RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10160
(558 letters)
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 474 bits (1224), Expect = e-164
Identities = 169/219 (77%), Positives = 185/219 (84%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++AELTGLPF +APNKFEALAAHDALVE SGAL T+AVSLMKIANDIR+LASGPRC
Sbjct: 245 RVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE+SLPENEPGSSIMPGKVNPTQCEALTMV AQVMGN AVT GS G+FELNVFKP+
Sbjct: 305 GLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N L+SIRL+AD+ +F D CV GI N E I LL SLMLVTALNPHIGYDKAAKI
Sbjct: 365 IAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDKAAKI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHKEG TLK AAL+LGYLTEEEF++WV PE M GP
Sbjct: 425 AKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGPG 463
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 462 bits (1191), Expect = e-159
Identities = 170/215 (79%), Positives = 189/215 (87%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA++AELTGLPF +APNKFEALAAHDALVE SGAL T+AVSLMKIANDIR+L SGPRC
Sbjct: 241 KVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRC 300
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGN A+TI GS+G+FELNVFKP+
Sbjct: 301 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPV 360
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ N+L+SIRL+AD+ +F DKCV+GI N E I LL SLMLVTALNPHIGYDKAAKI
Sbjct: 361 IIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNPHIGYDKAAKI 420
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDM 554
AK AHKEG TLK AAL+LGYLTEEEF++ V PE M
Sbjct: 421 AKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 433 bits (1115), Expect = e-148
Identities = 163/219 (74%), Positives = 184/219 (84%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A ++AELTGLPF +APNKFEALAAHDALVE SGAL T+AVSLMKIANDIR+L SGPRC
Sbjct: 244 KVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRC 303
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE+ LPENEPGSSIMPGKVNPTQCEALTMVAAQV+GN A+ GS G+FELNVFKP+
Sbjct: 304 GLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPV 363
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N L+S+RL+AD+ +F D C+ GI NEE I LL SLMLVTALNPHIGYDKAAKI
Sbjct: 364 IAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLVTALNPHIGYDKAAKI 423
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHKEGTTL+ AAL+LG L+EEEF+K V PE M+GP
Sbjct: 424 AKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 424 bits (1091), Expect = e-144
Identities = 172/218 (78%), Positives = 187/218 (85%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA +AE TGLPF +APNKFEALAAHDA VE+SGALNTVAVSLMKIANDIR L SGPRC
Sbjct: 237 KIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRC 296
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL+LPENEPGSSIMPGKVNPTQCEALTMV AQVMGNHVA+T+GGS GHFELNVFKPL
Sbjct: 297 GLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPL 356
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L SIRL+ D++ +F CV GI AN E I +LLHESLMLVTALNP IGYDKAA +
Sbjct: 357 IAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAV 416
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
AK AHKEGTTLK AALKLG LT EEF++ VVPE M GP
Sbjct: 417 AKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGP 454
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 422 bits (1088), Expect = e-144
Identities = 142/211 (67%), Positives = 170/211 (80%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA++AELTGLPF +APN FEA AAHDALVEVSGAL T+AVSL KIAND+R L+SGPR
Sbjct: 240 KVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRA 299
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE++LP N+PGSSIMPGKVNP EA+ MVAAQV+GN A+T+ GS G ELNVFKP+
Sbjct: 300 GLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPV 359
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L+SIRL+A++ +F DKCV GI ANEE + SLMLVTALNPHIGY+KAA+I
Sbjct: 360 IAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHIGYEKAAEI 419
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVV 550
AK A KEG TL+ AAL+LG LTEEE ++ +
Sbjct: 420 AKEALKEGRTLREAALELGLLTEEELDEILD 450
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 408 bits (1051), Expect = e-138
Identities = 155/217 (71%), Positives = 180/217 (82%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A +IA+ TGLPF +APNKFEALAAHDA+VE GAL T+A SLMKIANDIR+L SGPRC
Sbjct: 242 KVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRC 301
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL +PENEPGSSIMPGKVNPTQCEALTMV QVMGN + GS G+FELNVFKP+
Sbjct: 302 GLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPV 361
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ N L+S+RL++D+ +F D CV GI N+E I +LL+ SLMLVTALNPHIGYD AAKI
Sbjct: 362 IIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDNAAKI 421
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL+LG L+EEEF++WVVPE M+G
Sbjct: 422 AKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMVG 458
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 319 bits (819), Expect = e-103
Identities = 137/216 (63%), Positives = 167/216 (77%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
AA++A L+GLPF +APNKF ALA H+ LV +SGAL T+AV+LMKIAND+R L SGPR GL
Sbjct: 245 AAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGL 304
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIV 461
E+ LP NEPGSSIMPGKVNPTQCEAL+M+A QVMGN + S GH +LNVFKP+I+
Sbjct: 305 AEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVII 364
Query: 462 SNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAK 521
N+L+SIRL+AD F CV+G+ + E + L LMLVTALNPHIGYDKAA+IAK
Sbjct: 365 HNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAK 424
Query: 522 TAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A+ EGTTL+ AAL LGYLT+E+F+ WV PE+ML
Sbjct: 425 KAYAEGTTLREAALALGYLTDEQFDAWVRPENMLEA 460
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 278 bits (715), Expect = 7e-88
Identities = 101/219 (46%), Positives = 136/219 (62%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K+AE+TGLP A + EA A VEVSGAL +AV L KI ND+R L+SGPR
Sbjct: 247 LVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRA 306
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GL E++LP + GSSIMPGKVNP E + V QV+GN VT+ G ELNV +P+
Sbjct: 307 GLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPV 366
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+ SI ++ ++ +KC+ GI ANEE + S+ +VTALNP+IGY+ AA+I
Sbjct: 367 IAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGYENAAEI 426
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK A + G +++ L+ G LTEEE + + PE+M P
Sbjct: 427 AKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPG 465
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 272 bits (698), Expect = 1e-85
Identities = 102/208 (49%), Positives = 140/208 (67%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K++E+TGLP K A N +A DA VEVSGAL +AV L KIAND+R L+SGPR
Sbjct: 240 LVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRA 299
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE++LP +PGSSIMPGKVNP E + VA QV+GN + +T+ G ELNVF+P+
Sbjct: 300 GLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPV 359
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L SI ++ ++ ++C+ GI ANEE + S+ +VTALNP+IGY+ AA+I
Sbjct: 360 IAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIGYEAAAEI 419
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNK 547
AK A + G +++ L+ G LTEEE ++
Sbjct: 420 AKEALETGRSVRELVLEEGLLTEEELDE 447
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 258 bits (662), Expect = 5e-80
Identities = 97/215 (45%), Positives = 133/215 (61%)
Query: 343 AKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
K+AE+TGLP A N EA A V VSGAL +AV L KI ND+R L+SGPR GL
Sbjct: 249 KKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLN 308
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462
E++LP + GSSIMPGKVNP E + V +V+GN +T+ G +LNV +P+I
Sbjct: 309 EINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPVIAY 368
Query: 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKT 522
+ SI ++ ++ +KC+ GI ANEE + S+ +VTALNP+IGY+ AA IAK
Sbjct: 369 ALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYIGYENAAIIAKE 428
Query: 523 AHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A + G +++ L+ G LTEEE + + PE+M P
Sbjct: 429 ALETGKSVREVVLERGLLTEEELDDILSPENMTKP 463
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 253 bits (649), Expect = 4e-78
Identities = 106/219 (48%), Positives = 142/219 (64%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ +A +TGLP A + +A DA VEVSGAL AV+L KIAND+R L+SGPR
Sbjct: 245 RVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRT 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE++LP +PGSSIMPGKVNP E + +A QV+GN V +T+ G ELNV +P+
Sbjct: 305 GLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L SI ++ ++ AFTD CV GI ANEE + +S+ + TALNPHIGY+ AA+I
Sbjct: 365 IAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIGYEAAARI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK A G +++ AL+ G L+EEE + + P M P
Sbjct: 425 AKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHPG 463
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 217 bits (555), Expect = 1e-64
Identities = 89/214 (41%), Positives = 127/214 (59%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
K+AE+TGLP A N EA + A V V GAL +AV + KI ND+R L+SGPR GL E
Sbjct: 247 KLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNE 306
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
++LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV +P+I
Sbjct: 307 INLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQA 366
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTA 523
+ SI ++ ++ TDKCV+GI AN+E + S+ +VT LNP IG+ + K
Sbjct: 367 MFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNGDIVGKIC 426
Query: 524 HKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
+ G +++ L+ G LTEEE + E+++ P
Sbjct: 427 AETGKSVREVVLEKGLLTEEELDDIFSVENLMHP 460
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 194 bits (495), Expect = 8e-56
Identities = 89/215 (41%), Positives = 135/215 (62%)
Query: 343 AKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
+A ++ LP A + +A DA EVS AL +++ KIAND+R +ASGPR GL
Sbjct: 254 KHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLA 313
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462
E+ LP +PGSSIMPGKVNP E + +A QV+GN + + G ELNV +P++V
Sbjct: 314 EIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPVLVF 373
Query: 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKT 522
N+L+SI ++ + AFTD C+ GI ANE+ + + +S+ ++TA+NPHIGY+ AA++AK
Sbjct: 374 NLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAARVAKE 433
Query: 523 AHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A G +++ +K G L++E+ + P +M P
Sbjct: 434 AIATGQSVRELCVKNGVLSQEDLELILDPFEMTHP 468
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 182 bits (464), Expect = 7e-53
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
++AEL G F APN +A++ D LVE+ AL +AVSL KIAND+R L+SG
Sbjct: 182 RERVAELLGF-FGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSG---EF 237
Query: 402 GELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460
GE+ LP+ +PGSSIMP KVNP E + +A +V+GN A+ G E NV P+
Sbjct: 238 GEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVE 297
Query: 461 VSNVLRSIRLIADSATAFTDKCVSGIVAN 489
+ S L+ + T G+ N
Sbjct: 298 REALPDSFDLLDAALRLLTGVL-EGLEVN 325
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 151 bits (384), Expect = 1e-41
Identities = 56/96 (58%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A ++ TGLP APN FEA + DA+VE SGAL +A L K AND+R L+SGP G
Sbjct: 219 AKELGFFTGLPVP-APNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FGF 276
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMG 437
ELSLPE EPGSSIMPGKVNP Q E L A +V G
Sbjct: 277 VELSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 136 bits (345), Expect = 5e-37
Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 368 ALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEA 427
A+ E AL A L KIA D+R L SG LGE LP +PGSSIMP KVNP E
Sbjct: 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAEL 179
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFT 479
+ +A V+GN VAV G N P + + S+ L+ D+
Sbjct: 180 VRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLLL 231
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus. Fumarase C
catalyzes the stereo-specific interconversion of
fumarate to L-malate as part of the Kreb's cycle. The
full-length protein forms a tetramer with visible
globular shape. FumaraseC_C is the C-terminal 65
residues referred to as domain 3. The core of the
molecule consists of a bundle of 20 alpha-helices from
the five-helix bundle of domain 2. The projections from
the core of the tetramer are generated from domains 1
and 3 of each subunit. FumaraseC_C does not appear to be
part of either the active site or the activation site
but is helical in structure forming a little bundle.
Length = 55
Score = 110 bits (277), Expect = 1e-29
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 503 LVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
LVTALNPHIGYDKAAKIAK A K G TL+ AL+LG LTEEE ++ + PE+M GP
Sbjct: 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 79.6 bits (197), Expect = 3e-18
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQA 190
+ G C V G P P V W+KDGQ + + +++T L I+
Sbjct: 5 QKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSD-RFKVTYEGGTYTLTISNV 63
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
D G+Y CVA+NS E + + V
Sbjct: 64 QPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 34.2 bits (79), Expect = 0.022
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI V+P+ G YTC A N G A + + L
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEA-SAELT 89
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 69.8 bits (171), Expect = 6e-15
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANAT 193
+ G +++ C+ G P P+V WYK G + + + ++ S L I+
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 194 DSGEYRCVASNSYTSDENAVTIRV 217
DSG Y C A+NS S + T+ V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
Score = 30.9 bits (70), Expect = 0.29
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI V PE G YTC A N G A S TL
Sbjct: 53 LTISNVTPEDSGTYTCAATNSSGSASS-GTTLT 84
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 69.8 bits (171), Expect = 6e-15
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANAT 193
+ G +++ C+ G P P+V WYK G + + + ++ S L I+
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 194 DSGEYRCVASNSYTSDENAVTIRV 217
DSG Y C A+NS S + T+ V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
Score = 30.9 bits (70), Expect = 0.29
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI V PE G YTC A N G A S TL
Sbjct: 53 LTISNVTPEDSGTYTCAATNSSGSASS-GTTLT 84
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 66.3 bits (162), Expect = 1e-13
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANAT 193
+T V G D+++ C G P P WYKDG + + N +A
Sbjct: 4 LTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS--------QNGFFTPNVSAE 55
Query: 194 DSGEYRCVASNSYTS-DENAVTIRV 217
DSG Y CVASN N VT+ V
Sbjct: 56 DSGTYTCVASNGGGGKTSNPVTLTV 80
Score = 28.2 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
++N V E G YTC A NG G S VTL
Sbjct: 43 SQNGFFTPNVSAEDSGTYTCVASNGGGGKTSNPVTLT 79
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 72.7 bits (179), Expect = 1e-13
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 42/220 (19%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
A D + E++ L + +L KIA D+ L + +GE++ P + GSS MP K N
Sbjct: 221 TARDRIAELASFLALLTGTLGKIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRN 277
Query: 422 PTQCEALTMVAAQVMGNHVAVTI---------GGSNGHFELNVFKPLIVSNVLRSIRLIA 472
P CE + +A +V G A+ + H E L I L+A
Sbjct: 278 PVGCELIVALARRVPG-LAALLLDAMVQEHERDAGAWHAEW---------IALPEIFLLA 327
Query: 473 DSATAFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIGYDKA----AKIA 520
A + +SG+ NE+ + L E++M+ AL P +G +A +
Sbjct: 328 SGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMM--ALAPKLGRQEAHDLVYEAC 385
Query: 521 KTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
A +EG L+ L+ YL++EE + + P + LG
Sbjct: 386 MRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPANYLG 425
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 65.1 bits (159), Expect = 1e-13
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDSGEYRCVA 202
G +++ C +G P+P + W KDG+ + R S L I + DSG Y CVA
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPE---SNRFVASGSTLTIKSVSLEDSGLYTCVA 58
Query: 203 SNS 205
NS
Sbjct: 59 ENS 61
Score = 28.9 bits (65), Expect = 0.86
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLG 38
S + + + LTIK V E G YTC A N G
Sbjct: 30 ESNRFVASGSTLTIKSVSLEDSGLYTCVAENSAG 63
>gnl|CDD|204025 pfam08686, PLAC, PLAC (protease and lacunin) domain. The PLAC
(protease and lacunin) domain is a short six-cysteine
region that is usually found at the C terminal of
proteins. It is found in a range of proteins including
PACE4 (paired basic amino acid cleaving enzyme 4) and
the extracellular matrix protein lacunin.
Length = 34
Score = 63.4 bits (155), Expect = 3e-13
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 225 SCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR 259
C+D P NC+L+V+ R C H YY Q CC SC R
Sbjct: 1 ECKDSP-RTNCELVVQARLCSHKYYRQRCCRSCRR 34
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 69.1 bits (170), Expect = 1e-12
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 365 AHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNP 422
D + E+ AL +A +L KIA DIR L R +GE+ P + + GSS MP K NP
Sbjct: 213 PRDRIAELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEKGQVGSSTMPHKRNP 269
Query: 423 TQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF---KPLIVSNVLRSI----RLIADSA 475
E + +A V E V + L S+V R+I L+ D+A
Sbjct: 270 IDSENIEGLARLVRALAAPA--------LENLVQWHERDLSDSSVERNILPDAFLLLDAA 321
Query: 476 TAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPH-IGYDKAAKIAKTAH 524
+ + G+V N E + R L + L+ AL +G +A ++ K +
Sbjct: 322 LSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKEEN 377
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 62.5 bits (151), Expect = 2e-12
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRC 200
+++ C G P P + W K+G+ + + + + L I+ DSG Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 201 VASNSYTSDENAVT 214
VASNS + +VT
Sbjct: 61 VASNSAGTVSASVT 74
Score = 30.1 bits (67), Expect = 0.45
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLG 38
LTI V E G YTC A N G
Sbjct: 45 LTISNVTLEDSGTYTCVASNSAG 67
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 67.3 bits (165), Expect = 6e-12
Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 48/232 (20%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
++AE GL + D + E AL +A SL K A DIR L R +
Sbjct: 202 EERVAEKLGLKPAPISTQVSP---RDRIAEFFSALALLAGSLEKFARDIRLLQ---RTEV 255
Query: 402 GELSLP--ENEPGSSIMPGKVNPTQCEALT----MVAAQVMGNHVAVTI----GGSNGHF 451
GE+ P + + GSS MP K NP E +T + A V + + ++
Sbjct: 256 GEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENLVLWHERDLTD--- 312
Query: 452 ELNVFKPLIVSNVLRSI----RLIADSATAFTDKCVSGIVANEENIHR-------LLHES 500
S+V R I + AD A + G+ N E + R L+
Sbjct: 313 ----------SSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASE 362
Query: 501 LMLVTALNPHIGYDKAAKI----AKTAHKEGTTLKVAALK----LGYLTEEE 544
+++ +G ++A ++ A A ++G L YL+EEE
Sbjct: 363 RVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEE 414
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to the
second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 57.8 bits (140), Expect = 9e-11
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 155 GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
G+P P V W KDGQ + D RI + L I +A +D G Y+CVA+N
Sbjct: 23 GHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNM 73
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 60.8 bits (148), Expect = 7e-10
Identities = 64/217 (29%), Positives = 86/217 (39%), Gaps = 38/217 (17%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPT 423
D E+ AL +A +L K A DIR L R E+ P + + GSS MP K NP
Sbjct: 222 RDRHAELLDALALLATTLEKFAVDIRLLQ---RTEHFEVEEPFGKGQVGSSAMPHKRNPI 278
Query: 424 QCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIADSA 475
E V G A I NV + L S+V R I ++AD
Sbjct: 279 DFE-------NVCGL--ARVIRSVLSPALENVPLWHERDLTDSSVERIILPDSFILADIM 329
Query: 476 TAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI-------GYDKAAKIAK-----TA 523
T K V +V N ENI R L +L L+ + I G ++A +I + A
Sbjct: 330 LKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAA 389
Query: 524 HKEGTTLKVAALKLG----YLTEEEFNKWVVPEDMLG 556
+ L L YL EEE + + PE +G
Sbjct: 390 EVDEPDLLEFLLADERITKYLKEEELAELLDPETYIG 426
>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin
and similar proteins. Ig_Titin_like: immunoglobulin
(Ig)-like domain found in titin-like proteins. Titin
(also called connectin) is a fibrous sarcomeric protein
specifically found in vertebrate striated muscle. Titin
is gigantic, depending on isoform composition it ranges
from 2970 to 3700 kDa, and is of a length that spans
half a sarcomere. Titin largely consists of multiple
repeats of Ig-like and fibronectin type 3 (FN-III)-like
domains. Titin connects the ends of myosin thick
filaments to Z disks and extends along the thick
filament to the H zone. It appears to function
similarly to an elastic band, keeping the myosin
filaments centered in the sarcomere during muscle
contraction or stretching. Within the sarcomere, titin
is also attached to or is associated with myosin binding
protein C (MyBP-C). MyBP-C appears to contribute to the
generation of passive tension by titin, and similar to
titin has repeated Ig-like and FN-III domains. Also
included in this group are worm twitchin and insect
projectin, thick filament proteins of invertebrate
muscle, which also have repeated Ig-like and FN-III
domains.
Length = 74
Score = 54.9 bits (133), Expect = 9e-10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESN-RLHINQANATDSGEYRCVAS 203
+ + + G P P V W KDG+ ++ G V T S+ L I A +DSG+Y
Sbjct: 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60
Query: 204 NSYTSDENAVTIRV 217
N + ++V
Sbjct: 61 NPAGEKSATINVKV 74
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 52.2 bits (125), Expect = 1e-08
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCV 201
+G +++ CD DG+P P + W KDG+ IE+ Y E + + I + D EY C+
Sbjct: 17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCI 76
Query: 202 ASNSYTSDENAVTIRV 217
A N E + ++V
Sbjct: 77 AENKAGEQEAEIHLKV 92
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 54.6 bits (132), Expect = 2e-08
Identities = 48/202 (23%), Positives = 73/202 (36%), Gaps = 27/202 (13%)
Query: 375 ALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQ 434
L +A SL K AN+IR L E + + GSS MP K NP E +T +A
Sbjct: 22 VLALIATSLEKFANEIRLLQ-RSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARV 80
Query: 435 VMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR----SIRLIADSATAFTDKCVSGIVANE 490
+ V H E ++ S+ R L D + +V
Sbjct: 81 LRSYLVTALENVPLWH-ERDLS----HSSAERIALPDAFLALDYILNRFVNILENLVVFP 135
Query: 491 ENIHR--------LLHESLMLVTALNPHIG----YDKAAKIAKTAHKEGTTLKVAALK-- 536
ENI R + E ++L + +G ++ + A A K L+
Sbjct: 136 ENIERNLDKTLGFIATERVLL-ELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEADE 194
Query: 537 --LGYLTEEEFNKWVVPEDMLG 556
LT+EE ++ PE +G
Sbjct: 195 RFTKQLTKEELDELFDPEAFVG 216
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 55.0 bits (133), Expect = 6e-08
Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 55/215 (25%)
Query: 376 LNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAA 433
L +A +L KI +IR L R +GE+ + + GSS MP K NP E + +A
Sbjct: 238 LANIATTLDKIGLEIRNLQ---RTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLAR 294
Query: 434 QVMGNHVAVTIGGSNGHFELNVFKPLIVSNVL---------RSIRLIADSATAFTD---- 480
V N +P +++N L R+I + TD
Sbjct: 295 VVRSN-----------------VEPALLNNPLWDERDLTNSSCERIIFPESCVLTDHILK 337
Query: 481 ---KCVSGIVANEENIHR---LLH-----ESLMLVTALNPHIGYDKAAKIAKT----AHK 525
K + G+ N ENI R L E++M+ A +G +A ++ + AH+
Sbjct: 338 LMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELA-KRGMGRQEAHELVRQAAMKAHE 396
Query: 526 EGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
EG LK L+ + YLTEEE + + PE +G
Sbjct: 397 EGRHLKEVLLEDEEVMKYLTEEELEELLDPETYIG 431
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 49.1 bits (117), Expect = 9e-08
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 147 ISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ IPC G P P + W KDG QV E+ H I+ L I D G Y CVA N+
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFH--ISPEGYLAIRDVGVADQGRYECVARNT 58
Query: 206 --YTS 208
Y S
Sbjct: 59 IGYAS 63
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the
immunoglobulin superfamily are found in hundreds of
proteins of different functions. Examples include
antibodies, the giant muscle kinase titin and receptor
tyrosine kinases. Immunoglobulin-like domains may be
involved in protein-protein and protein-ligand
interactions. The Pfam alignments do not include the
first and last strand of the immunoglobulin-like domain.
Length = 62
Score = 48.7 bits (116), Expect = 1e-07
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEN---DGVHYRITESNRLHINQANATDSGEYRC 200
GS +++ C V G P V W+K+G+ +E G S L I+ DSG Y C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 201 VA 202
V
Sbjct: 61 VV 62
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 48.9 bits (117), Expect = 1e-07
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYT 207
C +G P P++ W K G + D R N L I+ + D GEYRC ASNS
Sbjct: 5 CIAEGLPTPEISWIKIGGELPAD----RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60
Query: 208 SDENAVTIRVE 218
S + +++ VE
Sbjct: 61 SARHTISVTVE 71
>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor (IL1R) and similar proteins.
Ig2_IL1R_like: domain similar to the second
immunoglobulin (Ig)-like domain of interleukin-1
receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines
which participate in the regulation of inflammation,
immune responses, and hematopoiesis. These cytokines
bind to the IL-1 receptor type 1 (IL1R1), which is
activated on additional association with an accessory
protein, IL1RAP. IL-1 also binds a second receptor
designated type II (IL1R2). Mature IL1R1 consists of
three IG-like domains, a transmembrane domain, and a
large cytoplasmic domain. Mature IL1R2 is organized
similarly except that it has a short cytoplasmic domain.
The latter does not initiate signal transduction. A
naturally occurring cytokine IL-1RA (IL-1 receptor
antagonist) is widely expressed and binds to IL-1
receptors, inhibiting the binding of IL-1 alpha and IL-1
beta. This group also contains ILIR-like 1 (IL1R1L)
which maps to the same chromosomal location as IL1R1 and
IL1R2.
Length = 92
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 139 QVFGVGSDISIPC-DVDGYPI----PQVFWYKDGQVIENDGVHYRITESNRLHINQANAT 193
Q+ I C D+D + P V WYKD +++E D R + ++L I
Sbjct: 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKRFVKGSKLLIQNVTEE 62
Query: 194 DSGEYRCVASNSY 206
D+G Y C + ++
Sbjct: 63 DAGNYTCKLTFTH 75
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of
protein tyrosine kinase (PTK) 7, also known as CCK4.
Ig2_PTK7: domain similar to the second immunoglobulin
(Ig)-like domain in protein tyrosine kinase (PTK) 7,
also known as CCK4. PTK7 is a subfamily of the receptor
protein tyrosine kinase family, and is referred to as an
RPTK-like molecule. RPTKs transduce extracellular
signals across the cell membrane, and play important
roles in regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase as
it has several unusual residues in some of the highly
conserved tyrosine kinase (TK) motifs; it is predicted
to lack TK activity. PTK7 may function as a
cell-adhesion molecule. PTK7 mRNA is expressed at high
levels in placenta, melanocytes, liver, lung, pancreas,
and kidney. PTK7 is overexpressed in several cancers,
including melanoma and colon cancer lines.
Length = 77
Score = 47.2 bits (112), Expect = 5e-07
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASNS 205
+++ C +DG+P P W++DG + + +Y ++ R L + A DSG Y C A N+
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 206 YTS 208
+ S
Sbjct: 61 FGS 63
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 47.2 bits (112), Expect = 6e-07
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCV 201
+GS + C G P P W K+GQ + ++ RI E+ L I + + +DSG Y+CV
Sbjct: 13 IGSSLRWECKASGNPRPAYRWLKNGQPLASEN---RIEVEAGDLRITKLSLSDSGMYQCV 69
Query: 202 ASNSYTS 208
A N + +
Sbjct: 70 AENKHGT 76
>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in
neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin
(Ig)-like domain in neuregulins (NRGs). NRGs are
signaling molecules, which participate in cell-cell
interactions in the nervous system, breast, heart, and
other organ systems, and are implicated in the pathology
of diseases including schizophrenia, multiple sclerosis,
and breast cancer. There are four members of the
neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1
protein, binds to and activates the tyrosine kinases
receptors ErbB3 and ErbB4, initiating signaling
cascades. The other NRGs proteins bind one or the other
or both of these ErbBs. NRG-1 has multiple functions;
for example, in the brain it regulates various processes
such as radial glia formation and neuronal migration,
dendritic development, and expression of
neurotransmitters receptors; in the peripheral nervous
system NRG-1 regulates processes such as target cell
differentiation, and Schwann cell survival. There are
many NRG-1 isoforms, which arise from the alternative
splicing of mRNA. Less is known of the functions of the
other NRGs. NRG-2 and -3 are expressed predominantly in
the nervous system. NRG-2 is expressed by motor neurons
and terminal Schwann cells, and is concentrated near
synaptic sites and may be a signal that regulates
synaptic differentiation. NRG-4 has been shown to direct
pancreatic islet cell development towards the delta-cell
lineage.
Length = 75
Score = 46.8 bits (111), Expect = 7e-07
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 155 GYPIPQVFWYKDGQVI----ENDGVHYRITESN-RLHINQANATDSGEYRCVASNSYTSD 209
YP + W+KDG+ + + + R + N L IN+A DSGEY CV N +D
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 210 ENAVTI 215
+
Sbjct: 70 TVTANV 75
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 46.2 bits (109), Expect = 8e-07
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 143 VGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCV 201
G +++ C +G P P + WY++G + G + + L ++ + DSG Y CV
Sbjct: 14 SGGGVTLTCSAEGGPPPPTISWYRNG--SISGGSGGLGSSGSTLTLSSVTSEDSGTYTCV 71
Query: 202 ASN 204
ASN
Sbjct: 72 ASN 74
Score = 27.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LT+ V E G YTC A N
Sbjct: 55 LTLSSVTSEDSGTYTCVASN 74
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 46.1 bits (109), Expect = 1e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--RLHINQANATDSGEYRCVASNS 205
S+ C +G P+P++ W K+G I +N LHI+ D+G Y C+A N
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61
Query: 206 YTSDENAVTIRVE 218
DE+ ++ VE
Sbjct: 62 AGVDEDISSLFVE 74
Score = 28.3 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 6 SENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLG 38
S+ L N + L I V E GAYTC A N G
Sbjct: 29 SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG 63
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 45.5 bits (108), Expect = 1e-06
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210
C+V G P+P V W K+ + G I + L I A D G Y C A N E
Sbjct: 5 CEVGGDPVPTVLWRKEDGELP-KG-RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62
Query: 211 NAVTIRV 217
+ ++ V
Sbjct: 63 ASASLTV 69
Score = 32.4 bits (74), Expect = 0.058
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
L+ L I+ V G+YTC+A N +G+
Sbjct: 32 LDDKSLKIRNVTAGDEGSYTCEAENMVGKI 61
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 370 VEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 427
++V AL+++ + KIA DIR LA L E+ P + + GSS MP K NP + E
Sbjct: 233 IDVLNALSSLGATAHKIATDIRLLA-----NLKEVEEPFEKGQIGSSAMPYKRNPMRSER 287
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIV 487
+A +M S FE + + L AD+ G+V
Sbjct: 288 CCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLV 347
Query: 488 ANEENIHRLLHESL 501
+ I R + + L
Sbjct: 348 VYPKVIERHIRQEL 361
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRIT-ESNR---LHINQANATDSGEY 198
G +++ C V G P P+V W K+ Q + +D HY + E + L I ++ DSG+Y
Sbjct: 16 GKTLNLTCTVFGDPDPEVSWLKNDQALALSD--HYNVKVEQGKYASLTIKGVSSEDSGKY 73
Query: 199 RCVASNSYTSDENAVTIRV 217
V N Y + VT+ V
Sbjct: 74 GIVVKNKYGGETVDVTVSV 92
>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain
of human titin C terminus and similar proteins.
Ig5_Titin_like: domain similar to the M5, fifth
immunoglobulin (Ig)-like domain from the human titin C
terminus. Titin (also called connectin) is a fibrous
sarcomeric protein specifically found in vertebrate
striated muscle. Titin is gigantic; depending on isoform
composition it ranges from 2970 to 3700 kDa, and is of a
length that spans half a sarcomere. Titin largely
consists of multiple repeats of Ig-like and fibronectin
type 3 (FN-III)-like domains. Titin connects the ends of
myosin thick filaments to Z disks and extends along the
thick filament to the H zone, and appears to function
similar to an elastic band, keeping the myosin filaments
centered in the sarcomere during muscle contraction or
stretching.
Length = 92
Score = 45.0 bits (106), Expect = 4e-06
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRC 200
G CDVDG P P V W ++GQ+I + H +IT + + I++ +D G Y
Sbjct: 18 GESARFSCDVDGEPAPTVTWMREGQIIVSSQRH-QITSTEYKSTFEISKVQMSDEGNYTV 76
Query: 201 VASNSYTSDENAVTI 215
V NS E T+
Sbjct: 77 VVENSEGKQEAQFTL 91
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 44.4 bits (105), Expect = 7e-06
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 130 VKVNIT-LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-----DG---VHYRIT 180
V+ IT LE Q I++ C+ +G PIP++ W + + DG V
Sbjct: 1 VQPKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHAR 60
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
S+ L + TD+G Y C ASN D+ ++ + V
Sbjct: 61 VSS-LTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 71
Score = 43.4 bits (102), Expect = 9e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204
DI C+V G P P V W K+G VI +D +++I + + L + +D G Y+C+A N
Sbjct: 1 DIVFECEVTGKPTPTVKWVKNGDMVIPSD--YFKIVKEHNLQVLGLVKSDEGFYQCIAEN 58
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 47.6 bits (114), Expect = 1e-05
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 20/173 (11%)
Query: 344 KIAELTGLPFKSA-PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
+ AEL G F + N +A++ D ++E A + V L ++A D+ +S P G
Sbjct: 212 RTAELLG--FDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSS-PEFGFI 268
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVA---VTIGGSNG-HFELNVFKP 458
EL E GSSIMP K NP E + A +V+G + G + +L K
Sbjct: 269 ELP-DEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKE 327
Query: 459 LI---VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALN 508
+ V + S+R++A VSG+ N+E + T L
Sbjct: 328 PLFDSVDTLEDSLRVLAG--------MVSGLTVNKERMREAAEAGFSTATDLA 372
>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrkB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 81
Score = 43.1 bits (102), Expect = 1e-05
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR--------LHINQANATDSGEY 198
IP V G P P + WY +G V+ E+D + I L + ++G Y
Sbjct: 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNY 61
Query: 199 RCVASNSYTSDENAVT 214
VASN Y D +++
Sbjct: 62 TLVASNEYGQDSKSIS 77
>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is
a major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A;
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGF-A also interacts with VEGFR-1,
which it binds more strongly than VEGFR-2. VEGFR-2 and
-1 may mediate a chemotactic and a survival signal in
hematopoietic stem cells or leukemia cells.
Length = 70
Score = 42.6 bits (100), Expect = 2e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206
+ IP GYP P+V WYK+GQ+I +++ L I + D+G Y V +N
Sbjct: 1 VKIPVKYYGYPPPEVKWYKNGQLIV---LNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPI 57
Query: 207 TSDENAVTI 215
T +E T
Sbjct: 58 TKEEQRHTF 66
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central
nervous system. In rats, a lack of contactin-5 (NB-2)
results in an impairment of the neuronal activity in the
auditory system. Contactin-5 is expressed specifically
in the postnatal nervous system, peaking at about 3
weeks postnatal. Contactin-5 is highly expressed in the
adult human brain in the occipital lobe and in the
amygdala; lower levels of expression have been detected
in the corpus callosum, caudate nucleus, and spinal
cord.
Length = 94
Score = 43.4 bits (102), Expect = 2e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 140 VFGVGSD---ISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQANATDS 195
+F SD + + C+ G P+P W ++G I+ + Y + + N + N + DS
Sbjct: 12 IFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDS 71
Query: 196 GEYRCVASNSYTS 208
G Y+C+A+NS S
Sbjct: 72 GRYQCLATNSIGS 84
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 46.3 bits (110), Expect = 2e-05
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
AA +A GLP + P D + E AL VA +L KIA DI L+ + +
Sbjct: 203 AAALAARLGLPLPALPWH----TQRDRIAEFGSALALVAGALGKIAGDIALLS---QTEV 255
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMG 437
GE+ GSS MP K NP L A +V G
Sbjct: 256 GEV-FEAGGGGSSAMPHKRNPVGAALLAAAARRVPG 290
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 41.8 bits (98), Expect = 3e-05
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G + C+ GYP P + W K G + D H + S L I++ D G+Y C A
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRH-LVLSSGTLRISRVALHDQGQYECQAV 60
Query: 204 NSYTSDENAVTIRV 217
N S + V
Sbjct: 61 NIVGSQRTVAQLTV 74
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 41.7 bits (98), Expect = 4e-05
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQANATDSGEYRCVA 202
G D+ I C P P + W K +++ N + I L I +D G+Y C A
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRIC--IWPDGSLEILNVTKSDEGKYTCFA 58
Query: 203 SN 204
N
Sbjct: 59 EN 60
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQANATDSGEY 198
GS + + C G P P + W KDG+ + + + + L + +DSG+Y
Sbjct: 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRI-GGYKVRKKKWTLILESVVPSDSGKY 66
Query: 199 RCVASNSYTS 208
C+ N Y S
Sbjct: 67 TCIVENKYGS 76
Score = 28.5 bits (64), Expect = 2.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGR 39
L ++ V P G YTC N G
Sbjct: 53 LILESVVPSDSGKYTCIVENKYGS 76
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 40.8 bits (95), Expect = 7e-05
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--TESNRLHINQANATDSGEYRCVASNS 205
++ C G P P++ W+KD ++ + RI S L I + +D G+Y CVA+NS
Sbjct: 2 TMLCAASGNPDPEITWFKDFLPVDTTS-NGRIKQLRSGALQIENSEESDQGKYECVATNS 60
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 44.9 bits (106), Expect = 8e-05
Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 17/226 (7%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
++ E+ G+ + + + D +E +N ++V+L KIA +IR L + E
Sbjct: 208 RVMEILGIYSEIGSTQ---IVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSE 264
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
E++ GSS MP KVNP E + ++ + + G H E ++ +
Sbjct: 265 YFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEYEAGVTWH-ERDLTNSALERF 323
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLH--ESLM---LVTALNP-----HIGY 513
+ ++ D + +S ++ E+ I R L +S+M +V AL +
Sbjct: 324 TIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAH 383
Query: 514 DKAAKIAKTAHKEGTTLKVAALKLG---YLTEEEFNKWVVPEDMLG 556
+ + + A G +LK + ++ G Y+ E+ ++ + P + +G
Sbjct: 384 EFVRRASMEARSNGKSLKSSLIEAGILKYIDEKTLDRAMDPANFIG 429
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 44.7 bits (106), Expect = 1e-04
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 345 IAELTGLPFKSA-PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
+AEL G F + N +A++ D ++E+ + V L + A D+ ++G G
Sbjct: 210 LAELLG--FDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FGF 264
Query: 404 LSLP-ENEPGSSIMPGKVNPTQCEALTMVAAQVMGN 438
+ LP E GSSIMP K NP E + +V GN
Sbjct: 265 VELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGN 300
>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR).
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR). The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at
the Ig-like domains. VEGF-A is important to the growth
and maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-2 is a
major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A.
VEGFR-1 may play an inhibitory part in these processes
by binding VEGF and interfering with its interaction
with VEGFR-2. VEGFR-1 has a signaling role in mediating
monocyte chemotaxis. VEGFR-2 and -1 may mediate a
chemotactic and a survival signal in hematopoietic stem
cells or leukemia cells. VEGFR-3 has been shown to be
involved in tumor angiogenesis and growth.
Length = 71
Score = 40.5 bits (95), Expect = 1e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206
+ +P V YP P++ WYK+G++I + + L I D+G Y V +N
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQ 58
Query: 207 TSDENAVTI 215
E +T
Sbjct: 59 AKLEKRLTF 67
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2).
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like
domain of M-protein (also known as myomesin-2).
M-protein is a structural protein localized to the
M-band, a transverse structure in the center of the
sarcomere, and is a candidate for M-band bridges.
M-protein is modular consisting mainly of repetitive
IG-like and fibronectin type III (FnIII) domains, and
has a muscle-type specific expression pattern. M-protein
is present in fast fibers.
Length = 92
Score = 40.7 bits (95), Expect = 2e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRIT-ESNR---LHINQANATDSGEY 198
G +++ C V G P P+V W+K+ Q IE ++ HY + E + L I + DSG+Y
Sbjct: 16 GKTLNLTCTVFGNPDPEVIWFKNDQDIELSE--HYSVKLEQGKYASLTIKGVTSEDSGKY 73
Query: 199 RCVASNSYTSDENAVTIRV 217
N Y + VT+ V
Sbjct: 74 SINVKNKYGGETVDVTVSV 92
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 39.9 bits (93), Expect = 2e-04
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASN 204
+ + C +G P P+V W + DG + N + +N+ L ++ +D GEY C A N
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT---KKLNNNKTLQLDNVLESDDGEYVCTAEN 57
Query: 205 SYTSDENAVTIRVE 218
S S + T+ VE
Sbjct: 58 SEGSARHHYTVTVE 71
>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like:
domain similar to the second immunoglobulin (Ig)-like
domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha
and IL-1 beta are cytokines which participate in the
regulation of inflammation, immune responses, and
hematopoiesis. These cytokines bind to the IL-1 receptor
type 1 (IL1R1), which is activated on additional
association with an accessory protein, IL1RAP. IL-1 also
binds the type II (IL1R2) represented in this group.
Mature IL1R2 consists of three IG-like domains, a
transmembrane domain, and a short cytoplasmic domain. It
lacks the large cytoplasmic domain of Mature IL1R1, and
does not initiate signal transduction. A naturally
occurring cytokine IL-1RA (IL-1 receptor antagonist) is
widely expressed and binds to IL-1 receptors, inhibiting
the binding of IL-1 alpha and IL-1 beta.
Length = 95
Score = 40.5 bits (95), Expect = 2e-04
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 160 QVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
++ WYKD +++ D Y + S LHI + DSG Y C ++ + +T ++
Sbjct: 31 ELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIK 90
>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of
semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like
domain in semaphorins. Semaphorins are transmembrane
protein that have important roles in a variety of
tissues. Functionally, semaphorins were initially
characterized for their importance in the development of
the nervous system and in axonal guidance. Later they
have been found to be important for the formation and
functioning of the cardiovascular, endocrine,
gastrointestinal, hepatic, immune, musculoskeletal,
renal, reproductive, and respiratory systems.
Semaphorins function through binding to their receptors
and transmembrane semaphorins also serves as receptors
themselves. Although molecular mechanism of semaphorins
is poorly understood, the Ig-like domains may involve in
ligand binding or dimerization.
Length = 89
Score = 39.7 bits (93), Expect = 2e-04
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 135 TLETQVFGV-GSDISIPCDVDGYPIPQVFWYKDGQVI---ENDGVHYRITESNRLHINQA 190
E V V G+ + + C + V W G + E +TE L I
Sbjct: 1 AEEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLL-IRSV 58
Query: 191 NATDSGEYRCVA 202
+ D+G Y C +
Sbjct: 59 SPADAGVYTCQS 70
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 43.5 bits (103), Expect = 3e-04
Identities = 58/216 (26%), Positives = 86/216 (39%), Gaps = 48/216 (22%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A +A L + P D + E + AL +A +L KIA D+ L + +
Sbjct: 212 AQALAAELQLALPALPWH----TQRDRIAEFASALGLLAGTLGKIARDVSLLM---QTEV 264
Query: 402 GELSLP--ENEPGSSIMPGKVNPTQCEAL------------TMVAAQVMGNHVAVTIGGS 447
GE+ P + GSS MP K NP C A+ T+ AA + A+ GG
Sbjct: 265 GEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLFAAMPQEHERAL--GGW 322
Query: 448 NGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGI-------VANEENIHRL-LHE 499
+ ++ L + +A A A + V G+ AN + H L L E
Sbjct: 323 HAEWD-----------TLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAE 371
Query: 500 SLMLVTALNPHIGYDKAAKI----AKTAHKEGTTLK 531
++ML AL IG A + +K A EG L+
Sbjct: 372 AVML--ALADRIGRLDAHHLVEQASKRAVAEGRHLR 405
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 39.6 bits (92), Expect = 3e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEN-----DGVHYRITESNR---LHINQANATDSGEY 198
I++ C+ G PIP + W + I + DG H + R L + TD+GEY
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDG-HIVVRSHARVSSLTLKYIQYTDAGEY 78
Query: 199 RCVASNSYTSDENAVTIRV 217
C ASN+ D ++ + V
Sbjct: 79 LCTASNTIGQDSQSMYLEV 97
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins. Contactins
are neural cell adhesion molecules and are comprised of
six Ig domains followed by four fibronectin type
III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal activity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 39.4 bits (92), Expect = 3e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 140 VFGVGSD---ISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHINQANATDS 195
+F SD +S+ C G P P W +G I+++ Y + N + N + A D+
Sbjct: 12 IFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDA 71
Query: 196 GEYRCVASNSY 206
G Y+C+ASN
Sbjct: 72 GRYQCLASNIV 82
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin.
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in
myotilin, palladin, and myopalladin. Myotilin,
palladin, and myopalladin function as scaffolds that
regulate actin organization. Myotilin and myopalladin
are most abundant in skeletal and cardiac muscle;
palladin is ubiquitously expressed in the organs of
developing vertebrates and plays a key role in cellular
morphogenesis. The three family members each interact
with specific molecular partners: all three bind to
alpha-actinin; in addition, palladin also binds to
vasodilator-stimulated phosphoprotein (VASP) and ezrin,
myotilin binds to filamin and actin, and myopalladin
also binds to nebulin and cardiac ankyrin repeat protein
(CARP).
Length = 75
Score = 39.0 bits (91), Expect = 4e-04
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVA 202
+ + C V P PQ+FW K+ +++ + + + N L I AN D+G Y A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 203 SN 204
N
Sbjct: 61 VN 62
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 42.5 bits (101), Expect = 5e-04
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 346 AELTGLPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
AEL G F N +A++ D ++E A + V L ++A D+ ++ G +
Sbjct: 191 AELLG--FDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF---GFV 245
Query: 405 SLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV--TIGG--SNGHFELNVFKPL 459
LP+ GSSIMP K NP E + A +V+G + T+ G + +L K
Sbjct: 246 ELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEP 305
Query: 460 I---VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTAL 507
+ V ++ S+RL+ +S + N E + T L
Sbjct: 306 LFDAVDTLIASLRLLTG--------VISTLTVNPERMREAAEAGFSTATDL 348
>gnl|CDD|143229 cd05752, Ig1_FcgammaR_like, Frst immunoglobulin (Ig)-like domain of
Fcgamma-receptors (FcgammaRs) and similar proteins.
Ig1_FcgammaR_like: domain similar to the first
immunoglobulin (Ig)-like domain of Fcgamma-receptors
(FcgammaRs). Interactions between IgG and FcgammaR are
important to the initiation of cellular and humoral
response. IgG binding to FcgammaR leads to a cascade of
signals and ultimately to functions such as
antibody-dependent-cellular-cytotoxicity (ADCC),
endocytosis, phagocytosis, release of inflammatory
mediators, etc. FcgammaR has two Ig-like domains. This
group also contains FcepsilonRI, which binds IgE with
high affinity.
Length = 78
Score = 38.5 bits (90), Expect = 5e-04
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 151 CDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
C+ P WY +G+++E YRI +A DSGEYRC S SD
Sbjct: 22 CNGFNSPEQNSTQWYHNGKLLETTTNSYRI---------RAANNDSGEYRCQTQGSSLSD 72
>gnl|CDD|143230 cd05753, Ig2_FcgammaR_like, Second immunoglobulin (Ig)-like domain
of Fcgamma-receptors (FcgammaRs) and similar proteins.
Ig2_FcgammaR_like: domain similar to the second
immunoglobulin (Ig)-like domain of Fcgamma-receptors
(FcgammaRs). Interactions between IgG and FcgammaR are
important to the initiation of cellular and humoral
response. IgG binding to FcgammaR leads to a cascade of
signals and ultimately to functions such as
antibody-dependent-cellular-cytotoxicity (ADCC),
endocytosis, phagocytosis, release of inflammatory
mediators, etc. FcgammaR has two Ig-like domains. This
group also contains FcepsilonRI, which binds IgE with
high affinity.
Length = 83
Score = 38.9 bits (91), Expect = 5e-04
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 157 PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRC---VASNSYTSDENAV 213
P+ +V +Y+DG+ Y ++ L I QA +DSG Y C + S Y+S+ ++
Sbjct: 28 PVYKVTYYRDGK-----AKKYS-HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI 81
Query: 214 TI 215
T+
Sbjct: 82 TV 83
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 39.1 bits (91), Expect = 6e-04
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHI-----NQANAT 193
G ++ C +G P P + W K+GQ +E D H + S L + +
Sbjct: 15 KGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRS 74
Query: 194 DSGEYRCVASNS 205
D G Y CVA NS
Sbjct: 75 DEGVYVCVAHNS 86
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 75
Score = 38.4 bits (89), Expect = 7e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---------INQANATDSGEYR 199
+ C G+P PQ+ W KDG G + R+H I D+G Y
Sbjct: 3 LECAATGHPTPQIAWQKDG------GTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYS 56
Query: 200 CVASNS 205
C A N+
Sbjct: 57 CTAQNT 62
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 41.4 bits (98), Expect = 8e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
D E L +A +L KIA +IR L R + E+ P + + GSS MP K NP
Sbjct: 214 DRHAEYLSTLALIASTLEKIATEIRHLQ---RTEVLEVEEPFSKGQKGSSAMPHKRNPIL 270
Query: 425 CEALTMVA 432
E + +A
Sbjct: 271 SENICGLA 278
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 41.6 bits (98), Expect = 0.001
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 357 PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN-EPGSSI 415
N +A++ D ++E A + A+ L ++ + AS G ++ + GSSI
Sbjct: 237 RNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEE---FGFVTPSDAVSTGSSI 293
Query: 416 MPGKVNPTQCEALTMVAAQVMGNHVAVT 443
MP K NP E + +A+V+G+ V V
Sbjct: 294 MPQKKNPDPMELVRGKSARVIGDLVTVL 321
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal
peptide, three extracellular Ig-like modules, a
transmembrane segment, and a short intracellular domain.
FGFRL1 is expressed preferentially in skeletal tissues.
Similar to FGF receptors, the expressed protein
interacts specifically with heparin and with FGF2.
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 82
Score = 37.9 bits (88), Expect = 0.001
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
VGS + + C G P P + W KD + + + + L + DSG+Y C
Sbjct: 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHV 67
Query: 203 SN 204
SN
Sbjct: 68 SN 69
Score = 29.8 bits (67), Expect = 0.86
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGR 39
L++K ++PE G YTC N G
Sbjct: 50 LSLKNLKPEDSGKYTCHVSNRAGE 73
>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found
in neuregulin (NRG)-1. Ig_Pro_neuregulin-1:
immunoglobulin (Ig)-like domain found in neuregulin
(NRG)-1. There are many NRG-1 isoforms which arise from
the alternative splicing of mRNA. NRG-1 belongs to the
neuregulin gene family, which is comprised of four
genes. This group represents NRG-1. NRGs are signaling
molecules, which participate in cell-cell interactions
in the nervous system, breast, and heart, and other
organ systems, and are implicated in the pathology of
diseases including schizophrenia, multiple sclerosis,
and breast cancer. The NRG-1 protein binds to and
activates the tyrosine kinases receptors ErbB3 and
ErbB4, initiating signaling cascades. NRG-1 has multiple
functions; for example, in the brain it regulates
various processes such as radial glia formation and
neuronal migration, dendritic development, and
expression of neurotransmitters receptors; in the
peripheral nervous system NRG-1 regulates processes such
as target cell differentiation, and Schwann cell
survival.
Length = 76
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 156 YPIPQVFWYKDGQVI------ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
YP + W+K+G+ I +N + +S+ L I++A+ D+GEY+C+ S+ +D
Sbjct: 11 YPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70
Query: 210 ENAVTI 215
+
Sbjct: 71 SVTANV 76
>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_3: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 81
Score = 37.1 bits (86), Expect = 0.002
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEN-----DGVHYRITESN--RLHINQANATDSG 196
G S CDV G P P++ W K EN + V + +N +L I A D+G
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60
Query: 197 EYRCVASNS 205
Y C A NS
Sbjct: 61 LYTCTARNS 69
>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk
receptor TrkB. TrkB_d5: the fifth domain of Trk
receptor TrkB, this is an immunoglobulin (Ig)-like
domain which binds to neurotrophin. The Trk family of
receptors are tyrosine kinase receptors, which mediate
the trophic effects of the neurotrophin Nerve growth
factor (NGF) family. The Trks are activated by
dimerization, leading to autophosphorylation of
intracellular tyrosine residues, and triggering the
signal transduction pathway. TrkB shares significant
sequence homology and domain organization with TrkA, and
TrkC. The first three domains are leucine-rich domains.
The fourth and fifth domains are Ig-like domains playing
a part in ligand binding. TrKB is recognized by
brain-derived neurotrophic factor (BDNF) and
neurotrophin (NT)-4. In some cell systems NT-3 can
activate TrkA and TrkB receptors. TrKB transcripts are
found throughout multiple structures of the central and
peripheral nervous systems.
Length = 79
Score = 36.7 bits (85), Expect = 0.003
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR------LHINQANATDSGEYRCV 201
IP V G P P + W+ +G ++ E++ + +I N L ++ ++G Y V
Sbjct: 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLV 62
Query: 202 ASNSYTSDENAVT 214
A N Y DE V+
Sbjct: 63 AKNEYGEDEKNVS 75
>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR) and similar proteins.
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR). In addition to SCFR
this group also includes the fourth Ig domain of
platelet-derived growth factor receptors (PDGFR), alpha
and beta, the fourth Ig domain of macrophage colony
stimulating factor (M-CSF), and the Ig domain of the
receptor tyrosine kinase KIT. SCFR and the PDGFR alpha
and beta have similar organization: an extracellular
component having five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. SCFR and its ligand SCF are
critical for normal hematopoiesis, mast cell
development, melanocytes and gametogenesis. SCF binds to
the second and third Ig-like domains of SCFR, this
fourth Ig-like domain participates in SCFR dimerization,
which follows ligand binding. Deletion of this fourth
SCFR_Ig-like domain abolishes the ligand-induced
dimerization of SCFR and completely inhibits signal
transduction. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta, binds
only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta,
are essential for normal development.
Length = 101
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 132 VNITLE---TQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHY--RITESN-- 183
+N++ E T +G ++++ +V+ YP P + W D + + N ES
Sbjct: 3 INLSPEQNTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYR 62
Query: 184 ---RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + +++G Y +ASNS ++T +
Sbjct: 63 YVSELKLVRLKESEAGTYTFLASNS--DASKSLTFELY 98
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 35.8 bits (83), Expect = 0.004
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVA 202
G + C+ +G P P + W +G IE R L ++ D+ Y+C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 203 SNSY 206
SN +
Sbjct: 61 SNVH 64
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 36.0 bits (83), Expect = 0.006
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANAT--DSGE 197
V G +I C +G P+P+V W G ++ T + ++ +N T
Sbjct: 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTT 70
Query: 198 YRCVASNSYTSDENAVTIRV 217
C A N +V + V
Sbjct: 71 VTCTAENPVGQANVSVQVTV 90
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 36.4 bits (84), Expect = 0.007
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 24/96 (25%)
Query: 143 VGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR----------------- 184
G +++PC V+WYK + + + +T +
Sbjct: 15 EGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNG 74
Query: 185 ------LHINQANATDSGEYRCVASNSYTSDENAVT 214
L I+ +DSG Y C SN A T
Sbjct: 75 SKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGT 110
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 35.6 bits (82), Expect = 0.007
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGV--HYRITESN-RLHINQANATDSGEYRCVASNSYT 207
C G P P + W K+G+ + + Y++ + L + +D G Y CV N Y
Sbjct: 16 CPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 75
Query: 208 SDENAVTIRV 217
S + + V
Sbjct: 76 SINHTYHLDV 85
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-2 (also known as
OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-2 (also known as OCAM/mamFas II and
RNCAM). NCAM-2 is organized similarly to NCAM ,
including five N-terminal Ig-like domains and two
fibronectin type III domains. NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE), and may function like NCAM, as an
adhesion molecule.
Length = 98
Score = 35.7 bits (82), Expect = 0.008
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 144 GSDISIPCDVDGYPIPQVFWYK--------------DGQVIENDGVHYRITESNRLHINQ 189
++ C +G PIP++ W + DG+ IE G H + LHI
Sbjct: 16 NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGR-IEVKGQH----GESSLHIKD 70
Query: 190 ANATDSGEYRCVASN 204
+DSG Y C A++
Sbjct: 71 VKLSDSGRYDCEAAS 85
>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds
two members of the VEGF family (VEGF-C and -D) and is
involved in tumor angiogenesis and growth.
Length = 67
Score = 34.9 bits (80), Expect = 0.008
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ +P V YP P+ WYKDG++I + ++ + L I +G Y V NS
Sbjct: 1 VKLPVKVAAYPPPEFQWYKDGKLIS-----GKHSQHS-LQIKDVTEASAGTYTLVLWNS 53
>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig4_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 90
Score = 35.3 bits (81), Expect = 0.009
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDG--------QVIENDGVHYRITESNRLHINQANATDS 195
G ++ C+ G P P +FW K+G Q ++ + ++++ L I +D
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSS-RFSVSQTGDLTITNVQRSDV 59
Query: 196 GEYRCVASN 204
G Y C N
Sbjct: 60 GYYICQTLN 68
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 38.7 bits (90), Expect = 0.009
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
+A L G + APN +A+A+ D ++ A+ ++ L ++A D++ +
Sbjct: 618 FVARLLGFE-QPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTRE---FAL 673
Query: 404 LSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462
+SLP+ GSS++P K NP E + A V G + + F N F+
Sbjct: 674 VSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFS-NSFE---AG 729
Query: 463 NVLRSIRLIADSATAFTDKC------VSGIVANEENIHRLLHESLMLVTAL 507
+ + IA + A D + G+ A++ + L + + TA+
Sbjct: 730 SPMNG--PIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAV 778
>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1.
Ig1_Contactin-1: First Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 93
Score = 35.3 bits (81), Expect = 0.012
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206
+S+ C P P W K+ I+ Y + N + N D+G Y C+ SN Y
Sbjct: 22 VSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIY 81
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 34.4 bits (79), Expect = 0.016
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 144 GSDISIPCDVDGYPIPQVFW-YKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
G ++ C G P P + W DG++I N + ++ L I D+G + C+A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSS-RTLVYDNGTLDILITTVKDTGSFTCIA 59
Query: 203 SN 204
SN
Sbjct: 60 SN 61
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 37.0 bits (86), Expect = 0.019
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A++A+ GL AP + + D + + + L+ V SL K DI +A
Sbjct: 212 RARLAKRLGLE--DAP---QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG---- 262
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMV----AAQVMGNHVA 441
E+SL GSS MP K NP E L + A QV G H A
Sbjct: 263 DEISLSGGG-GSSAMPHKQNPVAAETLVTLARFNATQVSGLHQA 305
>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin.
Ig6_Contactin_like: Sixth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of neur
onal act ivity in the rat auditory system. Contactin-5
is highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 85
Score = 34.4 bits (79), Expect = 0.021
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 163 WYKDGQVI--ENDGVHYRITESNR----LHINQANATDSGEYRCVASNSYTSDENAVTIR 216
W +G I + DG HYR L I A +G+Y C A S + +
Sbjct: 21 WSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80
Query: 217 VEG 219
V G
Sbjct: 81 VRG 83
>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV). IgV:
Immunoglobulin variable domain (IgV). Members of the IgV
family are components of immunoglobulin (Ig) and T cell
receptors. The basic structure of Ig molecules is a
tetramer of two light chains and two heavy chains linked
by disulfide bonds. In Ig, each chain is composed of one
variable domain (IgV) and one or more constant domains
(IgC); these names reflect the fact that the variability
in sequences is higher in the variable domain than in
the constant domain. Within the variable domain, there
are regions of even more variability called the
hypervariable or complementarity-determining regions
(CDRs) which are responsible for antigen binding. A
predominant feature of most Ig domains is the disulfide
bridge connecting 2 beta-sheets with a tryptophan
residue packed against the disulfide bond.
Length = 105
Score = 34.6 bits (80), Expect = 0.024
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 143 VGSDISIPCDVDGYPI-PQVFWY--KDGQVIE------NDGVHYRITESNR--------- 184
G +++ C G +FWY K G+ E ++G Y R
Sbjct: 5 EGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSK 64
Query: 185 ----LHINQANATDSGEYRCVASNSYTSDEN 211
L I+ DS Y C S S + +
Sbjct: 65 SSFTLTISSLQPEDSAVYYCAVSLSGGTYKL 95
>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor 2 (FGFR2).
Ig3_FGFR-2-like; domain similar to the third
immunoglobulin (Ig)-like domain of human fibroblast
growth factor receptor 2 (FGFR2). Fibroblast growth
factors (FGFs) participate in morphogenesis,
development, angiogenesis, and wound healing. These
FGF-stimulated processes are mediated by four FGFR
tyrosine kinases (FGRF1-4). FGFRs are comprised of an
extracellular portion consisting of three Ig-like
domains, a transmembrane helix, and a cytoplasmic
portion having protein tyrosine kinase activity. The
highly conserved Ig-like domains 2 and 3, and the linker
region between D2 and D3 define a general binding site
for FGFs. FGFR2 is required for male sex determination.
Length = 90
Score = 34.1 bits (78), Expect = 0.025
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 144 GSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHIN 188
GS + C V P + W K DG V++ GV+ E L++
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60
Query: 189 QANATDSGEYRCVASNS 205
D+GEY C+A NS
Sbjct: 61 NVTFEDAGEYTCLAGNS 77
>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1 and similar
proteins. Ig1_NCAM-1 like: first immunoglobulin
(Ig)-like domain of neural cell adhesion molecule
NCAM-1. NCAM-1 plays important roles in the development
and regeneration of the central nervous system, in
synaptogenesis and neural migration. NCAM mediates
cell-cell and cell-substratum recognition and adhesion
via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 92
Score = 34.0 bits (78), Expect = 0.028
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQ---------VIENDGVHYRI 179
++V+I VG C V G P + W+ +G+ V++ND V
Sbjct: 1 LQVDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDV---- 55
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ L I AN D+G Y+CVA+++ ++ A T+ ++
Sbjct: 56 --RSTLTIYNANIEDAGIYKCVATDAKGTESEA-TVNLK 91
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 36.4 bits (84), Expect = 0.032
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
+++EL G+ + + + +S ++++AV L +I DI G
Sbjct: 205 QMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN-----GI 259
Query: 404 LSLP-ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTI 444
+++P E GSS+MP K NP E +AA+ + V I
Sbjct: 260 ITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESIS--VLSFI 299
>gnl|CDD|143184 cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) variable (V)
domain of T-cell receptor (TCR) alpha chain and similar
proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable
domain of the alpha chain of alpha/beta T-cell antigen
receptors (TCRs). TCRs mediate antigen recognition by T
lymphocytes, and are composed of alpha and beta, or
gamma and delta, polypeptide chains with variable (V)
and constant (C) regions. This group represents the
variable domain of the alpha chain of TCRs and also
includes the variable domain of delta chains of TCRs.
Alpha/beta TCRs recognize antigen as peptide fragments
presented by major histocompatibility complex (MHC)
molecules. The variable domain of TCRs is responsible
for antigen recognition, and is located at the
N-terminus of the receptor. Gamma/delta TCRs recognize
intact protein antigens; they recognize proteins
antigens directly and without antigen processing, and
MHC independently of the bound peptide.
Length = 109
Score = 34.1 bits (79), Expect = 0.037
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK---------------DGQVIENDGVHYRITESNR--- 184
G ++++ C+ +FWY+ +G+ E + +S +
Sbjct: 12 EGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSS 71
Query: 185 LHINQANATDSGEYRCVASNSYTSD 209
LHI+ A +DS Y C S S +
Sbjct: 72 LHISAAQLSDSAVYFCALSESGGTG 96
>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain
of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin
(Ig)-like domain of myotilin. Mytolin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to the latter family contain multiple Ig-like domains
and function as scaffolds, modulating actin
cytoskeleton. Myotilin is most abundant in skeletal and
cardiac muscle, and is involved in maintaining sarcomere
integrity. It binds to alpha-actinin, filamin and actin.
Mutations in myotilin lead to muscle disorders.
Length = 75
Score = 33.4 bits (76), Expect = 0.039
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQANATDSGEYRCVA 202
+ + C + P P++FW ++ ++++ + + + N L I N D+G Y A
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60
Query: 203 SN 204
N
Sbjct: 61 VN 62
>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM) and similar
proteins. Ig6_L1-CAM_like: domain similar to the sixth
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
NrCAM [Ng(neuronglia)CAM-related cell adhesion
molecule], which is primarily expressed in the nervous
system, and human neurofascin.
Length = 77
Score = 32.7 bits (75), Expect = 0.052
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQV--IENDGVHYRITESNR-----LHINQANATDS--GE 197
I I C+ G P P W ++G E D R+T + + GE
Sbjct: 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDP---RVTMKPDSGTLVIDNMNGGRAEDYEGE 57
Query: 198 YRCVASNSY 206
Y+C ASN
Sbjct: 58 YQCYASNEL 66
>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-2. Ig1_NCAM-2:
first immunoglobulin (Ig)-like domain of neural cell
adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2
is organized similarly to NCAM , including five
N-terminal Ig-like domains and two fibronectin type III
domains. NCAM-2 is differentially expressed in the
developing and mature olfactory epithelium (OE), and may
function like NCAM, as an adhesion molecule.
Length = 92
Score = 33.1 bits (75), Expect = 0.064
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQ--------VIENDGVHYRIT 180
++V+I+L VG C G P + WY G+ V++ +GV R+T
Sbjct: 1 LQVSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLT 59
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
I AN D+G YRC A+++ + A +
Sbjct: 60 ------IYNANIEDAGIYRCQATDAKGQTQEATVV 88
>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of
platelet-derived growth factor receptor (PDGFR) alpha.
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like
domain of platelet-derived growth factor receptor
(PDGFR) alpha. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta (not
included in this group) binds only to PDGF-B. PDGF alpha
is organized as an extracellular component having five
Ig-like domains, a transmembrane segment, and a
cytoplasmic portion having protein tyrosine kinase
activity. In mice, PDGFR alpha and PDGFR beta are
essential for normal development.
Length = 101
Score = 32.9 bits (75), Expect = 0.090
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 152 DVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNR----------LHINQANATDSGEYRC 200
+V+ YP PQ+ W KD + +IEN IT S L + +A DSG Y
Sbjct: 26 EVEAYPPPQIRWLKDNRTLIENLTE---ITTSEHNVQETRYVSKLKLIRAKEEDSGLYTA 82
Query: 201 VASN 204
+A N
Sbjct: 83 LAQN 86
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 35.3 bits (81), Expect = 0.090
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 344 KIAELTGLPFKSA-PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
++A+L G F + N ++A+A D L+EVS L + + + +D LA+ G+
Sbjct: 218 RVADLLG--FTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGI- 274
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV 442
++ P + SSIMP K NP E + + +G V
Sbjct: 275 TVARPYVQI-SSIMPQKRNPVSIEHARAITSSALGEAFTV 313
>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain
of palladin. Ig_Palladin_C: C-terminal immunoglobulin
(Ig)-like domain of palladin. Palladin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to this family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Palladin binds to alpha-actinin ezrin,
vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP,
mDia interacting protein), and Src. Palladin also binds
F-actin directly, via its Ig3 domain. Palladin is
expressed as several alternatively spliced isoforms,
having various combinations of Ig-like domains, in a
cell-type-specific manner. It has been suggested that
palladin's different Ig-like domains may be specialized
for distinct functions.
Length = 75
Score = 32.3 bits (73), Expect = 0.094
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQANATDSGEYRCVA 202
+ + C V G P PQ+FW K+ + + ++ + + N L I A D+G Y A
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 203 SN 204
N
Sbjct: 61 KN 62
>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like
domain of human neurofascin (NF).
Ig6_hNeurofascin_like: the sixth immunoglobulin
(Ig)-like domain of human neurofascin (NF). NF belongs
to the L1 subfamily of cell adhesion molecules (CAMs)
and is comprised of an extracellular region having six
Ig-like domains and five fibronectin type III domains, a
transmembrane region, and a cytoplasmic domain. NF has
many alternatively spliced isoforms having different
temporal expression patterns during development. NF
participates in axon subcellular targeting and synapse
formation, however little is known of the functions of
the different isoforms.
Length = 77
Score = 31.9 bits (72), Expect = 0.13
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATD----SGEYR 199
I I C+ G P+P W ++G+ N R++ R L I+ + GEY+
Sbjct: 1 IIIECEAKGNPVPTFQWTRNGKFF-NVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQ 59
Query: 200 CVASNSY-TSDENAVTIR 216
C A N+ T+ N + ++
Sbjct: 60 CFARNNLGTALSNKILLQ 77
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 34.6 bits (80), Expect = 0.13
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 351 LPFKSAP-NKFEALAAHDALVEVSGALNTVAVSLM---KIANDIRFLASGPRCGLGELSL 406
L F SA N ++++ D ++E+ L+ ++S++ + A D+ F SG G ELS
Sbjct: 216 LGFASATRNSLDSVSDRDHVLEL---LSDASISMVHLSRFAEDLIFFNSG-EAGFVELS- 270
Query: 407 PENEPGSSIMPGKVNPTQCE 426
GSS+MP K NP E
Sbjct: 271 DRVTSGSSLMPQKKNPDALE 290
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 31.8 bits (72), Expect = 0.14
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 151 CDVDGYPIPQVFW-YKDGQVIENDGVHYRITESN---------RLHINQANATDSGEYRC 200
C +GYP P + W + G+ H L I DSG Y C
Sbjct: 5 CSAEGYPPPTIVWKHSKGRGHPQ---HTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLC 61
Query: 201 VASNSYTSD 209
SN +D
Sbjct: 62 KVSNDVGAD 70
>gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the
class IV semaphorin Sema4D. Ig_Sema4D_like;
Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a
Class IV semaphorin. Semaphorins are classified based on
structural features additional to the Sema domain.
Sema4D has extracellular Sema and Ig domains, a
transmembrane domain, and a short cytoplasmic domain.
Sema4D plays a part in the development of GABAergic
synapses. Sema4D in addition is an immune semaphorin. It
is abundant on resting T cells; its expression is weak
on resting B cells and antigen presenting cells (APCs),
but is upregulated by various stimuli. The receptor used
by Sema4D in the immune system is CD72. Sem4D enhances
the activation of B cells and DCs through binding CD72,
perhaps by reducing CD72s inhibitory signals. The
receptor used by Sema4D in the non-lymphatic tissues is
plexin-B1. Sem4D is anchored to the cell surface but its
extracellular domain can be released from the cell
surface by a metalloprotease-dependent process. Sem4D
may mediate its effects in its membrane bound form,
and/or its cleaved form.
Length = 87
Score = 32.1 bits (73), Expect = 0.14
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRC 200
F +G++ + C + +V W DG+V+ + Y + L I A+ D+G Y+C
Sbjct: 8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLL-IFNASEADAGRYQC 65
Query: 201 VA 202
++
Sbjct: 66 LS 67
>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1.
Ig5_Contactin-1: fifth Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 31.5 bits (71), Expect = 0.15
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G + I C P P+ W K +++ N I + L I D G Y C A
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN-NSRISIWDDGSLEILNITKLDEGSYTCFAE 59
Query: 204 NS 205
N+
Sbjct: 60 NN 61
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 34.4 bits (79), Expect = 0.19
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 350 GLPFKSAP-NKFEALAAHDALVEVSGALNTVAVSLM---KIANDIRFLASGPRCGLGELS 405
L F+ A N ++++ D ++E+ ++ ++S++ ++A D+ F SG G EL+
Sbjct: 215 NLGFRRATRNSLDSVSDRDHVMEL---MSVASISMLHLSRLAEDLIFYNSG-ESGFIELA 270
Query: 406 LPENEPGSSIMPGKVNPTQCEALTMVAAQVMG 437
GSS+MP K NP E + +V G
Sbjct: 271 -DTVTSGSSLMPQKKNPDALELIRGKTGRVYG 301
>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig3_FGFR:
third immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between
D2 and D3 define a general binding site for FGFs.
Length = 90
Score = 31.6 bits (72), Expect = 0.19
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 144 GSDISIPCDVDGYPIPQVFWYK-----------DG----QVIENDGVHYRITESNRLHIN 188
GSD+ C V P + W K DG V++ G++ ES L++
Sbjct: 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLR 60
Query: 189 QANATDSGEYRCVASNS 205
+ D+GEY C+A NS
Sbjct: 61 NVSFDDAGEYTCLAGNS 77
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. It may
play a part in the neuronal processes of neurite
outgrowth, axon guidance and fasciculation, and neuronal
migration. The first four Ig domains form the
intermolecular binding fragment, which arranges as a
compact U-shaped module by contacts between IG domains 1
and 4, and domains 2 and 3. The different contactins
show different expression patterns in the central
nervous system. During development and in adulthood,
contactin-2 is transiently expressed in subsets of
central and peripheral neurons. Contactin-2 is also
expressed in retinal amacrine cells in the developing
chick retina, corresponding to the period of formation
and maturation of AC processes.
Length = 94
Score = 31.8 bits (72), Expect = 0.20
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNRLHINQANATDSGEYRCVASN 204
+++ C P W +G I+ Y + N + N A D+G Y+C+A N
Sbjct: 22 VTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80
>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM:
the eight immunoglobulin (Ig) domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 88
Score = 31.5 bits (71), Expect = 0.21
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-------NRLHINQANATDSG 196
G + C G V W K+ ++I + Y ++ + L I DSG
Sbjct: 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSG 60
Query: 197 EYRCVASNSYTSDENAVTIRVE 218
+ C A NSY D + + V+
Sbjct: 61 FFSCHAINSYGEDRGIIQLTVQ 82
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 31.3 bits (71), Expect = 0.21
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCV 201
G ++++ C G P+PQ+ W K DG + + L I D G Y C
Sbjct: 15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AEISMSGAVLKIPNIQFEDEGTYECE 71
Query: 202 ASNS 205
A N
Sbjct: 72 AENI 75
>gnl|CDD|143181 cd04980, IgV_L_kappa, Immunoglobulin (Ig) light chain, kappa
type, variable (V) domain. IgV_L_kappa: Immunoglobulin
(Ig) light chain, kappa type, variable (V) domain. The
basic structure of Ig molecules is a tetramer of two
light chains and two heavy chains linked by disulfide
bonds. In Ig, each chain is composed of one variable
domain (IgV) and one or more constant domains (IgC);
these names reflect the fact that the variability in
sequences is higher in the variable domain than in the
constant domain. There are five types of heavy chains
(alpha, gamma, delta, epsilon, and mu), which determine
the type of immunoglobulin: IgA, IgG, IgD, IgE, and
IgM, respectively. In higher vertebrates, there are two
types of light chain, designated kappa and lambda,
which seem to be functionally identical, and can
associate with any of the heavy chains.
Length = 106
Score = 31.3 bits (71), Expect = 0.34
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI RVEPE Y CQ Y
Sbjct: 73 LTISRVEPEDAAVYYCQQYG 92
>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2) and similar proteins. Ig5_KIRREL3-like: domain
similar to the fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2). This protein has five Ig-like domains, one
transmembrane domain, and a cytoplasmic tail. Included
in this group is mammalian Kirrel (Neph1), Kirrel2
(Neph3), and Drosophila RST (irregular chiasm
C-roughest) protein. These proteins contain multiple Ig
domains, have properties of cell adhesion molecules, and
are important in organ development.
Length = 98
Score = 30.8 bits (70), Expect = 0.37
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 134 ITLETQVFGV-GSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVH-YRITESNR------ 184
IT E + + G + C + P P ++ W +E+ Y +
Sbjct: 5 ITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLS 64
Query: 185 -LHINQANATD-SGEYRCVASNSYTSD 209
L I+ +D Y C A NS+ S
Sbjct: 65 TLTISNTQESDFQTSYNCTAWNSFGSG 91
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 30.9 bits (70), Expect = 0.41
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 151 CDVDGYPIPQVFWYKDGQVIE--NDGVHYRITE-----SNRLHINQANATDSGEYRCVAS 203
C +G P P++ W KDG ++ +D ++ ++ +H + N D G Y+CVA
Sbjct: 21 CSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHS-KHNKPDEGFYQCVAQ 79
Query: 204 N 204
N
Sbjct: 80 N 80
>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain
found in Perlecan and similar proteins.
Ig3_Perlecan_like: domain similar to the third
immunoglobulin (Ig)-like domain found in Perlecan.
Perlecan is a large multi-domain heparin sulfate
proteoglycan, important in tissue development and
organogenesis. Perlecan can be represented as 5 major
portions; its fourth major portion (domain IV) is a
tandem repeat of immunoglobulin-like domains (Ig2-Ig15),
which can vary in size due to alternative splicing.
Perlecan binds many cellular and extracellular ligands.
Its domain IV region has many binding sites. Some of
these have been mapped at the level of individual
Ig-like domains, including a site restricted to the Ig5
domain for heparin/sulfatide, a site restricted to the
Ig3 domain for nidogen-1 and nidogen-2, a site
restricted to Ig4-5 for fibronectin, and sites
restricted to Ig2 and to Ig13-15 for fibulin-2.
Length = 85
Score = 30.6 bits (69), Expect = 0.44
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 137 ETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATD 194
+Q G+D+S C P + W + G G+ R + N L I +D
Sbjct: 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVG-----GGLPSRAMDFNGILTIRNVQLSD 63
Query: 195 SGEYRCVASNSYTSDENAVTI 215
+G Y C SN +DE T+
Sbjct: 64 AGTYVCTGSNMLDTDEATATL 84
>gnl|CDD|143190 cd05713, Ig_MOG_like, Immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). Ig_MOG_like:
immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). MOG, a minor
component of the myelin sheath, is an important
CNS-specific autoantigen, linked to the pathogenesis of
multiple sclerosis (MS) and experimental autoimmune
encephalomyelitis (EAE). It is a transmembrane protein
having an extracellular Ig domain. MOG is expressed in
the CNS on the outermost lamellae of the myelin sheath,
and on the surface of oligodendrocytes, and may
participate in the completion, compaction, and/or
maintenance of myelin. This group also includes
butyrophilin (BTN). BTN is the most abundant protein in
bovine milk-fat globule membrane (MFGM).
Length = 100
Score = 30.6 bits (70), Expect = 0.46
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 159 PQVFWYKDGQVIENDGVH---YR---------ITESN-RLHINQANATDSGEYRCVASNS 205
P V Y+DGQ + G YR I E + L I+ A+D G Y C +
Sbjct: 30 PAVHLYRDGQ--DQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSD 87
Query: 206 YTSDENAVTIRV 217
+E V ++V
Sbjct: 88 GFYEEATVELKV 99
>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional.
Length = 227
Score = 32.2 bits (73), Expect = 0.46
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 141 FGVGSDISIPC-DVDGYPIPQVF------WYKDGQVIENDGVHYRITESN-RLHINQANA 192
F G D + C DG I F WYK+G ++ ++ +N L I A
Sbjct: 141 FNSGKDSKLHCYGTDG--ISSTFKDYTLTWYKNGNIVLYTD-RIQLRNNNSTLVIKSATH 197
Query: 193 TDSGEYRCVASNSYTSDENAVT 214
DSG Y C + S+ +T
Sbjct: 198 DDSGIYTCNLRFNKNSNNYNIT 219
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like:
fourth immunoglobulin (Ig)-like domain of the L1 cell
adhesion molecule (CAM). L1 is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 29.9 bits (67), Expect = 0.55
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCVA 202
G + C V+G P P + W +G IE R S L + +D+ Y+C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 203 SNSY 206
N +
Sbjct: 61 RNRH 64
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 32.2 bits (74), Expect = 0.72
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 21/66 (31%)
Query: 366 HDALVEVSGAL---NTVAVSLMKIANDI------RFLASGPRCGLGELSLPENEPGSSIM 416
HD + E+ AL NT+ L+ + DI + + G E GSS M
Sbjct: 229 HDYIAELFDALARINTI---LIDLCRDIWGYISLGYFKQKVKKG---------EVGSSTM 276
Query: 417 PGKVNP 422
P KVNP
Sbjct: 277 PHKVNP 282
>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain
of Kirrel (kin of irregular chiasm-like) 3 (also known
as Neph2). Ig2_KIRREL3-like: domain similar to the
second immunoglobulin (Ig)-like domain of Kirrel (kin of
irregular chiasm-like) 3 (also known as Neph2). This
protein has five Ig-like domains, one transmembrane
domain, and a cytoplasmic tail. Included in this group
is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and
Drosophila RST (irregular chiasm C-roughest) protein.
These proteins contain multiple Ig domains, have
properties of cell adhesion molecules, and are important
in organ development.
Length = 82
Score = 29.7 bits (67), Expect = 0.76
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 157 PIPQVFWYKDGQVIEN---------DGVHYRITESNRLHINQANATDSGEYRCVASNSY- 206
P ++ W++DG+V++ DG R T + L I ++ + C A N
Sbjct: 13 PAAEIIWFRDGEVLDGATYSKELLKDGK--RETTVSTLPITPSDHDTGRTFTCRARNEAL 70
Query: 207 -TSDENAVTIRV 217
T E +VT+ V
Sbjct: 71 PTGKETSVTLDV 82
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like
domain II (D2) of the human basement membrane heparan
sulfate proteoglycan perlecan, also known as HSPG2.
Perlecan consists of five domains. Domain I has three
putative heparan sulfate attachment sites; domain II
has four LDL receptor-like repeats, and one Ig-like
repeat; domain III resembles the short arm of laminin
chains; domain IV has multiple Ig-like repeats (21
repeats in human perlecan); and domain V resembles the
globular G domain of the laminin A chain and internal
repeats of EGF. Perlecan may participate in a variety
of biological functions including cell binding,
LDL-metabolism, basement membrane assembly and
selective permeability, calcium binding, and growth-
and neurite-promoting activities.
Length = 78
Score = 29.8 bits (67), Expect = 0.79
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGR 39
LTI+ V+ GAYTC+A N G
Sbjct: 44 LTIRDVKESDQGAYTCEAINTRGM 67
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 32.0 bits (74), Expect = 0.87
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNP 422
D +E A + + V L ++A ++ +S G EL GSSIMP K NP
Sbjct: 235 DFALEFLSAASLLMVHLSRLAEELILWSS-QEFGFVELP-DAFSTGSSIMPQKKNP 288
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 31.5 bits (72), Expect = 1.2
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 452 ELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLL 497
E ++ +I SN++RS++ + ++ + + NEE +L
Sbjct: 34 EREQYRAVIYSNIIRSLKTLLEALENLEIESSNSKPENEEIAKKLK 79
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
IG-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 28.8 bits (64), Expect = 1.4
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE---NDGVHYRITESNRLHINQANATDSGEYRC 200
G D ++ C +G P P + W +G IE D R + + + ++ S Y+C
Sbjct: 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS--RKVDGDTIIFSKVQERSSAVYQC 58
Query: 201 VASNSY 206
ASN Y
Sbjct: 59 NASNEY 64
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional.
Length = 1328
Score = 31.1 bits (70), Expect = 1.8
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 177 YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCK 236
YR S N NA++SG + S S + E V + IF R + N +
Sbjct: 973 YRKIFSRFSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSR 1032
Query: 237 LIVEGR 242
I + R
Sbjct: 1033 KICDVR 1038
>gnl|CDD|143268 cd05860, Ig4_SCFR, Fourth immunoglobulin (Ig)-like domain of stem
cell factor receptor (SCFR). Ig4_SCFR: The fourth
Immunoglobulin (Ig)-like domain in stem cell factor
receptor (SCFR). SCFR is organized as an extracellular
component having five IG-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. SCFR and its ligand SCF are
critical for normal hematopoiesis, mast cell
development, melanocytes and gametogenesis. SCF binds to
the second and third Ig-like domains of SCFR. This
fourth Ig-like domain participates in SCFR dimerization,
which follows ligand binding. Deletion of this fourth
domain abolishes the ligand-induced dimerization of SCFR
and completely inhibits signal transduction.
Length = 101
Score = 29.0 bits (65), Expect = 1.8
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 144 GSDISIPCDVDGYPIPQVF-WYKDGQVIENDGVHY-------RITESNRLHINQANATDS 195
G ++ + + + YP P+ W + + N HY + LH+ + T+
Sbjct: 18 GENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEG 77
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y + SNS S + V
Sbjct: 78 GTYTFLVSNSDASASVTFNVYV 99
>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig1_FGFR: The
first immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between
D2 and D3 define a general binding site for all FGFs.
Length = 79
Score = 28.7 bits (64), Expect = 1.9
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 166 DGQVIE--NDGVHYRITESNR-------LHINQANATDSGEYRCVASNSYTSD 209
D Q I DGV + E+NR + I A DSG Y CV S+ SD
Sbjct: 21 DVQSINWTKDGVQ--LGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD 71
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 28.8 bits (64), Expect = 2.1
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHI 187
P +N+ + G ++++ C G P+P + W K ++E I+ S L I
Sbjct: 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRK---ILEPMPATAEISMSGAVLKI 57
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVE 218
D G Y C A N D++ + V+
Sbjct: 58 FNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88
>gnl|CDD|226000 COG3469, COG3469, Chitinase [Carbohydrate transport and
metabolism].
Length = 332
Score = 30.6 bits (69), Expect = 2.2
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 23/87 (26%)
Query: 368 ALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEA 427
AL + N V VS MK A DI + P + A
Sbjct: 52 ALADTPRNYNVVTVSFMKGAGDI----------------------PTFKPYNDPDAEFRA 89
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELN 454
+ A G V +++GG++GH EL
Sbjct: 90 -QVGALNAEGKAVLLSLGGADGHIELK 115
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 30.7 bits (70), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 375 ALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALT--- 429
L +A S+ ++A +IR L R + E + GSS MP K NP E LT
Sbjct: 228 TLGVIASSIERLAIEIRHLQ---RTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLA 284
Query: 430 -MVAAQVM 436
+V + V+
Sbjct: 285 RLVRSYVV 292
>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is
made up of approximately 200 amino acid residues folded
into a classic a/b para-rossmann type of fold. The vWA
domain, since its discovery, has drawn great interest
because of its widespread occurrence and its involvement
in a wide variety of important cellular functions. These
include basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains.
Length = 161
Score = 29.8 bits (67), Expect = 2.3
Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 10/139 (7%)
Query: 413 SSIMPGKVNPTQCEALTMVAA---QVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR 469
S+ K++ + +V++ G+ V + GSN L + +++L +I
Sbjct: 11 GSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAID 70
Query: 470 LIADSATAFTD-----KCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAH 524
+ T+ + ++ + + + ++L+T P+ G + A+ A+
Sbjct: 71 ALKKGLGGGTNIGAALRLALELLKSAKRPNA--RRVIILLTDGEPNDGPELLAEAARELR 128
Query: 525 KEGTTLKVAALKLGYLTEE 543
K G T+ + +E
Sbjct: 129 KLGITVYTIGIGDDANEDE 147
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 30.5 bits (70), Expect = 2.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 408 ENEPGSSIMPGKVNP 422
E GSS MP KVNP
Sbjct: 290 AGEIGSSTMPHKVNP 304
>gnl|CDD|227262 COG4925, COG4925, Uncharacterized conserved protein [Function
unknown].
Length = 166
Score = 29.6 bits (66), Expect = 2.7
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 62 DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGY 117
DY + S TT T +P LT+ PW N+ +F R GY
Sbjct: 88 DYSNNEKIFYLPRKLS------TTGTPMGNAPFG-GTLTYYAPWGNLAIFYKRFGY 136
>gnl|CDD|152118 pfam11682, DUF3279, Protein of unknown function (DUF3279). This
family of proteins with unknown function appears to be
restricted to Enterobacteriaceae.
Length = 128
Score = 29.0 bits (65), Expect = 3.1
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 242 RYCQHHYYSQFCCESC 257
C H YY + C +C
Sbjct: 101 VMCHHDYYGEKYCPAC 116
>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM
(Ng (neuronglia) CAM-related cell adhesion molecule).
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of
NrCAM (Ng (neuronglia) CAM-related cell adhesion
molecule). NrCAM belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region,
and an intracellular domain. NrCAM is primarily
expressed in the nervous system.
Length = 77
Score = 27.6 bits (61), Expect = 3.6
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQV--IENDGVHYRITESNRLHINQANA----TDSGEYRC 200
I I C+ G P P W ++G I+ D + L IN N G Y+C
Sbjct: 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQC 60
Query: 201 VASNSY-TSDENAVTIR 216
A N + N + IR
Sbjct: 61 TARNERGAAVSNNIVIR 77
>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first
immunoglobulin (Ig)-like domain of neural cell adhesion
molecule NCAM-1. NCAM-1 plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 96
Score = 28.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSD-ENAVTIRV 217
S+ L I AN D+G Y+CV SN + E V +++
Sbjct: 59 SSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95
>gnl|CDD|165285 PHA02982, PHA02982, hypothetical protein; Provisional.
Length = 251
Score = 29.7 bits (66), Expect = 3.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
+ N + T+K+ +P+ LG +TC+A + G+
Sbjct: 94 SVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE 126
>gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of
chondroitin sulfate proteoglycans (CSPGs), human
cartilage link protein (LP) and similar proteins.
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to
that found in chondroitin sulfate proteoglycans (CSPGs)
and human cartilage link protein (LP). Included in this
group are the CSPGs aggrecan, versican, and neurocan. In
CSPGs this Ig-like domain is followed by hyaluronan
(HA)-binding tandem repeats, and a C-terminal region
with epidermal growth factor-like, lectin-like, and
complement regulatory protein-like domains. Separating
these N- and C-terminal regions is a nonhomologous
glycosaminoglycan attachment region. In cartilage,
aggrecan forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggrecan and versican have a wide distribution in
connective tissue and extracellular matrices. Neurocan
is localized almost exclusively in nervous tissue.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. There is considerable evidence that
HA-binding CSPGs are involved in developmental processes
in the central nervous system. Members of the vertebrate
HPLN (hyaluronan/HA and proteoglycan binding link)
protein family are physically linked adjacent to CSPG
genes.
Length = 106
Score = 28.0 bits (63), Expect = 4.3
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 33/107 (30%)
Query: 144 GSDISIPCDVDGYPI------PQVFWYK---DGQ-----VIENDGVH-----YRITESNR 184
G ++++PC P P++ W K DG ++ G R+
Sbjct: 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY 61
Query: 185 LHINQANAT---------DSGEYRCVASN--SYTSDENAVTIRVEGI 220
+ +A+ DSG YRC + D V + V G+
Sbjct: 62 PA-DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDT--VELEVRGV 105
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase.
Length = 167
Score = 29.1 bits (66), Expect = 4.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY 177
+G S IS DV G P V DG ++ G Y
Sbjct: 18 DWGALSTISTHKDVGGAPFGNVVSVSDGPPGDSTGNPY 55
>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor (R)
and similar proteins. Ig1_VEGFR_like: first
immunoglobulin (Ig)-like domain of vascular endothelial
growth factor (VEGF) receptor(R) related proteins. The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth. This group also contains
alpha-type platelet-derived growth factor receptor
precursor (PDGFR)-alpha (CD140a), and PDGFR-beta
(CD140b). PDGFRs alpha and beta have an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion that has protein
tyrosine kinase activity.
Length = 84
Score = 27.7 bits (62), Expect = 4.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
S+ L I A DSG Y C AS+ + + + +
Sbjct: 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83
>gnl|CDD|188534 TIGR04019, B_thiol_YtxJ, bacillithiol system protein YtxJ. Members
of this protein family, including YtxJ from Bacillus
subtilis, occur in species that encode proteins for
synthesizing bacillithiol. The protein is described as
thioredoxin-like, while another bacillithiol-associated
protein, YpdA (TIGR04018), is described as thioredoxin
reductase-like [Unknown function, Enzymes of unknown
specificity].
Length = 105
Score = 27.9 bits (63), Expect = 4.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 159 PQVFWYKDGQVIENDGVHYRITESN 183
PQV K+G+V+ H+ IT
Sbjct: 79 PQVIVIKNGEVV-WHASHWDITADA 102
>gnl|CDD|143233 cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-like domain of
interleukin-1 receptor (IL1R) and similar proteins.
Ig1_IL1R_like: domain similar to the first
immunoglobulin (Ig)-like domain of interleukin-1
receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines
which participate in the regulation of inflammation,
immune responses, and hematopoiesis. These cytokines
bind to the IL-1 receptor type 1 (IL1R1), which is
activated on additional association with an accessory
protein, IL1RAP. IL-1 also binds a second receptor
designated type II (IL1R2). Mature IL1R1 consists of
three Ig-like domains, a transmembrane domain, and a
large cytoplasmic domain. Mature IL1R2 is organized
similarly except that it has a short cytoplasmic domain.
The latter does not initiate signal transduction. A
naturally occurring cytokine IL-1RA (IL-1 receptor
antagonist) is widely expressed and binds to IL-1
receptors, inhibiting the binding of IL-1 alpha and IL-1
beta.
Length = 94
Score = 27.8 bits (62), Expect = 5.0
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 149 IPCDVDGYPIPQ-----VFWYKDGQVIENDGVHYRITESNRLH-------INQANATDSG 196
I C + I Q + WYK E +R+H A DSG
Sbjct: 19 IKCPLFYSYIAQSPGLNLTWYKSD----GKT-PIPTEERSRMHQQKDLLWFLPAALEDSG 73
Query: 197 EYRCVASNSYTSDENAVTIRV 217
Y CV NS + ++++ V
Sbjct: 74 LYTCVVRNSTYCMKVSISLTV 94
>gnl|CDD|185219 PRK15319, PRK15319, AIDA autotransporter-like protein ShdA;
Provisional.
Length = 2039
Score = 29.7 bits (66), Expect = 5.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 143 VGSDISIPCDVDGYPIPQV------FWYKDGQVIENDGVHYRITESNRLHINQANAT 193
+ SD +I D D I + F DG+V E D HY +T S + ++ NAT
Sbjct: 1139 IDSDSAITSDFDDLTIAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNAT 1195
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 29.6 bits (67), Expect = 5.1
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 375 ALNTVAVSLMKIANDIRFLASGPRCGLGEL--SLPENEPGSSIMPGKVNPTQCEALTMVA 432
L V SL + A +IR L R + E+ + + GSS MP K NP + E L+ +A
Sbjct: 225 TLALVGASLERFATEIRNLQ---RTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLA 281
Query: 433 AQVMGNHVAV 442
+ VA
Sbjct: 282 RVLRSYAVAA 291
>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain. These
domains belong to the immunoglobulin superfamily.
Length = 89
Score = 27.4 bits (61), Expect = 5.4
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 154 DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN--ATDSGEYR-----CVASNS 205
G P P++ WY DG+ +E + L+ + S E C S
Sbjct: 25 GGKPAPRITWYLDGRELEAITTSSEQDPESGLYTVTSTLKLVPSREDHGRSLTCQVSYG 83
>gnl|CDD|143269 cd05861, Ig1_PDGFR-alphabeta, Frst immunoglobulin (Ig)-like domain
of platelet-derived growth factor (PDGF) receptors (R),
alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta:
The first immunoglobulin (Ig)-like domain of
platelet-derived growth factor (PDGF) receptors (R),
alpha (CD140a), and beta (CD140b). PDGF is a potent
mitogen for connective tissue cells. PDGF-stimulated
processes are mediated by three different PDGFs
(PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs,
whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha
and beta have similar organization: an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. In mice, PDGFRalpha and
PDGFRbeta are essential for normal development.
Length = 84
Score = 27.5 bits (61), Expect = 5.5
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 14/85 (16%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---------LHINQANATD 194
G I++ C V G + W G+ I G E + L A D
Sbjct: 1 GETITVNCIVQGNEVVDFSWTYPGKDI---GKGIPEVEEVKVPATTLRSTLTFPHATVED 57
Query: 195 SGEYRCVASNSY--TSDENAVTIRV 217
SG Y C A S V I V
Sbjct: 58 SGTYECAAHESTQDQKAFKKVNITV 82
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans,
hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
in chitin and chitodextrins. The domain architecture of
ChiD includes a catalytic glycosyl hydrolase family 18
(GH18) domain, a chitin-binding domain, and a
fibronectin type III domain. The chitin-binding and
fibronectin type III domains are located either
N-terminal or C-terminal to the catalytic domain. This
family includes exochitinase Chi36 from Bacillus cereus.
Length = 312
Score = 29.2 bits (66), Expect = 5.6
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQC 425
L +V N + V+ + +D GSS PG +P +
Sbjct: 18 RQDLDDVPSKYNVINVAFAEPTSDGGGE-------------VTFNNGSS--PGGYSPAEF 62
Query: 426 EALTMVAAQVMGNHVAVTIGGSNGHFELN 454
+A + A Q G V ++IGG+NGH +LN
Sbjct: 63 KA-DIKALQAKGKKVLISIGGANGHVDLN 90
>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 29.1 bits (66), Expect = 6.0
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 452 ELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGI-VANEENIHRLLHESLMLVTALNPH 510
E ++PLI SN+L S++ + D+ I + E+I + +
Sbjct: 53 ERREYRPLIYSNILESMKALVDAMEEL------NIPFEDPESILDIRIITEQFNKTDETE 106
Query: 511 IGYDKAAKIAKTAHK 525
K IAK
Sbjct: 107 NVLPKE--IAKAIKA 119
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 29.0 bits (65), Expect = 7.8
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 321 IVSIFYFTYLVKLSELLETKCAAKIAELTGL--PFKSAPNKFEALAAH------------ 366
+++I+Y L L T + +++G F AP + E L
Sbjct: 153 VLAIWYDEIKRHLKALEHTMEVISVGKISGAMGNFAHAPLELEELVCEELGLKPAPVSNQ 212
Query: 367 ----DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL--GELSLPENEPGSSIMPGKV 420
D ++ AL +A S KIA IR L R + E + + GSS MP K
Sbjct: 213 VIQRDRYARLASALALLASSCEKIAVAIRHLQ---RTEVYEAEEYFSKGQKGSSAMPHKR 269
Query: 421 NPTQCEALT 429
NP E +T
Sbjct: 270 NPVLSENIT 278
>gnl|CDD|164776 PHA00010, G, major spike protein.
Length = 179
Score = 28.2 bits (63), Expect = 8.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 121 TQNGGYLVPVKVNITLET--QVFGVGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVH 176
+ +GG+ ++V+ + T QVF V + +S DVD I + F DGQV
Sbjct: 52 STHGGFAHVIRVDTSNPTDNQVFSVAASLSF--DVDSKYIACLVRFESADGQVPTALPAL 109
Query: 177 Y 177
Y
Sbjct: 110 Y 110
>gnl|CDD|219928 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit. The S.
cerevisiae Mgr1 protein has been shown to be required
for mitochondrial viability in yeast lacking
mitochondrial DNA. It is a mitochondrial inner membrane
protein, which interacts with Yme1 and is a new subunit
of the i-AAA protease complex.
Length = 362
Score = 28.7 bits (64), Expect = 8.1
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 485 GIVANEEN---IHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAAL 535
NEEN I +LLHE L V LN D + K+ L+ L
Sbjct: 271 YTELNEENRKRILKLLHEDLNEVNELNKAPRLDLIPE-GKSQLYNPEALRSVIL 323
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,553,049
Number of extensions: 2608606
Number of successful extensions: 2489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2414
Number of HSP's successfully gapped: 169
Length of query: 558
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 456
Effective length of database: 6,413,494
Effective search space: 2924553264
Effective search space used: 2924553264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)