RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1016
         (718 letters)



>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency
           virus type 1, different isolates [TaxId: 11676]}
          Length = 42

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 255 EFKPNQARPCDVCGQMGHEMKEC 277
             +  + + C  CG+ GH+MK+C
Sbjct: 16  NCRAPRKKGCWKCGKEGHQMKDC 38


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
           Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 26.2 bits (57), Expect = 4.2
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 23/73 (31%)

Query: 221 DHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGL 280
            +DPN  +C+C             H   F I            CD C +  H   +CVG+
Sbjct: 11  VYDPNALYCICRQP----------HNNRFMIC-----------CDRCEEWFH--GDCVGI 47

Query: 281 DAEPNPESVITFG 293
                        
Sbjct: 48  SEARGRLLERNGE 60


>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464
           {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 148

 Score = 26.2 bits (58), Expect = 9.2
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 74  EDEMMVAIFECIDRLFRIVRPRKLLYMA-----IDGVAPRAKMNQQRSRRFRASKETAEK 128
            D +  A+ E       I R R +L++       D  A    ++Q  +     +++  E+
Sbjct: 25  TDALRKALAEAPKHTANIARKRHILFIGKLMRDQDQEAILVLLDQLDAS----TRQYNER 80

Query: 129 IAEVARIREKLLADG 143
              + R R++L+A  
Sbjct: 81  FHNLERWRDRLIAGD 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,896,890
Number of extensions: 146235
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 8
Length of query: 718
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 626
Effective length of database: 1,144,436
Effective search space: 716416936
Effective search space used: 716416936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)