G
Sbjct: 491 DIRNISTLKIHFELG 505
Score = 162 (62.1 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELA--MPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 155 (59.6 bits), Expect = 9.9e-102, Sum P(4) = 9.9e-102
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 39 (18.8 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 248 NFTIIREEFKPNQARPCDVC 267
N ++ +EE K NQ C +C
Sbjct: 582 NHSLKKEERKRNQHSECLMC 601
Score = 38 (18.4 bits), Expect = 2.2e-87, Sum P(4) = 2.2e-87
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
>SGD|S000003141 [details] [associations]
symbol:XRN1 "Evolutionarily-conserved 5'-3' exonuclease
component of cytoplasmic p" species:4932 "Saccharomyces cerevisiae"
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA;TAS]
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0004536
"deoxyribonuclease activity" evidence=TAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000741 "karyogamy" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 SGD:S000003141 GO:GO:0005829 GO:GO:0048471
GO:GO:0000184 EMBL:BK006941 GO:GO:0003723 GO:GO:0000932
GO:GO:0000956 GO:GO:0005874 GO:GO:0004536 GO:GO:0006364
GO:GO:0007089 GO:GO:0000741 EMBL:X84705 GO:GO:0070651
Reactome:REACT_83470 eggNOG:COG5049 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000160331
OrthoDB:EOG4PP1R0 EMBL:M90097 EMBL:X54717 EMBL:M58367 EMBL:M36725
EMBL:X61181 EMBL:Z72695 PIR:S13743 RefSeq:NP_011342.1
ProteinModelPortal:P22147 SMR:P22147 DIP:DIP-656N IntAct:P22147
MINT:MINT-414332 STRING:P22147 PaxDb:P22147 PeptideAtlas:P22147
EnsemblFungi:YGL173C GeneID:852702 KEGG:sce:YGL173C CYGD:YGL173c
GeneTree:ENSGT00670000098080 OMA:NIFAYIE Reactome:REACT_78815
NextBio:972050 Genevestigator:P22147 GermOnline:YGL173C
Uniprot:P22147
Length = 1528
Score = 573 (206.8 bits), Expect = 3.1e-101, Sum P(5) = 3.1e-101
Identities = 113/211 (53%), Positives = 149/211 (70%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMN I+H CTH D K E+E+ I ID LF+ ++P+K+ YMAIDG
Sbjct: 28 EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR+RRFR + + AEK + K + +G +P KG FDSN ITPG
Sbjct: 88 VAPRAKMNQQRARRFRTAMD-AEKALK------KAIENGDEIP----KGEPFDSNSITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMA+L+ L Y+IHD+++ND W+ +++I S VPGEGEHKIM++IR ++Q D +
Sbjct: 137 TEFMAKLTKNLQYFIHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQ 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREE 255
NT+HC+ G DADLIMLGL+TH P+F ++REE
Sbjct: 197 NTRHCIYGLDADLIMLGLSTHGPHFALLREE 227
Score = 170 (64.9 bits), Expect = 3.1e-101, Sum P(5) = 3.1e-101
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 298 FIFVRLSVLREYLE---KELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIRE 354
F + LS+LREY+E KE+A + F Y+FER LDD++ + F +GNDFLP+LP L + +
Sbjct: 245 FYLLHLSLLREYMELEFKEIA-DEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNK 303
Query: 355 GAVDRLVNLYKKTVYKTQEQLRQ 377
GA L+ +K+ + T + +
Sbjct: 304 GAFPVLLQTFKEALLHTDGYINE 326
Score = 161 (61.7 bits), Expect = 3.1e-101, Sum P(5) = 3.1e-101
Identities = 30/71 (42%), Positives = 37/71 (52%)
Query: 415 FKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDF 474
+K YY K D + +YV GL WVL YYY+GC SW WY+P HYAP SD
Sbjct: 511 WKHEYYHDKLKFTTDSEEKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRISDL 570
Query: 475 INIAEVDTNFE 485
+ D F+
Sbjct: 571 AKGLDQDIEFD 581
Score = 151 (58.2 bits), Expect = 3.1e-101, Sum P(5) = 3.1e-101
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 653 PSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKL 712
P+F P + SPI DFYP + ++D NGK W+ V L+ FVDE+RL +A+ PY KL
Sbjct: 606 PAFRP--LMYDEQSPIHDFYPAEVQLDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKL 663
Query: 713 SVEE 716
S EE
Sbjct: 664 SPEE 667
Score = 63 (27.2 bits), Expect = 3.1e-101, Sum P(5) = 3.1e-101
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDS 38
MG+P FFR++S ++P ++ Q + G +IP FD+
Sbjct: 1 MGIPKFFRYISERWPMIL--------QLIEGTQIPEFDN 31
Score = 38 (18.4 bits), Expect = 2.0e-88, Sum P(5) = 2.0e-88
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 586 MLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
+L G++ + G + L+R+ + + L E F+K
Sbjct: 317 LLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEK 352
>UNIPROTKB|E1BMZ8 [details] [associations]
symbol:E1BMZ8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:DAAA02002875 EMBL:DAAA02002876 EMBL:DAAA02002877
IPI:IPI00689341 Ensembl:ENSBTAT00000015318 Uniprot:E1BMZ8
Length = 1723
Score = 615 (221.5 bits), Expect = 3.2e-101, Sum P(4) = 3.2e-101
Identities = 118/223 (52%), Positives = 156/223 (69%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE EKI +K + G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEEKI-------KKAIEKGETLPAE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVC 267
NT+HCL G DADLIMLGL +HE +F+++REE + + VC
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
Score = 171 (65.3 bits), Expect = 3.2e-101, Sum P(4) = 3.2e-101
Identities = 33/75 (44%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV DD F YV + W+L YYY G +SW W++P+HYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAPFLS 490
Query: 473 DFINIAEVDTNFETG 487
D NI+ + +FE G
Sbjct: 491 DIRNISTLKIHFELG 505
Score = 162 (62.1 bits), Expect = 3.2e-101, Sum P(4) = 3.2e-101
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 153 (58.9 bits), Expect = 3.2e-101, Sum P(4) = 3.2e-101
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 538 DSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 1.0e-33, Sum P(4) = 1.0e-33
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 39 (18.8 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 248 NFTIIREEFKPNQARPCDVC 267
N ++ +EE K NQ C +C
Sbjct: 582 NHSLKKEERKRNQHSECLMC 601
Score = 38 (18.4 bits), Expect = 2.6e-87, Sum P(4) = 2.6e-87
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
>UNIPROTKB|F1SKG4 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:CU914452 EMBL:CU467674 Ensembl:ENSSSCT00000012784
ArrayExpress:F1SKG4 Uniprot:F1SKG4
Length = 1725
Score = 612 (220.5 bits), Expect = 4.2e-101, Sum P(4) = 4.2e-101
Identities = 117/223 (52%), Positives = 156/223 (69%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K + G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVC 267
NT+HCL G DADLIMLGL +HE +F+++REE + + VC
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
Score = 171 (65.3 bits), Expect = 4.2e-101, Sum P(4) = 4.2e-101
Identities = 33/75 (44%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV DD F YV + W+L YYY G +SW W++P+HYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAPFLS 490
Query: 473 DFINIAEVDTNFETG 487
D NI+ + +FE G
Sbjct: 491 DIRNISTLKIHFELG 505
Score = 162 (62.1 bits), Expect = 4.2e-101, Sum P(4) = 4.2e-101
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 155 (59.6 bits), Expect = 4.2e-101, Sum P(4) = 4.2e-101
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 6.5e-34, Sum P(4) = 6.5e-34
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 39 (18.8 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 248 NFTIIREEFKPNQARPCDVC 267
N ++ +EE K NQ C +C
Sbjct: 582 NHSLKKEERKRNQHSECLMC 601
Score = 38 (18.4 bits), Expect = 3.5e-87, Sum P(4) = 3.5e-87
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
>WB|WBGene00012730 [details] [associations]
symbol:xrn-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0016246 GO:GO:0003676
GO:GO:0005622 GO:GO:0008409 EMBL:AL032634 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
OMA:NIFAYIE RefSeq:NP_496945.3 UniGene:Cel.6888
ProteinModelPortal:Q9BHK7 SMR:Q9BHK7 STRING:Q9BHK7 PaxDb:Q9BHK7
EnsemblMetazoa:Y39G8C.1 GeneID:175059 KEGG:cel:CELE_Y39G8C.1
UCSC:Y39G8C.1 CTD:175059 WormBase:Y39G8C.1 HOGENOM:HOG000021950
InParanoid:Q9BHK7 NextBio:886590 Uniprot:Q9BHK7
Length = 1591
Score = 722 (259.2 bits), Expect = 3.0e-99, Sum P(4) = 3.0e-99
Identities = 158/327 (48%), Positives = 209/327 (63%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D EDE+ V IF I+ L+ ++RP+K+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHNCSHPNDDDVTFRITEDEIFVNIFAYIENLYNLIRPQKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR+RRF +++ ++A K L +G I+P E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRARRFMSARTAHTQLA-------KALENGEIMPSE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FM RL L +I + D W+G K+ILS NVPGEGEHKIMD+IR +RA +DP
Sbjct: 137 TYFMTRLHQKLDDWIKTKSATDSRWQGRKIILSGHNVPGEGEHKIMDFIRTERAGSSYDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEP 284
NT+HC+ G DADLIMLG+ +HEP+F+++REE N RP ++ K A
Sbjct: 197 NTRHCMYGLDADLIMLGIVSHEPHFSLLREEVTFN-TRP------RKNDNK------ATK 243
Query: 285 NPESVITFGSEVE-FIFVRLSVLREYLEKELA--MPNLPFPYSFERALDDWVFMCFFVGN 341
P+ S+V+ F + LS+LREYL E A +LPF Y ER +DDW+ + VGN
Sbjct: 244 KPKRT---DSDVKKFHLLHLSLLREYLAWEFADVKDSLPFEYEMERIVDDWILLGLLVGN 300
Query: 342 DFLPHLPSLEIREGAVDRLVNLYKKTV 368
DFLPHLP++ I + A+ L + YKK +
Sbjct: 301 DFLPHLPNIHIHDDALPLLYSTYKKVL 327
Score = 146 (56.5 bits), Expect = 3.0e-99, Sum P(4) = 3.0e-99
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 663 PQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
P SPI DFYP +F+ DLNGK+ W+ V L+PF++E+RL +A+ +L+ EE+
Sbjct: 600 PAKSPICDFYPANFETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEEN 654
Score = 135 (52.6 bits), Expect = 3.0e-99, Sum P(4) = 3.0e-99
Identities = 29/71 (40%), Positives = 35/71 (49%)
Query: 416 KDRYYESKFDVPKDDIAFRLMVGHE-YVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDF 474
K YY K K+ +L E YV + W L YYY GC SW W++P HYAPF SD
Sbjct: 496 KKTYYSDKLRY-KNISKQQLREQAEGYVRAIQWNLHYYYHGCVSWSWFYPHHYAPFISDV 554
Query: 475 INIAEVDTNFE 485
+ FE
Sbjct: 555 RGFVGMRMEFE 565
Score = 73 (30.8 bits), Expect = 3.0e-99, Sum P(4) = 3.0e-99
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDSSKPNPNGM 46
MGVP F+RW S +YP C+ + +N +IP FD+ + NG+
Sbjct: 1 MGVPKFYRWTSERYP-----CLSEV---INESQIPEFDNLYLDMNGI 39
Score = 51 (23.0 bits), Expect = 1.9e-90, Sum P(4) = 1.9e-90
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 583 FSRML-TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTE 626
+ ++L T G++ ++G + L R + + +L + + F +R + E
Sbjct: 323 YKKVLPTLDGYINEAGYLNLSRFEAFLAELALNDKTSFMERLEDE 367
>FB|FBgn0020261 [details] [associations]
symbol:pcm "pacman" species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0007369
"gastrulation" evidence=NAS] [GO:0006401 "RNA catabolic process"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0034428 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 5'-3'" evidence=IMP] [GO:0042060
"wound healing" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0046529 "imaginal disc
fusion, thorax closure" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0010603 "regulation of cytoplasmic mRNA processing body
assembly" evidence=IMP] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0016246 GO:GO:0000184
GO:GO:0007391 EMBL:AE014298 GO:GO:0007283 GO:GO:0003676
GO:GO:0042060 GO:GO:0000932 GO:GO:0007476 GO:GO:0008409
GO:GO:0046529 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 RefSeq:NP_001162796.1 UniGene:Dm.7395
PDB:2LYD PDB:2Y35 PDBsum:2LYD PDBsum:2Y35
EnsemblMetazoa:FBtr0302082 GeneID:32935 KEGG:dme:Dmel_CG3291
CTD:32935 FlyBase:FBgn0020261 OMA:FVPIQAY PhylomeDB:E1JJR3
GenomeRNAi:32935 NextBio:781106 Bgee:E1JJR3 GO:GO:0034428
GO:GO:0010603 Uniprot:E1JJR3
Length = 1613
Score = 577 (208.2 bits), Expect = 5.5e-98, Sum P(4) = 5.5e-98
Identities = 112/213 (52%), Positives = 151/213 (70%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGI+H C+HP+D +E+++ IF +D+LF +++P++L ++++DG
Sbjct: 28 EFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQRSRRFR ++E ++ A+ A+ R +L E E+ FDSNCITPG
Sbjct: 88 VAPRAKMNQQRSRRFRTAREAEQQEAKAAQ-RGELR--------EHER---FDSNCITPG 135
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FM RL L ++ +++ DP W+ VILS PGEGEHKIMDYIR + QPD+DP
Sbjct: 136 TEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDP 195
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFK 257
NT+HCL G DADLI+LGL THE +F ++REE K
Sbjct: 196 NTRHCLYGLDADLIILGLCTHELHFVVLREEVK 228
Score = 195 (73.7 bits), Expect = 5.5e-98, Sum P(4) = 5.5e-98
Identities = 36/75 (48%), Positives = 46/75 (61%)
Query: 415 FKDRYYESKFDV-PKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASD 473
+K +Y +KF P D++ L H YV L WVL YYY+G +SW WY+PFHY PF SD
Sbjct: 414 YKRNFYRNKFKRDPNDELIEELC--HHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISD 471
Query: 474 FINIAEVDTNFETGT 488
NI +V+ F GT
Sbjct: 472 LKNIEQVEIAFHMGT 486
Score = 151 (58.2 bits), Expect = 5.5e-98, Sum P(4) = 5.5e-98
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE 718
SP+ +FYP +F+ DLNGKK W+ V L+PF+DE RL A+ P +LS+EE E
Sbjct: 519 SPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERE 571
Score = 146 (56.5 bits), Expect = 5.5e-98, Sum P(4) = 5.5e-98
Identities = 31/71 (43%), Positives = 38/71 (53%)
Query: 295 EVEFIFVRLSVLREYLEKEL-AMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIR 353
E F + L +LREYLE E A+ + +DDWV M F VGNDF+PHLP L I
Sbjct: 240 ETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299
Query: 354 EGAVDRLVNLY 364
A+ L Y
Sbjct: 300 SNALPLLYRTY 310
Score = 79 (32.9 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 44/155 (28%), Positives = 69/155 (44%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDSSKPNPNGMEFDNLYLDMNGII 59
MGVP FFR++S +YP C+ + +E IP FD+ + NG+ + + D N I
Sbjct: 1 MGVPKFFRYISERYP-----CLSELARE---HCIPEFDNLYLDMNGIVHNCSHPDDNNI- 51
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECI--DRLFRI----VRPRKLLYMAIDGVAPRAKMNQ 113
H H E++ ++ + +F I RLF + V PR A +
Sbjct: 52 H--FHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPR----------AKMNQQRS 99
Query: 114 QRSRRFRASKETAEKIAEVARIREKLLADG-CILP 147
+R R R +++ K A+ +RE D CI P
Sbjct: 100 RRFRTAREAEQQEAKAAQRGELREHERFDSNCITP 134
Score = 45 (20.9 bits), Expect = 2.7e-82, Sum P(4) = 2.7e-82
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 588 TYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
T G + ++G + L R+Q+ + L +E + FK+
Sbjct: 316 TLGGNINENGKLNLRRLQIFISALTEVELDHFKE 349
Score = 45 (20.9 bits), Expect = 4.1e-56, Sum P(2) = 4.1e-56
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 313 ELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLP-SLEIREGAV 357
E+A+ NLP+ E L + FF G + HLP E+R V
Sbjct: 614 EIAV-NLPYSVCIE--LPNAARTVFFPGFPTMQHLPFDFELRNDRV 656
>POMBASE|SPAC17A5.14 [details] [associations]
symbol:exo2 "exonuclease II Exo2" species:4896
"Schizosaccharomyces pombe" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0000741
"karyogamy" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IDA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IDA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 PomBase:SPAC17A5.14 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 GO:GO:0000184 GenomeReviews:CU329670_GR GO:GO:0000287
GO:GO:0003723 GO:GO:0000932 GO:GO:0006402 GO:GO:0005874
GO:GO:0006364 GO:GO:0000741 eggNOG:COG5049 KO:K12618 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 EMBL:L35232
PIR:S78457 RefSeq:NP_593482.1 STRING:P40383
EnsemblFungi:SPAC17A5.14.1 GeneID:2542204 KEGG:spo:SPAC17A5.14
HOGENOM:HOG000160331 OrthoDB:EOG4PP1R0 NextBio:20803274
Uniprot:P40383
Length = 1328
Score = 621 (223.7 bits), Expect = 8.4e-96, Sum P(5) = 8.4e-96
Identities = 139/293 (47%), Positives = 192/293 (65%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPA--PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGI+H CTH D + P E+EM +AIF I+ LF ++P+KLLYMA+DG
Sbjct: 28 EFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
APRAKMNQQRSRRFR +K+ A AR++ + +G P E+ FDSNCITPG
Sbjct: 88 CAPRAKMNQQRSRRFRTAKD-----AHDARLKAE--RNGEDFPEEQ-----FDSNCITPG 135
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FM R+S L+Y+IH ++ ND W+ I+VI S + PGEGEHKIM+YIR Q+AQP ++P
Sbjct: 136 TTFMERVSRQLYYFIHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNP 195
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREE--FKP-NQARPCDVCGQ---MGHE--MKE 276
NT+HCL G DADLIMLGL +H+P+F ++REE F P ++ R ++ Q + H ++E
Sbjct: 196 NTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNRSKELAHQKFYLLHLSLLRE 255
Query: 277 CVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERAL 329
+ + + S TF ++E I +L ++ + +P+LP + E AL
Sbjct: 256 YLEFEFQ-ECRSTFTFKYDLEKILDDFILLAFFVGNDF-LPHLPGLHINEGAL 306
Score = 186 (70.5 bits), Expect = 1.7e-36, Sum P(4) = 1.7e-36
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 297 EFIFVRLSVLREYLEKEL--AMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIRE 354
+F + LS+LREYLE E F Y E+ LDD++ + FFVGNDFLPHLP L I E
Sbjct: 244 KFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINE 303
Query: 355 GAVDRLVNLYKKTV 368
GA+ + ++YKK +
Sbjct: 304 GALALMFSIYKKVM 317
Score = 174 (66.3 bits), Expect = 8.4e-96, Sum P(5) = 8.4e-96
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 415 FKDRYYESKFDVPK-DDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASD 473
+KD YY SK D+ A + M YV GL WVL YYY+GC+SW WY+ +H+AP SD
Sbjct: 496 WKDDYYRSKVGFSYYDEEALKAMA-ERYVEGLQWVLFYYYRGCQSWGWYYNYHFAPKISD 554
Query: 474 FINIAEVDTNFETGT 488
+ +V +F+ GT
Sbjct: 555 VLKGLDVKIDFKMGT 569
Score = 148 (57.2 bits), Expect = 8.4e-96, Sum P(5) = 8.4e-96
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+SPIIDFYPE+F +D NGK +W+ V ++PF+DE RL ALA + L+ EE
Sbjct: 601 ESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEE 652
Score = 73 (30.8 bits), Expect = 8.4e-96, Sum P(5) = 8.4e-96
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDSSKPNPNGM 46
MG+P FFRW+S +YP C Q + +IP FD+ + NG+
Sbjct: 1 MGIPKFFRWMSERYPL----C----SQLIENDRIPEFDNLYLDMNGI 39
Score = 63 (27.2 bits), Expect = 9.4e-82, Sum P(4) = 9.4e-82
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTET 627
G++ + G + + R++LI+ +L E EIFK + +ET
Sbjct: 322 GYINEKGVINMARLELILLELENFEKEIFKA-EVSET 357
Score = 41 (19.5 bits), Expect = 8.4e-96, Sum P(5) = 8.4e-96
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 351 EIREGAVDRLVNLYKKTVYKTQEQLRQEEN 380
EI + ++R++ Y +EQ +E+N
Sbjct: 459 EIEQDEIERVLQKYDNIPLLNEEQALKEKN 488
Score = 41 (19.5 bits), Expect = 1.1e-84, Sum P(5) = 1.1e-84
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEES 717
+P + ED K L ++ A Q V FVD L +A Y + +++ES
Sbjct: 748 NPSVIVNVEDVKSALTSEQIAMQYVGKRIFVDWPYLREA----YVESAMDES 795
Score = 41 (19.5 bits), Expect = 7.4e-71, Sum P(5) = 7.4e-71
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 436 MVGHEYVLGLC 446
M G EY++GLC
Sbjct: 699 MEGKEYLVGLC 709
>ASPGD|ASPL0000014026 [details] [associations]
symbol:AN11052 species:162425 "Emericella nidulans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 EMBL:BN001302
GO:GO:0008409 OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
EnsemblFungi:CADANIAT00004228 Uniprot:C8V746
Length = 1398
Score = 628 (226.1 bits), Expect = 9.9e-95, Sum P(4) = 9.9e-95
Identities = 142/323 (43%), Positives = 203/323 (62%)
Query: 47 EFDNLYLDMNGIIHPCTHPE-DKPAPK-DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH CTH + D P + ED+M +AIF I+ L+ ++P+KL +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHNCTHKDSDSPTFRMTEDKMFIAIFNYIEHLYGKIKPKKLFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR+RRFR + + AE A+ EK +A G +P E FDSNCITPG
Sbjct: 88 VAPRAKMNQQRARRFRTALD-----AEQAK--EKAIAQGIEMPKEDP----FDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMA+L+ L Y+I +++ D W+G++++LS VPGEGEHKIM+YIR +AQP +DP
Sbjct: 137 TEFMAKLTEQLKYFISKKISEDKDWQGVEIVLSGHEVPGEGEHKIMEYIRHAKAQPGYDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEF---KPNQARPCDVCGQ---MGH--EMKE 276
N +HCL G DADLIMLGL +H+P+F ++REE + Q +P ++ Q + H ++E
Sbjct: 197 NVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQVQKKPKELEHQNFYLLHLCMVRE 256
Query: 277 CVGLD-AEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFM 335
+ L+ E E +I F E E + ++ ++ + +PNLP + E AL +
Sbjct: 257 YLQLEFQELEEEGIIDFPYEFERVIDDFILMAFFVGNDF-LPNLPNLHINEGALS----L 311
Query: 336 CFFVGNDFLPHLPSLEIREGAVD 358
F V + LP + +G ++
Sbjct: 312 MFKVYKEVLPKMGGYINEQGTIN 334
Score = 182 (69.1 bits), Expect = 8.9e-37, Sum P(4) = 8.9e-37
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 298 FIFVRLSVLREYLE---KELAMPNL-PFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIR 353
F + L ++REYL+ +EL + FPY FER +DD++ M FFVGNDFLP+LP+L I
Sbjct: 246 FYLLHLCMVREYLQLEFQELEEEGIIDFPYEFERVIDDFILMAFFVGNDFLPNLPNLHIN 305
Query: 354 EGAVDRLVNLYKKTVYK 370
EGA+ + +YK+ + K
Sbjct: 306 EGALSLMFKVYKEVLPK 322
Score = 162 (62.1 bits), Expect = 9.9e-95, Sum P(4) = 9.9e-95
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
DSPIIDFYP DF++D+NGKK W+ V +PF+DE RL ALA L+ EE
Sbjct: 613 DSPIIDFYPRDFELDMNGKKMEWEAVVKIPFIDERRLLDALATREHLLTPEE 664
Score = 160 (61.4 bits), Expect = 9.9e-95, Sum P(4) = 9.9e-95
Identities = 32/73 (43%), Positives = 38/73 (52%)
Query: 415 FKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDF 474
+KD+YY KF D+ + YV GL WVL YYY+G SW W+F HYAP SD
Sbjct: 508 WKDKYYMEKFGWGLDNHEEMRKLTENYVQGLQWVLFYYYRGIASWPWFFNSHYAPMISDV 567
Query: 475 INIAEVDTNFETG 487
D NF G
Sbjct: 568 KKGLNADMNFRLG 580
Score = 81 (33.6 bits), Expect = 9.9e-95, Sum P(4) = 9.9e-95
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQE 28
MGVP FFRWLS +YP++ + E++ E
Sbjct: 1 MGVPKFFRWLSERYPAISMLIAENRIPE 28
Score = 58 (25.5 bits), Expect = 7.5e-84, Sum P(4) = 7.5e-84
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 651 KAPSFIPGGQFAPQDSPI--IDFYPEDFKIDLNGKKFAW 687
K P FI G Q P++ DFYP D +D + AW
Sbjct: 1047 KFPQFIAGIQRNPRNDRYQPTDFYPPDIALDKINEIKAW 1085
Score = 48 (22.0 bits), Expect = 5.1e-83, Sum P(4) = 5.1e-83
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 581 KLFSRMLT-YPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTET 627
K++ +L G++ + G + L+R+ +++ L +E F+ T
Sbjct: 314 KVYKEVLPKMGGYINEQGTINLQRLGVLLDALSHVEYRFFEAEYSDAT 361
>UNIPROTKB|E1C8R7 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071044
"histone mRNA catabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 CTD:54464 KO:K12618
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AADN02024099 IPI:IPI00596046
RefSeq:XP_422596.3 UniGene:Gga.23111 Ensembl:ENSGALT00000004266
GeneID:424778 KEGG:gga:424778 Uniprot:E1C8R7
Length = 1736
Score = 629 (226.5 bits), Expect = 1.1e-93, Sum P(4) = 1.1e-93
Identities = 136/284 (47%), Positives = 182/284 (64%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D ED++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K L G ILP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKALEKGEILPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+GI V LS PGEGEHKIM++IR ++A+P HDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHKIMEFIRSEKAKPHHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFK---PNQARPC---DVCGQMGHE--MKE 276
NT+HCL G DADLIMLGL THE +F ++REE + R C + + H M+E
Sbjct: 197 NTRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQRACAPEETTFHLLHLSLMRE 256
Query: 277 CVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLP 320
+ + P + I+F ++E I + +L +L +P+LP
Sbjct: 257 YIDYEFSPVKDK-ISFDYDIEKI-IDDWILMGFLVGNDFIPHLP 298
Score = 175 (66.7 bits), Expect = 1.1e-93, Sum P(4) = 1.1e-93
Identities = 33/75 (44%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K +V DD F YV + W+L YYY G +SW WY+P+HYAP+ S
Sbjct: 432 YKRTYYMTKMGIEVVSDD--FLADQAECYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLS 489
Query: 473 DFINIAEVDTNFETG 487
D NI+E+ FE G
Sbjct: 490 DIRNISELKIQFELG 504
Score = 159 (61.0 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELA--MPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y E+ +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSPVKDKISFDYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYRTY 314
Score = 154 (59.3 bits), Expect = 1.1e-93, Sum P(4) = 1.1e-93
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
QDSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ + L EE
Sbjct: 536 QDSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEE 588
Score = 71 (30.1 bits), Expect = 1.1e-93, Sum P(4) = 1.1e-93
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIP-FDSSKPNPNGM 46
MGVP F+RW+S +YP C+ Q + +IP FD+ + NG+
Sbjct: 1 MGVPKFYRWISERYP-----CLS---QVLKEHQIPEFDNLYLDMNGI 39
Score = 40 (19.1 bits), Expect = 8.7e-66, Sum P(3) = 8.7e-66
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 309 YLEKELAMPNLPFPY 323
YLEK+ + LPF Y
Sbjct: 814 YLEKQWSKQALPFVY 828
Score = 37 (18.1 bits), Expect = 2.9e-79, Sum P(4) = 2.9e-79
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ ++G + L+R + + L + E F +
Sbjct: 323 GYINENGHLNLKRFEKYLTRLSDFDREHFSE 353
>UNIPROTKB|Q8IZH2 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005829
GO:GO:0005886 GO:GO:0005794 GO:GO:0010467 GO:GO:0003677
GO:GO:0003723 GO:GO:0045111 GO:GO:0090305 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0043928 GO:GO:0071028
ChiTaRS:XRN1 EMBL:AY137776 EMBL:AL133623 EMBL:BX640905
EMBL:CR627396 EMBL:CR749518 EMBL:BC039314 EMBL:BC048104
EMBL:AK096177 IPI:IPI00328115 IPI:IPI00657645 IPI:IPI00657805
PIR:T43461 RefSeq:NP_001036069.1 RefSeq:NP_061874.3
UniGene:Hs.435103 ProteinModelPortal:Q8IZH2 SMR:Q8IZH2
IntAct:Q8IZH2 STRING:Q8IZH2 PhosphoSite:Q8IZH2 DMDM:74714582
PaxDb:Q8IZH2 PRIDE:Q8IZH2 DNASU:54464 Ensembl:ENST00000264951
Ensembl:ENST00000392981 Ensembl:ENST00000463916 GeneID:54464
KEGG:hsa:54464 UCSC:uc003eus.3 UCSC:uc003euu.3 UCSC:uc003euw.3
CTD:54464 GeneCards:GC03M142025 HGNC:HGNC:30654 HPA:HPA035005
HPA:HPA035006 MIM:607994 neXtProt:NX_Q8IZH2 PharmGKB:PA134878471
eggNOG:COG5049 HOVERGEN:HBG094164 InParanoid:Q8IZH2 KO:K12618
OMA:CKQRKSN OrthoDB:EOG49S65H PhylomeDB:Q8IZH2 GenomeRNAi:54464
NextBio:56731 ArrayExpress:Q8IZH2 Bgee:Q8IZH2 CleanEx:HS_XRN1
Genevestigator:Q8IZH2 GermOnline:ENSG00000114127 InterPro:IPR027073
PANTHER:PTHR12341 Uniprot:Q8IZH2
Length = 1706
Score = 614 (221.2 bits), Expect = 1.0e-87, Sum P(3) = 1.0e-87
Identities = 131/284 (46%), Positives = 181/284 (63%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K + G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCG------QMGHE--MKE 276
NT+HCL G DADLIMLGL +HE +F+++REE + + VC + H M+E
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMRE 256
Query: 277 CVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLP 320
+ + E ITF ++E I + +L +L +P+LP
Sbjct: 257 YIDYEFSVLKEK-ITFKYDIERI-IDDWILMGFLVGNDFIPHLP 298
Score = 180 (68.4 bits), Expect = 1.0e-87, Sum P(3) = 1.0e-87
Identities = 43/124 (34%), Positives = 58/124 (46%)
Query: 369 YKTQEQLRQEENXXXXXXXVKRXXXXXXXXXXXXXXXXXVRLWEDGF---KDRYYESKF- 424
YK +++L+ +EN K L+E F K YY +K
Sbjct: 384 YKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMG 443
Query: 425 -DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTN 483
DV DD F YV + W+L YYY G +SW WY+P+HYAPF SD NI+ + +
Sbjct: 444 VDVVSDD--FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIH 501
Query: 484 FETG 487
FE G
Sbjct: 502 FELG 505
Score = 164 (62.8 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 295 EVEFIFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E ++ + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 155 (59.6 bits), Expect = 1.0e-87, Sum P(3) = 1.0e-87
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 38 (18.4 bits), Expect = 8.0e-73, Sum P(3) = 8.0e-73
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
>RGD|1309713 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA;ISO] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 RGD:1309713 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OrthoDB:EOG49S65H
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
IPI:IPI00373532 Ensembl:ENSRNOT00000014481 UCSC:RGD:1309713
Uniprot:D4ABN8
Length = 1723
Score = 615 (221.5 bits), Expect = 7.3e-87, Sum P(3) = 7.3e-87
Identities = 131/284 (46%), Positives = 181/284 (63%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K + G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCG------QMGHE--MKE 276
NT+HCL G DADLIMLGL +HE +F+++REE + + VC + H M+E
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMRE 256
Query: 277 CVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLP 320
+ + E ITF ++E I + +L +L +P+LP
Sbjct: 257 YIDYEFSALKEK-ITFKYDIEKI-IDDWILMGFLVGNDFIPHLP 298
Score = 171 (65.3 bits), Expect = 7.3e-87, Sum P(3) = 7.3e-87
Identities = 33/75 (44%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV D+ F YV + W+L YYY G +SW WY+P+HYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSDE--FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 473 DFINIAEVDTNFETG 487
D NI+ + +FE G
Sbjct: 491 DIRNISTLKIHFELG 505
Score = 159 (61.0 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y E+ +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 155 (59.6 bits), Expect = 7.3e-87, Sum P(3) = 7.3e-87
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE+RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 38 (18.4 bits), Expect = 6.6e-73, Sum P(3) = 6.6e-73
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFERYLVKLSDFDREHFSE 353
>MGI|MGI:891964 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10090 "Mus
musculus" [GO:0000723 "telomere maintenance" evidence=NAS]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0007126 "meiosis" evidence=NAS]
[GO:0007569 "cell aging" evidence=NAS] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 MGI:MGI:891964 GO:GO:0007126 GO:GO:0003677
GO:GO:0003723 GO:GO:0006396 GO:GO:0000932 GO:GO:0000723
GO:GO:0071044 GO:GO:0007569 CTD:54464 eggNOG:COG5049
HOVERGEN:HBG094164 KO:K12618 OrthoDB:EOG49S65H InterPro:IPR027073
PANTHER:PTHR12341 EMBL:D88026 EMBL:X91617 EMBL:AK142311
EMBL:AK162848 EMBL:AK169840 IPI:IPI00129132 IPI:IPI00668938
IPI:IPI00677614 PIR:T30174 PIR:T30175 PIR:T30244 RefSeq:NP_036046.2
UniGene:Mm.291179 ProteinModelPortal:P97789 SMR:P97789
STRING:P97789 PhosphoSite:P97789 PaxDb:P97789 PRIDE:P97789
GeneID:24127 KEGG:mmu:24127 UCSC:uc009rbw.1 UCSC:uc009rbx.1
HOGENOM:HOG000154879 InParanoid:P97789 NextBio:304159
CleanEx:MM_XRN1 Genevestigator:P97789 GermOnline:ENSMUSG00000032410
GO:GO:0004534 Uniprot:P97789
Length = 1719
Score = 615 (221.5 bits), Expect = 3.1e-86, Sum P(3) = 3.1e-86
Identities = 131/284 (46%), Positives = 181/284 (63%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPG 164
VAPRAKMNQQR RRFR++KE +KI +K + G LP E + FDSNCITPG
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPG 136
Query: 165 TPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDP 224
T FMARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDP
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDP 196
Query: 225 NTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCG------QMGHE--MKE 276
NT+HCL G DADLIMLGL +HE +F+++REE + + VC + H M+E
Sbjct: 197 NTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMRE 256
Query: 277 CVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLP 320
+ + E ITF ++E I + +L +L +P+LP
Sbjct: 257 YIDYEFSALKEK-ITFKYDIEKI-IDDWILMGFLVGNDFIPHLP 298
Score = 167 (63.8 bits), Expect = 3.1e-86, Sum P(3) = 3.1e-86
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 415 FKDRYYESKF--DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFAS 472
+K YY +K DV D+ F YV + W+L YYY G +SW WY+P+HYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSDE--FLANQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 473 DFINIAEVDTNFETG 487
D +I+ + +FE G
Sbjct: 491 DIRSISTLKIHFELG 505
Score = 159 (61.0 bits), Expect = 5.7e-33, Sum P(4) = 5.7e-33
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 295 EVEFIFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E + + F Y E+ +DDW+ M F VGNDF+PHLP L I
Sbjct: 243 ETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 353 REGAVDRLVNLY 364
A+ L Y
Sbjct: 303 NHDALPLLYGTY 314
Score = 153 (58.9 bits), Expect = 3.1e-86, Sum P(3) = 3.1e-86
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 664 QDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEE 716
+DSPII++YP DFK DLNGK+ W+ V L+PF+DE RL +A+ L EE
Sbjct: 537 EDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEE 589
Score = 74 (31.1 bits), Expect = 5.7e-33, Sum P(4) = 5.7e-33
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1 MGVPAFFRWLSRKYP--SVIV--HCVEDKPQ---EVNGQKIPFDSSKPNPNGMEF----D 49
MGVP F+RW+S +YP S +V H + + ++NG I S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNG--IIHQCSHPNDDDVHFRISDD 58
Query: 50 NLYLDM 55
++ D+
Sbjct: 59 KIFTDI 64
Score = 38 (18.4 bits), Expect = 1.1e-72, Sum P(3) = 1.1e-72
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKK 621
G++ +SG + L R + + L + E F +
Sbjct: 323 GYINESGHLNLPRFERYLVKLSDFDREHFSE 353
>DICTYBASE|DDB_G0276137 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0276137 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 RefSeq:XP_643245.1
ProteinModelPortal:Q75JF5 STRING:Q75JF5 EnsemblProtists:DDB0237529
GeneID:8620288 KEGG:ddi:DDB_G0276137 InParanoid:Q75JF5 OMA:GMPYGAM
Uniprot:Q75JF5
Length = 1749
Score = 550 (198.7 bits), Expect = 1.9e-81, Sum P(4) = 1.9e-81
Identities = 139/339 (41%), Positives = 194/339 (57%)
Query: 44 NGMEFDNLYLDMNGIIHPCTHP-EDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAI 102
N E+DNLYLDMNGIIH C+ + E+E++ + +DRLF +RP KL YMAI
Sbjct: 25 NPPEYDNLYLDMNGIIHACSQEFANSLIEFSEEELIRQVCNYVDRLFHTIRPTKLFYMAI 84
Query: 103 DGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCIT 162
DGVAPR+K+NQQR RRF S EK+ ++KL+++G +P F+ IT
Sbjct: 85 DGVAPRSKINQQRQRRF-LSVHRDEKL------KQKLISEGKPVPEVI-----FNRTAIT 132
Query: 163 PGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDH 222
PGT FM LS + +YI +++ D W+ ++VI S PGEGEHKI+DYIRK +A PD
Sbjct: 133 PGTQFMYNLSESIQFYIKKKISEDLSWREVRVIFSGPENPGEGEHKIIDYIRKNKASPDW 192
Query: 223 DPNTQHCLCGADADLIMLGLATHEPNFTIIREE--FKPNQARPCDVCGQMGHEMKECVGL 280
D N HCL G DADLI+LGL THEPNF+I+REE FKP + R D Q+ H L
Sbjct: 193 DANQSHCLYGLDADLILLGLITHEPNFSILREEISFKPTK-RQLDF--QLLHISLLREYL 249
Query: 281 DAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVG 340
D E + + FG ++E I ++ + + +P+LPF + L+ +F +
Sbjct: 250 DLELRNDD-LEFGYDLERIIDDFILIMIFFGNDF-LPHLPFLEISKGGLNS-IFELY--- 303
Query: 341 NDFLPHLPSLEIREGA---VDRLVNLYK--KTVYKTQEQ 374
LP L + EGA ++RL + +K + K Q+Q
Sbjct: 304 KSSLPSLGGY-LTEGATIDLERLQHFFKFLQKFEKKQQQ 341
Score = 183 (69.5 bits), Expect = 1.9e-81, Sum P(4) = 1.9e-81
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 418 RYYESKFDVPKDDI-AFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFIN 476
R Y ++F D+I AF+ V YV GL WVL YY+ GC SW W++PF+YAP A DF N
Sbjct: 421 RQYFNEFPNTLDEIKAFKEKVVLSYVEGLVWVLNYYHNGCISWVWFYPFYYAPLAIDFNN 480
Query: 477 IAEVDTNFETGTQPV 491
I ++ +F+ G +P+
Sbjct: 481 IPDLHIDFQPG-EPI 494
Score = 96 (38.9 bits), Expect = 1.9e-81, Sum P(4) = 1.9e-81
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 666 SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLS 713
SPIIDFYP +F+ID + + G+A L F+D +RL A A + L+
Sbjct: 525 SPIIDFYPVEFEIDTKDPHY-FDGIAELGFIDHQRLLDATASIKKSLA 571
Score = 85 (35.0 bits), Expect = 1.9e-81, Sum P(4) = 1.9e-81
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQE 28
MGVP FFRW+S +YP ++ ++ P E
Sbjct: 1 MGVPRFFRWVSERYPQILQKILDSNPPE 28
Score = 48 (22.0 bits), Expect = 2.3e-67, Sum P(4) = 2.3e-67
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 591 GFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQ 624
G+LT+ + LER+Q + L E KK+QQ
Sbjct: 312 GYLTEGATIDLERLQHFFKFLQKFE----KKQQQ 341
>GENEDB_PFALCIPARUM|PF11_0074 [details] [associations]
symbol:PF11_0074 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159
PROSITE:PS50817 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE014186 GO:GO:0016539 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 261 (96.9 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 59/183 (32%), Positives = 92/183 (50%)
Query: 309 YLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTV 368
Y+ K N+ F S R +DD VF+ F VGNDFLPH+P+++I EG+++ ++N Y +
Sbjct: 460 YINKLKKEKNIVF--SISRVVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYI 517
Query: 369 YKTQEQLRQEENXXXXXXXV--KRXXXXXXXXXXXXXXXXXVRLWEDG--FKDRYYESKF 424
YK + ++ + K + + D +K YY KF
Sbjct: 518 YKYSNYITYKDKVHIERLKIILKILSAQEFEYFKKRGINENISEFTDEQKYKKYYYLHKF 577
Query: 425 DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNF 484
+ +D + +V +Y+ GL W L YY+ GC SW W +P+HYAP SD ++ + D F
Sbjct: 578 GL-EDPKEIQNIV-KKYIEGLFWNLHYYHFGCASWYWEYPYHYAPLCSDLLSFEKSDFFF 635
Query: 485 ETG 487
E G
Sbjct: 636 EKG 638
Score = 205 (77.2 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 42 NPNGMEFDNLYLDMNGIIHPCTHPEDKPAP-KDEDEMMVAIFECIDRLFRIVRPRKLLYM 100
N D Y+DMNG+IH CTH + P DE E+ I + + LF +++P+KL+Y+
Sbjct: 68 NEKQKSVDIFYIDMNGVIHHCTHANKEKLPIYDEHELFSNILQYLKNLFYLIKPKKLIYI 127
Query: 101 AIDGVAPRAKMNQQRSRRF 119
+DGV+P+AKMNQQR RRF
Sbjct: 128 GVDGVSPKAKMNQQRKRRF 146
Score = 200 (75.5 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 156 FDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRK 215
F+ NCIT GT FM +++ L+ + L ++ VI S ++V GEGEHKI+ YIR+
Sbjct: 162 FNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVFE-FDVIFSGSDVAGEGEHKILKYIRE 219
Query: 216 QRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFK 257
+ + N HC+ G DADLIML L TH N I+R++FK
Sbjct: 220 NCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRDKFK 261
Score = 89 (36.4 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLS 713
+ + F+PE+ KID NGKK W+ + LPF++ ++K + + +S
Sbjct: 669 EDEVKSFFPENVKIDPNGKKETWEYIVHLPFINCNMINKIITEKSKTIS 717
Score = 64 (27.6 bits), Expect = 1.7e-37, Sum P(5) = 1.7e-37
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 589 YPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKR 622
Y ++T V +ER+++I++ L E E FKKR
Sbjct: 520 YSNYITYKDKVHIERLKIILKILSAQEFEYFKKR 553
Score = 56 (24.8 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 2 GVPAFFRWLSRKYPSVIVHCVEDKPQE 28
G+P ++WL+ YP+V + ++ Q+
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNEKQK 72
>UNIPROTKB|Q8IIU0 [details] [associations]
symbol:PF11_0074 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159 PROSITE:PS50817
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 EMBL:AE014186
GO:GO:0016539 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 261 (96.9 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 59/183 (32%), Positives = 92/183 (50%)
Query: 309 YLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTV 368
Y+ K N+ F S R +DD VF+ F VGNDFLPH+P+++I EG+++ ++N Y +
Sbjct: 460 YINKLKKEKNIVF--SISRVVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYI 517
Query: 369 YKTQEQLRQEENXXXXXXXV--KRXXXXXXXXXXXXXXXXXVRLWEDG--FKDRYYESKF 424
YK + ++ + K + + D +K YY KF
Sbjct: 518 YKYSNYITYKDKVHIERLKIILKILSAQEFEYFKKRGINENISEFTDEQKYKKYYYLHKF 577
Query: 425 DVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNF 484
+ +D + +V +Y+ GL W L YY+ GC SW W +P+HYAP SD ++ + D F
Sbjct: 578 GL-EDPKEIQNIV-KKYIEGLFWNLHYYHFGCASWYWEYPYHYAPLCSDLLSFEKSDFFF 635
Query: 485 ETG 487
E G
Sbjct: 636 EKG 638
Score = 205 (77.2 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 42 NPNGMEFDNLYLDMNGIIHPCTHPEDKPAP-KDEDEMMVAIFECIDRLFRIVRPRKLLYM 100
N D Y+DMNG+IH CTH + P DE E+ I + + LF +++P+KL+Y+
Sbjct: 68 NEKQKSVDIFYIDMNGVIHHCTHANKEKLPIYDEHELFSNILQYLKNLFYLIKPKKLIYI 127
Query: 101 AIDGVAPRAKMNQQRSRRF 119
+DGV+P+AKMNQQR RRF
Sbjct: 128 GVDGVSPKAKMNQQRKRRF 146
Score = 200 (75.5 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 156 FDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRK 215
F+ NCIT GT FM +++ L+ + L ++ VI S ++V GEGEHKI+ YIR+
Sbjct: 162 FNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVFE-FDVIFSGSDVAGEGEHKILKYIRE 219
Query: 216 QRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFK 257
+ + N HC+ G DADLIML L TH N I+R++FK
Sbjct: 220 NCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRDKFK 261
Score = 89 (36.4 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 665 DSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLS 713
+ + F+PE+ KID NGKK W+ + LPF++ ++K + + +S
Sbjct: 669 EDEVKSFFPENVKIDPNGKKETWEYIVHLPFINCNMINKIITEKSKTIS 717
Score = 64 (27.6 bits), Expect = 1.7e-37, Sum P(5) = 1.7e-37
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 589 YPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKR 622
Y ++T V +ER+++I++ L E E FKKR
Sbjct: 520 YSNYITYKDKVHIERLKIILKILSAQEFEYFKKR 553
Score = 56 (24.8 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 2 GVPAFFRWLSRKYPSVIVHCVEDKPQE 28
G+P ++WL+ YP+V + ++ Q+
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNEKQK 72
>DICTYBASE|DDB_G0289921 [details] [associations]
symbol:DDB_G0289921 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004859
InterPro:IPR012677 Pfam:PF00076 Pfam:PF03159 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0289921 Pfam:PF06201 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000149
GO:GO:0004527 InterPro:IPR008979 SUPFAM:SSF49785
Gene3D:2.60.120.470 InterPro:IPR010400 PROSITE:PS51532
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 KO:K12619
RefSeq:XP_635977.1 ProteinModelPortal:Q54GU2
EnsemblProtists:DDB0188640 GeneID:8627392 KEGG:ddi:DDB_G0289921
InParanoid:Q54GU2 OMA:MDADLIF Uniprot:Q54GU2
Length = 1235
Score = 358 (131.1 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 96/293 (32%), Positives = 146/293 (49%)
Query: 1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
MG+P+F+RWL +P V+ + + E+ + D + N ++ D+ +
Sbjct: 1 MGIPSFYRWLIENFPKVLENNLNG---EIKFNNLYIDMNGVVHNAIKLDHSPTSSSSSSS 57
Query: 61 PCTHPEDKPAP---KDEDEMMVA------------IFECIDRLFRIVRPRKLLYMAIDGV 105
T P P KD++ +++ IF +D++ V P LLY+ +DGV
Sbjct: 58 TTTTPPTTPTTTYSKDKEVVLMLKSELSDEKLKERIFYRLDQMVNNVNPSSLLYIGVDGV 117
Query: 106 APRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGT 165
PRAK +QR RRF++SKET + I + + + K + I+ ++ FDSN I+P T
Sbjct: 118 PPRAKAIEQRKRRFKSSKETVDVIIKQLKSKSKPITRDSII---EQFSLIFDSNSISPAT 174
Query: 166 PFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPN 225
F+ ++ + Y +L+ + + +ILSD+ VPGEGEHKIMDYIR+ D
Sbjct: 175 EFIEKVDDWIKDYCK-QLSLKR--QNLSIILSDSTVPGEGEHKIMDYIRQNHPILKKD-G 230
Query: 226 TQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVC-GQMGHEMKEC 277
HC G DADLI LGL +H NF I+R+ P C C H EC
Sbjct: 231 MSHCFYGMDADLIFLGLESHLSNFYILRD---PISLISCSTCKANDDHSNYEC 280
Score = 176 (67.0 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 419 YYESKFD-VPKDDIAFRLMVG---HEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDF 474
YY KFD + K D + +V ++Y LGL WVL+YY GC++W WY+P+HYAP A D
Sbjct: 771 YYRVKFDLIGKPDDQVKKLVDDMCYQYTLGLHWVLRYYVSGCQAWDWYYPYHYAPLAKDL 830
Query: 475 IN 476
+N
Sbjct: 831 LN 832
Score = 130 (50.8 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 295 EVEFIFVRLSVLREYLEK---ELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLE 351
++ F +V + R YLE E + +F R ++D+ +CF++GNDFLPHLPS+
Sbjct: 613 KILFDYVNIDSFRTYLEYYFFEKIEKSKREKINFNRVINDFTVLCFYLGNDFLPHLPSVG 672
Query: 352 IREGAVDRLVNLYKKTV 368
I+ G+++ ++ Y++ +
Sbjct: 673 IQSGSIELIMCWYREWI 689
Score = 100 (40.3 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 654 SFIPGGQ--FAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAP 707
+F+P ++SP Y +D+K D NG+ AW+ + LL F+D E+ + L P
Sbjct: 874 AFLPDSMKHIVNENSPFTASYRDDYKYDFNGENVAWKAIVLLDFMDIEKFKEYLLP 929
>UNIPROTKB|C9JCZ8 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] InterPro:IPR004859
Pfam:PF03159 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00979282 ProteinModelPortal:C9JCZ8 SMR:C9JCZ8
STRING:C9JCZ8 Ensembl:ENST00000477237 ArrayExpress:C9JCZ8
Bgee:C9JCZ8 Uniprot:C9JCZ8
Length = 165
Score = 292 (107.8 bits), Expect = 6.6e-25, P = 6.6e-25
Identities = 64/161 (39%), Positives = 97/161 (60%)
Query: 168 MARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQ 227
MARL L Y+++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+
Sbjct: 1 MARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTR 60
Query: 228 HCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCG------QMGHE--MKECVG 279
HCL G DADLIMLGL +HE +F+++REE + + VC + H M+E +
Sbjct: 61 HCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYID 120
Query: 280 LDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLP 320
+ E ITF ++E I + +L +L +P+LP
Sbjct: 121 YEFSVLKEK-ITFKYDIERI-IDDWILMGFLVGNDFIPHLP 159
Score = 154 (59.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 295 EVEFIFVRLSVLREYLEKELAM--PNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEI 352
E F + LS++REY++ E ++ + F Y ER +DDW+ M F VGNDF+PHLP L I
Sbjct: 104 ETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 163
>UNIPROTKB|F8WDA0 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00792899 ProteinModelPortal:F8WDA0 SMR:F8WDA0
Ensembl:ENST00000486211 ArrayExpress:F8WDA0 Bgee:F8WDA0
Uniprot:F8WDA0
Length = 107
Score = 251 (93.4 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 47/76 (61%), Positives = 58/76 (76%)
Query: 47 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 104
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQRSRRFR 120
VAPRAKMNQQR RRFR
Sbjct: 88 VAPRAKMNQQRGRRFR 103
>DICTYBASE|DDB_G0272997 [details] [associations]
symbol:DDB_G0272997 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0272997 GO:GO:0003676 GO:GO:0005622
EMBL:AAFI02000008 GO:GO:0004527 eggNOG:COG5049 RefSeq:XP_644931.1
EnsemblProtists:DDB0217078 GeneID:8618610 KEGG:ddi:DDB_G0272997
InParanoid:Q558Y5 OMA:NSKFNNS Uniprot:Q558Y5
Length = 1114
Score = 168 (64.2 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 81/327 (24%), Positives = 137/327 (41%)
Query: 49 DNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPR 108
D++Y+D+N +H D E + + ID + R VR + ++ IDG PR
Sbjct: 26 DHVYIDLNNYLHKSVKRGDNSKLNTEVNVFRILKSFIDGILRKVRVKHSVFFGIDGPGPR 85
Query: 109 AKMNQQRSRRFR------------ASKETAEKIAEVARIREKLLADGCILPPEKEKG--S 154
+KM QR RR + +KE ++ + + + L D L K S
Sbjct: 86 SKMILQRERRLKNGNIDKLKYFINRNKEQQQQQQQQQQ-QSPQLHDYDYLNENDLKSFDS 144
Query: 155 HFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIR 214
F + TPGT FM +L L +Y ++L + K+ +S ++ GEGE KI + I
Sbjct: 145 SFSTLEFTPGTTFMGKLKDFLIFYTKNKL-----YFAKKIFISASDRIGEGEFKIFEQIL 199
Query: 215 KQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREE----FKPNQARP-----CD 265
P +D T + +D+D+++ L + N I ++ K ++ R C
Sbjct: 200 NSN-YPINDSFT---IVSSDSDILLFSLLSKYKNVYIYNKDSEEIIKIDKIRDKIYQQCY 255
Query: 266 VCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSF 325
Q + ++ G + E E + T E E + + E E+E
Sbjct: 256 KKKQKKQKQQKKSGGEVEGEGEGIATEEKE-EGVQIEEEEEEEEEEEEDISKR------- 307
Query: 326 ERALDDWVFMCFFVGNDFLPHLPSLEI 352
+A+ D+V + F +G D LP + S I
Sbjct: 308 RQAIVDFVMLTFLMGTDHLPKVSSYNI 334
Score = 56 (24.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 435 LMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFIN--IAEVDTNFETGTQPVN 492
+++ H Y+ GL W + Y+ C + + FP + F N I ++ N +
Sbjct: 637 ILLNH-YLYGLIWHINYFGGKCNDFNFSFPIKSVISSEVFKNFPIRFLNNNNNNNNSNND 695
Query: 493 NN 494
NN
Sbjct: 696 NN 697
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 718 659 0.00097 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 625 (66 KB)
Total size of DFA: 391 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 51.86u 0.10s 51.96t Elapsed: 00:00:07
Total cpu time: 51.88u 0.10s 51.98t Elapsed: 00:00:08
Start: Thu Aug 15 16:47:33 2013 End: Thu Aug 15 16:47:41 2013