BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10160
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 355 bits (910), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 166/211 (78%), Positives = 190/211 (90%)
Query: 348 LTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP 407
LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR GLGEL LP
Sbjct: 280 LTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP 339
Query: 408 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467
ENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+++ NVL S
Sbjct: 340 ENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHS 399
Query: 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEG 527
RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKIAKTAHK G
Sbjct: 400 ARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 459
Query: 528 TTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 460 STLKETAIELGYLTAEQFDEWVKPKDMLGPK 490
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/219 (71%), Positives = 175/219 (79%)
Query: 337 LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASG 396
+ K A K+AE T PFK+APNKFE+LAAHDALVE SG LNT+AVSLMKIANDIR L SG
Sbjct: 263 FDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSG 322
Query: 397 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456
PRCGLGEL LPENEPGSSIMPGKVNPTQ EALTMV QVMGNHV VTI GSNGH ELNVF
Sbjct: 323 PRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVF 382
Query: 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKA 516
KP+I+ N+L+SI L++DS +F CV G+ N I+ L +SLMLVT LNPHIGYD A
Sbjct: 383 KPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNA 442
Query: 517 AKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDML 555
AKIAK AHK G TLK AA KL +L+EEEF+K VVPE M+
Sbjct: 443 AKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 317 bits (811), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/218 (70%), Positives = 177/218 (81%)
Query: 341 CAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCG 400
AA+I LTGLPF SAPNKFE +AA DALV GAL TVA SLMKIANDIR+LASGPRCG
Sbjct: 242 VAAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCG 301
Query: 401 LGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460
LGELS+PENEPGSSIMPGKVNPTQ EA+TM+ QV GN VAV GG++G+FELNVF+P+I
Sbjct: 302 LGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAVNFGGASGNFELNVFRPMI 361
Query: 461 VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIA 520
NVL+S+RL+AD A F D C GI N I LL+ESLMLVTALNPHIGYDKAA+IA
Sbjct: 362 AHNVLQSVRLLADGAQGFNDHCAVGIEPNRARIDALLNESLMLVTALNPHIGYDKAAQIA 421
Query: 521 KTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
K AHKEGTTLK AAL LGY+T+ +F++WV PE M+G +
Sbjct: 422 KKAHKEGTTLKAAALALGYVTDAQFDEWVRPEHMVGNR 459
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/222 (68%), Positives = 180/222 (81%)
Query: 337 LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASG 396
+ K A +I++ TGL F++APN+FEALAAHDA+VE SGALNT+A SL KIA DIR+L SG
Sbjct: 267 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 326
Query: 397 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456
PRCG EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVF
Sbjct: 327 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 386
Query: 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKA 516
KP++++N+L SIRLI D+A +F CV GI ANE IH LL +SLMLVTALNP IGYD A
Sbjct: 387 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 446
Query: 517 AKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+K+AK AHK+G TLK +AL+LG LTE+EF++WVVPE MLGPK
Sbjct: 447 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/218 (66%), Positives = 165/218 (75%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A +IA +TG+ F SAPNKFEALAAHD+ V GA+N A +L KIANDIRFL SGPR
Sbjct: 277 KVAEEIAAITGIGFTSAPNKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLGSGPRS 336
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSI PGKVNPTQCEALT V QV GNH A+T GS GHFELNV+ PL
Sbjct: 337 GLGELSLPENEPGSSIXPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPL 396
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
N L+S++L+AD+A +FTD CV GI A E+NI L SL LVTAL P IGYD AAKI
Sbjct: 397 XAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLXLVTALAPKIGYDNAAKI 456
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
AKTAHK GTTL+ A+ GY+T+EEF+ V PE +GP
Sbjct: 457 AKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETXIGP 494
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 288 bits (738), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 143/217 (65%), Positives = 177/217 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PEN+PGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENQPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 154/217 (70%)
Query: 341 CAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCG 400
A +AE TGLPF+ A N+F ALAAHD LV V GA+ T+A +LMKI ND+R+LASGP G
Sbjct: 246 VAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAG 305
Query: 401 LGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460
+GE+++P NEPGSSIMPGKVNPTQ EALTMV +V GN V GS G+F+LNV+KP++
Sbjct: 306 IGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVM 365
Query: 461 VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIA 520
+ L SI L+AD+ +F GI N E I L ++ ML TALN IGYDKAA+I
Sbjct: 366 AYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIV 425
Query: 521 KTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
K A KE TLK AAL+LGYLTEEEF++ VVP + P
Sbjct: 426 KKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKP 462
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 201 bits (512), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 141/213 (66%), Gaps = 5/213 (2%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
K + + TGLP ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 253 KVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 312
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PGSSIMPGKVNP EA+T VAAQV+GN AV GG+NG FELNV+ P
Sbjct: 313 TGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAVAWGGANGAFELNVYIP 372
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S L+ + + F +C++G+ AN E++ L S +VT LN IGY++AA
Sbjct: 373 MMARNILESFTLLTNVSKLFAQRCIAGLTANAEHLRELAESSPSIVTPLNSAIGYEEAAA 432
Query: 519 IAKTAHKEGTTLKVAALKLGY----LTEEEFNK 547
+AK A KE T++ + G L+ EE ++
Sbjct: 433 VAKQALKERKTIRQTVIDRGLIGDKLSLEELDR 465
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 138/205 (67%), Gaps = 1/205 (0%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
+ A + TGL ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 266 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 325
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+ P
Sbjct: 326 TGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIP 385
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S +L+ + + F +C++G+ AN E++ RL S +VT LN IGY++AA
Sbjct: 386 MMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAA 445
Query: 519 IAKTAHKEGTTLKVAALKLGYLTEE 543
+AK A KE T++ + G + +
Sbjct: 446 VAKQALKERKTIRQTVIDRGLIGDR 470
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 138/205 (67%), Gaps = 1/205 (0%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
+ A + TGL ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 245 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 304
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+ P
Sbjct: 305 TGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIP 364
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S +L+ + + F +C++G+ AN E++ RL S +VT LN IGY++AA
Sbjct: 365 MMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAA 424
Query: 519 IAKTAHKEGTTLKVAALKLGYLTEE 543
+AK A KE T++ + G + +
Sbjct: 425 VAKQALKERKTIRQTVIDRGLIGDR 449
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 138/205 (67%), Gaps = 1/205 (0%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
+ A + TGL ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 244 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 303
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PG+SIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+ P
Sbjct: 304 TGLAEIQLPDLQPGASIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIP 363
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S +L+ + + F +C++G+ AN E++ RL S +VT LN IGY++AA
Sbjct: 364 MMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAA 423
Query: 519 IAKTAHKEGTTLKVAALKLGYLTEE 543
+AK A KE T++ + G + +
Sbjct: 424 VAKQALKERKTIRQTVIDRGLIGDR 448
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 198 bits (503), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 137/205 (66%), Gaps = 1/205 (0%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
+ A + TGL ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 244 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 303
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PG SIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+ P
Sbjct: 304 TGLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIP 363
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S +L+ + + F +C++G+ AN E++ RL S +VT LN IGY++AA
Sbjct: 364 MMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAA 423
Query: 519 IAKTAHKEGTTLKVAALKLGYLTEE 543
+AK A KE T++ + G + +
Sbjct: 424 VAKQALKERKTIRQTVIDRGLIGDR 448
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 143/214 (66%), Gaps = 9/214 (4%)
Query: 343 AKIAEL----TGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGP 397
AK+ E+ TGL ++A + FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 262 AKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGP 321
Query: 398 RCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457
GL E+ LP+ +PGSSIMPGKVNP EA+T VA QV+GN A+ GG++G FELNV+
Sbjct: 322 LTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGNDAAIAFGGASGAFELNVYI 381
Query: 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAA 517
P++ N+L S L+++ + F ++C+ G+VANEE + L S +VT LN IGY++AA
Sbjct: 382 PMMARNLLESFTLLSNVSRLFAERCIDGLVANEERLRELAESSPSIVTPLNSAIGYEEAA 441
Query: 518 KIAKTAHKEGTTLKVAALKLGY----LTEEEFNK 547
K+AK A E T++ + G L+ EE ++
Sbjct: 442 KVAKQALAEKKTIRQTVIDRGLIGDKLSLEELDR 475
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 140/213 (65%)
Query: 345 IAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
+A+ +G P +SA + +A D EVS AL +++ KIAND+R +ASGPR GL E+
Sbjct: 250 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 309
Query: 405 SLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464
LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV +P++ N+
Sbjct: 310 VLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNL 369
Query: 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAH 524
++SI ++ + +FT+ C+ GI ANEE + + +S+ ++TA+NPH+GY+ AAK+A+ A+
Sbjct: 370 IQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAY 429
Query: 525 KEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
G +++ +K G LTEE+ N+ + P +M+ P
Sbjct: 430 LTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 146/215 (67%), Gaps = 9/215 (4%)
Query: 342 AAKIAEL----TGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASG 396
AK+ E+ TGL K+A + FEA AA D LVE SGAL T+A SL KIANDIR++ SG
Sbjct: 245 GAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIANDIRWMGSG 304
Query: 397 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456
P GLGE+ LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+T+GG +G FELNV+
Sbjct: 305 PLTGLGEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAITVGGLSGAFELNVY 364
Query: 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKA 516
P++ N+L S L+A+ + F DKCV G+VANE+++ L S +VT LN IGY++A
Sbjct: 365 IPVMARNLLESFTLLANVSRLFVDKCVDGLVANEDHLRTLAESSPSIVTPLNSAIGYEEA 424
Query: 517 AKIAKTAHKEGTTLKVAALKLGYLTE----EEFNK 547
A +AK A KE T++ + G + + EE +K
Sbjct: 425 AAVAKEALKERKTIRQTVIDRGLIGDKLSIEELDK 459
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 123/195 (63%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
++++++G+ K+ N EA A V SG L +AV L KIAND+R L+SGPR GLGE
Sbjct: 269 ELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 328
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
+ LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F+PLIV N
Sbjct: 329 IRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYN 388
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTA 523
+L S+RL+ + T ++CV GI AN E ES+ L TAL P +GY +AA+IAK A
Sbjct: 389 ILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQA 448
Query: 524 HKEGTTLKVAALKLG 538
G T+ A+ G
Sbjct: 449 LASGQTVMEVAISKG 463
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 123/195 (63%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
++++++G+ K+ N EA A V SG L +AV L KIAND+R L+SGPR GLGE
Sbjct: 252 ELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 311
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
+ LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F+PLIV N
Sbjct: 312 IRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYN 371
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTA 523
+L S+RL+ + T ++CV GI AN E ES+ L TAL P +GY +AA+IAK A
Sbjct: 372 ILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQA 431
Query: 524 HKEGTTLKVAALKLG 538
G T+ A+ G
Sbjct: 432 LASGQTVMEVAISKG 446
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 125/214 (58%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
K+AE+TG P A + EA + A V V GAL +AV + KI ND+R L+SGPR GL E
Sbjct: 252 KLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNE 311
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
++LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV +P+I
Sbjct: 312 INLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQA 371
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTA 523
+ S+ ++ ++ +KC++GI AN+E ++ S+ +VT LNP IG+ + K
Sbjct: 372 MFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKIC 431
Query: 524 HKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
+ G +++ L+ G LTE E + ++++ P
Sbjct: 432 AETGKSVREVVLERGLLTEAELDDIFSVQNLMHP 465
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 96/149 (64%)
Query: 345 IAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
+A+ +G P +SA + +A D EVS AL +++ KIAND+R +ASGPR GL E+
Sbjct: 250 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 309
Query: 405 SLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464
LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV +P++ N+
Sbjct: 310 VLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNL 369
Query: 465 LRSIRLIADSATAFTDKCVSGIVANEENI 493
++SI ++ + +FT+ C+ GI ANEE +
Sbjct: 370 IQSISIMTNVFKSFTENCLKGIKANEERM 398
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEN----DGVHYRITESNRLHINQANATDSGEY 198
+G +++ CD DG+P P + W KDG+ IEN D H +S+ L I + D EY
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269
Query: 199 RCVASNSYTSDENAVTIRV 217
C+A N + ++ ++V
Sbjct: 270 VCIAENKAGEQDASIHLKV 288
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQANATDSGE 197
Q F G D I CDV P + W G+ VI V + + +N L I TD G
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 169
Query: 198 YRC 200
YRC
Sbjct: 170 YRC 172
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
T +Q+ G D+ + C G P P + WYK G + +D + + L I + D
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE-NFNKALRITNVSEED 286
Query: 195 SGEYRCVASNSYTSDENAVTIRVEG 219
SGEY C+ASN S + +++RV+
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVKA 311
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL---HINQANATDSGEYRC 200
G+D+ + C++ G P QV W+KD + + + G Y+I N L HI ++ D GEY+C
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRS-GKKYKIMSENFLTSIHILNVDSADIGEYQC 457
Query: 201 VASNSYTSDE--NAVTIRVEGIFI 222
ASN SD ++T++ F+
Sbjct: 458 KASNDVGSDTCVGSITLKAPPRFV 481
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--RLHINQANAT 193
LE +G I++ C VDG P ++ WYK+ + + + ++N L IN+ + +
Sbjct: 12 LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHS 71
Query: 194 DSGEYRCVASNS 205
D GEY C A NS
Sbjct: 72 DVGEYTCKAENS 83
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDG------VHYRITESNRLHINQANATDSG 196
+G ++ C ++G QV WYKDG+++++D +H T L I Q + + G
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVAT----LQILQTDQSHVG 170
Query: 197 EYRCVASN 204
+Y C ASN
Sbjct: 171 QYNCSASN 178
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESN 183
L PV V++ L G + C V G ++ W KD + I G +Y++T +
Sbjct: 202 LKPVSVDLAL-------GESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 253
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + D+G+Y C ASN D + + V+
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 151 CDVDGYPIPQVFWYKD-GQVIENDGVHYRITES-NRLHINQANATDSGEYRCVASNSYTS 208
C + G P +V WYKD ++ E+ ES L + + DSG+Y C A N+ S
Sbjct: 313 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 372
Query: 209 DENAVTIRVE 218
++ +++V+
Sbjct: 373 ASSSTSLKVK 382
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKD-GQVI-ENDGVHYRITES-NRLHINQANATDSGEYR 199
VG ++ + ++G V W+KD G+++ E+D + +E+ L ++A ++G+Y
Sbjct: 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYT 550
Query: 200 CVASNSYTSDENAVTIRV 217
C N + E T+ V
Sbjct: 551 CQIKNEAGTQECFATLSV 568
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL---HINQANATDSGEYRC 200
G+D+ + C++ G P QV W+KD + + + G Y+I N L HI ++ D GEY+C
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRS-GKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Query: 201 VASN---SYT 207
ASN SYT
Sbjct: 266 KASNDVGSYT 275
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESN 183
L PV V++ L G + C V G ++ W KD + I G +Y++T +
Sbjct: 10 LKPVSVDLAL-------GESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + D+G+Y C ASN D + + V+
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 151 CDVDGYPIPQVFWYKD-GQVIENDGVHYRITES-NRLHINQANATDSGEYRCVASNSYTS 208
C + G P +V WYKD ++ E+ ES L + + DSG+Y C A N+ S
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 209 DENAVTIRVE 218
++ +++V+
Sbjct: 181 ASSSTSLKVK 190
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL---HINQANATDSGEYRC 200
G+D+ + C++ G P QV W+KD + + + G Y+I N L HI ++ D GEY+C
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRS-GKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Query: 201 VASN---SYT 207
ASN SYT
Sbjct: 266 KASNDVGSYT 275
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESN 183
L PV V++ L G + C V G ++ W KD + I G +Y++T +
Sbjct: 10 LKPVSVDLAL-------GESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + D+G+Y C ASN D + + V+
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 151 CDVDGYPIPQVFWYKD-GQVIENDGVHYRITES-NRLHINQANATDSGEYRCVASNSYTS 208
C + G P +V WYKD ++ E+ ES L + + DSG+Y C A N+ S
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 209 DENAVTIRVE 218
++ +++V+
Sbjct: 181 ASSSTSLKVK 190
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANATDSGEYRCVAS 203
+++ CD DG+P P + W KDG+ IE + + + + + L I + + +D EY C+A
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAE 90
Query: 204 NSYTSDENAVTIRV 217
N + + ++V
Sbjct: 91 NKAGEQDATIHLKV 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LHINQANATDSGEYRCV 201
G CD DG P+P V W + GQV+ H T + I+ A+D G Y V
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 82
Query: 202 ASNSYTSDENAVTIRVE 218
NS E T+ ++
Sbjct: 83 VENSEGKQEAEFTLTIQ 99
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LHINQANATDSGEYRCV 201
G CD DG P+P V W + GQV+ H T + I+ A+D G Y V
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 202 ASNSYTSDENAVTIRVE 218
NS E T+ ++
Sbjct: 89 VENSEGKQEAEFTLTIQ 105
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNR-LHINQANAT 193
LE Q +G I + C G P PQ+ W+KD + ++E+ G+ + + NR L I +
Sbjct: 673 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKE 730
Query: 194 DSGEYRCVA 202
D G Y C A
Sbjct: 731 DEGLYTCQA 739
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
VG + IP GYP P++ WYK+G +E++ + I + L I + + D+G Y +
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 203 SNSYTSDENA 212
+N + ++ +
Sbjct: 401 TNPISKEKQS 410
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
N+N LTI+RV E G YTCQA + LG A
Sbjct: 719 NRN-LTIRRVRKEDEGLYTCQACSVLGCA 746
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNR-LHINQANAT 193
LE Q +G I + C G P PQ+ W+KD + ++E+ G+ + + NR L I +
Sbjct: 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKE 74
Query: 194 DSGEYRCVA 202
D G Y C A
Sbjct: 75 DEGLYTCQA 83
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
N+N LTI+RV E G YTCQA + LG A
Sbjct: 63 NRN-LTIRRVRKEDEGLYTCQACSVLGCA 90
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 149 IPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY- 206
+PC G P P V W K D + EN + + ES L I+ D+G+YRCVA NS
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIA--VLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 207 TSDENAVTIRVE 218
T+ V + VE
Sbjct: 178 TAYSKLVKLEVE 189
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASN 204
C V+ YP P++ W ++ +I+ Y I E+ + L I +D G Y C A+N
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN 83
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MIQVRSENYELNKN--MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
+I++ Y + +N +LTI VE G Y C A NG+G AV LQ K+ P
Sbjct: 47 LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP 106
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SNRLHINQANATDSGEYRCVASNS--- 205
C G P P++ W+KD ++ + RI + S L I + TD G+Y CVA+NS
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Query: 206 -YTSDENAVTIRVEGI 220
Y+S N + +RV+ +
Sbjct: 190 RYSSPAN-LYVRVQNV 204
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFW----------YKDGQVIENDGVHY 177
VP + + + F GSD + C DG+P PQV W YKD + +N V
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV-- 770
Query: 178 RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
E LH++ T+ G Y C A N S +AV +
Sbjct: 771 ---EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P+ I TQ G C G PI V W KDG+ I + + L I
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIE 394
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCR 227
D G Y+C N S E + +++ G F P R
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIR 433
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 120 ETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI 179
E + GG P + + + G + + C G P P++ W DG+ I N+ Y++
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND-RYQV 478
Query: 180 TE--------SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
+ + L+I +A D G Y+C+A + E++ + V G+
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL 527
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 111 FGARSGYLKETQNGGYLVPVKVNIT-LETQVFGVGSDISIPCDVDGYPIPQVFWYK---- 165
A G L T+ VP V++ + + + S +++ C GYP+P WYK
Sbjct: 229 LSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEG 288
Query: 166 ---DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
V+ ND V S L I A DSG+Y CV +NS
Sbjct: 289 TTRKQAVVLNDRVK---QVSGTLIIKDAVVEDSGKYLCVVNNS 328
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
+E + G + + C V GYPI + W +D + + + + N +D
Sbjct: 533 MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ 592
Query: 196 GEYRCVASN 204
Y CVA N
Sbjct: 593 ATYTCVAKN 601
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+S+N + + L + ++ G Y C+A NG+G +S + +
Sbjct: 764 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 153 VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---INQANATDSGEYRCVASN 204
V G P P V WY +G+ +++D +H I LH A+D+G Y CVA N
Sbjct: 29 VSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN 83
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 121 TQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHY 177
TQ + P++ + LE GS + + G+P+P+V W++DGQVI GV
Sbjct: 3 TQAPTFTQPLQSVVVLE------GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQI 56
Query: 178 RITESN-RLHINQANATDSGEYRCVASN 204
++ +L I +SG Y A+N
Sbjct: 57 SFSDGRAKLTIPAVTKANSGRYSLKATN 84
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---INQANA 192
L++ GS + + V G P P V +Y+DG I++ + ++I++ L+ I +A
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-LDFQISQEGDLYSLLIAEAYP 168
Query: 193 TDSGEYRCVASNS 205
DSG Y A+NS
Sbjct: 169 EDSGTYSVNATNS 181
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 121 TQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHY 177
TQ + P++ + LE GS + + G+P+P+V W++DGQVI GV
Sbjct: 3 TQAPTFTQPLQSVVVLE------GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQI 56
Query: 178 RITESN-RLHINQANATDSGEYRCVASN 204
++ +L I +SG Y A+N
Sbjct: 57 SFSDGRAKLTIPAVTKANSGRYSLKATN 84
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---INQANA 192
L++ GS + + V G P P V +Y+DG I++ + ++I++ L+ I +A
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-LDFQISQEGDLYSLLIAEAYP 168
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
DSG Y A+NS + + V+G
Sbjct: 169 EDSGTYSVNATNSVGRATSTAELLVQG 195
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYR 199
G ++ C V G P P+++W+KDG+ I HY I + LH + D G Y
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 81
Query: 200 CVASN 204
+A+N
Sbjct: 82 IMAAN 86
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL-HINQANATDS 195
+T + VG +++ G P PQV W K G ++ VH R ++ + + + QA +DS
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDS 91
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
GEY D + IRV
Sbjct: 92 GEYELSVQIENMKDTATIRIRV 113
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
Q V + C G P+P + W KDG ++ + E+ L I A D+G Y
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRY 77
Query: 199 RCVASNSYTSDENAVTIRVE--GIFIHP 224
C+AS + I V+ G+ + P
Sbjct: 78 TCIASTPSGEATWSAYIEVQEFGVPVQP 105
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYR 199
G ++ C V G P P+++W+KDG+ I HY I + LH + D G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82
Query: 200 CVASN 204
+A+N
Sbjct: 83 IMAAN 87
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SNRLHINQANATDSGEYRCVASNS 205
C G P P++ W+KD ++ + RI + S L I + TD G+Y CVASNS
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNS 186
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SNRLHINQANATDSGEYRCVASNS 205
C G P P++ W+KD ++ + RI + S L I + TD G+Y CVA+NS
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SNRLHINQANATDSGEYRCVASNS 205
C G P P++ W+KD ++ + RI + S L I + TD G+Y CVA+NS
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G +++ C G P P + W+++G++IE + + + L + +D G Y C A+
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 78
Query: 204 NSYTSDENAVTIRVEGIFIHP 224
N DE ++V F+ P
Sbjct: 79 NKAGEDEKQAFLQV---FVQP 96
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--------------DGQVIENDGVHYRI 179
I L+ + +++ CD +G PIP++ W + DG+ IE G H
Sbjct: 99 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR-IEVKGQHG-- 155
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
S+ LHI +DSG Y C A++ + ++ + +E
Sbjct: 156 --SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SNRLHINQ 189
+++ + +V G ++ C G P P++ W+KD ++ + RI + S L I
Sbjct: 112 IDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIES 171
Query: 190 ANATDSGEYRCVASNS 205
+ +D G+Y CVA+NS
Sbjct: 172 SEESDQGKYECVATNS 187
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--------QVIENDGVHYRIT 180
PV V + E Q G S C G P P++ W K G +VIE D +
Sbjct: 8 PVFVKVP-EDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 66
Query: 181 ESNRLHINQANATDSGEYRCVASNS 205
L + + A Y C A+NS
Sbjct: 67 RIQPLRVQRDEAI----YECTATNS 87
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGE 197
T+V VG + + C G P P ++W K+ ++ Y + + L I + D G+
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF-LQIENSREEDQGK 177
Query: 198 YRCVASNSYTSDENAVT 214
Y CVA NS ++ + T
Sbjct: 178 YECVAENSMGTEHSKAT 194
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES----NRLHINQANA 192
+ Q VG S C G P P + W K+G+ + Y + E + L I A
Sbjct: 14 QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRA 73
Query: 193 -TDSGEYRCVASNS 205
D Y CVA N
Sbjct: 74 GRDDAPYECVAENG 87
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 16 LTIKRVEPERLG----AYTCQAYNGLGRAVSWTVTLQALPSEK 54
++I R+EP R G Y C A NG+G AVS TL +K
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 105
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGE 197
T+V VG + + C G P P ++W K+ ++ Y + + L I + D G+
Sbjct: 121 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-FLQIENSREEDQGK 179
Query: 198 YRCVASNSYTSDENAVT 214
Y CVA NS ++ + T
Sbjct: 180 YECVAENSMGTEHSKAT 196
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES----NRLHINQANA 192
+ Q VG S C G P P + W K+G+ + Y + E + L I A
Sbjct: 16 QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRA 75
Query: 193 -TDSGEYRCVASN 204
D Y CVA N
Sbjct: 76 GRDDAPYECVAEN 88
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 LTIKRVEPERLG----AYTCQAYNGLGRAVSWTVTLQALPSEKV 55
++I R+EP R G Y C A NG+G AVS TL +K
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT 108
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYRC 200
S+ ++ C V G+P P V WY+ G+ I DG+ YRI E ++L I D+ Y+
Sbjct: 20 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79
Query: 201 VASNSYTSDENAVTIRVE 218
A+N S ++ VE
Sbjct: 80 RATNQGGSVSGTASLEVE 97
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 128 VPVKVNITLETQVFGV-----GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--- 179
VP K+++ + G G +SI G P P + W K +I+N+G HY++
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVT 156
Query: 180 -TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ ++ + N D+G Y A N + D+ V + V
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYRC 200
S+ ++ C V G+P P V WY+ G+ I DG+ YRI E ++L I D+ Y+
Sbjct: 18 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 77
Query: 201 VASNSYTSDENAVTIRVE 218
A+N S ++ VE
Sbjct: 78 RATNQGGSVSGTASLEVE 95
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 128 VPVKVNITLETQVFGV-----GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--- 179
VP K+++ + G G +SI G P P + W K +I+N+G HY++
Sbjct: 96 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVT 154
Query: 180 -TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ ++ + N D+G Y A N + D+ V + V
Sbjct: 155 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 193
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G D + C V GYP P W + +VI+ Y + + L I+ DSG Y CV +
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 204 --NSYTSDENAVTIRVEGIFI-HPS 225
N S +T+ V F+ HPS
Sbjct: 296 YKNENISASAELTVLVPPWFLNHPS 320
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204
DI C V G P+P V W K+G VI +D +++I + L I +D G Y+CVA N
Sbjct: 329 DIEFECAVSGKPVPTVNWMKNGDVVIPSD--YFQIVGGSNLRILGVVKSDEGFYQCVAEN 386
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ESNRLH 186
P++ E+ +G + + C+V G P+P + W K+ Q + R+ S L
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 187 INQANATDSGEYRCVASN-SYTSDENAVTIRV 217
I++ DSG YRC A N + T N +R+
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---INQANATDSGEYRCVASN 204
C V G P P + W DG+ + D H + N +H I + D+G Y C+A+N
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYRC 200
S+ ++ C V G+P P V WY+ G+ I DG+ YRI E ++L I D+ Y+
Sbjct: 20 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79
Query: 201 VASNSYTSDENAVTIRVE 218
A+N S ++ VE
Sbjct: 80 RATNQGGSVSGTASLEVE 97
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 128 VPVKVNITLETQVFGV-----GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--- 179
VP K+++ + G G +SI G P P + W K +I+N+G HY++
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVT 156
Query: 180 -TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
+ ++ + N D+G Y A N + D+ V + V +
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G +++ C G P P + W+++G++IE + + + L + +D G Y C A+
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172
Query: 204 NSYTSDENAVTIRV 217
N DE ++V
Sbjct: 173 NKAGEDEKQAFLQV 186
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFW-YKDGQVIENDGVHYRITESNRLHINQANATDSGE 197
Q F G D + C V P P V W Y + +V + + +N L I N +D G
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 71
Query: 198 YRC 200
YRC
Sbjct: 72 YRC 74
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESNR--- 184
PVK+ ++ G + + C V+G P + W KDG V++N D ++ ++E +
Sbjct: 9 PVKLTVSQ-------GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 185 LHINQANATDSGEYRC-VASNSYTSDENAVTIRVEGI-FIHPSCRDLPLFAN 234
L + +D+G Y C V T V + VEG+ F +DL + N
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPN 113
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G +++ C G P P + W+++G++IE + + + L + +D G Y C A+
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 268
Query: 204 NSYTSDENAVTIRV 217
N DE ++V
Sbjct: 269 NKAGEDEKQAFLQV 282
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQ--------VIENDGVHYRIT 180
++V I+L VG C G P + WY G+ V++ +GV R+T
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
I AN D+G YRC A+++ + A +
Sbjct: 64 ------IYNANIEDAGIYRCQATDAKGQTQEATVV 92
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFW-YKDGQVIENDGVHYRITESNRLHINQANATDSGE 197
Q F G D + C V P P V W Y + +V + + +N L I N +D G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 198 YRC 200
YRC
Sbjct: 168 YRC 170
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESN-RLHINQANATDSGEYR 199
GS C V+GYP P+V W+KD ++ + H++I E N L I++ D +Y
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 200 CVASNS 205
C A NS
Sbjct: 115 CKAVNS 120
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 119 KETQNGGYLV---PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV 175
++T G ++ P +++ +T+ +GSD+ C G P P V W +DGQ + +
Sbjct: 282 RDTYQGRIIIHAQPDWLDVITDTEA-DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN- 339
Query: 176 HYRITES-NRLHINQANATDSGEYRCVASNSY 206
RI S L ++ DSG Y+CVA N +
Sbjct: 340 --RIEVSGGELRFSKLVLEDSGMYQCVAENKH 369
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL 185
Y +K +T G +++ C G P+PQ+ W K ++ ++ L
Sbjct: 205 YAPSIKAKFPADTYAL-TGQMVTLECFAFGNPVPQIKWRK----LDGSQTSKWLSSEPLL 259
Query: 186 HINQANATDSGEYRCVASN 204
HI + D G Y C A N
Sbjct: 260 HIQNVDFEDEGTYECEAEN 278
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+++ C P W +G ++ YR+ + + N A D+G Y+CVA+N+
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 24/170 (14%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
+A DA+ E L V+ SL K+A DI + + LGE++ P + SS MP K N
Sbjct: 226 SARDAVAETVQFLALVSGSLGKLAMDISIMMT---TELGEVAEPFVRHRGASSTMPQKQN 282
Query: 422 PTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL------------IVSNVLRSIR 469
P CE L + A+++ NH + FE P + S +L
Sbjct: 283 PVSCE-LILAGARIVRNHATSMLDAMIHDFE-RATGPWHLEWSAVPEGFAVASGILYQAE 340
Query: 470 LIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+ F D+ + + + ++ E++M+ AL PH G +A I
Sbjct: 341 FMLGGLQVFPDRMRENL---DHSRGLIVAEAVMM--ALAPHTGRKEAHDI 385
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI---TESN-RLHINQANATDSGEYR 199
GS C V+GYP P+V W+KD ++ + H++I E N L I++ D +Y
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 200 CVASNS 205
C A NS
Sbjct: 115 CKAVNS 120
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SNRLHINQANATDSGEYRCVASNS 205
C G P P++ W+KD ++ + RI + S L I + +D G+Y CVA+NS
Sbjct: 130 CAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNS 186
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--------QVIENDGVHYRIT 180
PV + + E Q G S C G P P++ W K G +VIE D +
Sbjct: 7 PVFIKVP-EDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 181 ESNRLHINQANATDSGEYRCVASNS 205
L + + D Y C A+NS
Sbjct: 66 RIQPLRVQR----DEAIYECTATNS 86
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRI----TES-NRLHINQANATDSGEYRCVASNS 205
C G P P++ W+KD ++ + RI +ES L I Q+ +D G+Y CVA+NS
Sbjct: 130 CAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNS 189
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEN---DGVHYRITESNRLHINQANA-TDSGEYR 199
G S C G P P++ W K G+ + N + + + + L I D Y
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 200 CVASNS 205
CVASN+
Sbjct: 81 CVASNN 86
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
VG + IP GYP P++ WYK+G +E++ + I + L I + + D+G Y +
Sbjct: 214 VGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVIL 270
Query: 203 SNSYTSDENA 212
+N + ++ +
Sbjct: 271 TNPISKEKQS 280
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 155 GYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEYRCVASNSYTSDEN 211
G P P W KDG+ I G Y+++E L I++ + +DSG Y C NS S +
Sbjct: 32 GEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Query: 212 AVTIRVEGI 220
+ + ++ I
Sbjct: 91 SCKLTIKAI 99
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-ESN--RLHINQANATDSGEYRC 200
G D + C V G P+P++ W +GQ I+ + R T E+ LHI A D G Y C
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAGVAELHIQDALPEDHGTYTC 81
Query: 201 VASNS 205
+A N+
Sbjct: 82 LAENA 86
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRC 200
G +++ C+V G P P+V W K+ + + +D + + + IN + DSG+Y
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL 296
Query: 201 VASNSYTSDENAVTIRV 217
V N Y S+ + T+ V
Sbjct: 297 VVKNKYGSETSDFTVSV 313
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQANATDSGE 197
Q F G D I CDV P + W G+ VI V + + +N L I TD G
Sbjct: 11 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 70
Query: 198 YRC 200
YRC
Sbjct: 71 YRC 73
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN- 183
G P ++L Q G D+ + V G P P V W ++ Q + D R E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD--QRRFAEEAE 58
Query: 184 ----RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
RL I A D+G Y C A N Y + + + V G
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 351 LPFKSAP--NKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPE 408
L FK AP N +A+A+ D +EV ALN + L ++A ++ L S G E+ P+
Sbjct: 219 LGFK-APMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEEL-ILYSTEEFGFVEV--PD 274
Query: 409 N-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVT 443
GSSIMP K NP E + A +V+G V ++
Sbjct: 275 AFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLS 310
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
Q V + C G P+P + W K+G I E L I +D+G Y
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTY 77
Query: 199 RCVASNS 205
CVA++S
Sbjct: 78 TCVATSS 84
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 15/66 (22%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQ--------VIENDGVHYRITESNRLHINQANATDSGEY 198
+ + C+VD P V WYKDGQ V+EN+G H RL + +D GE+
Sbjct: 24 VMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPH------RRLVLPATQPSDGGEF 76
Query: 199 RCVASN 204
+CVA +
Sbjct: 77 QCVAGD 82
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--------------DGQVIENDGVHYRI 179
I L+ + +++ CD +G PIP++ W + DG+ IE G H
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR-IEVKGQH--- 60
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
S+ LHI +DSG Y C A++ + ++ + +E
Sbjct: 61 -GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR---LHINQANATDSGEYR 199
G+ I+I CDV P + W +D V+ + + + + R L I + D G Y
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 200 CVASN 204
C A+N
Sbjct: 175 CTATN 179
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--------------DGQVIENDGVHYRI 179
I L+ + +++ CD +G PIP++ W + DG+ IE G H
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR-IEVKGQH--- 60
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
S+ LHI +DSG Y C A++ + ++ + +E
Sbjct: 61 -GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR---LHINQANATDSGEYR 199
G+ I+I CDV P + W +D V+ + + + + R L I + D G Y
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 200 CVASN 204
C A+N
Sbjct: 175 CTATN 179
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANAT-DSGEYRCVASN 204
+ + C+V G P P + W +G ++ G+ +R + L IN N T D+G Y+C+A+N
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVD-IGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATN 83
Query: 205 SY 206
S+
Sbjct: 84 SF 85
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQA 190
+++ +E VF C +G P P W K+G ++ D + E L+I
Sbjct: 304 IHVAMEESVF-------WECKANGRPKPTYRWLKNGDPLLTRDRIQ---IEQGTLNITIV 353
Query: 191 NATDSGEYRCVASNSY 206
N +D+G Y+CVA N +
Sbjct: 354 NLSDAGMYQCVAENKH 369
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
G+ + + C G P+P + W + DG+ I ++ + L I D+G Y CVA
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIARKARRHK--SNGILEIPNFQQEDAGSYECVA 276
Query: 203 SNS 205
NS
Sbjct: 277 ENS 279
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANAT-DSGEYRCVASN 204
+ + C+V G P P + W +G ++ G+ +R + L IN N T D+G Y+C+A+N
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVD-IGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATN 84
Query: 205 SY 206
S+
Sbjct: 85 SF 86
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQA 190
+++ +E VF C +G P P W K+G ++ D + E L+I
Sbjct: 305 IHVAMEESVF-------WECKANGRPKPTYRWLKNGDPLLTRDRIQ---IEQGTLNITIV 354
Query: 191 NATDSGEYRCVASNSY 206
N +D+G Y+CVA N +
Sbjct: 355 NLSDAGMYQCVAENKH 370
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
G+ + + C G P+P + W + DG+ I ++ + L I D+G Y CVA
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKARRHK--SNGILEIPNFQQEDAGSYECVA 277
Query: 203 SNS 205
NS
Sbjct: 278 ENS 280
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH----YRITESNRLHINQANATDSGEYR 199
G+ ++I C+V YP + W++DGQ++ + Y ++ L + + D G Y
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
Query: 200 CVASN 204
C A N
Sbjct: 93 CTAVN 97
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 370 VEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 427
+EV L ++ S+ KI DIR LA+ L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSEC 306
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIV 487
+A +M + S FE + L L AD+ G+V
Sbjct: 307 CCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLV 366
Query: 488 ANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAA 534
+ I R + + L + N + KA + H++ L A
Sbjct: 367 VYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQA 413
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQANATDSGE 197
Q F G D I CDV P + W G+ VI V + + +N L I TD G
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 169
Query: 198 YRC 200
YRC
Sbjct: 170 YRC 172
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G D++IPC V G P P V W + + + G +T+S L I D G Y C A+
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPLS--GGRATVTDSG-LVIKGVKNGDKGYYGCRAT 380
Query: 204 NSY 206
N +
Sbjct: 381 NEH 383
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 336 LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLAS 395
+L T+ K A++ GLP + + + D + ++ +A ++ ++A +IR L
Sbjct: 189 ILTTEDEKKAADILGLPVEEVSTQ---VIPRDRIAKLISIHGLIASAIERLAVEIRHLHR 245
Query: 396 GPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTI 444
+ E + + GSS MP K NP E LT + A+++ +HV++ +
Sbjct: 246 SDVFEVYE-GFSKGQKGSSTMPHKKNPISTENLTGM-ARMLRSHVSIAL 292
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P+ I TQ G C G PI V W KDG+ I + + L I
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------ESVLRIE 358
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
D G Y+C N S E + +++
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-------DGQVIENDGVHYRITESNRLHINQANATDS 195
V IS+ C G+P P WYK V+ ND V S L I A DS
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDS 282
Query: 196 GEYRCVASNS 205
G+Y CV +NS
Sbjct: 283 GKYLCVVNNS 292
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P+ I TQ G C G PI V W KDG+ I + + L I
Sbjct: 313 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------ESVLRIE 364
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
D G Y+C N S E + +++
Sbjct: 365 SVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-------DGQVIENDGVHYRITESNRLHINQANATDS 195
V IS+ C G+P P WYK V+ ND V S L I A DS
Sbjct: 232 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDS 288
Query: 196 GEYRCVASNS 205
G+Y CV +NS
Sbjct: 289 GKYLCVVNNS 298
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 370 VEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 427
+EV L ++ S+ KI DIR LA+ L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSER 306
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIV 487
+A +M + S FE + L L AD+ G+V
Sbjct: 307 CCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLV 366
Query: 488 ANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAA 534
+ I R + + L + N + KA + H++ L A
Sbjct: 367 VYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQA 413
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 370 VEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 427
+EV L ++ S+ KI DIR LA+ L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSER 325
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIV 487
+A +M + S FE + L L AD+ G+V
Sbjct: 326 CCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLV 385
Query: 488 ANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAA 534
+ I R + + L + N + KA + H++ L A
Sbjct: 386 VYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQA 432
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 370 VEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 427
+EV L ++ S+ KI DIR LA+ L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSER 325
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIV 487
+A +M + S FE + L L AD+ G+V
Sbjct: 326 CCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLV 385
Query: 488 ANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAA 534
+ I R + + L + N + KA + H++ L A
Sbjct: 386 VYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQA 432
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 154 DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA---------NATDSGEYRCVASN 204
DG P + W+KDG V+ + R ++ +N +A+D+GEY C A N
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 205 SYTSDENAVTIRVEGI 220
Y + + +R+E +
Sbjct: 193 GYGTPMTSNAVRMEAV 208
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYK----DG-----------QVIENDGVHYRITESN 183
+ +GS++ C V P P + W K +G Q+++ GV+ E
Sbjct: 126 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 185
Query: 184 RLHINQANATDSGEYRCVASNS 205
LH+ + D+GEY C+A NS
Sbjct: 186 VLHLRNVSFEDAGEYTCLAGNS 207
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHINQANATDSGEYRCVA 202
+ C G P P + W K+G+ + D G R + + ++ +D G Y C+
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIV 93
Query: 203 SNSYTS 208
N Y S
Sbjct: 94 ENEYGS 99
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P+ I TQ G C G PI V W KDG+ I + + L I
Sbjct: 310 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIE 361
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
D G Y+C N S E + +++
Sbjct: 362 SVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 111 FGARSGYLKETQNGGYLVPVKVNITLETQVFGV--GSDISIPCDVDGYPIPQVFWYK--- 165
A G L T+ G + P KVN + Q V S S+ C YP P WYK
Sbjct: 196 LSATKGRLVITEPVGSVRP-KVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIE 254
Query: 166 ----DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
V+ ND V S L I A DSG+Y CV +NS
Sbjct: 255 GTTRKQAVVLNDRVK---QVSGTLIIKDAVVEDSGKYLCVVNNS 295
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYK----DG-----------QVIENDGVHYRITESN 183
+ +GS++ C V P P + W K +G Q+++ GV+ E
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 184 RLHINQANATDSGEYRCVASNS 205
LH+ + D+GEY C+A NS
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNS 206
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHINQANATDSGEYRCVA 202
+ C G P P + W K+G+ + D G R + + ++ +D G Y C+
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIV 92
Query: 203 SNSYTS 208
N Y S
Sbjct: 93 ENEYGS 98
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYK----DG-----------QVIENDGVHYRITESN 183
+ +GS++ C V P P + W K +G Q+++ GV+ E
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 184 RLHINQANATDSGEYRCVASNS 205
LH+ + D+GEY C+A NS
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNS 206
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHINQANATDSGEYRCVA 202
+ C G P P + W K+G+ + D G R + + ++ +D G Y C+
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIV 92
Query: 203 SNSYTS 208
N Y S
Sbjct: 93 ENEYGS 98
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDG-----QVIENDGVHYRITESNRLHINQAN---ATDS 195
G D + C GYP P+ W K ++ + G + I + N +N N D
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDP 166
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
GEY C A+NS S + +RV
Sbjct: 167 GEYECNATNSIGSASVSTVLRV 188
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNRLH---INQANATDSGEY 198
+G + C + G P+P + WY+ G ++I++ Y+++ R H + D G Y
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR--KYKMSSDGRTHTLTVMTEEQEDEGVY 78
Query: 199 RCVASN 204
C+A+N
Sbjct: 79 TCIATN 84
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRC 200
G +++ C+V G P P+V W K+ + + + + + IN + DSG+Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 201 VASNSYTSDENAVTIRV 217
V N Y S+ + T+ V
Sbjct: 192 VVKNKYGSETSDFTVSV 208
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 155 GYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYTSDENAV 213
G+P P + W KDG + D RIT +L I +D+G+Y CV +N E+ V
Sbjct: 138 GHPEPTISWKKDGSPL--DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEV 195
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHI-----NQANATD 194
G ++ C +G P P + WYK G+ +E D H + S L + + D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 195 SGEYRCVASN 204
G Y CVA N
Sbjct: 84 EGVYVCVARN 93
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 17/87 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEN-----------DGVH----YRITESNRLHI 187
VG + + C+ G P+P++ W+ +GQ + D VH Y ++ + I
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 188 NQANATDSGEYRCVASNSYTSDENAVT 214
+ D+G Y C ASN D N +T
Sbjct: 95 DTLVEEDTGTYECRASND--PDRNHLT 119
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 17/87 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEN-----------DGVH----YRITESNRLHI 187
VG + + C+ G P+P++ W+ +GQ + D VH Y ++ + I
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 188 NQANATDSGEYRCVASNSYTSDENAVT 214
+ D+G Y C ASN D N +T
Sbjct: 95 DTLVEEDTGTYECRASND--PDRNHLT 119
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 151 CDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRL-----HINQANATDSGEYRCVASN 204
C V+G P P + W+KDG+ V N+ +R+ + + D GEY CVA N
Sbjct: 31 CKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKN 90
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 155 GYPIPQVFWYKDGQVIEN-------DGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207
G P P + W KDG +++ RI + L I+ D G Y+C+A N
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 208 SDENA 212
+ E++
Sbjct: 195 TRESS 199
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 151 CDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRL-----HINQANATDSGEYRCVASN 204
C V+G P P + W+KDG+ V N+ +R+ + + D GEY CVA N
Sbjct: 31 CKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKN 90
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 155 GYPIPQVFWYKDGQVIEN-------DGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207
G P P + W KDG +++ RI + L I+ D G Y+C+A N
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 208 SDENA 212
+ E++
Sbjct: 195 TRESS 199
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
V++ + E G +++ C+V P PQ+ W K DGV + S L + +
Sbjct: 4 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-------DGVPLPLPPSPVLILPE 56
Query: 190 ANATDSGEYRCVASNSY--TSDENAVTIRV 217
D G Y CVA++S + AV+I +
Sbjct: 57 IGPQDQGTYSCVATHSSHGPQESRAVSISI 86
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
V++ + E G +++ C+V P PQ+ W K DGV + S L + +
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-------DGVPLPLPPSPVLILPE 63
Query: 190 ANATDSGEYRCVASNSY--TSDENAVTIRV 217
D G Y CVA++S + AV+I +
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVSISI 93
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCV 201
+GS++ C G P P V W ++G+ + + R+ + L ++ + DSG Y+CV
Sbjct: 307 IGSNLRWGCAAAGKPRPTVRWLRNGEPLASQN---RVEVLAGDLRFSKLSLEDSGMYQCV 363
Query: 202 ASNS----YTSDENAV 213
A N Y S E AV
Sbjct: 364 AENKHGTIYASAELAV 379
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHIN 188
+K ET VG +++ C G P+P++ W K DG + T L I
Sbjct: 208 IKARFPAETYAL-VGQQVTLECFAFGNPVPRIKWRKVDGSLSPQ-----WTTAEPTLQIP 261
Query: 189 QANATDSGEYRCVASNSYTSD 209
+ D G Y C A NS D
Sbjct: 262 SVSFEDEGTYECEAENSKGRD 282
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 144 GSDISIPCDVDG-YPIPQVFWYKDG--QVIENDGVHYRITESNRLHINQANATDSGEYRC 200
G + +PC+ YP W + I DG H+ + L+I + NA+D G Y C
Sbjct: 115 GWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSC 174
Query: 201 VASN 204
+A++
Sbjct: 175 LATS 178
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNRLHINQANATDSGEYRCVASN 204
+ + C P W +G ++ G +++ N + +N A D+G Y+C+ASN
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASN 82
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHI-----NQANATD 194
G ++ C +G P P + WYK G+ +E D H + S L + + D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 195 SGEYRCVASN 204
G Y CVA N
Sbjct: 84 EGVYVCVARN 93
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 347 ELTG-LPFKSAP-NKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
+L G L F SA N ++++ D ++E+ A V L + A D+ F +G G EL
Sbjct: 211 QLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTG-EAGFVEL 269
Query: 405 SLPENEPGSSIMPGKVNPTQCEALTMVAAQVMG 437
S GSS+MP K NP E + +V G
Sbjct: 270 S-DRVTSGSSLMPQKKNPDALELIRGKCGRVQG 301
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LHINQANATDSGEYR 199
G G + C V P V W+KD + ++ + + N L IN+ D GEY
Sbjct: 389 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 448
Query: 200 CVASNSYTSDENAVTIRV 217
A NSY + E V + V
Sbjct: 449 VRAKNSYGTKEEIVFLNV 466
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LHINQANATDSGEYR 199
G G + C V P V W+KD + ++ + + N L IN+ D GEY
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 200 CVASNSYTSDENAVTIRV 217
A NSY + E V + V
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQC 425
D LVE + L VA SL K DI L + E S P + GSS MP K NP
Sbjct: 230 RDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAP-GKGGSSTMPHKRNPVGA 288
Query: 426 EALTMVAAQVMG 437
L A +V G
Sbjct: 289 AVLIGAATRVPG 300
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESN--RLHI 187
K+ +++Q G GSD V G P P+ WYK+G IE +D +++ E N L I
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 66
Query: 188 NQANATDSGEYRCVASN 204
DS A N
Sbjct: 67 RDVTGEDSASIMVKAIN 83
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 219 LDFASISLNSMDAISERDFVVEFLSVATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDA 275
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
GSS+MP K NP E + A +V G ++
Sbjct: 276 FSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 309
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 35.4 bits (80), Expect = 0.078, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 144 GSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEYR 199
G + C ++ Y QV WY + +EN Y IT + L++ D G YR
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSE-KYEITYEDGVAILYVKDITKLDDGTYR 74
Query: 200 CVASNSYTSDENAVTIRVEGI 220
C N Y D + + V+G+
Sbjct: 75 CKVVNDYGEDSSYAELFVKGV 95
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 220 LEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDA 276
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
GSS+MP K NP E + A +V G ++
Sbjct: 277 FSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 310
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 139 QVF-GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ESNRLHINQANATDS 195
QVF G + C DG P P + W + + + + R+T L + A D+
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDN 453
Query: 196 GEYRCVASNSYTSD 209
G Y C+A+N+ +D
Sbjct: 454 GTYLCIAANAGGND 467
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 351 LPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENE 410
L K+AP + L D + L +A S+ K A +IR L + E + +
Sbjct: 202 LGLKAAPISTQTLQ-RDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEF-FAKGQ 259
Query: 411 PGSSIMPGKVNPTQCEALTMVAAQVMG 437
GSS MP K NP E +T +A + G
Sbjct: 260 KGSSAMPHKRNPIGSENMTGMARVIRG 286
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 222 LEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDA 278
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTI 444
GSS+MP K NP E + A +V G ++ +
Sbjct: 279 FSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILM 314
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 222 LEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDA 278
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
GSS+MP K NP E + A +V G ++
Sbjct: 279 FSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 312
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 222 LEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDA 278
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTI 444
GSS+MP K NP E + A +V G ++ +
Sbjct: 279 FSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILM 314
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 358 NKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMP 417
N +A++ D +VE+ + + L K+A D+ + S G LS GSS++P
Sbjct: 228 NSIDAISERDFVVELISVATLLMIHLSKLAEDL-IIFSTTEFGFVTLS-DAYSTGSSLLP 285
Query: 418 GKVNPTQCEALTMVAAQVMGNHVAV 442
K NP E + A +V G A+
Sbjct: 286 QKKNPDSLELIRSKAGRVFGRLAAI 310
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR------LHINQANATDSGEYRCV 201
IP V G P P + W+ +G ++ E+ + +I +N L ++ ++G+Y +
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 202 ASNSYTSDENAVTIRVEG 219
A N Y DE ++ G
Sbjct: 81 AKNEYGKDEKQISAHFMG 98
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQC 425
HD + E+ L +L+ + DI S L +L + E E GSS MP KVNP
Sbjct: 251 HDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDF 307
Query: 426 E 426
E
Sbjct: 308 E 308
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 376 LNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALT 429
L VA + +IA +IR L R + E+ P + + GSS MP K NP CE LT
Sbjct: 225 LAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLT 277
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 376 LNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALT 429
L VA + +IA +IR L R + E+ P + + GSS MP K NP CE LT
Sbjct: 226 LAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLT 278
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR------LHINQANATDSGEYRCV 201
IP V G P P + W+ +G ++ E+ + +I +N L ++ ++G+Y +
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 202 ASNSYTSDENAVTIRVEG 219
A N Y DE ++ G
Sbjct: 81 AKNEYGKDEKQISAHFMG 98
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK----DGQVIENDGVHY------RITESN----RLHIN 188
+GSD+ C V P + W K +G + DG Y I+ES RL +
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ D GEY C A+N E A + V G
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHINQANATDSGEYRCVA 202
+ C G P P + W K+G+ + G+ R + + L + +D G Y CV
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS-LVMESVVPSDRGNYTCVV 91
Query: 203 SNSYTSDENAVTIRV 217
N + S T+ V
Sbjct: 92 ENKFGSIRQTYTLDV 106
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V + H L AN +V G
Sbjct: 89 NEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGG 126
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K DG +V++ GV+ E L+I
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 188 NQANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 184 RNVTFEDAGEYTCLAGNS 201
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESN-RLHIN 188
++ + + + G + +V P +V WY +G ++ E+ +HY T L I
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEIL 69
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ DSG YR V +N + T+ V G
Sbjct: 70 DCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 127 LVP--VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
LVP K+ + E++ G + + C G+P Q W+K + I N ++
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------TSE 66
Query: 185 LHINQANATDSGEYRCVASNSYT 207
L N + D+G Y C +N++T
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFT 89
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 157 PIPQVFWYK-----DGQVIENDGVHYRITES---NRLHINQAN-ATDSGEYRCVASNSYT 207
P+ WYK D ++ + ++ S + LHI N D G+YRC ++S
Sbjct: 112 PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG 171
Query: 208 SDENAVTIRV 217
SD+ +T+RV
Sbjct: 172 SDQAIITLRV 181
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 222 LEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDA 278
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
G+S+MP K NP E + A +V G ++
Sbjct: 279 FSTGASLMPQKKNPDSLELIRSKAGRVFGRLASI 312
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNR----------- 184
E VGS +S+ CD D ++ + Q +END +S R
Sbjct: 9 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS----LQSERATLLEEQLPLG 64
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCR--DLPLFANCKLIV 239
HI DSG+YRC+ D +T++V+ ++ R ++P +L
Sbjct: 65 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTC 124
Query: 240 EGR 242
+ R
Sbjct: 125 QAR 127
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNR----------- 184
E VGS +S+ CD D ++ + Q +END +S R
Sbjct: 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS----LQSERATLLEEQLPLG 65
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCR--DLPLFANCKLIV 239
HI DSG+YRC+ D +T++V+ ++ R ++P +L
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTC 125
Query: 240 EGR 242
+ R
Sbjct: 126 QAR 128
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 220 LEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDA 276
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
GSS+MP K NP E + + +V G ++
Sbjct: 277 FSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASI 310
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 351 LPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENE 410
L ++AP + L D L +A S+ K+A +IR L + E + + +
Sbjct: 213 LGLEAAPISTQTLQ-RDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEE-AFAKGQ 270
Query: 411 PGSSIMPGKVNPTQCEALTMVAAQVMG 437
GSS MP K NP E +T +A + G
Sbjct: 271 KGSSAMPHKRNPIGSENMTGLARVIRG 297
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ ++ G L+L +
Sbjct: 204 LEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDA 260
Query: 410 -EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
GSS+MP K NP E + + +V G ++
Sbjct: 261 FSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASI 294
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQ--------VIENDGVHYRIT 180
++V I+L VG C G P + WY G+ V++ +GV R+T
Sbjct: 1 LQVTISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 59
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
I AN D+G YRC A+++ + A +
Sbjct: 60 ------IYNANIEDAGIYRCQATDAKGQTQEATVV 88
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K DG +V++ GV+ E L+I
Sbjct: 122 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 181
Query: 188 NQANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 182 RNVTFEDAGEYTCLAGNS 199
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 87 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 124
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K DG +V++ GV+ E L+I
Sbjct: 123 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 182
Query: 188 NQANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 183 RNVTFEDAGEYTCLAGNS 200
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 87
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 88 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 125
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 129 PVKVNITLETQVFGVGSDISIPC-DVDGYPIPQVFWYKDG-QVIENDGVHYRI------- 179
P K I++ + V +G+ + C + DG P + W+KDG ++ D R
Sbjct: 105 PSKPTISVPSSV-TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 180 --TESNRLHINQANATDSGEYRCVASNSY 206
+S L + A DSGEY C A N Y
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K DG +V++ GV+ E L+I
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 188 NQANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 184 RNVTFEDAGEYTCLAGNS 201
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 89 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 126
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K DG +V++ GV+ E L+I
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 188 NQANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 184 RNVTFEDAGEYTCLAGNS 201
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 89 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 126
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K DG +V++ GV+ E L+I
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 188 NQANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 184 RNVTFEDAGEYTCLAGNS 201
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGV--HYRITESNRLHINQANA-TDSGEYRCVAS 203
+ C G P P W K+G+ + + Y++ + I ++ +D G Y CV
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 88
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 89 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 126
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG--VHYRITESNRLHIN 188
KV++T F + + C++ P WYKDGQ +E V +RL +
Sbjct: 17 KVSLT-----FTTSERVVLTCELSRVDFPAT-WYKDGQKVEESELLVVKMDGRKHRLILP 70
Query: 189 QANATDSGEYRC 200
+A DSGE+ C
Sbjct: 71 EAKVQDSGEFEC 82
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYR 199
G + + C + P P++FW ++ ++++ + + + N L I N D+G Y
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYT 89
Query: 200 CVASN 204
A N
Sbjct: 90 VSAVN 94
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 147 ISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+++ C+V P W+ +G + YRIT A+ DSGEYRC S
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITS--------ASVNDSGEYRCQRGLS 70
Query: 206 YTSDENAVTIRVEGIFIHPSCR 227
SD + I + + S R
Sbjct: 71 GRSDPIQLEIHRGWLLLQVSSR 92
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 158 IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+P++ WYKD + + D +H+ + +RL + G Y C AS +Y + +T +
Sbjct: 140 LPKLQWYKDCKPLLLDNIHFSGVK-DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 198
Query: 218 EGI 220
E I
Sbjct: 199 EFI 201
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND 173
PV V+ ET +GS I + C+V G +W +G VI+ D
Sbjct: 211 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 255
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 158 IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+P++ WYKD + + D +H+ + +RL + G Y C AS +Y + +T +
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVK-DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Query: 218 EGI 220
E I
Sbjct: 197 EFI 199
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND 173
PV V+ ET +GS I + C+V G +W +G VI+ D
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 253
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 374 GALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAA 433
L +A SL K A +IR L + E + + + GSS MP K NP E +T ++
Sbjct: 224 ATLALIATSLEKFAVEIRNLQKTETREVEE-AFAKGQKGSSAMPHKRNPIGSENITGISR 282
Query: 434 QVMG 437
+ G
Sbjct: 283 VIRG 286
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 158 IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+P++ WYKD + + D +H+ + +RL + G Y C AS +Y + +T +
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVK-DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Query: 218 EGI 220
E I
Sbjct: 197 EFI 199
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND 173
PV V+ ET +GS I + C+V G +W +G VI+ D
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 253
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 158 IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+P++ WYKD + + D +H+ + +RL + G Y C AS +Y + +T +
Sbjct: 135 LPKLQWYKDCKPLLLDNIHFSGVK-DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 193
Query: 218 EGI 220
E I
Sbjct: 194 EFI 196
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND 173
PV V+ ET +GS I + C+V G +W +G VI+ D
Sbjct: 206 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 250
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 97 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 134
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN-----------A 192
G +++ C G P P+V W G+ I + E R HI +
Sbjct: 22 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQ-------EQGRFHIENTDDLTTLIIMDVQK 74
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEGI 220
D G Y N + SD V I + I
Sbjct: 75 QDGGLYTLSLGNEFGSDSATVNIHIRSI 102
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 97 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 134
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN-----------A 192
G +++ C G P P+V W G+ I + E R HI +
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQ-------EQGRFHIENTDDLTTLIIMDVQK 72
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEGI 220
D G Y N + SD V I + I
Sbjct: 73 QDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQ--------VIENDGVHYRIT 180
++V I+L VG C G P + WY G+ V++ +GV R+T
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
I AN D+G YRC A+++ + A +
Sbjct: 62 ------IYNANIEDAGIYRCQATDAKGQTQEATVV 90
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 351 LPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN 409
L F S + N +A++ D +VE + + L K+A D+ + S G L ++
Sbjct: 222 LEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDL-IIYSTSEFGF----LTDS 276
Query: 410 EP---GSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
+ GSS+MP K NP E + A +V G ++
Sbjct: 277 DAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 312
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHINQANATDSGEYRCVA 202
+ C G P P + W K+G+ + G+ R + + L + +D G Y CV
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS-LVMESVVPSDRGNYTCVV 199
Query: 203 SNSYTSDENAVTIRV 217
N + S T+ V
Sbjct: 200 ENKFGSIRQTYTLDV 214
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK----DGQVIENDGVHYRIT-----------ESNRLHI 187
+GSD+ C V P + W K +G + DG Y E L +
Sbjct: 236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSL 295
Query: 188 NQANATDSGEYRCVASNS 205
+ D+GEY C+A NS
Sbjct: 296 HNVTFEDAGEYTCLAGNS 313
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRC 200
G+ ++ C+V +V WYKDG+ + + R+ + RL + QA ++GEY C
Sbjct: 26 GASATLSCEV-AQAQTEVTWYKDGKKLSSSS-KVRVEAVGCTRRLVVQQAGQAEAGEYSC 83
Query: 201 VASNSYTS 208
A S
Sbjct: 84 EAGGQQLS 91
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQC 425
HD + E+ L +L+ + DI S L +L + E E GSS P KVNP
Sbjct: 268 HDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTXPHKVNPIDF 324
Query: 426 E 426
E
Sbjct: 325 E 325
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYR------ITESNR---LHINQANATDSGEYR 199
IP VDG P P + W +G V+ + E+ R L +NQ ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 200 CVASNSY 206
+A+N +
Sbjct: 80 LLAANPF 86
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYR------ITESNR---LHINQANATDSGEYR 199
IP VDG P P + W +G V+ + E+ R L +NQ ++G Y
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 200 CVASNSY 206
+A+N +
Sbjct: 84 LLAANPF 90
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 160 QVFWYKDGQVIENDGVHY---RITESNRLHINQANATDSGEYRCVASNSYTSDE 210
+V W K+GQ I+ G Y I L I+Q + D Y+CV S E
Sbjct: 46 EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 160 QVFWYKDGQVIENDGVHY-RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
++ WYKD +++ D + + + L ++ D+G YRCV + ++ + +T +E
Sbjct: 156 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRL 185
P K + LE Q V + S+ G P+ + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP--------THTQPS 53
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ +AN DSGEY C + SD +T+ E + +
Sbjct: 54 YRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVL 90
>pdb|3U46|L Chain L, Ch04hCH02L P212121
pdb|3U46|B Chain B, Ch04hCH02L P212121
pdb|3U4B|L Chain L, Ch04hCH02L FAB P4
Length = 215
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
LTI RVEPE Y CQ Y G
Sbjct: 74 LTITRVEPEDFAVYFCQQYGG 94
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYR------ITESNR---LHINQANATDSGEYR 199
IP VDG P P + W +G V+ + E+ R L +NQ ++G Y
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 200 CVASNSY 206
+A+N +
Sbjct: 326 LLAANPF 332
>pdb|4HWE|L Chain L, Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor
Alpha1 In Complex With A Human Neutralizing Monoclonal
Antibody Fragment
Length = 211
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAV 41
LTI R+EPE Y CQ Y G+
Sbjct: 74 LTISRLEPEDFAVYYCQQYETFGQGT 99
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVI--------ENDGVHYRITESNRLHINQANATDS 195
G++ + C V G P P V W K GQ + DG + L + A TD+
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH------GLLLTAALPTDA 82
Query: 196 GEYRCVASN 204
G Y C A N
Sbjct: 83 GVYVCRARN 91
>pdb|4HWB|L Chain L, Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor
Alpha 1 In Complex With A Human Neutralizing Monoclonal
Antibody Fragment
Length = 212
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAV 41
LTI R+EPE Y CQ Y G+
Sbjct: 74 LTISRLEPEDFAVYYCQQYETFGQGT 99
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVI--------ENDGVHYRITESNRLHINQANATDS 195
G++ + C V G P P V W K GQ + DG + L + A TD+
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH------GLLLTAALPTDA 82
Query: 196 GEYRCVASN 204
G Y C A N
Sbjct: 83 GVYVCRARN 91
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Query: 204 NSYTS 208
N Y S
Sbjct: 86 NEYGS 90
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 345 IAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
+A+ GL + A + E +D L + A + V L+ + D+ S G +
Sbjct: 249 LAKYLGLKRQQATTQIEN---YDHLAALCDACARLHVILIDMCRDVWQYIS---MGFFKQ 302
Query: 405 SLPENEPGSSIMPGKVNPTQCE 426
+ E E GSS MP KVNP E
Sbjct: 303 KVKEGEVGSSTMPHKVNPIDFE 324
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYR------ITESNR---LHINQANATDSGEYR 199
IP VDG P P + W +G V+ + E+ R L +NQ ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 200 CVASNSY 206
+A+N +
Sbjct: 80 LLAANPF 86
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 89
Query: 204 NSYTS 208
N Y S
Sbjct: 90 NEYGS 94
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVAS 203
+ C G P+P + W K+G+ + + G + + L + +D G Y CV
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 90
Query: 204 NSYTS 208
N Y S
Sbjct: 91 NEYGS 95
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 153 VDGYPIPQVFWYKDGQVIE-NDGVHYRITES----------NRLHINQANATDSGEYRCV 201
V G P P+V W +DGQ++E D ++ ++L I +D+G+Y+C+
Sbjct: 28 VQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCL 86
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCV 201
+G ++++ C G P+P + W K V+E I+ S L I D G Y C
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRK---VLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECE 183
Query: 202 ASNSYTSDENAVTIRVEG 219
A N D++ I V+
Sbjct: 184 AENIRGKDKHQARIYVQA 201
>pdb|3BOV|A Chain A, Crystal Structure Of The Receptor Binding Domain Of Mouse
Pd-L2
Length = 105
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNR----------- 184
E VGS +S+ CD D ++ + Q +END +S R
Sbjct: 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS----LQSERATLLEEQLPLG 65
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221
HI DSG+YRC+ D +T++V+ +
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY 105
>pdb|3RNK|B Chain B, Crystal Structure Of The Complex Between Mouse Pd-1 Mutant
And Pd-L2 Igv Domain
Length = 104
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNR----------- 184
E VGS +S+ CD D ++ + Q +END +S R
Sbjct: 9 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS----LQSERATLLEEQLPLG 64
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221
HI DSG+YRC+ D +T++V+ +
Sbjct: 65 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY 104
>pdb|1U6A|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv
Fab F105
pdb|3HI1|L Chain L, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|A Chain A, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 215
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI RVEPE Y CQ Y+
Sbjct: 74 LTISRVEPEDFAVYYCQQYD 93
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 129 PVKVNITLE-TQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNR-L 185
P+ V + + +Q G+D++ C P + W + + N + R + N L
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR----LHNGKLPSRAMDFNGIL 64
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I +D+G Y C SN + D+ T+ V+
Sbjct: 65 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LH 186
P + L+T+ G+ ++ C++ + V W K + + + G + + R L
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 187 INQANATDSGEYRCVASNSYTS 208
I+ + D+GEY C+ TS
Sbjct: 66 IHDLSVADAGEYSCMCGQERTS 87
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LHINQANATDSGEYRCV 201
G D+ + + G P V WYKDG+ + + G R L + A + D+GEY C
Sbjct: 11 GGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCD 69
Query: 202 A 202
A
Sbjct: 70 A 70
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRL 185
P K + LE V + S+ G P+ + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPS 53
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ +AN DSGEY C + SD +T+ E + +
Sbjct: 54 YRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVL 90
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRL 185
P K + LE V + S+ G P+ + W+ +G +I T +
Sbjct: 5 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPS 56
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ +AN DSGEY C + SD +T+ E + +
Sbjct: 57 YRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVL 93
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGV--HYRITESNRLHINQANA-TDSGEYRCVAS 203
+ C G P P W K+G+ + + Y++ + I ++ +D G Y CV
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 95
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
N Y S + + V H L AN +V G
Sbjct: 96 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 133
>pdb|4FQL|L Chain L, Influenza B Ha Antibody (Fab) Cr8033
Length = 215
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 16 LTIKRVEPERLGAYTCQAY 34
LTI R+EPE L Y CQ Y
Sbjct: 74 LTISRLEPEDLAVYYCQQY 92
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQC 425
D + E + L+ V +L K DI +A +G GSS MP K NP
Sbjct: 231 RDGIAEFANLLSLVTGTLGKFGQDIALMAE-----IGSEIRLSGGGGSSAMPHKQNPVNA 285
Query: 426 EALTMVA 432
E L +A
Sbjct: 286 ETLVTLA 292
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRL 185
P K + LE V + S+ G P+ + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPS 53
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ +AN DSGEY C + SD +T+ E + +
Sbjct: 54 YRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVL 90
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRL 185
P K + LE V + S+ G P+ + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPS 53
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ +AN DSGEY C + SD +T+ E + +
Sbjct: 54 YRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVL 90
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRL 185
P K + LE V + S+ G P+ + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPS 53
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ +AN DSGEY C + SD +T+ E + +
Sbjct: 54 YRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVL 90
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNRLHI 187
P V + +E+ + G + + C + + + W +DG Q++E++ RIT + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESN--RTRIT-GEEVEV 64
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ DSG Y CV S+ SD ++ V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 116 GYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV 175
G ++E + P K + F G + C + +VFW V++ +
Sbjct: 520 GLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSN-LARVFWKFQNGVLKAESP 578
Query: 176 HYRITESNRLHINQANATDSGEYRCVA 202
Y + L I + DSG Y+C++
Sbjct: 579 KYGLMGRKNLLIFNLSEGDSGVYQCLS 605
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRLHI 187
K + LE Q + V S+ G P+ W+ + +I + Y I
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY--------FI 58
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ A DSGEYRC + S SD + + + + +
Sbjct: 59 DAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLL 93
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRLHI 187
K + LE Q + V S+ G P+ W+ + +I + Y I
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY--------FI 58
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ A DSGEYRC + S SD + + + + +
Sbjct: 59 DAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLL 93
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIENDGVHYRITESNRLHI 187
K + LE Q + V S+ G P+ W+ + +I + Y I
Sbjct: 8 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY--------FI 59
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
+ A DSGEYRC + S SD + + + + +
Sbjct: 60 DAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLL 94
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 128 VPVKVNITLE---TQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESN 183
VP K ++L ++F G ++++ C+ + + + W+ +G + E ++
Sbjct: 4 VPQKPKVSLNPPWNRIFK-GENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------NS 54
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDL----PLFANC 235
L+I A DSGEY+C S+ + + + + + S + PLF C
Sbjct: 55 SLNIVNAKFEDSGEYKCQHQQVAESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRC 110
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
D +VE++ L + ++ K+A D + + + E+ P + GSS MP K NP
Sbjct: 235 DRIVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVA 291
Query: 425 CEALTMVAAQVMGNHVAVTIGGSNGH-FELNVFKPLIVSNVLRSIRLIADSATAFTDKCV 483
++ A +V ++ H L + +S L I + A T +
Sbjct: 292 AASVLAAANRVPALMSSIYQSMVQEHERSLGAWHAEWLS--LPEIFQLTAGALERTLDVL 349
Query: 484 SGIVANEENIHR--------LLHESLMLVTALNPHIGYDKAAKIA----KTAHKEGTTLK 531
G+ N EN+H+ ++ E++M+ AL PH+G A + KTA E LK
Sbjct: 350 KGMEVNAENMHQNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAACKTAVAEQKHLK 407
Query: 532 -----VAALKLGYLTEEEFNKWVVPEDMLG 556
V +K Y + ++ PE LG
Sbjct: 408 DIISQVDEVK-QYFNPSQLDEIFKPESYLG 436
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 128 VPVKVNITLE---TQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESN 183
VP K ++L ++F G ++++ C+ + + + W+ +G + E ++
Sbjct: 1 VPQKPKVSLNPPWNRIFK-GENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------NS 51
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDL----PLFANC 235
L+I A DSGEY+C S+ + + + + + S + PLF C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVAESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRC 107
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYN---GLGRAVSWTVTLQALP 51
++ + L I + G+YTCQA+N GL R T+T+ A P
Sbjct: 243 FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-----ESNRLHINQANATDSGEY 198
G++ + C V G P P V W K GQ + R++ + L + A TD+G Y
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQL---AASERLSFPADGAEHGLLLTAALPTDAGVY 84
Query: 199 RCVASN 204
C A N
Sbjct: 85 VCRARN 90
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 138 TQVFGVGSDISIPCDVDGYPIPQVFWYK 165
T V VGS +S+ C V+G P ++WY+
Sbjct: 10 TLVQPVGSPLSLECTVEGTSNPNLYWYR 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,550,836
Number of Sequences: 62578
Number of extensions: 595346
Number of successful extensions: 2856
Number of sequences better than 100.0: 211
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 2419
Number of HSP's gapped (non-prelim): 423
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)