RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10160
(558 letters)
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 488 bits (1260), Expect = e-170
Identities = 144/219 (65%), Positives = 177/219 (80%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSM 463
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 489 bits (1262), Expect = e-170
Identities = 171/219 (78%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 272 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 331
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 332 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 391
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 392 MIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 451
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 452 AKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 490
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 489 bits (1260), Expect = e-169
Identities = 152/219 (69%), Positives = 179/219 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A +I++ TGL F++APN+FEALAAHDA+VE SGALNT+A SL KIA DIR+L SGPRC
Sbjct: 270 KIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRC 329
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVFKP+
Sbjct: 330 GYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPV 389
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+++N+L SIRLI D+A +F CV GI ANE IH LL +SLMLVTALNP IGYD A+K+
Sbjct: 390 MIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKV 449
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHK+G TLK +AL+LG LTE+EF++WVVPE MLGPK
Sbjct: 450 AKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 487 bits (1256), Expect = e-169
Identities = 125/219 (57%), Positives = 154/219 (70%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
A +AE TGLPF+ A N+F ALAAHD LV V GA+ T+A +LMKI ND+R+LASGP
Sbjct: 245 LVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYA 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+++P NEPGSSIMPGKVNPTQ EALTMV +V GN V GS G+F+LNV+KP+
Sbjct: 305 GIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+ + L SI L+AD+ +F GI N E I L ++ ML TALN IGYDKAA+I
Sbjct: 365 MAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
K A KE TLK AAL+LGYLTEEEF++ VVP + P
Sbjct: 425 VKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 481 bits (1241), Expect = e-167
Identities = 156/216 (72%), Positives = 174/216 (80%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A K+AE T PFK+APNKFE+LAAHDALVE SG LNT+AVSLMKIANDIR L SGPRC
Sbjct: 266 KFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRC 325
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQ EALTMV QVMGNHV VTI GSNGH ELNVFKP+
Sbjct: 326 GLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPV 385
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ N+L+SI L++DS +F CV G+ N I+ L +SLMLVT LNPHIGYD AAKI
Sbjct: 386 IIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKI 445
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDML 555
AK AHK G TLK AA KL +L+EEEF+K VVPE M+
Sbjct: 446 AKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 471 bits (1214), Expect = e-162
Identities = 104/224 (46%), Positives = 145/224 (64%), Gaps = 5/224 (2%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
+ A + TGL ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 266 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 325
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+ P
Sbjct: 326 TGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIP 385
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S +L+ + + F +C++G+ AN E++ RL S +VT LN IGY++AA
Sbjct: 386 MMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAA 445
Query: 519 IAKTAHKEGTTLKVAALKLGY----LTEEEFNKWVVPEDMLGPK 558
+AK A KE T++ + G L+ E+ ++ + M +
Sbjct: 446 VAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 489
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 452 bits (1165), Expect = e-155
Identities = 91/219 (41%), Positives = 140/219 (63%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+A+ +G P +SA + +A D EVS AL +++ KIAND+R +ASGPR
Sbjct: 245 IVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRA 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV +P+
Sbjct: 305 GLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+ N+++SI ++ + +FT+ C+ GI ANEE + + +S+ ++TA+NPH+GY+ AAK+
Sbjct: 365 LFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKL 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
A+ A+ G +++ +K G LTEE+ N+ + P +M+ P
Sbjct: 425 AREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPG 463
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 443 bits (1143), Expect = e-152
Identities = 81/219 (36%), Positives = 125/219 (57%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K+AE+TG P A + EA + A V V GAL +AV + KI ND+R L+SGPR
Sbjct: 248 LAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRA 307
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GL E++LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV +P+
Sbjct: 308 GLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPV 367
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I + S+ ++ ++ +KC++GI AN+E ++ S+ +VT LNP IG+ +
Sbjct: 368 IGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIV 427
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
K + G +++ L+ G LTE E + ++++ P
Sbjct: 428 GKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 433 bits (1116), Expect = e-148
Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ ++++++G+ K+ N EA A V SG L +AV L KIAND+R L+SGPR
Sbjct: 265 QAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRS 324
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE+ LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F+PL
Sbjct: 325 GLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPL 384
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IV N+L S+RL+ + T ++CV GI AN E ES+ L TAL P +GY +AA+I
Sbjct: 385 IVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEI 444
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDM 554
AK A G T+ A+ G L + P M
Sbjct: 445 AKQALASGQTVMEVAISKG-LDASALTIMLDPLRM 478
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 96.2 bits (239), Expect = 6e-22
Identities = 36/237 (15%), Positives = 64/237 (27%), Gaps = 56/237 (23%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGT 65
SE + L + E GAY+C+ ++V + PS + G
Sbjct: 53 SERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDED-----GE 107
Query: 66 ILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGG 125
+ ++ +P T+
Sbjct: 108 DEAEDTGVDTGAPYWTRPE----------------------------------------- 126
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ES 182
+ + + + C G P P + W K+G+ + I +
Sbjct: 127 -------RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIV 239
L + +D G Y CV N + S T+ V H L AN ++
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Score = 76.2 bits (187), Expect = 3e-15
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
VP E VFG G + + C G P+ W KDG + + L
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RVLVGPQR-LQ 64
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRD 228
+ A+ DSG Y C + + +
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDG 106
Score = 69.3 bits (169), Expect = 5e-13
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG---------------QVIEN 172
P+ Q +GSD+ C V P + W K V++
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKT 280
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
G + E L ++ D+GEY C+A NS ++ + V
Sbjct: 281 AGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 35.0 bits (80), Expect = 0.055
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEK 54
+ +L++ V E G YTC A N +G + + L LP+E+
Sbjct: 287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVVLPAEE 330
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 89.8 bits (223), Expect = 8e-22
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDS 195
+T + VG +++ G P PQV W K G ++ VH R ++ + + QA +DS
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDS 91
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
GEY D + IRV
Sbjct: 92 GEYELSVQIENMKDTATIRIRV 113
Score = 32.4 bits (74), Expect = 0.11
Identities = 3/33 (9%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+++ G Y + + T+ ++
Sbjct: 81 FFVRQAARSDSGEYELSVQIENMKD-TATIRIR 112
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 89.1 bits (221), Expect = 2e-21
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
Q V + C G P+P + W KDG ++ + E+ L I A D
Sbjct: 14 GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGD 73
Query: 195 SGEYRCVASNSYTSDENAVTIRVEG 219
+G Y C+AS + I V+
Sbjct: 74 TGRYTCIASTPSGEATWSAYIEVQE 98
Score = 37.4 bits (87), Expect = 0.002
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 2 IQVRSENYELNKN-MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
+ + + +N +L I+ + G YTC A G A +W+ ++ P
Sbjct: 49 VSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEA-TWSAYIEVQEFGVPVQP 105
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 93.8 bits (233), Expect = 3e-21
Identities = 43/265 (16%), Positives = 72/265 (27%), Gaps = 53/265 (20%)
Query: 5 RSENYELNKN--MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS--EKVADPN 59
E ++ L I + G Y + G+ + +A +V
Sbjct: 50 VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109
Query: 60 AIDY----------GTILSSAFPSESASPVVT--------------QTTTT--------- 86
A+ G L S V +T T
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQIN 169
Query: 87 ----------TTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITL 136
E T + A LK+ +
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANA 192
+ G +++ C+V G P P+V W K+ + + +D H + IN +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD-HCNLKFEAGRTAYFTINGVST 288
Query: 193 TDSGEYRCVASNSYTSDENAVTIRV 217
DSG+Y V N Y S+ + T+ V
Sbjct: 289 ADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 75.3 bits (185), Expect = 4e-15
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANAT 193
L +V ++ + C V + WYKD + I D + + L I + +
Sbjct: 14 LSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKDGICTLLITEFSKK 71
Query: 194 DSGEYRCVASNSYTSDENAVTIRVEG 219
D+G Y + + D++ + + E
Sbjct: 72 DAGIYEVILKDDRGKDKSRLKLVDEA 97
Score = 71.5 bits (175), Expect = 8e-14
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDG----------YPIPQVFWYKDGQVIENDGVHY 177
++ + + ++ +D+ I +G +V W +G I
Sbjct: 97 AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RV 155
Query: 178 RITESNR---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ + L IN+ D G+Y + T + V + +
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 200
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 90.7 bits (225), Expect = 3e-21
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRL 185
+ Q F G D I CDV P + W G+ VI V + + +N L
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I TD G YRC + N I+V
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 72.9 bits (179), Expect = 5e-15
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYK-DGQVIENDGVHYRIT----ES 182
++V+I VG C V G + W+ +G+ + + + +S
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENA-VTIRV 217
+ L I AN D+G Y+CV + + A V +++
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 38.3 bits (89), Expect = 0.003
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
LTI + G Y C G TV ++
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99
Score = 30.9 bits (70), Expect = 0.66
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS 42
L+ N L I+ ++ G Y C+ ++
Sbjct: 152 LSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 87.8 bits (218), Expect = 4e-21
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
E Q G + + V G W K + I+ H ++ S +L I A
Sbjct: 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKLTILAARQ 72
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
G Y + N S + V + V P+
Sbjct: 73 EHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
Score = 32.7 bits (75), Expect = 0.088
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSW-TVTLQALPSEKVADPNAIDYG 64
LTI E G YT N LG + +T+ P P+ G
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPSSG 114
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 87.0 bits (216), Expect = 6e-21
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESN--- 183
+P K+ G +++ C G P P+V W G+ I + + I ++
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
L I D G Y N + SD V I + I
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 35.4 bits (82), Expect = 0.006
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L I V+ + G YT N G S TV +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSD-SATVNI 95
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 86.6 bits (215), Expect = 7e-21
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+ K+ G ++ D G P P W + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAKSSTTS 59
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ A DSG Y+ N DE + V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 32.7 bits (75), Expect = 0.047
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ V +++ + + + G Y + N LG + +
Sbjct: 49 LLVDAKS---STTSIFFPSAKRADSGNYKLKVKNELGEDEA-IFEVI 91
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 86.2 bits (214), Expect = 1e-20
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYR 199
G D+ + V G P P V W ++ Q + D + RL I A D+G Y
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78
Query: 200 CVASNSYTSDENAVTIRVEG 219
C A N Y + + + V G
Sbjct: 79 CKAVNEYGARQCEARLEVRG 98
Score = 35.3 bits (82), Expect = 0.007
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVS 42
L I E G YTC+A N G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQC 90
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 86.2 bits (214), Expect = 1e-20
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATD 194
LE Q +G I + C G P PQ+ W+KD + + D + + NR L I + D
Sbjct: 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-GIVLKDGNRNLTIRRVRKED 75
Query: 195 SGEYRCVASNSYTSDENAVTIRVEG 219
G Y C A + + +EG
Sbjct: 76 EGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI+RV E G YTCQA + LG A
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFI 97
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 84.4 bits (209), Expect = 4e-20
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
Q V + C G P+P + W K+G I E L I +D+
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDT 74
Query: 196 GEYRCVASNSYTSDENAVTIRVEG 219
G Y CVA++S + + V
Sbjct: 75 GTYTCVATSSSGETSWSAVLDVTE 98
Score = 35.8 bits (83), Expect = 0.005
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
+ L IK + G YTC A + G SW+ L S
Sbjct: 59 QEQGTLQIKNLRISDTGTYTCVATSSSGE-TSWSAVLDVTES 99
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 93.5 bits (232), Expect = 5e-20
Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 42/250 (16%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNA-I 61
V ++ + L IK E G Y C N +G V +T+ A S K+ P +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTV 355
Query: 62 DYGTILS-----SAFPSES------ASPVVTQTTTTTTEATSPH---VYAALTHCVPWSN 107
D+G + P ++ + + E+ +Y
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMY----------- 404
Query: 108 VCLFGARSGYLKETQN-----GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
C R+ + GG P + + + G + + C G P P++
Sbjct: 405 QCF--VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEIS 462
Query: 163 WYKDGQVIENDG-------VHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
W DG+ I N+ V + L+I +A D G Y+C+A + E++ +
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 216 RVEGI-FIHP 224
V G+ +I
Sbjct: 523 NVYGLPYIRQ 532
Score = 87.7 bits (217), Expect = 3e-18
Identities = 47/243 (19%), Positives = 74/243 (30%), Gaps = 45/243 (18%)
Query: 16 LTIKRVEPER-LGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSE 74
L I+ V PE +Y C+ + L + T L + +P + ++S A
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL---VITEPISSAVPKVVSLAKFDM 257
Query: 75 SASPVVTQTTTTTTEAT---SPHVY-------AALTHCVPWSNVCLFGARSGYLKETQ-- 122
+ T A P V ++ + + +K+
Sbjct: 258 KT-YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316
Query: 123 -NGGY-------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
+G Y P+ I TQ G C G PI V
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376
Query: 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
W KDG+ I + + L I D G Y+C N S E + +++ G F
Sbjct: 377 WMKDGKAIGHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 223 HPS 225
P
Sbjct: 429 PPV 431
Score = 85.0 bits (210), Expect = 2e-17
Identities = 47/259 (18%), Positives = 76/259 (29%), Gaps = 43/259 (16%)
Query: 3 QVRSENYELNKNMLTIKRVEPERL------GAYTCQAYNGLGRAVSWTVTLQA----LPS 52
V + L E Y C A N G +S V ++A
Sbjct: 83 DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 142
Query: 53 EKVADPNAIDYGT-ILSSAFPSESASPVVT-------QTTTTTTEATSPHVYAALT---- 100
V + I + ++ PS A V + +
Sbjct: 143 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 202
Query: 101 -------------HCV---PWSNVCLFGARSGYLKETQNGGYLVPVKVNIT-LETQVFGV 143
C + A G L T+ VP V++ + + +
Sbjct: 203 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSG 262
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY---RITESNR-LHINQANATDSGEYR 199
S +++ C GYP+P WYK + R+ + + L I A DSG+Y
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 200 CVASNSYTSDENAVTIRVE 218
CV +NS + + V
Sbjct: 323 CVVNNSVGGESVETVLTVT 341
Score = 81.9 bits (202), Expect = 2e-16
Identities = 46/235 (19%), Positives = 70/235 (29%), Gaps = 46/235 (19%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPSEKVADPNAIDYGTILS----- 68
L I V G Y C A + +G A + L LP + + AI G L
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV 550
Query: 69 SAFPSESAS--------------PVVTQTTTTTTEATSPH---VYAALTHCVPWSNVCLF 111
+ +P +S V T Y CV
Sbjct: 551 AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY----TCV-------- 598
Query: 112 GARSGYLKETQNGGYLV----PVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKD 166
A++ + + P + E VG +++ C V G +P + W D
Sbjct: 599 -AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Query: 167 GQVIENDG---VHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
GQ I D + L I A+ +G + C A N + + V
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
Score = 78.4 bits (193), Expect = 2e-15
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN-A 192
+E + G + + C V GYPI + W +D + + + ++ + L I
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR-KQKVFPNGTLIIENVERN 589
Query: 193 TDSGEYRCVASNSYTSDENA---VTIRVEGIFIHPSCRDLPL 231
+D Y CVA N V + V I + + P
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPA 631
Score = 76.5 bits (188), Expect = 9e-15
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-----ES 182
VP + + + F GSD + C DG+P PQV W K + + + E
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
LH++ T+ G Y C A N S +AV +
Sbjct: 773 GTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 69.2 bits (169), Expect = 2e-12
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHI 187
PV + F + I C G P+P++ W + DG + + +I+ +L
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98
Query: 188 NQANATD------SGEYRCVASNSY-TSDENAVTIRV 217
A D + Y C+A N + + V +R
Sbjct: 99 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 135
Score = 64.6 bits (157), Expect = 5e-11
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV---DGYPIPQVFWYKDGQVIENDGVH----YRIT 180
V + + G+ I C + + V W+ D + G Y +
Sbjct: 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196
Query: 181 ESNRLHINQANATDS-GEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230
S LHI + D Y+C + T + + + P +P
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVP 247
Score = 41.5 bits (97), Expect = 7e-04
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+S+N + + L + ++ G Y C+A NG+G +S + +
Sbjct: 764 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 38.4 bits (89), Expect = 0.007
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+ + ++LTI+ VE G +TC A N G +T L
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ-QFTTPL 709
Score = 37.6 bits (87), Expect = 0.011
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+++ + VA + S A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDA 34
Score = 29.9 bits (67), Expect = 3.0
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVS 42
+ + + L + A G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTL 27
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 87.1 bits (216), Expect = 5e-20
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANAT 193
+ Q F G D + C V P P V W + + + + + +N L I N +
Sbjct: 8 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS 67
Query: 194 DSGEYRCVASNSYTSDENAVTIRVE 218
D G YRC + + I V
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVI 92
Score = 84.8 bits (210), Expect = 3e-19
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 113 ARSGYLKETQNGGYLVPVKV------NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD 166
R E +V V V G +++ C G P P + W+++
Sbjct: 76 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN 135
Query: 167 GQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
G++IE + Y + SN L + +D G Y C A+N DE ++V
Sbjct: 136 GKLIEENE-KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 35.1 bits (81), Expect = 0.024
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LT++ + G Y C+A N G LQ
Sbjct: 154 LTVRNIINSDGGPYVCRATNKAGED-EKQAFLQ 185
Score = 30.1 bits (68), Expect = 1.1
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS---WTVTLQALPS 52
L N L I + G Y C+ + V + P+
Sbjct: 54 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA 98
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 87.1 bits (216), Expect = 5e-20
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNRL 185
+ + Q F G D + C V P P V W + + + + +N L
Sbjct: 94 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 153
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I N +D G YRC + + I V
Sbjct: 154 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 77.5 bits (191), Expect = 1e-16
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
++V I+L VG C G P ++ G+ I + + + RL
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSRL 60
Query: 186 HINQANATDSGEYRCVASNSYTSDENA 212
I AN D+G YRC A+++ + A
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEA 87
Score = 39.4 bits (92), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI E G Y CQA + G+ TV L+
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 92
Score = 29.0 bits (65), Expect = 2.6
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS 42
L N L I + G Y C+ +
Sbjct: 148 LANNNLQILNINKSDEGIYRCEGRVEARGEID 179
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 90.7 bits (225), Expect = 7e-20
Identities = 42/229 (18%), Positives = 65/229 (28%), Gaps = 33/229 (14%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
L I +VE +G YTC N + V P D +Y + FP E+
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNH---KVLGPPTPLILRNDGVMGEYEPKIEVQFP-ET 214
Query: 76 ASPVVTQTTTTTTEAT---SPHV--YAALTHCVPWSNVCLFGARSGYLKETQ---NGGY- 126
T A P + A + + Q G Y
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274
Query: 127 ------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
+ + + C +G P P W K+G
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ E L+I N +D+G Y+CVA N + ++ + V
Sbjct: 335 PLLTRD--RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 88.0 bits (218), Expect = 6e-19
Identities = 47/243 (19%), Positives = 69/243 (28%), Gaps = 31/243 (12%)
Query: 5 RSENYELNKNMLTIKRV-EPERLGAYTCQAYNGLGRAVSWTVTLQA--LPSEKVADPNAI 61
Y + L I + + G Y C A N G VS LQ L + K + +
Sbjct: 53 MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTV 112
Query: 62 D----YGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALT----------------- 100
G +L P S + +
Sbjct: 113 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 101 HCVPWSNVCLFGARSGY----LKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156
CV + V L+ G P ET G+ + + C G
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232
Query: 157 PIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
P+P + W + DG+ I R + L I D+G Y CVA NS + +
Sbjct: 233 PVPTILWRRADGKPIARKA--RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 216 RVE 218
Sbjct: 291 TFY 293
Score = 69.5 bits (170), Expect = 6e-13
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI-NQANATDSGEYRCVA 202
+ + C+V G P P + W +G ++ L I N D+G Y+C+A
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82
Query: 203 SNSYTSDE-NAVTIRVEGI 220
+NS+ + ++ +
Sbjct: 83 TNSFGTIVSREAKLQFAYL 101
Score = 39.8 bits (93), Expect = 0.002
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
R + +L I + E G+Y C A N G+ +T A P+
Sbjct: 249 RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297
Score = 36.7 bits (85), Expect = 0.015
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ ++ + L I V G Y C A N G + L
Sbjct: 339 RDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI-FSSAELS 380
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 87.2 bits (216), Expect = 8e-20
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 60/213 (28%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILS 68
+ L I P G Y + ++G TV L S + D ++ +
Sbjct: 54 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK-TVDL----SGQAYDEAYAEFQRLKQ 108
Query: 69 SAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLV 128
+A ++ + V+ G
Sbjct: 109 AAIAEKNRARVLG-------------------------------------------GLPD 125
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---L 185
V + G +++ C+V G P P+V W K+ + + E+ R
Sbjct: 126 VVTIQ---------EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYF 176
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
IN + DSG+Y V N Y S+ + T+ V
Sbjct: 177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 73.8 bits (181), Expect = 3e-15
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 143 VGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEY 198
I + V Y +V W +G I + + L IN+ D G+Y
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKY 74
Query: 199 RCVASNSYTSDENAVTIRVEG 219
+ T + V + +
Sbjct: 75 VMELFDGKTGHQKTVDLSGQA 95
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 83.6 bits (207), Expect = 9e-20
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
+ IP V G P P + W+ +G ++
Sbjct: 2 HFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 185 -----LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L ++ ++G+Y +A N Y DE ++ G
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNA 60
++ N+ L + G YT A N G+ ++
Sbjct: 49 CTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAH------FMGWPG 101
Query: 61 ID 62
ID
Sbjct: 102 ID 103
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 83.1 bits (206), Expect = 1e-19
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
L+ S G P P W KDG+ I G Y+++E L I++ +
Sbjct: 12 GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFLEIHKTD 70
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGI 220
+DSG Y C NS S ++ + ++ I
Sbjct: 71 TSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 33.4 bits (77), Expect = 0.030
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQAL 50
+ L I + + G YTC N G S +T++A+
Sbjct: 57 EDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 83.1 bits (206), Expect = 1e-19
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
+ + G + +V P +V WY +G ++ T ++ L I +
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS-KIHYTNTSGVLTLEILDCHT 73
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
DSG YR V +N + T+ V G
Sbjct: 74 DDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 36.1 bits (84), Expect = 0.003
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVS 42
L I + G Y N G A
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASD 92
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 90.0 bits (223), Expect = 1e-19
Identities = 33/261 (12%), Positives = 65/261 (24%), Gaps = 48/261 (18%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ-ALPSEKVADPNA 60
Q + ++ L R + G Y C A G A S ++ + A +
Sbjct: 50 WQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHE 109
Query: 61 I---------------------------DYGTILSSAFPSESASPVVTQTT-------TT 86
+A ++ + T
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169
Query: 87 TTEATSPHVYAALTHCVPWSNV----CLFGARSGYLKETQNGGYLVPVKVNITLETQVFG 142
+ + + Y C + + N GY + +
Sbjct: 170 KEDVSDIYKY----VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHINQANATDSGEY 198
G I C P+ ++K+G+ + + + T RL D G Y
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVY 285
Query: 199 RCVASNSYTSDE-NAVTIRVE 218
C N + +++ + V
Sbjct: 286 TCEVDNGVGKPQKHSLKLTVV 306
Score = 83.8 bits (207), Expect = 1e-17
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
G D++IPC V G P P V W + + + +T+S L I D G Y C A
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVTDSG-LVIKGVKNGDKGYYGCRA 379
Query: 203 SNSYTSDENAVTIRV 217
+N + ++V
Sbjct: 380 TNEHGDKYFETLVQV 394
Score = 72.6 bits (178), Expect = 6e-14
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESN-RLHINQANAT 193
+F + + C ++G + W KDG+ + + + L + A+
Sbjct: 13 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS 72
Query: 194 DSGEYRCVASNSY-TSDENAVTIRVEGI 220
D G Y+C A + ++ R +
Sbjct: 73 DEGHYQCFAETPAGVASSRVISFRKTYL 100
Score = 36.8 bits (85), Expect = 0.017
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + + L IK V+ G Y C+A N G + +Q
Sbjct: 348 KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-KYFETLVQ 393
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 91.7 bits (227), Expect = 1e-19
Identities = 41/250 (16%), Positives = 65/250 (26%), Gaps = 46/250 (18%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILS-- 68
NK + T+ Y C+A N +GR + + P + +S
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLW 570
Query: 69 ---SAFPSESASPVVT-----QTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGY--- 117
+T P + N +F +
Sbjct: 571 CTADRSTF----ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 118 -----LKETQNGGY-----------------------LVPVKVNITLETQVFGVGSDISI 149
G Y V + LE Q +G I +
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 150 PCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
C G P PQ+ W+KD + + D + L I + D G Y C A +
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 746
Query: 210 ENAVTIRVEG 219
+ +EG
Sbjct: 747 KVEAFFIIEG 756
Score = 84.0 bits (207), Expect = 3e-17
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
VG + IP GYP P++ WYK+G +E++ + I + L I + + D+G Y +
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 203 SNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
+N + ++ + + + +++ P + L + G
Sbjct: 401 TNPISKEKQSHVVSLV-VYVPPQIGEKSLISPVDSYQYG 438
Score = 71.3 bits (174), Expect = 3e-13
Identities = 34/256 (13%), Positives = 65/256 (25%), Gaps = 41/256 (16%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
++V + L LTI +V GAY C + V +Q S +A +
Sbjct: 74 VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS-VIYVYVQDYRSPFIASVSDQ 132
Query: 62 DYGTILSSA------FPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSN-------- 107
++ P + + +
Sbjct: 133 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI 192
Query: 108 ------VCLFGARSGYLKETQNGGYLVPVKVNIT------LETQVFGVGSDISIPCDVDG 155
C A+ +V V I VG + + C
Sbjct: 193 SYAGMVFCE--AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250
Query: 156 YPIPQVFWYKDGQVIENDGVHYRITE------------SNRLHINQANATDSGEYRCVAS 203
+ + + ++ + + L I+ +D G Y C AS
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Query: 204 NSYTSDENAVTIRVEG 219
+ + +N+ +RV
Sbjct: 311 SGLMTKKNSTFVRVHE 326
Score = 65.9 bits (160), Expect = 2e-11
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
L +++I + + + I C G W + E V
Sbjct: 29 LDLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQR-VEVTECSDGLFC 85
Query: 184 -RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L I + D+G Y+C + + V ++
Sbjct: 86 KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Score = 63.2 bits (153), Expect = 1e-10
Identities = 24/225 (10%), Positives = 52/225 (23%), Gaps = 31/225 (13%)
Query: 18 IKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA-----LPSEKVADPNA------------ 60
++ + + C + +V+L N
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLP-SVSLDLPRLSIQKDILTIKANTTLQITCRGQRDL 59
Query: 61 ----IDYGTILSSAFPSESASPVVTQTTTTTTEATSPH--VYAALTHCVPWSNVCLFGAR 114
+ + S + T T + Y C L
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAY----KCFY-RETDLASVI 114
Query: 115 SGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWY-KDGQVIEND 173
Y+++ ++ ++ V + + IPC + + D
Sbjct: 115 YVYVQDYRSP-FIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD 173
Query: 174 GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
G I + +G C A + S ++ + I V
Sbjct: 174 GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Score = 58.2 bits (140), Expect = 4e-09
Identities = 42/278 (15%), Positives = 72/278 (25%), Gaps = 80/278 (28%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS----EKVADPNAID 62
+ + LTI V G YTC A +GL S V + P +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 63 YGTILS-----SAFPSES-----------ASPVVTQTTT-TTTEATSPH--VYAALTHCV 103
G + +P ++ + T E + Y +
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY----TVI 399
Query: 104 PWSNVCLFGARSGYLKETQNGGYLVPVKV-------NITLETQVFGVGSDISIPCDVDGY 156
+ KE Q+ + V V ++ + G+ ++ C V
Sbjct: 400 ---------LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAI 450
Query: 157 PIP-QVFWYKDGQ--------------------------------VIENDGVHYRITESN 183
P P + WY + IE + + + E
Sbjct: 451 PPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGK 510
Query: 184 R---LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ A S Y+C A N E ++ V
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT 548
Score = 39.4 bits (91), Expect = 0.004
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ LTI+RV E G YTCQA + LG A
Sbjct: 715 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFI 753
Score = 36.3 bits (83), Expect = 0.027
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
N + ++ +K + G Y C A + + V Q
Sbjct: 616 MFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH-CVVRQ 658
Score = 29.7 bits (66), Expect = 2.7
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ + CV + + + +V++ + + I
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKD 39
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 82.3 bits (204), Expect = 2e-19
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
+++Q G GSD V G P P+ WYK+G IE Y + L I
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
DS A N + + V+
Sbjct: 72 EDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 34.9 bits (81), Expect = 0.009
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVS 42
L I+ V E + +A N G S
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSS 90
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 82.4 bits (204), Expect = 2e-19
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+ ++ + G CD DG P+P V W + GQV+ +++T +
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKST 71
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I+ A+D G Y V NS E T+ ++
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 35.8 bits (83), Expect = 0.006
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
K+ I V+ G Y+ N G+ TL
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSVVVENSEGKQ-EAEFTLT 103
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 89.5 bits (222), Expect = 2e-19
Identities = 43/244 (17%), Positives = 73/244 (29%), Gaps = 41/244 (16%)
Query: 9 YELNKNMLTIKRVEPERL-----GAYTCQA-YNGLGRAVSWTVTLQALPSEKVADPNAID 62
+L L I+ + R G Y C+A G +S T + VA P
Sbjct: 72 QQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM------VAGPLRFL 125
Query: 63 YGTILSSAFPSESAS----------PVVT-----QTTTTTTEATSPHVY----------- 96
T +AF ++ P + Q + V
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185
Query: 97 ---AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV 153
+ + C + ++ + G + + G D + C V
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV 245
Query: 154 DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAV 213
GYP P W + +VI+ Y + + L I+ DSG Y CV + + +
Sbjct: 246 SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 214 TIRV 217
+ V
Sbjct: 306 ELTV 309
Score = 86.8 bits (215), Expect = 2e-18
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
LVP DI C V G P+P V W K+G V+ +++I + L
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD-YFQIVGGSNLR 368
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I +D G Y+CVA N + +++ + V
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 66.0 bits (161), Expect = 9e-12
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESN--- 183
+ V G ++ + C + +P + W KDG ++ + N
Sbjct: 20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSL 79
Query: 184 ---RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ ++ + D G Y+C AS + + T +V
Sbjct: 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116
Score = 38.3 bits (89), Expect = 0.006
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 2 IQVRSENYELNKN-MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
IQ+RS+ Y L L I V + G YTC +S + L
Sbjct: 262 IQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELT 308
Score = 34.0 bits (78), Expect = 0.10
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + L I V G Y C A N G + L
Sbjct: 362 VGGSNLRILGVVKSDEGFYQCVAENEAGN-AQSSAQLI 398
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 87.6 bits (217), Expect = 3e-19
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRL 185
+ Q F G D I CDV P + W G+ VI V + + +N L
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I TD G YRC + N I+V
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 79.5 bits (196), Expect = 1e-16
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHINQA 190
++ +G +++ CD DG+P P + W KDG+ IEN+ H +S+ L I
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 261
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
+ D EY C+A N + ++ ++V
Sbjct: 262 DKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 71.1 bits (174), Expect = 9e-14
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYK-DGQVIENDGVHYRITESN----R 184
+V+I VG C V G + W+ +G+ + + + ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 185 LHINQANATDSGEYRCVASNSYTSDENA-VTIRV 217
L I AN D+G Y+CV + + A V +++
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 38.3 bits (89), Expect = 0.005
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
LTI + G Y C G TV ++
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99
Score = 36.0 bits (83), Expect = 0.026
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW---TVTLQALPS 52
L+ N L I+ ++ G Y C+ +++ V + P+
Sbjct: 152 LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT 196
Score = 34.9 bits (80), Expect = 0.061
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI+ V+ Y C A N G ++ L+
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLK 287
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 84.9 bits (210), Expect = 3e-19
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
+ + G +++ C G P P + W+++G++IE + + + L +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
+D G Y C A+N DE ++V
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 73.3 bits (180), Expect = 3e-15
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE----NDGVHYRITESNR----- 184
I L+ + +++ CD +G PIP++ W + + + RI +
Sbjct: 99 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 158
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
LHI +DSG Y C A++ + ++ + +E
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 34.8 bits (80), Expect = 0.037
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L IK V+ G Y C+A + +G ++ L
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLD 190
Score = 34.8 bits (80), Expect = 0.042
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + LT++ + G Y C+A N G LQ
Sbjct: 54 KGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQ 91
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 84.8 bits (210), Expect = 3e-19
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQAN 191
+ G +SI G P P + W K +I+N+G HY++ + + N
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVTRSFTSLVFPNGVE 169
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
D+G Y A N + D+ V + V
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 84.8 bits (210), Expect = 4e-19
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQA 190
L S+ ++ C V G+P P V WY+ G+ I DG+ YRI E +L I
Sbjct: 10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVE 218
D+ Y+ A+N S ++ VE
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 34.7 bits (80), Expect = 0.045
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN 59
R + ++ + L I V + Y +A N G T +L+ K+ P
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPK 106
Score = 30.8 bits (70), Expect = 0.68
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
++ VE + G Y A N G TV L
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGID-QKTVEL 193
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 82.4 bits (204), Expect = 4e-19
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQ 189
+++ G + + C + P P++FW ++ ++++ + + + N L I
Sbjct: 20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKD 79
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGI--FIHP 224
N D+G Y A N + V P
Sbjct: 80 VNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 34.7 bits (80), Expect = 0.018
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKV 55
L IK V + G YT A N G + + + A P++ +
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 90.0 bits (223), Expect = 5e-19
Identities = 38/236 (16%), Positives = 69/236 (29%), Gaps = 45/236 (19%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQ-----ALPSEKVADPNAIDYGTILSS 69
L I + G+YTCQA+N + T+ P + N ++ ++
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL 309
Query: 70 AFPSESASPVVT-----QTTTTTTEATSPHVYAALT------------HCVPWSNVCLFG 112
E + Q+ + + LT C
Sbjct: 310 TCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG--------- 360
Query: 113 ARSGYLKETQNGGYLV----PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
++ + + L P I+ + G ++S+ C P Q W DG
Sbjct: 361 IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN 420
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224
+ ++ L I+ +SG Y C A+NS + + P
Sbjct: 421 IQQHTQ---------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467
Score = 88.9 bits (220), Expect = 1e-18
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 43/228 (18%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA---VSWTVTLQALPSEKVADPN---AIDYGTILSS 69
L I + + G YTCQA N T+T+ A + N ++ ++
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 487
Query: 70 AFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSN----------------VCLFGA 113
E+ + + SP + + N VC
Sbjct: 488 TCEPEAQNTTYLWWVNGQSLPVSPRLQ------LSNGNRTLTLFNVTRNDARAYVCG--I 539
Query: 114 RSGYLKETQNGGYLV----PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV 169
++ + L P I+ + G+++++ C P PQ W +G
Sbjct: 540 QNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIP 599
Query: 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
++ L I + ++G Y C SN T N++ +
Sbjct: 600 QQHTQ---------VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 83.5 bits (206), Expect = 5e-17
Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 22/222 (9%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL--PSEKVADPNAIDY--GTIL 67
+ LT+ V +G Y C N L S V L L P + P+ Y G L
Sbjct: 340 DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNL 399
Query: 68 S-----SAFPSES------ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSG 116
S ++ P + + T + + L C ++ S
Sbjct: 400 SLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKN--SGLYTCQANNSA---SGHSR 454
Query: 117 YLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH 176
+T +P + ++ ++ C+ + W+ +GQ +
Sbjct: 455 TTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRL 513
Query: 177 YRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
+ L + D+ Y C NS +++ + VT+ V
Sbjct: 514 QLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Score = 78.5 bits (193), Expect = 2e-15
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P I+ + G ++++ C P Q W+ +G ++ L I
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ---------ELFIP 253
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVE 218
+SG Y C A NS T +
Sbjct: 254 NITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Score = 75.0 bits (184), Expect = 2e-14
Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 38/226 (16%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILS-SAFPSE 74
LT+ V +Y C+ N + S +V L V + L+ S E
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILN------VLYGPDAPTISPLNTSYRSGE 219
Query: 75 SAS----------PVVT-----QTTTTTTEATSPHV-------YAALTHCVPWSNVCLFG 112
+ + + +T E P++ Y C N
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYT----CQA-HNSDTGL 274
Query: 113 ARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172
R+ T P + + +++ C+ + + W+ + Q +
Sbjct: 275 NRTTVTTITVYAEPPKPFITS--NNSNPVEDEDAVALTCEPEIQNTTYL-WWVNNQSLPV 331
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
++ L + D G Y C N + D + V + V
Sbjct: 332 SPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
Score = 70.4 bits (172), Expect = 7e-13
Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
+P + ++ ++ C+ + W+ + Q + + L
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLT 167
Query: 187 INQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
+ D+ Y+C N ++ ++V + V
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNV 199
Score = 60.4 bits (146), Expect = 9e-10
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 134 ITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH--------------- 176
+T+E+ F V G ++ + + WYK +V N +
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61
Query: 177 ---YRITESNRLHINQANATDSGEYRCVASNSYTSDENA 212
I + L I D+G Y S +E A
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEA 100
Score = 35.3 bits (81), Expect = 0.052
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
L I+ + G YT T + P
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL 110
Score = 33.8 bits (77), Expect = 0.17
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+L I ++ P G Y C N + ++
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGR-NNSIVKS 637
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 81.3 bits (201), Expect = 5e-19
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
G++ + C V G P P V W K GQ + L + A
Sbjct: 19 FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE-RLSFPADGAEHGLLLTAAL 77
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
TD+G Y C A N+ A + V
Sbjct: 78 PTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 33.5 bits (77), Expect = 0.035
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW-TVTLQALP 51
+ ++ L + P G Y C+A N G A + VT+ P
Sbjct: 64 ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 88.0 bits (218), Expect = 6e-19
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
+ +GSD+ C G P P V W +DGQ + + L
Sbjct: 292 HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN--RIEVSGGELR 349
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
++ DSG Y+CVA N + + + + V+
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 84.9 bits (210), Expect = 6e-18
Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 36/238 (15%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA--LPSEKVADPNAID----YGT 65
+++ V+ + G+Y C A N G VS +L+ L + + + +G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 66 ILSSAFPSESASPVVT--QTTTTTTEATSPHVYAALT-----------------HCVPWS 106
+ + + P + + + T C +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA-T 178
Query: 107 NVCLFGARSGYLKETQ------NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ 160
+ F +S + K +Q + P G +++ C G P+PQ
Sbjct: 179 SHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ 238
Query: 161 VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ W K ++ LHI + D G Y C A N D I +
Sbjct: 239 IKWRKLD----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 69.5 bits (170), Expect = 6e-13
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 135 TLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQ--VIENDGVHYRITESNRLHINQAN 191
+ G + C YP W + I DG + + L+I +
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 166
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
A+D G Y C A++ +V + + +
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Score = 69.1 bits (169), Expect = 7e-13
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNRLHINQANATDSGEYR 199
+++ C P W +G ++ YR+ + + N A D+G Y+
Sbjct: 19 GSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 200 CVASNSY-TSDENAVTIRVEGI 220
CVA+N+ T ++R +
Sbjct: 79 CVATNARGTVVSREASLRFGFL 100
Score = 39.5 bits (92), Expect = 0.002
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
+ ++ +L I+ V+ E G Y C+A N GR + + A P
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD 296
Score = 37.1 bits (86), Expect = 0.012
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
E++ L ++ E G Y C A N G V + L
Sbjct: 338 QNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYASAELT 379
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 81.2 bits (201), Expect = 6e-19
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
+ V G + C ++ Y QV WY + +EN Y IT + L++
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE-KYEITYEDGVAILYVKDIT 66
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGI 220
D G YRC N Y D + + V+G+
Sbjct: 67 KLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
Score = 36.9 bits (86), Expect = 0.002
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 6 SENYELNKNM----LTIKRVEPERLGAYTCQAYNGLGRAVS 42
SE YE+ L +K + G Y C+ N G S
Sbjct: 46 SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS 86
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 88.1 bits (218), Expect = 6e-19
Identities = 46/258 (17%), Positives = 72/258 (27%), Gaps = 42/258 (16%)
Query: 3 QVRSENYELNKNMLTIKRVEPERL------GAYTCQAYNGLGRAVSWTVTLQAL----PS 52
V + L E Y C A N G +S V ++A+
Sbjct: 48 DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 107
Query: 53 EKVADPNAIDYGTI-LSSAFPSESASPVVT-------QTTTTTTEATSPHVYAALT---- 100
V + I + + PS A V + +
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167
Query: 101 -------------HCV---PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVG 144
C + A G L T+ P + + V
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNR-LHINQANATDSGEYRC 200
IS+ C G+P P WYK + ++ R+ + + L I A DSG+Y C
Sbjct: 228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287
Query: 201 VASNSYTSDENAVTIRVE 218
V +NS + + V
Sbjct: 288 VVNNSVGGESVETVLTVT 305
Score = 83.5 bits (206), Expect = 2e-17
Identities = 43/235 (18%), Positives = 72/235 (30%), Gaps = 46/235 (19%)
Query: 16 LTIKRVEPE-RLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSE 74
L I+ V PE +Y C+ + L + T L + +P + + +
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV---ITEPISSSAPRTPA--LVQK 220
Query: 75 SASPVVTQTTTTTTEAT---SPHVY-------AALTHCVPWSNVCLFGARSGYLKETQ-- 122
+V T + A +P V ++ + + +K+
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 123 -NGGY-------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
+G Y P+ I TQ G C G PI V
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 340
Query: 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
W KDG+ I + + L I D G Y+C N S E + +++
Sbjct: 341 WMKDGKAIGHSE--------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 66.1 bits (161), Expect = 9e-12
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATD- 194
F + I C G P+P++ W + DG + + +I+ +L A D
Sbjct: 12 NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDY 71
Query: 195 -----SGEYRCVASNSY---TSDENAVTIRVEGIFI 222
+ Y C+A N + S + V V +
Sbjct: 72 RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 107
Score = 38.4 bits (89), Expect = 0.005
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
V ++ + L IK E G Y C N +G V +T+ A S
Sbjct: 260 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS 309
Score = 33.0 bits (75), Expect = 0.26
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
++++L I+ V+ E G Y C N A + L+
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESA-EASAELK 386
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 88.0 bits (218), Expect = 6e-19
Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 51/241 (21%)
Query: 16 LTIKRVEPE-RLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFP 72
L V + Y+C A + TL+ L + VA+ + +
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTP----SFMYPQGT 228
Query: 73 SESASPVVTQTTTTTTEAT---SPHVYAALTHCVPW--------SNVCLFGARSGYL--- 118
+ S + A+ +P + W S+ F + L
Sbjct: 229 ASSQMVLRGMDLLLECIASGVPTPDIA--------WYKKGGDLPSDKAKFENFNKALRIT 280
Query: 119 --KETQNGGY-------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYP 157
E +G Y + + G D + C +G P
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP 340
Query: 158 IPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASNSYTSDENAVTIR 216
P V W +G+ +++ + + + + Y+C SN + +
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Query: 217 V 217
V
Sbjct: 401 V 401
Score = 83.8 bits (207), Expect = 2e-17
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
T +Q+ G D+ + C G P P + WYK G + +D + L I + D
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA-LRITNVSEED 286
Query: 195 SGEYRCVASNSYTSDENAVTIRVE 218
SGEY C+ASN S + +++RV+
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVK 310
Score = 70.3 bits (172), Expect = 4e-13
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
P+ L+ V G+ +++ C+ G P P +FW + L+
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174
Query: 187 INQANATDS-GEYRCVASNSYTSD---ENAVTIRV 217
+ D +Y C A +T +N T++V
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Score = 68.4 bits (167), Expect = 2e-12
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNR-LHINQANA- 192
+ + +I I C+ G P P W ++ + + + L I+ +
Sbjct: 24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGG 83
Query: 193 ---TDSGEYRCVASNSY-TSDENAVTIRVEGI 220
GEY+C A N + T+ N + ++V
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
Score = 38.3 bits (89), Expect = 0.006
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
+ +E L I V E G Y C A N +G + +V ++A P
Sbjct: 263 LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY 314
Score = 36.0 bits (83), Expect = 0.030
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ N E+ + + + + Y C N G + +
Sbjct: 358 PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG-YLLANAFVS 400
Score = 33.3 bits (76), Expect = 0.19
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 16 LTIKRVEPERL----GAYTCQAYNGLGRAVSWTVTLQ 48
L I R G Y C A N G A+S + LQ
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ 111
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 84.0 bits (208), Expect = 7e-19
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESN---RLHINQA 190
L++ V GS + + G+P+P+V W++DGQVI + +I+ S+ +L I
Sbjct: 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+SG Y A+N + + V+ P+
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
Score = 83.6 bits (207), Expect = 9e-19
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
L++ GS + + V G P P V +Y+DG I++ ++I++ L I +A
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL-DFQISQEGDLYSLLIAEAYP 168
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVE 218
DSG Y A+NS + + V+
Sbjct: 169 EDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 36.2 bits (84), Expect = 0.012
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L I PE G Y+ A N +GRA + T L
Sbjct: 161 LLIAEAYPEDSGTYSVNATNSVGRA-TSTAEL 191
Score = 35.9 bits (83), Expect = 0.018
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + LTI V G Y+ +A NG G+A S T L
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS-TAELL 96
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 84.2 bits (208), Expect = 7e-19
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P + + + +G ++++ C G P+P + W K + + + T L I
Sbjct: 112 YPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST--AEISTSGAVLKI 169
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
D G Y C A N D++ I V+
Sbjct: 170 FNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 64.9 bits (158), Expect = 3e-12
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQ--VIENDGVHYRIT 180
GYL P E +V G + + CD + W + I D +
Sbjct: 5 GYLDPFPPEERPEVRVK-EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ 63
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ L+I A+D G Y C S+ +
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
Score = 37.6 bits (87), Expect = 0.005
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + +L I ++ E G Y C+A N G+ +
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKH-QARIY 198
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 80.2 bits (198), Expect = 1e-18
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P V + +E+ + G + + C + + W +DG + RIT + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN-RTRITGE-EVEVR 65
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
+ DSG Y CV S+ SD ++ V
Sbjct: 66 DSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 39.8 bits (93), Expect = 2e-04
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
S + + ++ P G Y C + G + ++
Sbjct: 52 SNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSVN 93
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 85.2 bits (211), Expect = 1e-18
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
P G+D+ + C++ G P QV W+KD + + + Y+I N
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLT 248
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+HI ++ D GEY+C ASN S +I ++
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 84.8 bits (210), Expect = 2e-18
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN- 183
G + P ++ + +G + C V G ++ W KD + I G +Y++T
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVEN 59
Query: 184 --RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + D+G+Y C ASN D + + V+
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 84.0 bits (208), Expect = 3e-18
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANAT 193
+++ C + G P +V WYKD I+ +R++ L + +
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVE 165
Query: 194 DSGEYRCVASNSYTSDENAVTIRVE 218
DSG+Y C A N+ S ++ +++V+
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVK 190
Score = 35.9 bits (83), Expect = 0.025
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS 52
N LT+ +V G YTC A N G+ S + +Q P
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR 100
Score = 35.9 bits (83), Expect = 0.026
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
++ SEN + I V+ +G Y C+A N +G + ++
Sbjct: 239 YKIMSEN---FLTSIHILNVDSADIGEYQCKASNDVGSY-TCVGSI 280
Score = 35.1 bits (81), Expect = 0.046
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
+ + +L + + E G YTC+A+N G A S ++ ++ P
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 194
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 85.3 bits (211), Expect = 1e-18
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRL 185
+ + Q F G D + C V P P V W + + + + + +N L
Sbjct: 96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I N +D G YRC + + I V
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Score = 80.6 bits (199), Expect = 5e-17
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
G +++ C G P P + W+++G++IE + + + L + +D
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG 260
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y C A+N DE ++V
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQV 282
Score = 77.2 bits (190), Expect = 9e-16
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
+ ++V I+L VG C G P ++ G+ I + + +
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRS 60
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENA-VTIRVE 218
RL I AN D+G YRC A+++ + A V + +
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI E G Y CQA + G+ TV L+
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94
Score = 34.4 bits (79), Expect = 0.068
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPS 52
LT++ + G Y C+A N G L
Sbjct: 250 LTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFVQHH 287
Score = 29.4 bits (66), Expect = 2.6
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L N L I + G Y C+ + + +
Sbjct: 150 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII 186
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 80.1 bits (198), Expect = 2e-18
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEY 198
G ++ C V G P P+++W+KDG+ I HY I LH + D G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 199 RCVASNSYTSDENAVTIRVEGIFIHPS 225
+A+N + V+ + PS
Sbjct: 82 TIMAANPQGRISCTGRLMVQAVNSGPS 108
Score = 35.0 bits (81), Expect = 0.012
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSW-TVTLQALPSE 53
L + G YT A N GR + +QA+ S
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 79.7 bits (197), Expect = 2e-18
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ +E+ + G + + C + + W +DG + RIT + + +
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN-RTRITGE-EVEVQDS 61
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVE 218
DSG Y CV S+ SD ++ V
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 38.5 bits (90), Expect = 5e-04
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
S + + ++ P G Y C + G ++V +
Sbjct: 46 SNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 82.5 bits (204), Expect = 2e-18
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
+ K+ G +PC G P P V W K + + + ES L
Sbjct: 98 KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS-RIAVLESGSLR 156
Query: 187 INQANATDSGEYRCVASNSYTSDE-NAVTIRVE 218
I+ D+G+YRCVA NS + V + VE
Sbjct: 157 IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 79.8 bits (197), Expect = 2e-17
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 128 VPVKVNIT--LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NR 184
+P IT LET V + C V+ YP P++ W ++ +I+ Y I E+
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 185 LHINQANATDSGEYRCVASNSY-TSDENAVTIRV 217
L I +D G Y C A+N + E+ ++V
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L L I V+ E G Y C A N LG A S V L+
Sbjct: 150 LESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 2 IQVRSENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
I++ Y + N +LTI VE G Y C A NG+G AV LQ
Sbjct: 48 IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ 96
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 78.5 bits (194), Expect = 5e-18
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
E G + V G P P V WY +G+ +++D +H I L
Sbjct: 11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219
A+D+G Y CVA N V + V
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 35.8 bits (83), Expect = 0.005
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
E + L + V GAY C A N G A ++TV L L E
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVLAKE 100
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 78.9 bits (195), Expect = 5e-18
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYR 199
G + C V G P P + W DG+ + D H + N L I + D+G Y
Sbjct: 23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYT 82
Query: 200 CVASNSYTSDENAVTIRVEG 219
C+A+N + ++ + V
Sbjct: 83 CIATNRAGQNSFSLELVVAA 102
Score = 34.3 bits (79), Expect = 0.021
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
+ E + L I+ V G YTC A N G+ S+++ L E
Sbjct: 56 HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQN-SFSLELVVAAKE 104
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 82.2 bits (203), Expect = 5e-18
Identities = 30/217 (13%), Positives = 48/217 (22%), Gaps = 72/217 (33%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
N + L V + G Y C+ N S L V D
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD------VCDI------------- 103
Query: 72 PSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVK 131
P Q + + + T +
Sbjct: 104 ------PESFQRSVDGVSESKLQICVEPTSQK------------------------LMPG 133
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN 191
+ L+ C G PIP W+K+ + ++ + +
Sbjct: 134 STLVLQ-------------CVAVGSPIPHYQWFKNELPLTHET-------KKLYMVPYVD 173
Query: 192 ATDSGEYRCVASNSY---TSDENAVTIRVEGIFIHPS 225
G Y C N S + + I HP
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
Score = 74.1 bits (182), Expect = 3e-15
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 127 LVPVKVNITL--ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
LVP IT+ E++ G + + C G+P Q W+K + I N ++
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTSE 66
Query: 185 LHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
L N + D+G Y C +N++T + + V
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 86.0 bits (213), Expect = 6e-18
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--RL 185
VP ++ + +G + C V G ++ W KD + I G + N L
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 255
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEG--IFIHP 224
+ + D+G+Y C ASN D + + V+ FI
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKK 296
Score = 85.6 bits (212), Expect = 9e-18
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
+P L+ +G ++ C ++G QV WYKDG+++++D + + + +
Sbjct: 97 ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDA-NLQTSFIHN 155
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I Q + + G+Y C ASN + ++ + + + P
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199
Score = 82.9 bits (205), Expect = 6e-17
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
P G+D+ + C++ G P QV W+KD + + + Y+I N
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLT 440
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+HI ++ D GEY+C ASN SD +I ++
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 81.8 bits (202), Expect = 2e-16
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR-LH 186
P + +++ C + G P +V WYKD I E+ ES L
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + DSG+Y C A N+ S ++ +++V+
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
Score = 81.4 bits (201), Expect = 2e-16
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
P LE +G I++ C VDG P ++ WYK+ + + Y++ N L
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP-AYKMQFKNNVASL 63
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230
IN+ + +D GEY C A NS + ++ + ++ + PS
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKL 108
Score = 79.1 bits (195), Expect = 9e-16
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
P + L VG ++ + ++G V W+KD I + + I+ S
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L ++A ++G+Y C N + E T+ V
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS--EKVADPNAIDYG 64
N LT+ +V G YTC A N G+ S + +Q P +K+ +
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQD 306
Score = 37.9 bits (88), Expect = 0.008
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+Y N L R EP G YTCQ N G TL
Sbjct: 525 IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ-ECFATL 566
Score = 37.5 bits (87), Expect = 0.011
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ I V+ +G Y C+A N +G + ++
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSD-TCVGSIT 473
Score = 35.5 bits (82), Expect = 0.050
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
++ N L I +V+ +G YTC+A N +G S + L
Sbjct: 55 QFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS-SAVLV 94
Score = 33.6 bits (77), Expect = 0.17
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALP 51
L I + + +G Y C A N LG A S +TL
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE 195
Score = 32.9 bits (75), Expect = 0.28
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
+ +L + + E G YTC+A+N G A S ++ ++ P
Sbjct: 345 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 386
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 81.0 bits (200), Expect = 1e-17
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-----RLHINQAN 191
G+ ++I C+V YP + W++DGQ++ + + I N L + +
Sbjct: 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN-YSNIKIYNTPSASYLEVTPDS 84
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRV 217
D G Y C A N + +
Sbjct: 85 ENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 37.5 bits (87), Expect = 0.005
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 20/77 (25%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
+ + L + G Y C A N +G+ S L AD
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQE-SLEFIL------VQADT------------- 113
Query: 72 PSESASPVVTQTTTTTT 88
PS + V ++T
Sbjct: 114 PSSPSIDQVEPYSSTAQ 130
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 82.9 bits (205), Expect = 1e-17
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQAN 191
L S+ ++ C V G+P P V WY+ G+ I DG+ YRI E +L I
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
D+ Y+ A+N S ++ VE
Sbjct: 71 DDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 81.3 bits (201), Expect = 4e-17
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQAN 191
+ G +SI G P P + W K +I+N+G HY++ + + N
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVTRSFTSLVFPNGVE 169
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219
D+G Y A N + D+ V + V
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 35.1 bits (81), Expect = 0.045
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
+ R + ++ + L I V + Y +A N G S T +L+ K+ P
Sbjct: 51 KYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLP 105
Score = 32.4 bits (74), Expect = 0.29
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPS 52
+ +++ VE + G Y A N G TV L +P
Sbjct: 151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADVPD 200
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 77.5 bits (191), Expect = 1e-17
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQA 190
+ + + C G P+P + W K+G+ + + N L +
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
+D G Y CV N Y S + + V
Sbjct: 73 VPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 34.7 bits (80), Expect = 0.013
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ L ++ V P G YTC N G ++ T L
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLD 98
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 77.1 bits (190), Expect = 1e-17
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
L V++ + E G +++ C+V P PQ+ W KDG + + S L
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-------LPPSPVLI 60
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + D G Y CVA++S + + + +
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 35.1 bits (81), Expect = 0.009
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALP 51
+L + + P+ G Y+C A + S V++ +
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 80.1 bits (198), Expect = 1e-17
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH--- 186
E VGS + + G P+P + W+ ++++N + I +
Sbjct: 104 HPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE-NITIENTEHYTHLV 162
Query: 187 -INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
N T +G+Y+ SN + + + + + ++
Sbjct: 163 MKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 78.6 bits (194), Expect = 5e-17
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQAN 191
++ +G + C + G P+P + WY+ G+ + Y+++ R L +
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR-KYKMSSDGRTHTLTVMTEE 71
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
D G Y C+A+N E + + ++
Sbjct: 72 QEDEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 33.1 bits (76), Expect = 0.13
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADP 58
LT+ E E G YTC A N +G S + LQA P P
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYP 108
Score = 28.5 bits (64), Expect = 3.9
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 12 NKNMLTIKRVEPER-LGAYTCQAYNGLGRAVS 42
+ L +K V+ + G Y Q N G +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA 188
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 84.0 bits (207), Expect = 2e-17
Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 27/242 (11%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDY 63
+ + I ++ + G Y + + +TV+++ + P
Sbjct: 94 HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKM 153
Query: 64 GTILSSAFPSESAS---PVVT--------QTTTTTTEATSPHVYAALTHCVPWSNVCLFG 112
A S S P+V ++ + A L C
Sbjct: 154 EN--QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC-- 209
Query: 113 ARSGYLKETQNGGYL-VPVKVNITLETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVI 170
AR+ +E + + TL VG + I C V + W + + +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 171 ENDGVHYRITESNR--------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
E T S ++ D+G Y C +S + VTI +G
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL-VTIVEKGFIN 328
Query: 223 HP 224
Sbjct: 329 AT 330
Score = 78.2 bits (192), Expect = 1e-15
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQ 189
V + I++ VD W + + + I +
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK 109
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEG 219
T +GEY + T+ T+ +
Sbjct: 110 MTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Score = 77.8 bits (191), Expect = 2e-15
Identities = 26/230 (11%), Positives = 58/230 (25%), Gaps = 27/230 (11%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALPSEKVADPNAIDYGTI-L 67
+ K + + C A N LGR + +T+ L P + + +
Sbjct: 191 VKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 68 SSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGY- 126
+ +T + + T+ + + + A + G Y
Sbjct: 248 RCKAVHVNHGFGLTWELENK-ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 127 ---------------LVPVKVNITLETQVF--GVGSDISIPCDVDGYPIPQVFWYKDGQV 169
+ +N T ++ + + YP + W +
Sbjct: 307 CSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Query: 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ + + + GEY A N T+ +
Sbjct: 367 FPCE--QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Score = 37.0 bits (85), Expect = 0.014
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ N ++ + G Y A N + + TL
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLN 411
Score = 33.5 bits (76), Expect = 0.16
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTV 45
M + + + V G YTC + ++ T+
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTI 321
Score = 33.1 bits (75), Expect = 0.24
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
D + N N ++ S Y V+ + + +R +
Sbjct: 6 DLPVIKCVLINHK-NNDSSVGKSSSYPMVSESPE---DLGCALRPQS 48
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 76.2 bits (188), Expect = 2e-17
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
+++ + +Q GS + + C G PIP W+K+ + ++ +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVP 55
Query: 189 QANATDSGEYRCVASNSYTSDE-NAVTIRVE 218
+ G Y C N S + V I ++
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 41.2 bits (97), Expect = 5e-05
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN 59
K + + V+ E G Y C YN S V + + + N
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII------IDELN 89
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 79.5 bits (196), Expect = 3e-17
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-----LHINQA 190
+ +V ++ C G P P++ W+KD ++ + RI + L I Q+
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS 174
Query: 191 NATDSGEYRCVASNSYTSDENA-VTIRVEG 219
+D G+Y CVA+NS + +A + V G
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYVRG 204
Score = 76.8 bits (189), Expect = 3e-16
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI----NQA 190
T Q G S C G P P++ W K G+ + N + +
Sbjct: 12 TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232
D Y CVASN+ + + V P R P
Sbjct: 72 TPRDEAIYECVASNNVGEISVSTRLTVLREDQIP--RGFPTI 111
Score = 37.9 bits (88), Expect = 0.004
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPSEK 54
L I++ E G Y C A N G S L +
Sbjct: 169 LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
Score = 30.9 bits (70), Expect = 0.83
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 16 LTIKRVEPER-LGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADP 58
L I+ + R Y C A N +G VS +T+ P
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFP 109
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 80.7 bits (199), Expect = 4e-17
Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
+ + + ++VF G +++ C + V +Y++G+ + ++ L I
Sbjct: 82 RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------HWNSNLTI 135
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ N + +G Y C + +++ V+ +F P
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Score = 64.6 bits (157), Expect = 9e-12
Identities = 32/225 (14%), Positives = 60/225 (26%), Gaps = 33/225 (14%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYG--TILSSAFPS 73
I G Y CQ GR+ + + G L
Sbjct: 50 YRITSASVNDSGEYRCQRGLS-GRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWK 108
Query: 74 ESASPVVT--------QTTTTTTEATSPHVYAALT---HCVPWSNVCLFGARSGYLKETQ 122
+ V + + T + HC S + T
Sbjct: 109 DKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV 165
Query: 123 NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-----QVFWYKDGQVIENDGVHY 177
+ PV +N ++ + + G+ +++ C+ +Y + +
Sbjct: 166 KELFPAPV-LNASVTSPLL-EGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN--- 220
Query: 178 RITESNRLHINQANATDSGEYRCVASN---SYTSDENAVTIRVEG 219
S+ I A DSG Y C A+ + + ++V G
Sbjct: 221 ---TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 63.4 bits (154), Expect = 2e-11
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 134 ITLE---TQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQ 189
ITL+ VF +++ C+V P W+ +G + T + I
Sbjct: 4 ITLQPPWVSVF-QEETVTLHCEVLHLPGSSSTQWFLNGTATQ--------TSTPSYRITS 54
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
A+ DSGEYRC S SD + I + + S
Sbjct: 55 ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVS 90
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 77.6 bits (191), Expect = 4e-17
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
Query: 97 AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156
++ T + N +L+E V T+ GS C V+GY
Sbjct: 12 SSPTSPI---NANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGY 68
Query: 157 PIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVASNSYTSDENA 212
P P+V W+KD ++ H++I L I++ D +Y C A NS
Sbjct: 69 PDPEVMWFKDDNPVKESR-HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127
Query: 213 VTIRVEGI 220
+ VE +
Sbjct: 128 AELLVETM 135
Score = 34.4 bits (79), Expect = 0.031
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEK 54
LTI V + YTC+A N LG A + + ++ + E
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEG 139
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 80.8 bits (199), Expect = 4e-17
Identities = 34/249 (13%), Positives = 65/249 (26%), Gaps = 30/249 (12%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW-TVTLQALPSEKVADPNAI 61
+ + E + LT + + G Y C + + ++ +
Sbjct: 40 PYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEV 99
Query: 62 DYG----TILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTH---------------- 101
+L + V+ + VY
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY 159
Query: 102 -CVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ 160
C N + S + N + P ++ + V G I C +
Sbjct: 160 VCKTMVNGR--ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGF 217
Query: 161 VFWYKDGQVIENDGVHYRITESNR-----LHINQANATDSGEYRCVASNSYTSDENAVTI 215
K G ++ ++ L +N + D+G Y CVASN + +
Sbjct: 218 NVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Query: 216 RV-EGIFIH 223
+V E H
Sbjct: 278 QVVESHHHH 286
Score = 69.6 bits (170), Expect = 3e-13
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPI-PQVFWYKDGQVIENDGVHYRITESNRLHI 187
N+ + G + +PC + + V ++G Y + I
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFII 148
Query: 188 NQANATDSGEYRCVASNS-YTSDENAVTIRVEGIFIHP 224
+A DS Y C + S + ++V + P
Sbjct: 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
Score = 60.3 bits (146), Expect = 3e-10
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
+ + V G +++ C +G V W + + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE---SPGSTLTTR 56
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHPS 225
A ++G YRC + + + V+ + +
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA 96
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 80.9 bits (199), Expect = 4e-17
Identities = 43/247 (17%), Positives = 71/247 (28%), Gaps = 49/247 (19%)
Query: 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPS 73
++LT+ + G Y C + G L V DP P+
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI----FVPDPT--------VGFLPN 98
Query: 74 ESASPVVTQTTTTTT----EATSPHVYAALTHCVPWSNV-CLFGARSGYLKETQNGGYL- 127
++ + T T T P + L + + + G+ ++ Y+
Sbjct: 99 DAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYIC 158
Query: 128 ---------------------VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD 166
+ V++ V G +I++ C V G + W
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP 218
Query: 167 GQVIENDGVHY-------RITESNRLHINQANATDSGEYRCVASNSY--TSDENAVTIRV 217
+ + LHI A DSG Y C + S DE A+ I V
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Query: 218 -EGIFIH 223
E H
Sbjct: 279 VESGHHH 285
Score = 54.7 bits (131), Expect = 3e-08
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRL 185
+ P + L V S + C V W + Q + + S+ L
Sbjct: 3 VTPPGPELVLN-----VSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVL 53
Query: 186 HINQANATDSGEYRCVASNSYTSD-ENAVTIRV 217
+ D+GEY C ++S + + + +
Sbjct: 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 78.8 bits (194), Expect = 6e-17
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
LVP +G+ + C DG P + W+KDG V+ + R ++
Sbjct: 105 LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 185 --------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
L + +A+D+GEY C A N Y + + +R+E +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 68.1 bits (166), Expect = 3e-13
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN----------DGVHYR 178
V V+ + + + + C G+ P+V W D
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ D+G Y C+ S + V +++
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
Score = 35.7 bits (82), Expect = 0.019
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQAL 50
+ +T K V E G YTC G + V L L
Sbjct: 59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
Score = 34.9 bits (80), Expect = 0.037
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQAL 50
L + G Y+C+A NG G S V ++A+
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 78.4 bits (193), Expect = 7e-17
Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 62/218 (28%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
+ + + + +++++ E G YT Q +G S TV L +K+
Sbjct: 52 MHIDRNTGIIE---MFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEF 107
Query: 62 DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKET 121
P + +
Sbjct: 108 ------QRQEWIRKQGPHFVEYLSWE---------------------------------- 127
Query: 122 QNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE 181
V + N+ L+ +V + + WYKD + I D H
Sbjct: 128 ------VTGECNVLLKCKVANI------------KKETHIVWYKDEREISVDEKHDFKDG 169
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L I + + D+G Y + + D++ + + E
Sbjct: 170 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 67.7 bits (165), Expect = 4e-13
Identities = 7/73 (9%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-----RLHINQANATDSGEYRCVASNS 205
+V + + + I Y++ + + + D G Y +
Sbjct: 25 QAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG 83
Query: 206 YTSDENAVTIRVE 218
++ + V + +
Sbjct: 84 KATNHSTVVLVGD 96
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 79.2 bits (195), Expect = 7e-17
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYR 199
+ + C G P+P + W K+G+ + + N L + +D G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 200 CVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIV 239
CV N Y S + + V H L AN +V
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 132
Score = 67.2 bits (164), Expect = 7e-13
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV----IENDGVHY------ 177
P+ VG D+ C V P + W K + DG+ Y
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 178 ---RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + L + D+GEY C SN + + V
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 35.6 bits (82), Expect = 0.028
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
N +L + V G Y C+ N +G+A S +T+
Sbjct: 181 SSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
Score = 34.9 bits (80), Expect = 0.040
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEK 54
L ++ V P G YTC N G ++ + + +
Sbjct: 78 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 82.0 bits (202), Expect = 1e-16
Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 28/242 (11%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTV----TLQALPSE----- 53
++ E E +N ++ E G YTC +GL ++ V L +
Sbjct: 69 EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKE 128
Query: 54 --------KVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALT-HCVP 104
+ DP +Y P + + Y L HC
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV 188
Query: 105 WSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFW 163
+ LK V+++ + + G + ++ C + W
Sbjct: 189 DQEGKSVLSEKFILKVRPAFK--AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW 246
Query: 164 YKDGQVIENDGVHYRITESNR-------LHINQANATDSGEYRCVASNSYTSDENAVTIR 216
++ + + + L I+ A DSG + C A+N++ S T+
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLE 306
Query: 217 VE 218
V
Sbjct: 307 VV 308
Score = 74.7 bits (183), Expect = 3e-14
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 143 VGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNR-------LHINQANATD 194
G ++ + + + +P P+ W + + Y +E+ LH+ + T+
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386
Query: 195 SGEYRCVASNSYTSDENAVTIRVE 218
G Y + SNS + A + V
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVN 410
Score = 72.4 bits (177), Expect = 1e-13
Identities = 41/249 (16%), Positives = 60/249 (24%), Gaps = 45/249 (18%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTIL------- 67
LTI G + C A N G A V+ T+ + +
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334
Query: 68 --SSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGG 125
AFP T + L R LK T+ G
Sbjct: 335 VEYEAFPKPEH--QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR---LKGTEGGT 389
Query: 126 YL-------------VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172
Y V VN E + + + C G+P P + WY +
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQR 449
Query: 173 DGVHYRITESN--------------RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + I+ + +G C A N +
Sbjct: 450 CSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509
Query: 219 G---IFIHP 224
G IHP
Sbjct: 510 GNNKEQIHP 518
Score = 62.4 bits (151), Expect = 2e-10
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 108 VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG 167
+ L ++G + + + G P ++ + VG +I + C G V W +
Sbjct: 15 LLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEI 70
Query: 168 QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHP 224
N+ + N +A AT++G+Y C + ++ ++ + V +F+
Sbjct: 71 LDETNEN------KQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVD 121
Query: 225 S 225
Sbjct: 122 R 122
Score = 56.2 bits (135), Expect = 2e-08
Identities = 10/99 (10%), Positives = 23/99 (23%), Gaps = 2/99 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P K+ + + +D + C + + + + + I
Sbjct: 113 DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 188 -NQANATDSGEYRCVASNSYTSDE-NAVTIRVEGIFIHP 224
+ A C S ++V F
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Score = 37.0 bits (85), Expect = 0.017
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + +I + G C+AYN +G+ S
Sbjct: 461 TLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFA 507
Score = 36.6 bits (84), Expect = 0.023
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ +E+ + L + R++ G YT N A + +
Sbjct: 362 YPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVY 408
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 75.2 bits (185), Expect = 1e-16
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR-----LHINQANATDSG 196
+ + I V G P P + W +GQ + E+ +H + L N+ ++G
Sbjct: 19 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 78
Query: 197 EYRCVASNSYTSDENAVTIRV 217
Y +A N + +
Sbjct: 79 NYTLIAKNPLGTANQTINGHF 99
Score = 36.7 bits (85), Expect = 0.003
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ E+++ L + G YT A N LG A + T+
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGH 98
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 78.4 bits (193), Expect = 2e-16
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEYR 199
+ + C G P P + W K+G+ + I ++ L + +D G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 200 CVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIV 239
CV N + S T+ V H L AN ++
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 128
Score = 69.2 bits (169), Expect = 2e-13
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK----DGQVIENDGVHYR----- 178
P+ Q +GSD+ C V P + W K +G + DG Y
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKS 172
Query: 179 -----ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ RL + + D GEY C A+N E A + V G
Sbjct: 173 WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 35.3 bits (81), Expect = 0.033
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTIL 67
L + V G Y C+A N +G A ++ +++ + + A + G++
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVH 236
Score = 33.4 bits (76), Expect = 0.16
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + L ++ V P G YTC N G + T TL
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLD 105
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 79.1 bits (195), Expect = 2e-16
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ESNRLHINQAN 191
+ + +V ++ C G P P++ W+KD ++ + RI S L I +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 192 ATDSGEYRCVASNSYTSDENA-VTIRVEGIFIHPS 225
TD G+Y CVA+NS ++ + V + P
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR 207
Score = 75.6 bits (186), Expect = 3e-15
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
V + +I + G +++I C G P+P V W + + + + + R +
Sbjct: 204 VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED-DMPV---GRNVL 259
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ DS Y CVA +S E I V+
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Score = 72.5 bits (178), Expect = 3e-14
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
P + + Q+ G S C G P P+V W K G+ + + + +
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 185 -LHINQANAT-DSGEYRCVASNSYTSDENAVTIRVE 218
L I D Y CVA NS + V
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
Score = 34.0 bits (78), Expect = 0.10
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+L L I+ E G Y C A N G S L
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLY 198
Score = 33.6 bits (77), Expect = 0.15
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPS 52
++ + + YTC A + LG + ++LP
Sbjct: 257 NVLELTDVKDSANYTCVAMSSLGVI-EAVAQITVKSLPK 294
Score = 30.6 bits (69), Expect = 1.2
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 16 LTIKRVE-PERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPN 59
L I+ + P Y C A N +G V +T+ PN
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPN 110
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 74.6 bits (183), Expect = 3e-16
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR--------LHINQANATDSG 196
IP VDG P P + W +G V+ E + E L +NQ ++G
Sbjct: 17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 197 EYRCVASNSYTSDENAVTIRV 217
Y +A+N + ++
Sbjct: 77 NYTLLAANPFGQASASIMAAF 97
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNA 60
+ N + L + + G YT A N G+A S ++ + + +P
Sbjct: 50 EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNPFEFNPED 108
Query: 61 IDYGTILSSAFPSESAS 77
T +S P E
Sbjct: 109 PIPDTNSTSGDPVEKKD 125
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 74.7 bits (183), Expect = 3e-16
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH---------------YR 178
+Q VG + + C+ G P+P++ W+ +GQ + Y
Sbjct: 26 QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
++ + I+ D+G Y C ASN + RV+ +
Sbjct: 86 QHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV 127
Score = 35.0 bits (80), Expect = 0.021
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + + ++ + ++I + E G Y C+A N R T +
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN-HLTRAPR 123
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 76.8 bits (189), Expect = 3e-16
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
T+V VG + + C G P P ++W K+ ++ Y + L I + D
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SLKDGFLQIENSREEDQ 175
Query: 196 GEYRCVASNSY---TSDENAVTIRVEGIFIHP 224
G+Y CVA NS S + ++V +
Sbjct: 176 GKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
Score = 70.6 bits (173), Expect = 5e-14
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANAT 193
+ Q VG S C G P P + W K+G+ + Y + E + I +
Sbjct: 12 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 194 ----DSGEYRCVASNSY-TSDENAVTIRV 217
D Y CVA N + T+ +
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTI 100
Score = 41.7 bits (98), Expect = 2e-04
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+ + + Y L L I+ E G Y C A N +G S L
Sbjct: 150 KVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 73.1 bits (180), Expect = 4e-16
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
P + LE Q G D+ + C++ P V W KD + I Y + L
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ-KYDVVCEGTMAML 65
Query: 186 HINQANATDSGEYRCVASNSYTS 208
I A+ D+GEY C S ++
Sbjct: 66 VIRGASLKDAGEYTCEVEASKST 88
Score = 35.4 bits (82), Expect = 0.007
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 6 SENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
S+ Y++ ML I+ + G YTC+ A ++ ++ S
Sbjct: 51 SQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTA---SLHVEEKASG 99
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 79.1 bits (195), Expect = 5e-16
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNR- 184
K G+ I+I CDV P + W +D V+ + + + R
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 185 --LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L I + D G Y C A+N + + +
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD 194
Score = 74.1 bits (182), Expect = 2e-14
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV------HYRITESNR--- 184
I L+ + +++ CD +G PIP++ W + + +
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
LHI +DSG Y C A++ + ++ + +E
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 34.8 bits (80), Expect = 0.071
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVS 42
L IK V+ G Y C+A + +G
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQK 91
Score = 33.2 bits (76), Expect = 0.19
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPS 52
K +L I G Y C A N +G L +PS
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPS 197
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 78.1 bits (192), Expect = 6e-16
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 59/204 (28%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
+ +++++ E G YT Q +G S TV L +
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHS-TVVL------VGDVFKKLQKEAEFQRQEWIRK 220
Query: 76 ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNIT 135
P + + V + N+
Sbjct: 221 QGPHFVEYLSWE----------------------------------------VTGECNVL 240
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
L+ +V + WYKD + I D H L I + + D+
Sbjct: 241 LKCKVAN------------IKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 288
Query: 196 GEYRCVASNSYTSDENAVTIRVEG 219
G Y + + D++ + + E
Sbjct: 289 GIYEVILKDDRGKDKSRLKLVDEA 312
Score = 73.9 bits (181), Expect = 1e-14
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---- 183
V V L ++ G +V + + + I Y++
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRNTGI 165
Query: 184 -RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + + D G Y + ++ + V + +
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 201
Score = 71.2 bits (174), Expect = 1e-13
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+ + ++ CD P + W KD E+ + +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSP-RLEVESKGNKTK 59
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ D G Y C +++ + + E
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEE 93
Score = 39.6 bits (92), Expect = 0.002
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 5 RSENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
S E+ NK +T K + + LG Y+C + G A S+ + + L
Sbjct: 45 DSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95
Score = 35.0 bits (80), Expect = 0.055
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 6 SENYELNKNM--LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
E ++ + L I + G Y + G+ + L
Sbjct: 266 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKL 308
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 72.0 bits (177), Expect = 9e-16
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
L+ G D + C V G P+P++ W +GQ I+ LHI A D
Sbjct: 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-EAGVAELHIQDALPEDH 76
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y C+A N+ + + V
Sbjct: 77 GTYTCLAENALGQVSCSAWVTV 98
Score = 36.1 bits (84), Expect = 0.004
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS 42
IQ E L I+ PE G YTC A N LG+
Sbjct: 52 IQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 76.6 bits (188), Expect = 9e-16
Identities = 38/232 (16%), Positives = 60/232 (25%), Gaps = 34/232 (14%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAI- 61
V N + E E TC G TVT+ + P+ V
Sbjct: 51 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 110
Query: 62 ---DYGTILSSAFP---------SESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVC 109
T+ A P Q T + ++ C V
Sbjct: 111 SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFS----CSATLEV- 165
Query: 110 LFGARSGYLKETQNGGYLVP--VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG 167
+ + +T+ L + + S + C G P+P++ KDG
Sbjct: 166 --AGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 223
Query: 168 QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
G +T G Y C A ++ VT+ V
Sbjct: 224 TFPLPIGESVTVTRD-----------LEGTYLCRARSTQGEVTREVTVNVLS 264
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 76.9 bits (189), Expect = 9e-16
Identities = 33/250 (13%), Positives = 61/250 (24%), Gaps = 32/250 (12%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW---TVTLQALPSEKVADPNAI 61
+ + + ++L+ + G Y C + V A P +A +
Sbjct: 42 WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVV 101
Query: 62 DYG--TILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTH-----------------C 102
+L V+ Y+ C
Sbjct: 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQC 161
Query: 103 VPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
+ S LK + P + + V G I C +
Sbjct: 162 SALMGGRKVMSISIRLKVQKVIPG--PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDV 219
Query: 163 WYKDGQVIENDGVHYRITESNR-----LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + + L+++Q + +G Y CVASN ++ RV
Sbjct: 220 FLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Query: 218 E---GIFIHP 224
G H
Sbjct: 280 VESAGNSHHH 289
Score = 56.5 bits (136), Expect = 6e-09
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ ++ V G+ +++ C +G V W Y S+ L N A
Sbjct: 6 VIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP---HWTLYSDGSSSILSTNNA 58
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVE 218
++G YRC A+ + V+
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVK 86
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 74.4 bits (183), Expect = 9e-16
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---- 184
+K+ G + + C V+G P + W KDG V++N Y
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 185 LHINQANATDSGEYRCVASNSY-TSDENAVTIRVEG 219
L + +D+G Y C + T V + VEG
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 68.7 bits (168), Expect = 1e-13
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLH 186
+ + + + C+ G P P + W++ I +
Sbjct: 97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSV 149
Query: 187 INQANATDSGEYRCVASNSY-TSDENAVTIRVE 218
+N T S + C A N + T+ ++
Sbjct: 150 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 42.1 bits (99), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L++K VE G Y CQ +G +S V L
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94
Score = 39.0 bits (91), Expect = 0.001
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + ++C+A+N G A S T T+
Sbjct: 148 SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVH 180
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 77.4 bits (190), Expect = 1e-15
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPC-----DVDGYPIPQVFWYKDGQVIENDGVHY-RITES 182
+ Q+ + + + C ++ WYKD +++ D + + +
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT 179
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232
L ++ D+G YRCV + ++ + +T +E +P+
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229
Score = 70.1 bits (171), Expect = 3e-13
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 136 LETQVFGVGSDISIPC-------DVDGYPIPQVFWYKDGQVIE--NDGVHYRITESNRLH 186
+ + G +++ C P + W+K+ + + L
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ A DSG Y C N+ D+ ++ +RV
Sbjct: 85 LLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116
Score = 68.9 bits (168), Expect = 6e-13
Identities = 43/268 (16%), Positives = 77/268 (28%), Gaps = 59/268 (22%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS---EKVADPNA 60
L + E G Y C N +S + + ++ P
Sbjct: 72 EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQI 131
Query: 61 IDYGTILS------SAFPSESASPVVT--------------------QTTTTTTEATSPH 94
+ T S F + + T +
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED 191
Query: 95 --VY---AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISI 149
Y H N+ RS L+ + +PV ++ L+T +GS ++I
Sbjct: 192 AGYYRCVLTFAHEGQQYNI----TRSIELRIKKKKEETIPVIIS-PLKTISASLGSRLTI 246
Query: 150 PCDV---DGYPIPQVFWYK-DGQVIENDGVHYRITESNR--------------LHINQAN 191
PC V G P+ + W+ + IE+ R+TE R L +
Sbjct: 247 PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVT 306
Query: 192 ATDSG-EYRCVASNSYTSDENAVTIRVE 218
D +++CV N+ + T++
Sbjct: 307 REDLHMDFKCVVHNTLSFQTLRTTVKEH 334
Score = 37.4 bits (86), Expect = 0.010
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGA-YTCQAYNGLGRAVSWTVTLQ 48
+ N + L V E L + C +N L + T++
Sbjct: 286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ-TLRTTVK 332
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 79.0 bits (194), Expect = 1e-15
Identities = 30/251 (11%), Positives = 63/251 (25%), Gaps = 39/251 (15%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAI 61
Q + + I ++ + G Y + + +TV+++ + P
Sbjct: 92 QPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFR 151
Query: 62 DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKET 121
E+ +V + + + + + + L E
Sbjct: 152 ----------KMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL 201
Query: 122 QNGGY------------------LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVF 162
+ TL VG + I C +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Query: 163 WYKDGQVIENDGVHYRITESNR--------LHINQANATDSGEYRCVASNSYTSDENAVT 214
W + + +E T S ++ D+G Y C +S + VT
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL-VT 320
Query: 215 IRVEGIFIHPS 225
I +G +
Sbjct: 321 IVEKGFINATN 331
Score = 78.6 bits (193), Expect = 1e-15
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 2/88 (2%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
+ + E + YP + W + + + +
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE--QKGLDNGYSISKFC 384
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRV 217
+ GEY A N T+ +
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 75.1 bits (184), Expect = 2e-14
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQ 189
V + I++ VD W + + + I +
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK 109
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHPS 225
T +GEY + T+ T+ + +
Sbjct: 110 MTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
Score = 71.7 bits (175), Expect = 2e-13
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 39/246 (15%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTV----TLQALPSEKVA 56
M + + + V G YTC + ++ T+ + A S +
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDY 336
Query: 57 DPNAIDYGTI--LSSAFPSESASPVVT----QTTTTTTEATSPHVYAALTHCVPWSN--- 107
+ + + A+P T + + + + Y+ C
Sbjct: 337 EIDQYEEFCFSVRFKAYPQ----IRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGE 392
Query: 108 -VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD 166
+ A + + T+ +NI + QV S C DGYP+P W K
Sbjct: 393 YIFH--AENDDAQFTKM------FTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKC 444
Query: 167 GQVIENDGVHYRITESNR-------------LHINQANATDSGEYRCVASNSYTSDENAV 213
N NR +N + A +C A NS + +
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETI 504
Query: 214 TIRVEG 219
+ G
Sbjct: 505 LLNSPG 510
Score = 29.7 bits (66), Expect = 3.3
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI-FIHP 224
D + N N ++ S Y V+ + + +R + ++
Sbjct: 6 DLPVIKCVLINH-KNNDSSVGKSSSYPMVSESPE---DLGCALRPQSSGTVYE 54
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 74.8 bits (184), Expect = 2e-15
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 136 LETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
+ VG + C G+P P + W KDG +++ +L I +D
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-TIRGGKLMITYTRKSD 176
Query: 195 SGEYRCVASNSYTSDENAV 213
+G+Y CV +N E+ V
Sbjct: 177 AGKYVCVGTNMVGERESEV 195
Score = 70.6 bits (173), Expect = 4e-14
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV----HYRITESNRLHI-- 187
+ G ++ C +G P P + WYK G+ +E D H + S L
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 188 ---NQANATDSGEYRCVASNSY-TSDENAVTIRVEGI 220
+ + D G Y CVA N + + ++ V +
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
Score = 36.7 bits (85), Expect = 0.010
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 5 RSENYELNKNMLTIKRVEPERL-----GAYTCQAYNGLGRAVSWTVTLQ 48
RS L L R+ R G Y C A N LG AVS +L+
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
Score = 36.7 bits (85), Expect = 0.011
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+ + E + L I G Y C N +G S L
Sbjct: 152 PLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAEL 198
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 76.3 bits (187), Expect = 2e-15
Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ--------ALPSEKV------------ 55
L + + E G YTC + S + L+ A +
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140
Query: 56 ---ADPNAI-----DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSN 107
P A D G + +++ S VT T+ +S +T C
Sbjct: 141 STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT-CKVEHE 199
Query: 108 VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGV-GSDISIPCDVDGYPIP-QVFWYK 165
+ T N P +V+I+ + + ++ ++ CD P P W
Sbjct: 200 -----SFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST 254
Query: 166 DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + + + +L I + + C +N+ + + +T++V
Sbjct: 255 TMGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 60.5 bits (146), Expect = 3e-10
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHY-----RIT 180
L + ++ C G P Q+ W+ D + N +T
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
++ + ++ D C + +T+ +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT 212
Score = 50.1 bits (119), Expect = 8e-07
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 26/101 (25%)
Query: 143 VGSDISIPCDVDGYPIP-----QVFWYKDGQVIENDGVHYR----ITESNR--------- 184
+G +++PC + + Q+ W + G+ H +ES R
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 185 -------LHINQANATDSGEYRC-VASNSYTSDENAVTIRV 217
L + D G Y C + S + +RV
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 36.6 bits (84), Expect = 0.015
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L I+ V+ C N LG +T+Q
Sbjct: 260 PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGAR-QAELTVQ 301
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 73.7 bits (181), Expect = 2e-15
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV----HYRITES 182
+ ++ G D + C GYP P+ W K + + + I
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 183 NR---LHI-NQANATDSGEYRCVASNSYTSDENAVTIRV 217
L+I N D GEY C A+NS S + +RV
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 72.6 bits (178), Expect = 5e-15
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVHYRITESNRL 185
++ + E + +++ C++ + +W K+G + + +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR---KNASNMEY 58
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
IN+ A DSGEY CV + ++ + TI V+
Sbjct: 59 RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA 91
Score = 35.6 bits (82), Expect = 0.019
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
++ + + I + E G Y C + + T+ ++A P
Sbjct: 45 ELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPD 94
Score = 30.6 bits (69), Expect = 0.98
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 12 NKNMLTIKRVE-PERLGAYTCQAYNGLGRAVSWTVTL 47
N L I ++ E G Y C A N +G A S + L
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSIGSA-SVSTVL 186
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 76.3 bits (187), Expect = 2e-15
Identities = 39/264 (14%), Positives = 70/264 (26%), Gaps = 55/264 (20%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDY 63
++ +K L + E G Y C N + + + AI
Sbjct: 53 QASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFK 112
Query: 64 GTILSSA------------------------------FPSESASPVVTQTTTTTTEATSP 93
+ + ++ +
Sbjct: 113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 172
Query: 94 H--VY---AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDIS 148
H Y A+ T+ + R + PV V+ ET +GS I
Sbjct: 173 HRGNYTCHASYTYLGKQYPI----TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQ 228
Query: 149 IPCDVDGYPIPQVFWYKDGQVI--------------ENDGVHYRITESNRLHINQANATD 194
+ C+V G +W +G VI EN R T L+I++ +
Sbjct: 229 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288
Query: 195 -SGEYRCVASNSYTSDENAVTIRV 217
+ C A N++ D + +
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 71.7 bits (175), Expect = 8e-14
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 136 LETQVFGVGSDISIPC------DVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
+ Q V D + C + +P++ WYKD + + D +H+ +RL +
Sbjct: 110 IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-VKDRLIVMN 168
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232
G Y C AS +Y + +T +E I + + P+
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI 211
Score = 63.6 bits (154), Expect = 4e-11
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 149 IPCDVDGYP-IPQVFWYKDGQVIE-NDGVHYRITESNR-LHINQANATDSGEYRCVASNS 205
PC ++ + WYKD + RI + L A DSG Y CV NS
Sbjct: 25 RPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 84
Query: 206 YTSDENAVTIRV 217
++ +
Sbjct: 85 SYCLRIKISAKF 96
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 70.8 bits (174), Expect = 3e-15
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESN-- 183
PV + LE Q VG + + +V QV W K+G + + YR +
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 184 -RLHINQANATDSGEYRCVASNSYTS 208
L + D G Y+ + +
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCE 92
Score = 30.4 bits (69), Expect = 0.46
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
+++L V E G Y G A
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGGQCEA 93
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 71.5 bits (175), Expect = 3e-15
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIE-NDGVHYRITESNR-------LHI 187
+TQ G I C + P P ++ W V+E Y + + L I
Sbjct: 21 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI 80
Query: 188 NQANATD-SGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ D Y C A NS+ SD + ++ +G +
Sbjct: 81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119
Score = 35.3 bits (81), Expect = 0.011
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 16 LTIKRVEPERLGA-YTCQAYNGLGRAVSWTVTLQALPSEKVADPNA 60
LTI + Y C A+N G + + L+ SE +
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSEMSGPSSG 122
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 70.9 bits (174), Expect = 3e-15
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRC 200
G I + ++ +V W K+GQ I+ G Y L I+Q + D Y+C
Sbjct: 31 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
Query: 201 VASNSYTS 208
V S
Sbjct: 90 VVGGEKCS 97
Score = 27.7 bits (62), Expect = 3.2
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 2 IQVRSENYEL----NKNMLTIKRVEPERLGAYTCQA 33
IQ+ Y K LTI + AY C
Sbjct: 56 IQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 73.5 bits (180), Expect = 4e-15
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
LVP +G+ + C DG P + W+KDG + N
Sbjct: 102 LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 185 ---------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + A DSGEY C A N Y + + ++
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 64.2 bits (156), Expect = 6e-12
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG----------QVIENDGVHYRIT 180
V I + C G+ P+V W I
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
S+ + + D+GEY C+ S + V+I +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
Score = 37.6 bits (87), Expect = 0.006
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS-WTVTLQAL 50
+ + +T V + G YTC G+ ++ L L
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
Score = 36.5 bits (84), Expect = 0.013
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51
L V G Y CQA NG G A+ S + A+
Sbjct: 171 LIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 70.5 bits (173), Expect = 4e-15
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
V + L+T G S C + W G+ + + ++ T R
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQATRQGRKYI 66
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L + +A +D+GE +
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSK 90
Score = 31.2 bits (71), Expect = 0.24
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
Q + K +L ++ P G +A
Sbjct: 56 FQATRQG---RKYILVVREAAPSDAGEVVFSVRGLTSKA 91
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 70.8 bits (173), Expect = 5e-15
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPI---PQVFWYKDG--QVIENDGVHYRITES------- 182
+ VG DI+ V + P + W+K + G H ++ E+
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 183 --NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ I +A +G YRC + D + + V
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
Score = 32.3 bits (73), Expect = 0.16
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ I + + G Y C+ S + L+
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLE 108
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 75.6 bits (185), Expect = 5e-15
Identities = 32/252 (12%), Positives = 47/252 (18%), Gaps = 36/252 (14%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGA-YTCQAYNGLGRAVSWTVTLQALPSEKVADPN-- 59
R N + L I Y C G V V
Sbjct: 78 TRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137
Query: 60 ---AIDYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNV-------- 108
YG L +T Y+ + N
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRY 197
Query: 109 -CLFGARSGYLKETQNGGYLVPVKVN---------ITLETQVFGVGSDISIPCDVDGYPI 158
C +K + V I +G +I C +
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSL 257
Query: 159 PQ----VFWYKDGQVIENDGVHYRITESNR-------LHINQANATDSGE-YRCVASNSY 206
+ W I ++ L+ G Y C N Y
Sbjct: 258 LVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYY 317
Query: 207 TSDENAVTIRVE 218
T+ +E
Sbjct: 318 FDKTLTTTVVLE 329
Score = 46.7 bits (110), Expect = 1e-05
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 14/85 (16%)
Query: 144 GSDISIPCDVDGYPI---------PQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
G S C + V W K G+ ++ L I + D
Sbjct: 44 GEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKNGDLWIANYTSND 100
Query: 195 SGE-YRCVASNS-YTSDENAVTIRV 217
S Y C + + V +
Sbjct: 101 SHRRYLCTVTTKNGDCVQGIVRSHI 125
Score = 40.6 bits (94), Expect = 8e-04
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
+ + Y + L I E E G Y C + + + + V
Sbjct: 170 LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDH 228
Query: 62 DYGTILSS 69
+ IL
Sbjct: 229 RFKLILDP 236
Score = 35.2 bits (80), Expect = 0.045
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGA-YTCQAYNGLGRAVSWTVTLQ 48
+ + + + + + L + V E +G YTC+ +N + T T+
Sbjct: 280 VYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVV 327
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 76.2 bits (188), Expect = 6e-15
Identities = 50/221 (22%), Positives = 83/221 (37%), Gaps = 44/221 (19%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
D +VE++ L + ++ K+A D + + + E+ P + GSS MP K N
Sbjct: 232 GERDRIVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRN 288
Query: 422 PTQCEALTMVAAQVMGNHVAVT----------IGGSNGHFELNVFKPLIVSNVLRSIRLI 471
P ++ A +V ++ +G H E L I +
Sbjct: 289 PVAAASVLAAANRVPALMSSIYQSMVQEHERSLGAW--HAEW---------LSLPEIFQL 337
Query: 472 ADSATAFTDKCVSGIVANEENIHR-------LLH-ESLMLVTALNPHIG----YDKAAKI 519
A T + G+ N EN+H+ L+ E++M+ AL PH+G +
Sbjct: 338 TAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAA 395
Query: 520 AKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
KTA E LK + Y + ++ PE LG
Sbjct: 396 CKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLG 436
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 70.1 bits (172), Expect = 7e-15
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----R 184
V + LE GS + C + V W+ D + + I
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE-LNEIDAQPGGYHV 71
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L + Q DSG A + S
Sbjct: 72 LTLRQLALKDSGTIYFEAGDQRAS 95
Score = 28.5 bits (64), Expect = 2.6
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
LT++++ + G +A + A + + PS
Sbjct: 72 LTLRQLALKDSGTIYFEAGDQRASA---ALRVTEKPSVFSRSG 111
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 75.8 bits (187), Expect = 7e-15
Identities = 54/243 (22%), Positives = 78/243 (32%), Gaps = 48/243 (19%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A +AE L P D LVE + L VA SL K DI L +
Sbjct: 210 AEALAEQLKLTLPEQPWH----TQRDRLVEFASVLGLVAGSLGKFGRDISLLM---QTEA 262
Query: 402 GELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVT----------IGGSNG 449
GE+ P + GSS MP K NP L A +V G + +G
Sbjct: 263 GEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLW-- 320
Query: 450 HFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLH--------ESL 501
H E L I + A G+ + + R L E++
Sbjct: 321 HAEW---------ETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAV 371
Query: 502 MLVTALNPHIG----YDKAAKIAKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPED 553
+ L +G + + + A E L+ L+ EE ++ + P
Sbjct: 372 SI--VLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAH 429
Query: 554 MLG 556
LG
Sbjct: 430 YLG 432
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 74.4 bits (182), Expect = 8e-15
Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 32/241 (13%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGT 65
+E E KN ++ E R G YTC NGL ++ V A +
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 66 IL-------------------SSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWS 106
L + P++ + T + + C
Sbjct: 109 ALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR-CAAQR 167
Query: 107 NVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYK 165
+ S V++ + + G ++ C + W K
Sbjct: 168 DG--TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225
Query: 166 DGQVIENDGVH---------YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216
++ + L I+ A DSG + C A+N++ S T++
Sbjct: 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Query: 217 V 217
V
Sbjct: 286 V 286
Score = 62.8 bits (152), Expect = 5e-11
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 2/99 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P K+ + SD + C + + Q + + + + I
Sbjct: 90 DPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITI 149
Query: 188 -NQANATDSGEYRCVASNSYTSDE-NAVTIRVEGIFIHP 224
N A RC A T + T++V
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI 188
Score = 51.7 bits (123), Expect = 2e-07
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
G P ++ + G +S+ C V W E + N
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE-----MVENKKNE 58
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHPS 225
+A AT +G Y C SN TS ++ + V +F+
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGL 99
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 69.4 bits (170), Expect = 9e-15
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
+V K G+ ++ C+V +V WYKDG+ + + R+
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSS-KVRVEAVGCTR 66
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
RL + QA ++GEY C A S ++V G
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGGQQLS----FRLQVAG 98
Score = 28.9 bits (65), Expect = 1.5
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 6 SENYELNKN----MLTIKRVEPERLGAYTCQAYNGLGRA 40
S + L +++ G Y+C+A
Sbjct: 54 SSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSF 92
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 69.3 bits (170), Expect = 1e-14
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
L C +P V W K + G ++ ++ RL
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASG-KHQPSQEGLTLRL 65
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
I+ DS Y C + + + V+G PS
Sbjct: 66 TISALEKADSDTYTCDIGQAQSR----AQLLVQGRRSGPS 101
Score = 30.4 bits (69), Expect = 0.45
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 6 SENYELNKN----MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
S ++ ++ LTI +E YTC RA + +Q S
Sbjct: 51 SGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRA---QLLVQGRRS 98
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 69.3 bits (169), Expect = 1e-14
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 136 LETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQ--VIENDGVHYRITES-------- 182
+ VG I+ V G + P V W+K + G H ++ +S
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 183 -NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
LHI A +G YRC S D + + V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 32.7 bits (74), Expect = 0.073
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L I +P G+Y C+ L
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLT 105
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 69.1 bits (169), Expect = 1e-14
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 137 ETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
+Q G+D++ C P + W + + L I +D+
Sbjct: 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF---NGILTIRNVQPSDA 74
Query: 196 GEYRCVASNSYTSDENAVTIRVE 218
G Y C SN + D+ T+ V+
Sbjct: 75 GTYVCTGSNMFAMDQGTATLHVQ 97
Score = 35.9 bits (83), Expect = 0.005
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
LTI+ V+P G Y C N T TL
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMD-QGTATLH 95
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 72.2 bits (177), Expect = 1e-14
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 134 ITLETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVH-------YRITESNRL 185
+ + G + C G P P + W KDG +++ RI + L
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNL 172
Query: 186 HINQANATDSGEYRCVASNSY---TSDENAVTIRVEGIFIHPS 225
I+ D G Y+C+A N S + ++V+ H
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 68.4 bits (167), Expect = 3e-13
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESN-----RLHI 187
V ++ C V+G P P + W+KDG+ V N+ +R+ + +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 188 NQANATDSGEYRCVASNSY-TSDENAVTIRV 217
D GEY CVA N + ++++
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 36.4 bits (84), Expect = 0.015
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
T++ + + G Y C A N +G+AVS +LQ
Sbjct: 71 RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQ 103
Score = 36.0 bits (83), Expect = 0.018
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L I VEP G Y C A N +G S L
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVGTRESSYAKL 203
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 68.5 bits (168), Expect = 2e-14
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
PV+ L+ G ++ C + P V W V+ Y + + +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQEGAMLEL 65
Query: 187 -INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ DSG Y C + TS T+ V + PS
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQTTS----ATLTVTALPSGPS 101
Score = 31.5 bits (72), Expect = 0.15
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 6 SENYELNKN----MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
+ Y L + L ++ + P+ G Y+C + A T+T+ ALPS
Sbjct: 51 GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSA---TLTVTALPSG 99
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 68.1 bits (167), Expect = 2e-14
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
++V L VG ++ P W GQ + I E + H
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHIL 62
Query: 187 -INQANATDSGEYRCVASNSYTS 208
++ +GE A+N+ ++
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSA 85
Score = 29.6 bits (67), Expect = 0.60
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 6 SENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
S + E+ K++L + + G + QA N A
Sbjct: 48 SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAA 86
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 74.2 bits (183), Expect = 2e-14
Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 44/218 (20%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
DA+ E L V+ SL K+A DI + LGE++ P + SS MP K NP
Sbjct: 229 DAVAETVQFLALVSGSLGKLAMDISIMM---TTELGEVAEPFVRHRGASSTMPQKQNPVS 285
Query: 425 CEALTMVAAQVMGNHVAVT----------IGGSNGHFELNVFKPLIVSNVLRSIRLIADS 474
CE + A V + ++ G H E + + +A
Sbjct: 286 CELILAGARIVRNHATSMLDAMIHDFERATGPW--HLE---------WSAVPEGFAVASG 334
Query: 475 ATAFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIG----YDKAAKIAKT 522
+ + G+ + + L E++M+ AL PH G +D +
Sbjct: 335 ILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMM--ALAPHTGRKEAHDIVYLGCRR 392
Query: 523 AHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
A ++ T L L EE P + LG
Sbjct: 393 AVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLG 430
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 70.4 bits (172), Expect = 3e-14
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 120 ETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI 179
E Q + + + L G +++ + P V I
Sbjct: 93 EVQLLVFGLTANSDTHLL-----QGQSLTLTLESPPGSSPSVQCRSPRGKN--------I 139
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L ++Q DSG + C + E + I V
Sbjct: 140 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
Score = 53.4 bits (128), Expect = 2e-08
Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 23/102 (22%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-------------------SN 183
G + + C Q W Q+ +T+ +
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I DS Y C + V + V G+ +
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEE----VQLLVFGLTANSD 106
Score = 37.3 bits (86), Expect = 0.005
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVA 56
L++ ++E + G +TC V + + + L +K +
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 184
Score = 36.1 bits (83), Expect = 0.014
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKV 55
R ++ L IK ++ E Y C+ + L A +
Sbjct: 56 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 109
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 70.5 bits (172), Expect = 5e-14
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P ++ +G+D + C+ +G Q W K S + +
Sbjct: 122 PSGTRCFVDGSEE-IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
A++ SG Y C N SD+ + + V + PS
Sbjct: 181 KNASSEYSGTYSCTVQNRVGSDQCMLRLDV----VPPS 214
Score = 46.2 bits (109), Expect = 8e-06
Identities = 12/127 (9%), Positives = 28/127 (22%), Gaps = 30/127 (23%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQ----VFWYKDGQVIENDGVHYRITESNR- 184
+ + + G +PC P Q + W + + ++
Sbjct: 1 LSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKI 60
Query: 185 -------------------------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+++ +D G Y+C + + V
Sbjct: 61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV 120
Query: 220 IFIHPSC 226
C
Sbjct: 121 KPSGTRC 127
Score = 36.2 bits (83), Expect = 0.018
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
+++K E G Y+C N +G + L +P
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVVP 212
Score = 30.0 bits (67), Expect = 1.6
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
+ S + + + + ++ +G Y C+ G A + +T+ PS
Sbjct: 72 VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 73.7 bits (181), Expect = 6e-14
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHI 187
+ + G G + C V P V W+KD + ++ V Y + L I
Sbjct: 484 RFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRYNGNDYGLTI 542
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
N+ D GEY A NSY + E V + V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 37.5 bits (87), Expect = 0.010
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
Y N LTI RV+ + G YT +A N G V L
Sbjct: 533 YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK-EEIVFL 570
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 67.5 bits (165), Expect = 6e-14
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHI-----NQ 189
+ G ++ C +G P P + WYK G+ +E D H + S L +
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 190 ANATDSGEYRCVASNSY-TSDENAVTIRVEG 219
+ D G Y CVA N + + ++ V
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 38.3 bits (89), Expect = 0.001
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 5 RSENYELNKNMLTIKRVEPERL-----GAYTCQAYNGLGRAVSWTVTLQ 48
RS L L R+ R G Y C A N LG AVS +L+
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 67.0 bits (164), Expect = 6e-14
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 129 PVKVNITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
PV + + + + C++ WYKDGQ +E +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESE-LLVVKMDGRKH 65
Query: 184 RLHINQANATDSGEYRCVASNSYTS 208
RL + +A DSGE+ C
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVSAF 90
Score = 28.5 bits (64), Expect = 1.7
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40
+ V+ + K+ L + + + G + C+
Sbjct: 56 LVVKMDG---RKHRLILPEAKVQDSGEFECRTEGVSAFF 91
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 72.2 bits (176), Expect = 6e-14
Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 49/257 (19%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILS- 68
K++L + G YTC N + V++ + + S + + +
Sbjct: 76 KEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEY 135
Query: 69 ----------SAFPSESASPVVT---------QTTTTTTEATSPHVYAALTH------CV 103
+ S P +T E + AL CV
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCV 195
Query: 104 ---PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGV--GSDISIPCDV----D 154
P + R+ +K + VP ++ + V+ G ++ IPC V
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFL 255
Query: 155 GYPIPQVFWYKDGQVIENDGVHYRITESNR------------LHINQANATD-SGEYRCV 201
+V+W DG+ ++ + I ES L I + + D Y C
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315
Query: 202 ASNSYTSDENAVTIRVE 218
A ++ A ++ +
Sbjct: 316 ARSAKGEVAKAAKVKQK 332
Score = 66.4 bits (161), Expect = 5e-12
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 9/140 (6%)
Query: 137 ETQVFGVGSDISIPCD-----VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN 191
+++ I C P + WY I+N + I E L A
Sbjct: 128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIAL 185
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQ 251
+++G Y CV + +T + + +P + +
Sbjct: 186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL 245
Query: 252 FCCESCTRAGQLPSYGPHIK 271
C +
Sbjct: 246 IPCTVYFSFLMDSR--NEVW 263
Score = 61.4 bits (148), Expect = 2e-10
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQ------VIENDGVHYRIT-ESNRLHINQANATDS 195
+ + WY Q I RI+ E + L D+
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y C+ N+ + A + V
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEV 113
Score = 34.5 bits (78), Expect = 0.090
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 15 MLTIKRVEPERLGA-YTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
+L+IK+V E L Y C A + G + ++ +KV P
Sbjct: 297 ILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVK----QKVPAP 336
Score = 34.1 bits (77), Expect = 0.100
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQA---YNGLGRAVSWTVTLQALPSEKVADP 58
N L+ G YTC NG ++ T+T++ + S K A P
Sbjct: 168 NFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP 224
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 66.6 bits (163), Expect = 6e-14
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANAT 193
QV G + ++ P +V WYK+GQ I Y L IN T
Sbjct: 17 AYQVD-KGGRVRFVVEL-ADPKLEVKWYKNGQEIRPST-KYIFEHKGCQRILFINNCQMT 73
Query: 194 DSGEYRCVASNSYTS 208
D EY A + S
Sbjct: 74 DDSEYYVTAGDEKCS 88
Score = 29.7 bits (67), Expect = 0.69
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 6 SENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
S Y + +L I + Y A + + +++ PS
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCST---ELFVRSGPS 98
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 67.0 bits (164), Expect = 7e-14
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
P + L+T+ G+ ++ C++ + V W K + + + G Y + + L
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGG-RYSLKQDGTRCEL 64
Query: 186 HINQANATDSGEYRCVASNSYTS 208
I+ + D+GEY C+ TS
Sbjct: 65 QIHDLSVADAGEYSCMCGQERTS 87
Score = 31.6 bits (72), Expect = 0.18
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 6 SENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
Y L + L I + G Y+C A T+T++ALP+
Sbjct: 50 GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSA---TLTVRALPAR 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 72.2 bits (177), Expect = 7e-14
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDSGEYRCV 201
+G ++I CD + +V+ + + + G + ++ N L + D G Y C
Sbjct: 260 LGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCY 319
Query: 202 ASNSYTSDENAVTIRVEGIFIHPS 225
A ++ +V ++V +H
Sbjct: 320 AMGETFNETLSVELKVYNFTLHGH 343
Score = 30.2 bits (68), Expect = 1.8
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW-TVTLQALPSEKVADPN 59
+ + + L K+V+ E G YTC A + + D
Sbjct: 293 NGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTL 347
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 66.6 bits (163), Expect = 7e-14
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESN---R 184
+ V LE G + + C+V V W+K+G+ I YRI
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L I A D+ EY + + +S
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQSS 89
Score = 32.3 bits (74), Expect = 0.086
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
++R E K++L I+ Y+ G A +V L++ PS
Sbjct: 55 YRIRVEG---KKHILIIEGATKADAAEYSVMTTGGQSSAKL-SVDLKSGPS 101
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 66.6 bits (163), Expect = 8e-14
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
+ + GS + + +V W + G I Y + L
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASN-KYGLATEGTRHTL 65
Query: 186 HINQANATDSGEYRCVASNSYTS 208
+ + D G Y +A +S
Sbjct: 66 TVREVGPADQGSYAVIAGSSKVK 88
Score = 29.6 bits (67), Expect = 0.66
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 6 SENYEL----NKNMLTIKRVEPERLGAYTCQA 33
S Y L ++ LT++ V P G+Y A
Sbjct: 51 SNKYGLATEGTRHTLTVREVGPADQGSYAVIA 82
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 68.3 bits (167), Expect = 1e-13
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 120 ETQNGGYLVPVKVNITLE-------TQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+T PV + + E F G I + C P+ +V ++++G+ +
Sbjct: 69 QTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
I QAN + SG+Y C + YT VTI V
Sbjct: 129 FSH------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 65.2 bits (159), Expect = 1e-12
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 129 PVKVNITLE---TQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNR 184
P K + LE V +++ C P + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPPWINVL-QEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQP 52
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ +AN DSGEY C + SD V + V
Sbjct: 53 SYRFKANNNDSGEYTCQTGQTSLSD--PVHLTV 83
Score = 38.3 bits (89), Expect = 0.002
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+I + G Y C G S VT+
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT 168
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 70.9 bits (173), Expect = 1e-13
Identities = 30/229 (13%), Positives = 57/229 (24%), Gaps = 29/229 (12%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL----------QALPSEKVADPNAIDYGT 65
+ + R+E E G Y C+ + L + + A D
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 153
Query: 66 ILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGAR---SGYLK-ET 121
+ + + VV+ T EA + S L +R L
Sbjct: 154 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213
Query: 122 QNGGYLVPVKVNIT-----------LETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQV 169
+ + + + D+ + C D P + W
Sbjct: 214 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273
Query: 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ N + +G Y C A+N + V + +
Sbjct: 274 LPK---GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 49.0 bits (116), Expect = 2e-06
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 26/122 (21%)
Query: 121 TQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYP----IPQVFWYKDGQVI------ 170
Q G V + F +G+D+ + C I QV W K
Sbjct: 7 GQQMGRDPSQVVQVNDSMYGF-IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAI 65
Query: 171 --ENDGVHYRITESNR------------LHINQANATDSGEYRC-VASNSYTSDENAVTI 215
+ GV R + +++ D G Y C A+ + E+ + +
Sbjct: 66 YNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
Query: 216 RV 217
V
Sbjct: 126 TV 127
Score = 34.0 bits (77), Expect = 0.11
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPN 59
N+ + + G Y C+A N +G V + + + +
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
Score = 31.6 bits (71), Expect = 0.66
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDY 63
+ + + C + R S T+ +Q P + + Y
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWY 244
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 65.8 bits (161), Expect = 2e-13
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+P+K L + G+ + C++ V W+K + + + + + +
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGD-RHSLRQDGARCE 74
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L I A D+GEY C+ TS
Sbjct: 75 LQIRGLVAEDAGEYLCMCGKERTS 98
Score = 29.3 bits (66), Expect = 1.2
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 6 SENYELNKN----MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
+ + L ++ L I+ + E G Y C A +T++A+PS
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSA---MLTVRAMPSG 109
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 68.4 bits (167), Expect = 2e-13
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 120 ETQNGGYLVPVKVNIT-------LETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+TQ PV++ + VF I + C + +V + ++G+ +
Sbjct: 72 QTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS-DENAVTIRVEGIFIHPSCRDLP 230
++ +I +A DSG Y C + V I + +
Sbjct: 132 YFH------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFF 185
Score = 60.3 bits (146), Expect = 1e-10
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 129 PVKVNITLE---TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNR 184
K + LE +V +++ C P Q W+ + +I ++++
Sbjct: 5 LPKAVVFLEPQWYRVL-EKDSVTLKCQGAYSPEDQSTQWFHNESLIS--------SQASS 55
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
I+ A DSGEYRC S SD V + V
Sbjct: 56 YFIDAATVDDSGEYRCQTQLSTLSD--PVQLEV 86
Score = 34.9 bits (80), Expect = 0.038
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
I + + G+Y C+ G S TV +
Sbjct: 139 FYIPKATLKDSGSYFCRGLVGSKNVSSETVQIT 171
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 67.2 bits (164), Expect = 2e-13
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 120 ETQNGGYLVPVKVN-------ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+ Q PV + + +V G + + C + + +V +YKDG+ ++
Sbjct: 69 QHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
E++ + I A DSG Y C E + I V
Sbjct: 129 YWY------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 66.8 bits (163), Expect = 4e-13
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 128 VPVKVNITLE---TQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESN 183
VP K ++L ++F G ++++ C+ + + + W+ +G + E ++
Sbjct: 1 VPQKPKVSLNPPWNRIF-KGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ETNS 51
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L+I A DSGEY+C S+ + + + + + S
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS 93
Score = 37.6 bits (87), Expect = 0.003
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPSEK 54
++I E G Y C S + + P EK
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 67.6 bits (165), Expect = 3e-13
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
++ + ++ C+V P++ Y+DG+ + S R+ ++ + S ++
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHL---------KLSQRVITHKWTTSLSAKF 160
Query: 199 RCVASNSYTSDENAVTIRVEG 219
+C A N + + + +
Sbjct: 161 KCTAGNKVSKESSVEPVSCPE 181
Score = 54.9 bits (132), Expect = 6e-09
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 139 QVFG-VGSDI--SIPCDVDGYPIPQVFWYKDGQVIE-----------NDGVHYRITESNR 184
+ +G +G DI IP I + W K + + Y++ ++
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I D Y+ ++ + ++ I S
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK-IQERVS 107
Score = 33.3 bits (76), Expect = 0.096
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 6 SENYELNKN-MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPN 59
+ Y+L KN L IK ++ + Y Y+ G+ V L+ E+V+ P
Sbjct: 57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ--ERVSKPK 110
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 65.1 bits (159), Expect = 3e-13
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
++V + C+V WYK+G + I+ R H
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSK-RITISHVGRFHKL 65
Query: 187 -INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
I+ D G+Y V S + E PS
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYALSLSAKLNFL-EIKVSGPS 104
Score = 33.1 bits (76), Expect = 0.042
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVA 56
I + + L I V PE G YT + L L +
Sbjct: 54 ITISHVG---RFHKLVIDDVRPEDEGDYTFVPDGYALSL---SAKLNFLEIKVSG 102
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 70.7 bits (172), Expect = 4e-13
Identities = 39/229 (17%), Positives = 64/229 (27%), Gaps = 28/229 (12%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNA-I 61
V N + E E TC G TVT+ + P+ V +
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295
Query: 62 DYG---TILSSAFPSESAS------PVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFG 112
G T+ A P + + +AT + + C V
Sbjct: 296 SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFS-CSATLEV---A 351
Query: 113 ARSGYLKETQNGGYLVP--VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI 170
+ + +T+ L + + S + C G P+P++ KDG
Sbjct: 352 GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 411
Query: 171 ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
G +T G Y C A ++ VT+ V
Sbjct: 412 LPIGESVTVTRD-----------LEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 54.5 bits (130), Expect = 5e-08
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDG-YPIPQ--VFWYKDGQVIENDGVHYRITESNRL 185
P +V + VG ++++ C V+G P V + + ++ + E
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVT-T 144
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + C +
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
Score = 48.3 bits (114), Expect = 4e-06
Identities = 19/217 (8%), Positives = 47/217 (21%), Gaps = 38/217 (17%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLG-RAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSE 74
T+ ++C+ L + + A + A + +
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD 203
Query: 75 SASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGAR-----SGYLKETQNGGY--- 126
+ V + + V+ AL V S + G
Sbjct: 204 TQGT-VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 127 ------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
N+ L G+++++ C+ +
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ +L + + + C A+
Sbjct: 323 LG----------PRAQLLLKATPEDNGRSFSCSATLE 349
Score = 43.7 bits (102), Expect = 1e-04
Identities = 7/87 (8%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ +++ + G + + C + + +NR +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELS 55
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
N + + C ++ + V
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFLTV 82
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 69.8 bits (170), Expect = 5e-13
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL 185
L+ + +T + G +++ + P V I L
Sbjct: 94 QLLVFGLTANSDTHLL-QGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQGGKTL 144
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
++Q DSG + C + E + I V S
Sbjct: 145 SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASS 184
Score = 61.0 bits (147), Expect = 3e-10
Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 37/221 (16%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
L++ ++E + G +TC + V + + + L +K + G + +F
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKASSIVYKKEGEQVEFSF 198
Query: 72 PSESASPVVTQTTTTTTEAT-SPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPV 130
P +T + +A + + +T + V + + L
Sbjct: 199 PLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT 258
Query: 131 KVNITLETQVFGV------------------------GSDISIPCDVDGYPIPQVF--WY 164
+ G ++ C+V G P++
Sbjct: 259 LPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLK 318
Query: 165 KDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ + S R ++G ++C+ S+S
Sbjct: 319 LENK---------EAKVSKREKAVWVLNPEAGMWQCLLSDS 350
Score = 52.9 bits (126), Expect = 1e-07
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 23/102 (22%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-------------------SN 183
G + + C Q W Q+ +T+ +
Sbjct: 8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I DS Y C + + V + V G+ +
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSD 105
Score = 51.0 bits (121), Expect = 6e-07
Identities = 18/250 (7%), Positives = 48/250 (19%), Gaps = 31/250 (12%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKV------ 55
R ++ L IK ++ E Y C+ + L A +
Sbjct: 55 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSL 114
Query: 56 -----ADPNAIDYGTILSSAFPSESASPVVTQTTTTTT-------EATSPHVYAALTHCV 103
+ P + S + ++ +
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK--- 171
Query: 104 PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV-- 161
++ + + + G V + + ++ + +
Sbjct: 172 --IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITF 229
Query: 162 FWYKDGQVIENDGVHYRITESNR------LHINQANATDSGEYRCVASNSYTSDENAVTI 215
++ ++ + L SG V +
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Query: 216 RVEGIFIHPS 225
V
Sbjct: 290 VVMRATQLQK 299
Score = 30.1 bits (67), Expect = 1.9
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
V G + C + V ++ LP
Sbjct: 330 EKAVWVLNPEAGMWQCLLSDSGQ--VLLESNIKVLP 363
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 67.0 bits (163), Expect = 6e-13
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFW-YKDGQVIENDGVHYRIT--ESN 183
+ P+ +++ E F S +++ C V+ +P P V W +G + + +
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 184 RLHINQANA---TDSGEYRCVASNS 205
L + + CV N
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKND 186
Score = 50.8 bits (121), Expect = 2e-07
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 143 VGSDISIPC---DVDGYPIPQVFWYKDG---QVIENDGVH----------------YRIT 180
+G +++ V P +V W+K G + + +H +R
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ L + AN + G Y C T + V
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101
Score = 34.6 bits (79), Expect = 0.046
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
N L + G Y C+ G V+ L +
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVK 103
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 63.1 bits (154), Expect = 1e-12
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
+K+ L Q +G +I + C++ + W K+G ++ ++ + R+H
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD-RLKVVQKGRIHKL 63
Query: 187 -INQANATDSGEYRCVASNSYTS 208
I A D G+Y +
Sbjct: 64 VIANALTEDEGDYVFAPDAYNVT 86
Score = 35.4 bits (82), Expect = 0.007
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
++V + + L I E G Y V + + PS
Sbjct: 52 LKVVQKG---RIHKLVIANALTEDEGDYVFAPDAYNVTL-PAKVHVISGPS 98
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 65.3 bits (159), Expect = 1e-12
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 120 ETQNGGYLVPVKVN-------ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+T PV++ + VF I + C + +V + ++G+ +
Sbjct: 72 QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
++ HI +A DSG Y C + V I +
Sbjct: 132 YFH------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 60.7 bits (147), Expect = 5e-11
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 129 PVKVNITLE---TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNR 184
K + LE V +++ C P W+ + +I ++++
Sbjct: 5 LPKAVVFLEPQWYSVL-EKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASS 55
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
I+ A DSGEYRC + S SD + + + + +
Sbjct: 56 YFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP 96
Score = 35.6 bits (82), Expect = 0.016
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
I + + G+Y C+ G S TV +
Sbjct: 139 FHIPKATLKDSGSYFCRGLVGSKNVSSETVNIT 171
Score = 27.5 bits (61), Expect = 7.4
Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 3/37 (8%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ I G Y CQ S V L+
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLE 85
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 63.2 bits (154), Expect = 2e-12
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 128 VPVKVNIT--LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-- 183
V + + + C++ P +V W KDG+ + + + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESP-ALLLQKEDTV 67
Query: 184 -RLHINQANATDSGEYRCVASNSYTS 208
RL + DSGEY C + S
Sbjct: 68 RRLVLPAVQLEDSGEYLCEIDDESAS 93
Score = 30.5 bits (69), Expect = 0.49
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 6 SENYELNKN----MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKV 55
S L K L + V+ E G Y C+ + TVT+ P +
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASF---TVTVTEPPVRII 106
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 65.3 bits (159), Expect = 2e-12
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLH 186
E + + ++ C G P P + W +D + H LH
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP---QRSLH 161
Query: 187 INQANATDSGEYRCVASNSY-TSDENAVTIRVE 218
+ + + C A N+ + TI V
Sbjct: 162 V--PGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 61.1 bits (148), Expect = 6e-11
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 134 ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIEN-----------DGVHYRITE 181
G ++ C + P+V W +DGQ++E +
Sbjct: 7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIV 66
Query: 182 SNRLHINQANATDSGEYRCVASNSY-TSDENAVTIRVEG 219
++L I +D+G+Y+C+ + T + +EG
Sbjct: 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Score = 39.5 bits (92), Expect = 0.001
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L I ++ G Y C + G VS +
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVG 102
Score = 37.6 bits (87), Expect = 0.005
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
+ + + L + + +++C+A+N G S T T+ LP
Sbjct: 147 PLATAPGHGPQRSLHVPGLNKT--SSFSCEAHNAKGVTTSRTATITVLP 193
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 64.3 bits (156), Expect = 3e-12
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDG-----QVIENDGVHYRI 179
P +V ++ G + C + P + WYK ++ + +
Sbjct: 80 LHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139
Query: 180 TES---NRLHINQAN-ATDSGEYRCVASNSYTSDENAVTIRV 217
+ S + LHI N D G+YRC ++S SD+ +T+RV
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 64.3 bits (156), Expect = 4e-12
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANA 192
T+ T V +GS I + C ++ W K G V++ D + +
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-----LPGQKTEFKVDSD 58
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
GEY CV I++ G
Sbjct: 59 DQWGEYSCVFLPEPMGT---ANIQLHG 82
Score = 34.6 bits (79), Expect = 0.046
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 12 NKNMLTIKRVEPER-LGAYTCQAYNGLGRAVSWTVTLQ 48
++ L I+ + E G Y C + G +TL+
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLR 180
Score = 29.2 bits (65), Expect = 2.5
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 7 ENYELNKNMLTIKRVEPERLGAYTCQAYN 35
+ L K ++ G Y+C
Sbjct: 42 KEDALPGQKTEFKVDSDDQWGEYSCVFLP 70
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 62.8 bits (152), Expect = 5e-12
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 31/112 (27%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG---------------------- 174
+T V G+ + + + G P P V W K
Sbjct: 26 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKK 85
Query: 175 ----VHYRIT-----ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
R+ + + + A D G Y N D+ +T++V
Sbjct: 86 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 34.0 bits (77), Expect = 0.047
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
VR E + ++++ T++ E E G YT N +G +T++
Sbjct: 94 VRVETTK-DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV-NLTVK 136
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 61.7 bits (149), Expect = 7e-12
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 143 VGSDISIPCDVDGYPI---PQVFWYKD--GQVIENDGVHYRITESN---------RLHIN 188
G D + V+G + P + W+K ++ G + ES+ LHI
Sbjct: 26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ D G YR T D I VE
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 63.5 bits (154), Expect = 9e-12
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYR---------ITE 181
V E VGS +S+ CD D ++ + Q +END +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 182 SNR-LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVE 240
HI DSG+YRC+ D +T++V+ ++ R L + ++ +
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLT 124
Query: 241 GRYCQHHYY 249
CQ Y
Sbjct: 125 ---CQARGY 130
Score = 53.5 bits (128), Expect = 2e-08
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 108 VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG 167
CL + + + + I ++ + C GYP+ +V W
Sbjct: 83 RCLVICGAAW-DYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVS 141
Query: 168 Q-----VIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221
I Y++T RL S + C+ N++ + + I
Sbjct: 142 VPANTSHIRTPEGLYQVTSVLRL-----KPQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195
Score = 28.1 bits (62), Expect = 5.6
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN 59
+ E L K + I V+ G Y C G +T++ S D
Sbjct: 55 ATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDTR 111
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 64.8 bits (157), Expect = 2e-11
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 128 VPVKVNITLETQVFGVGS--DISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
V V V+ Q+ IP VDG P P + W +G V+ +
Sbjct: 243 VQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAA 302
Query: 185 --------LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L +NQ ++G Y +A+N + ++
Sbjct: 303 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 64.0 bits (155), Expect = 3e-11
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI-NQ 189
+ + + VG D+ + C V+G + Q W + S L + N
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANV 219
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + C A N E +V + V
Sbjct: 220 TSDLNRKNVTCWAENDVGRAEVSVQVNV 247
Score = 35.1 bits (80), Expect = 0.050
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALP 51
L + + G YT A N G+A S P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 28.2 bits (62), Expect = 7.1
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 6 SENYELNKNMLTIKRVEPER-LGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYG 64
++ L LT+ V + TC A N +GRA +V + V A++
Sbjct: 204 MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASVQLHTAVEMH 262
Query: 65 TILSSAFPSESASPVVT 81
+P +
Sbjct: 263 HWCIPFSVDGQPAPSLR 279
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 61.8 bits (149), Expect = 3e-11
Identities = 27/209 (12%), Positives = 52/209 (24%), Gaps = 56/209 (26%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
+K + + G Y C+ + + + SA
Sbjct: 47 DKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ--------------------VYYRMGSAD 86
Query: 72 PSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVK 131
++ + + + P K
Sbjct: 87 DAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ-----------------------TPYK 123
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHI-NQ 189
V+I+ G+ + + C YP ++ W + + I D I L +
Sbjct: 124 VSIS--------GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 173
Query: 190 ANATDSGEYRCVASNSYTSDENA-VTIRV 217
+ SG Y C S D N + +R
Sbjct: 174 SELEQSGYYVCYPRGSKPEDANFYLYLRA 202
Score = 53.4 bits (127), Expect = 2e-08
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 16/100 (16%)
Query: 120 ETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI 179
++ G +LV V + + CD + W+KDG++I +
Sbjct: 2 QSIKGNHLVKVYDY--------QEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKK 50
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
++ G Y+C S + +
Sbjct: 51 -----WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSA 85
Score = 35.6 bits (81), Expect = 0.022
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 5 RSENYELNKNMLTIKRV-EPERLGAYTCQAYNGLGRAVSWTVTLQA 49
+N +++ L++K E E+ G Y C ++ + L+A
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 63.2 bits (154), Expect = 8e-11
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRIT--ESNRLHINQANAT 193
G + C + V W +G V+ + RI L+
Sbjct: 349 ADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 194 DSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224
D+G Y C+ SNS + + T+ V G H
Sbjct: 408 DTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 30.5 bits (69), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
L V + G YTC N +G + + TL +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTA-SATLNVTGT 434
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 63.1 bits (154), Expect = 8e-11
Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 41/220 (18%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
D L +A S+ K+A +IR L + E+ + + GSS MP K N
Sbjct: 225 LQRDRHAHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRN 281
Query: 422 PTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIAD 473
P E +T +A + G + +E NV + + S+ R I + +
Sbjct: 282 PIGSENMTGLARVIRGYMMTA--------YE-NVPLWHERDISHSSAERVILPDATIALN 332
Query: 474 SATAFTDKCVSGIVANEENIHR--------LLHESLMLVTALNPH-IG----YDKAAKIA 520
V + EN+ R + + +ML L + YD A
Sbjct: 333 YMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVML--TLIDKGMVREEAYDIVQPKA 390
Query: 521 KTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
A + K LT+EE N+ E +
Sbjct: 391 MEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQ 430
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 62.1 bits (151), Expect = 2e-10
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRIT--ESNRLHINQANATDSGEYR 199
G + C P+ V W G V+ + H RI+ L+ + +D+G Y
Sbjct: 366 EGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYT 423
Query: 200 CVASNSYTSDENAVTIRVEGIFIHPS 225
C+ +N + + + V H
Sbjct: 424 CMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 28.6 bits (64), Expect = 6.4
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L V G YTC N G + + + L
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNS-NASAYLN 440
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 62.0 bits (151), Expect = 2e-10
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKD-GQVIEND-GVHYRITESNRLHINQANATDSGEYRCV 201
G + C DG P P + W ++ + L + A D+G Y C+
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 202 ASNSYTSDENAVTIRV 217
A+N+ +D + V
Sbjct: 460 AANAGGNDSMPAHLHV 475
Score = 30.5 bits (69), Expect = 1.6
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L ++ + + G Y C A N G S L
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAANAGGND-SMPAHLH 474
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 57.1 bits (137), Expect = 3e-10
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 124 GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF--WYKDGQVIENDGVHYRITE 181
G + V ++ + ++ VG + + C + W ++ + R +
Sbjct: 4 GYRIYDVVLSPSHGIELS-VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62
Query: 182 SNR----------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ L I+ +D G Y C AS+ + +N+ +RV
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
Score = 34.7 bits (79), Expect = 0.021
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALP 51
LTI V G YTC A +GL S V + P
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 59.0 bits (142), Expect = 4e-10
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 143 VGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVHYRITE----------SNRLHINQA 190
VG + + C + W ++ + R + + L I+
Sbjct: 119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 178
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVEG 219
+D G Y C AS+ + +N+ +RV
Sbjct: 179 TRSDQGLYTCAASSGLMTKKNSTFVRVHE 207
Score = 41.7 bits (97), Expect = 2e-04
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 142 GVGSDISIPCDVDGYPIPQVFWYK--DGQVIENDGVHYRITESNRLHINQANATDSGEYR 199
+ IPC V + DG I + +G
Sbjct: 22 NKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 80
Query: 200 CVASNSYTSDENAVTIRVE 218
C A + S ++ + I V
Sbjct: 81 CEAKINDESYQSIMYIVVV 99
Score = 34.4 bits (78), Expect = 0.067
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSE 53
LTI V G YTC A +GL S V + P E
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211
Score = 29.4 bits (65), Expect = 2.2
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
+K TI G C+A S + +
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR 103
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 58.2 bits (140), Expect = 5e-10
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 131 KVNITLETQVF-GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
K+ T E++ +G +S+ C G P W N G ++ L +N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNP 60
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ + Y C A+ E + + + P
Sbjct: 61 VSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE 96
Score = 44.8 bits (105), Expect = 2e-05
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 19/119 (15%)
Query: 117 YLKETQNGGYLVPVKVNITL----------ETQVFGVGSDISIPCDVDG-YPIP--QVFW 163
YL + + + + + G I++ C V YP ++
Sbjct: 69 YLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 164 YKDGQVIENDGVHYRI------TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216
K ++++ T+S + C A ++ T+R
Sbjct: 129 LKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187
Score = 28.2 bits (62), Expect = 5.3
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
E + LT+ V +Y C A + + ++
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVE 87
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 60.4 bits (147), Expect = 6e-10
Identities = 43/217 (19%), Positives = 71/217 (32%), Gaps = 41/217 (18%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
D L VA + +IA +IR L R + E+ P + + GSS MP K NP
Sbjct: 216 DRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPIT 272
Query: 425 CEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIADSAT 476
CE LT ++ + E N+ + + S+V R +
Sbjct: 273 CERLTGLSRMMRAYVDPS--------LE-NIALWHERDISHSSVERYVFPDATQTLYYMI 323
Query: 477 AFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPH-IG----YDKAAKIAKTA 523
V + NEE + + + + ++L L + YD + A
Sbjct: 324 VTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLL--KLIEKGLTRKEAYDIVQRNALKT 381
Query: 524 HKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
L+ +T+EE + L
Sbjct: 382 WNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLK 418
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 57.7 bits (139), Expect = 6e-10
Identities = 7/74 (9%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
S+ ++ C+V ++ Y+ + + + ++ ++C A
Sbjct: 110 CSNATLTCEVLEGTDVELKLYQGKEH---------LRSLRQKTMSYQWTNLRAPFKCKAV 160
Query: 204 NSYTSDENAVTIRV 217
N + + +
Sbjct: 161 NRVSQESEMEVVNC 174
Score = 51.5 bits (123), Expect = 8e-08
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 140 VFG-VGSDI--SIPCDVDGYPIPQVFWYKDGQVIE---------NDGVHYRITESNRLHI 187
V+G +G I +IP I +V W + ++ + I + L I
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVE 218
DSG Y ++ + + +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLR 96
Score = 33.0 bits (75), Expect = 0.12
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 4 VRSENYELNKNM-LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN 59
++S +E+ N L IK + + G Y Y+ G + L E V+ P
Sbjct: 50 LKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL-NKALDLRILEMVSKPM 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 1e-09
Identities = 81/643 (12%), Positives = 168/643 (26%), Gaps = 225/643 (34%)
Query: 10 ELNKNMLTIKRV-----EPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVA----DPNA 60
++ K++L+ + + + + +G + WT+ + E V +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAV--------SGT-LRLFWTLLSK--QEEMVQKFVEEVLR 88
Query: 61 IDYGTILSSAFPSESASPVVTQTTTTTTEA---TSPHVYAALTHCVPWSNVC---LFGAR 114
I+Y L S +E P + V+A NV +
Sbjct: 89 INYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-------NVSRLQPYLKL 140
Query: 115 SGYLKETQNGGYLVPVKVNITLETQVFGVG------------SDISIPCDVDGYPIPQVF 162
L E + ++ + GV + C +D ++F
Sbjct: 141 RQALLELRPAKNVL-----------IDGVLGSGKTWVALDVCLSYKVQCKMDF----KIF 185
Query: 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
W + V + +L + R S++ +++ + +
Sbjct: 186 WLNLKNCNSPETV---LEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 223 ---HPSC----RD------LPLFA-NCKLIVEGRYCQ----------HHYYSQFCCESCT 258
+ +C + F +CK+++ R+ Q H + T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 259 --------------RAGQLPSYGPHIKRAVEAEA---------AAADKKRRSRRS-LSVV 294
R LP E A + + + V
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 295 NKWSLRQAFTTCYPVNLDPNDRQAL-----------NI----VSIFYFTYLVKLSELLET 339
N L + L+P + + + +I +S+ +F + ++
Sbjct: 351 NCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 340 KCAAK----------IAELTGLPFKSAPNKFEALAAHDALVE------------------ 371
K + + + A H ++V+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 372 -----------VSGALNTVAVSLM-KIANDIRFLASGPRCGLGELSLPENEPGSSIMPGK 419
+ + ++L + D RFL R S N GS
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR----HDSTAWNASGS------ 519
Query: 420 VNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFT 479
+ T L +L +KP I N + RL+ F
Sbjct: 520 ILNT----LQ----------------------QLKFYKPYICDNDPKYERLVNAILD-FL 552
Query: 480 DKCVSGIVANEENIHRLLHESLMLVTALNPHIG-YDKAAKIAK 521
K EEN+ + L+ + + +++A K +
Sbjct: 553 PKI-------EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 35.2 bits (80), Expect = 0.057
Identities = 46/358 (12%), Positives = 92/358 (25%), Gaps = 128/358 (35%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVA-------------- 56
L+ T ++ + + + L + + Q LP E +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 57 -DPNAIDY---------GTILSSAFPSESASPVVTQTTTTTTEATSPHVYAAL------- 99
D TI+ S+ P + ++ L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYR-----------KMFDRLSVFPPSA 385
Query: 100 -----THCVPWSN---------VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGS 145
+ W + V S K+ + +P +I L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYL--------- 433
Query: 146 DISIPCD---------VDGYPIPQVFWYKDGQVIENDGVHYRITESNRL--HINQANATD 194
++ + + VD Y IP+ F D D Y + + H+ +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----SHIGHHLKNIEHPE 488
Query: 195 S-GEYRCVASNSYTSD---ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYS 250
+R V + E IR + + S L K +Y
Sbjct: 489 RMTLFRMV----FLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLK-----------FYK 531
Query: 251 QFCCESCTRAGQ--------LPSYGPHIKRA-----------VEAEAAAADKKRRSRR 289
+ C++ + + LP ++ + E EA + ++ +R
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 57.4 bits (138), Expect = 1e-09
Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
+ + + + +++ C + + W + Q ++ ++++N
Sbjct: 107 HQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE-RMTLSQNNSI 164
Query: 185 LHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
L I+ D+GEY+C SN + N++ + +
Sbjct: 165 LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 46.6 bits (110), Expect = 5e-06
Identities = 14/114 (12%), Positives = 26/114 (22%), Gaps = 19/114 (16%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--------------- 175
+V I +++ + + WYK + +
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 176 ---HYRITESNRLHINQANATDSGEYRCVASNS-YTSDENAVTIRVEGIFIHPS 225
I + L D G Y ++ Y + V V P
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF 114
Score = 40.0 bits (93), Expect = 9e-04
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
N ++L I ++ E G Y C+ N + S ++ L
Sbjct: 161 NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197
Score = 33.5 bits (76), Expect = 0.13
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L + + + +G YT + R TV
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRF 104
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 54.7 bits (131), Expect = 2e-09
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVHYRITESNR---------- 184
ETQ GSD+S C + W D + +++ + +
Sbjct: 18 ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77
Query: 185 LHINQANATDSGEYRCVASNSYTSD 209
L + T G Y+CV SN + S
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSS 102
Score = 32.4 bits (73), Expect = 0.095
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L ++ VE G Y C N G + S L
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 56.8 bits (136), Expect = 3e-09
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 23/112 (20%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH------------ 176
T E G+DI++ C V WY EN
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 177 -----------YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + L I A TD+G C + + + +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 47.2 bits (111), Expect = 5e-06
Identities = 14/115 (12%), Positives = 23/115 (20%), Gaps = 34/115 (29%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVD---GYPIPQVFWYKDGQVIENDG------------ 174
+ V T G + +PC P + W K +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 175 -------------------VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210
+ L + + D G Y C + E
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117
Score = 33.7 bits (76), Expect = 0.12
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
L I+ + G C+ G G + +
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGE-LDADRSS 245
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 55.6 bits (133), Expect = 1e-08
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVF---WYKDGQVIENDGVHYRITESN 183
+ V+I + F G ++ V G P+P W KD Q EN+ +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------TA 52
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L + A + ++G Y+ ++ T + +
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIV 94
Score = 51.4 bits (122), Expect = 3e-07
Identities = 24/200 (12%), Positives = 54/200 (27%), Gaps = 56/200 (28%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
+TI+ ++ G YT + + + + T L + V +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES-----KTVALGNE 201
Query: 76 ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNIT 135
S + +++ N+T
Sbjct: 202 ISLNYVVSEDIVGDSSGM--------------------------------------PNLT 223
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
++ + +G P + + G+ +E + IT L A D+
Sbjct: 224 IKYNWY---------LQREGQLSPTLIGSEVGEALEG----FSITPDGHLFKESATYDDT 270
Query: 196 GEYRCVASNSYTSDENAVTI 215
++ CVA ++ V +
Sbjct: 271 AKFWCVAKLYQQIEDETVEV 290
Score = 43.7 bits (102), Expect = 9e-05
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 17/100 (17%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVD---GYPIPQVF-----WYKDGQVIENDGVHY 177
+ + +D+ + V G + W K VI+
Sbjct: 89 EAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT----- 143
Query: 178 RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + I + A +G Y + + ++
Sbjct: 144 ----TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 55.3 bits (134), Expect = 2e-08
Identities = 41/186 (22%), Positives = 63/186 (33%), Gaps = 37/186 (19%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCE 426
++ ++ AL +A ++A +IR L+ R +GE+ E GSS MP K NPT E
Sbjct: 221 ESFAVLASALALMAAVFERLAVEIRELS---RPEIGEVV--EGGGGSSAMPHKANPTASE 275
Query: 427 ALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIADSATAF 478
+ +A V FE NV + L S R L D
Sbjct: 276 RIVSLARYVRALTHVA--------FE-NVALWHERDLTNSANERVWIPEALLALDEILTS 326
Query: 479 TDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIG-----YDKAAKIAKTAHK 525
+ + + +EE I L E M + Y KA ++ +
Sbjct: 327 ALRVLKNVYIDEERITENLQKALPYILTEFHMN--RMIKEGASRAEAYKKAKEVKALTFE 384
Query: 526 EGTTLK 531
Sbjct: 385 YQKWPV 390
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 55.4 bits (132), Expect = 3e-08
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 6/107 (5%)
Query: 126 YLVPVKVNITLETQV-FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
++ ++T + V + C V G+ + ++
Sbjct: 227 VYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK 286
Query: 185 -----LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSC 226
+ I D+G Y C A + E + + S
Sbjct: 287 DGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEEST 333
Score = 51.5 bits (122), Expect = 5e-07
Identities = 31/281 (11%), Positives = 68/281 (24%), Gaps = 52/281 (18%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
I++ + + I ++ G Y CQA + P ++ +
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR 232
Query: 62 DYGTILSSAFPSES--------ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLF-- 111
T + P + S T + P F
Sbjct: 233 GSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSV 292
Query: 112 ---------------GARSGY------LKETQNGGYLVPVKVNITLETQVFGVGSDISIP 150
GA S + + + GS +++
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352
Query: 151 CDVDGYPIPQV-FWYKDG--------QVIENDGV-------HYRITESNR-----LHINQ 189
C + + +W +++++G + E + +NQ
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230
+ D+G Y C+ + +EG ++
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVT 453
Score = 49.2 bits (116), Expect = 2e-06
Identities = 35/256 (13%), Positives = 59/256 (23%), Gaps = 55/256 (21%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGR---AVSWTVTLQALPSEKVADPNAIDYGTILSSAF- 71
+ I + E G Y C A++ + L + + G SS
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAV 351
Query: 72 --------------------PSESASPVVTQTTTTTTEATSPHV-----YAALTHCVPWS 106
P++ + + T V +
Sbjct: 352 LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN 411
Query: 107 NV---------CLFGARSGYLKETQNGGYLVPVKVNITLETQVFG-VGSDISIPCDVD-- 154
+ C L T ++ + N+ + V +G + +PC
Sbjct: 412 QLTSRDAGFYWC--LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCK 469
Query: 155 --GYPIPQVFWYKDGQVIENDGVHYRITESNR---------LHINQANATDSGEYRCVAS 203
Y W G L +N D G Y C
Sbjct: 470 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529
Query: 204 NSYTSDEN-AVTIRVE 218
+ E AV + VE
Sbjct: 530 QGHFYGETAAVYVAVE 545
Score = 46.5 bits (109), Expect = 2e-05
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 109 CLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV-FWYKDG 167
C G S L + + + +G ++I C + YK
Sbjct: 92 CGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI 151
Query: 168 -----QVIENDG---------VHYRITESNR----LHINQANATDSGEYRCVASNSYTSD 209
VI++ G + I + + + INQ +D+G+Y C A + S+
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN 211
Query: 210 ENAVTIRV 217
+ ++V
Sbjct: 212 KKNADLQV 219
Score = 44.6 bits (104), Expect = 7e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 143 VGSDISIPCDVD---GYPIPQVFWYKDG-----QVIENDGVHYRITESNR---------- 184
G+ +SI C + +W + G + + + + R
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVT 214
++I Q + DSG Y+C + V+
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS 106
Score = 37.3 bits (85), Expect = 0.014
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 6/78 (7%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
LT+ V G Y C G + V + V + A + + +
Sbjct: 511 LTLNLVTRADEGWYWCGVKQGHFYGETAAVYV------AVEERKAAGSRDVSLAKADAAP 564
Query: 76 ASPVVTQTTTTTTEATSP 93
V+
Sbjct: 565 DEKVLDSGFREIENKAIQ 582
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 52.7 bits (126), Expect = 5e-08
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRL-HINQA---NATDSGE 197
V S+ + C +GYP +V W D QV+ +L ++ N T +
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189
Query: 198 YRCVASNSYTSDENAVTIRVEG 219
+ C + + + +
Sbjct: 190 FYCTFRRLDPEENHTAELVIPE 211
Score = 46.5 bits (110), Expect = 7e-06
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQ-----VFWYKDGQVI------ENDGVHYRIT 180
V + + V GS+++I C V+W + + I E D +
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 181 ESNR--------------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSC 226
R L I D+G YRC+ S +D +T++V + +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ 122
Query: 227 R 227
R
Sbjct: 123 R 123
Score = 28.8 bits (64), Expect = 3.4
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
N+ + R+ + C + T L
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPE-ENHTAELV 208
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 53.4 bits (129), Expect = 7e-08
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEP------GSSIMPGKV 420
D + E + L+ V +L K DI +A +E GSS MP K
Sbjct: 232 DGIAEFANLLSLVTGTLGKFGQDIALMAE-----------IGSEIRLSGGGGSSAMPHKQ 280
Query: 421 NPTQCEALTMVAAQVMGNHVAV 442
NP E L +A A+
Sbjct: 281 NPVNAETLVTLARFNAVQISAL 302
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.9 bits (126), Expect = 1e-07
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 137 ETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
G +++ C V+ V W + + RL + DS
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR-RLLLRSVQLHDS 72
Query: 196 GEYRCVASNSYTS 208
G Y C +
Sbjct: 73 GNYSCYRAGRPAG 85
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 52.7 bits (127), Expect = 2e-07
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 15/140 (10%)
Query: 371 EVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEAL 428
EV L ++ S+ KI DIR LA L E+ P + + GSS MP K NP + E
Sbjct: 272 EVLSVLASLGASVHKICTDIRLLA-----NLKEMEEPFEKQQIGSSAMPYKRNPMRSERC 326
Query: 429 TMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR----LIADSATAFTDKCVS 484
+A +M + S FE + S R L AD+
Sbjct: 327 CSLARHLMTLVMDPLQTASVQWFERTLDD----SANRRICLAEAFLTADTILNTLQNISE 382
Query: 485 GIVANEENIHRLLHESLMLV 504
G+V + I R + + L +
Sbjct: 383 GLVVYPKVIERRIRQELPFM 402
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 48.8 bits (116), Expect = 3e-07
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 15/76 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNR------------LHINQ 189
G +++ C + W G I + Y + ++++ + +
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNE--YPVLKNSKYQLLHHSANQLSITVPN 72
Query: 190 ANATDSGEYRCVASNS 205
D G Y+C+ +
Sbjct: 73 VTLQDEGVYKCLHYSD 88
Score = 33.8 bits (77), Expect = 0.034
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
+T+ V + G Y C Y+ V + A +
Sbjct: 68 ITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRY 110
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 51.9 bits (125), Expect = 3e-07
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 23/144 (15%)
Query: 371 EVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEP------GSSIMPGKVNPTQ 424
++ +L+ + + K+ DIR L GEL EP GSS MP K NP +
Sbjct: 246 QLVFSLSLLGAAAKKVCTDIRVLQ-----AFGELL----EPFEKDQIGSSAMPYKKNPMK 296
Query: 425 CEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR----LIADSATAFTD 480
E ++ +++ ++ E + S R + L A++
Sbjct: 297 SERCCALSRKLINAPQEALTILADQGLERTLDD----SAGRRMLIPDVLLTAEALLTTLQ 352
Query: 481 KCVSGIVANEENIHRLLHESLMLV 504
G+ +N+ +++ + + +
Sbjct: 353 NIFEGLSVQTDNVKKIVEDEIAFL 376
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 47.9 bits (114), Expect = 4e-07
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
P+ N+T+ G + C VD + W Q + NR
Sbjct: 10 FPLTQNVTVV-----EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDK-KALRDNRIEL 63
Query: 185 ---------LHINQANATDSGEYRCVAS 203
+ ++ + +D G+Y C
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSLF 91
Score = 27.5 bits (61), Expect = 4.5
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALP 51
+++ V G YTC + + +T+ +P
Sbjct: 73 ISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 49.1 bits (117), Expect = 4e-07
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL 185
Y + K I E S+ ++ C+V ++ Y+ + + + +
Sbjct: 103 YEMVSKPMIYWEC------SNATLTCEVLEGTDVELKLYQGKEHLRS---------LRQK 147
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRV 217
++ ++C A N + + +
Sbjct: 148 TMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 36.8 bits (85), Expect = 0.008
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWYKDGQ---VIENDGVHYRITES---NRLHINQANAT-- 193
GS++++ ++ W + + ES +R+ +++ N
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 194 -------DSGEYRCVASNSYTSDENAVTIRV 217
D G+Y + T D+ +T+ V
Sbjct: 73 IYNVSKEDRGDYYMRMLHE-TEDQWKITMEV 102
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 50.3 bits (119), Expect = 5e-07
Identities = 20/169 (11%), Positives = 38/169 (22%), Gaps = 35/169 (20%)
Query: 113 ARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQV 169
R + V + +V VG + C + + +V W
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPRDLRVR-VGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161
Query: 170 IENDGVHYRITESNR--------------------------LHINQANATDSGEYRCVAS 203
+ + R + + +D G Y C
Sbjct: 162 HTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIY 221
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKL---IVEGRYCQHHYY 249
+ + V + P K I+ G HH++
Sbjct: 222 VGKLESRKTIVLHV--VQDEFQRTISPTPPTDKGQQGILNGNQHHHHHH 268
Score = 47.2 bits (111), Expect = 6e-06
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 25/109 (22%)
Query: 143 VGSDISIPCDV---DGYPIPQVFW---------------YKDGQVIENDGVHYRITESNR 184
VG + + C V + + +V W Y + R
Sbjct: 19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD 78
Query: 185 -------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSC 226
L + D G Y C S + + + P
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127
Score = 35.2 bits (80), Expect = 0.037
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSE 53
+ ++ V+ G YTC Y G + T+ L + E
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHVVQDE 239
Score = 32.2 bits (72), Expect = 0.38
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51
L ++ V+ G YTC+ V V L LP
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP 122
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 48.8 bits (116), Expect = 6e-07
Identities = 7/79 (8%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
++ S+ ++ C+V ++ Y+ + + + ++ +
Sbjct: 100 MIYWECSNATLTCEVLEGTDVELKLYQGKEHL---------RSLRQKTMSYQWTNLRAPF 150
Query: 199 RCVASNSYTSDENAVTIRV 217
+C A N + + +
Sbjct: 151 KCKAVNRVSQESEMEVVNC 169
Score = 45.3 bits (107), Expect = 9e-06
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 139 QVFG-VGSDISIPCDVDGYPIPQVFWYKDGQVI---ENDGVHYRITESNRLHINQANAT- 193
Q++G V +++ + P+ +V W K + EN + NR++++ + +
Sbjct: 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 194 --------DSGEYRCVASNSYTSDENAVTIRV 217
D EY + N + + + V
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTMK--FFLYV 92
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 50.8 bits (121), Expect = 8e-07
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 134 ITLETQVFGVGSDISIPC-------DVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
I+ E+ V + S+ + C D + W + I + + I +
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTIINRTASSV 66
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
A+ + + C ++N I +
Sbjct: 67 TFTDIASLNIQLTCNILTFGQLEQNVYGITI 97
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 42/221 (19%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
D + ++ +A ++ ++A +IR L R + E+ + + GSS MP K N
Sbjct: 214 IPRDRIAKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKN 270
Query: 422 PTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIAD 473
P E LT +A + + E N + + S+ R I
Sbjct: 271 PISTENLTGMARMLRSHVSIA--------LE-NCVLWHERDISHSSAERFYLPDNFGIMV 321
Query: 474 SATAFTDKCVSGIVANEENIHR--------LLHESLMLVTALNPH-IG----YDKAAKIA 520
A + +V + I L L + Y ++A
Sbjct: 322 YALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHF--LVANTPFMREDCYKIVQQVA 379
Query: 521 KTAHKEGTTLK-----VAALKLGYLTEEEFNKWVVPEDMLG 556
+ + K + L E + + + L
Sbjct: 380 FDLKQGESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLK 420
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 47.9 bits (113), Expect = 1e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G+ + + C +D + W K+GQ + + + + + + DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQ------DFSEVEDSGYYVCYTP 65
Query: 204 NSYTSDENAVTIRV 217
S + + RV
Sbjct: 66 ASNKNTYLYLKARV 79
Score = 41.4 bits (96), Expect = 3e-04
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 8/124 (6%)
Query: 85 TTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVG 144
T + ++Y + K+ K ++
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204
+ + C + + W KDG +I N ++ G Y+C +
Sbjct: 123 GSVLLTCGL---TDKTIKWLKDGSIISPLNAT-----KNTWNLGNNAKDPRGTYQCQGAK 174
Query: 205 SYTS 208
++
Sbjct: 175 ETSN 178
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 49.4 bits (117), Expect = 2e-06
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESNR----LHINQANATDSGE 197
G + C G + + G + + ++T S R ++ D+G+
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 198 YRCVASNSYTSDENAVTIRV 217
YRC+ + V
Sbjct: 238 YRCMIRTEGGVGISNYAELV 257
Score = 35.1 bits (80), Expect = 0.058
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 15 MLTIKRVEPERLGAYTCQAYNGLGRAVS-WTVTLQALPSEKVADPNAID 62
+ G Y C G +S + + P +A P
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLAS 272
Score = 34.8 bits (79), Expect = 0.074
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 7/59 (11%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
V+ P+ W G R L I+ V ++ +
Sbjct: 98 VKVNNGPLGNPIWNISGD-------PTRTWNRAELAISTFWPNFYQVIFEVITSGHQGY 149
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 47.6 bits (113), Expect = 3e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
V G +IS+ C P + K+G++ H + + SG Y
Sbjct: 115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIY 172
Query: 199 RCVASNSYTSDE-----NAVTIRVEG 219
RC + + NA+ + V
Sbjct: 173 RCYGWYNRSPYLWSFPSNALELVVTD 198
Score = 42.6 bits (100), Expect = 1e-04
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 144 GSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCV 201
+ I C + Q+ K+ E E+ I+ +A +G Y+C
Sbjct: 23 DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ 82
Query: 202 ASNSYTSDE--NAVTIRVEGIFIHPS 225
+ + + + V G++ P
Sbjct: 83 YRIGHYRFRYSDTLELVVTGLYGKPF 108
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 44.6 bits (105), Expect = 5e-06
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---------GVHYRI 179
++ LE G D D+ I Q W+ +G+ ++++ + YRI
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 180 TESNRLH---INQANATDSG-EYRCVASNSYTS 208
+ H ++ DSG S
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGVQDS 98
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 47.8 bits (112), Expect = 7e-06
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
+ C + +VFW V++ + Y + L I + DSG Y+C++
Sbjct: 549 GTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLS 605
Score = 30.5 bits (67), Expect = 1.9
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGT 65
+ + + L I + G Y C + + + V + + KV P + T
Sbjct: 578 PKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV-PKPVVAPT 636
Query: 66 ILSSAFPSESASPVVTQTTTTTTEA 90
+ + V +T
Sbjct: 637 LSVVQTEGSRIATKVLVASTKHHHH 661
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 46.8 bits (110), Expect = 8e-06
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQ--VFWYKDGQVIENDGVHYRITES 182
Y P +V + VG ++++ C V+G P V + + ++ + E
Sbjct: 83 YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV 142
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + C +
Sbjct: 143 T-TTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
Score = 41.0 bits (95), Expect = 5e-04
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQVIENDGV-HYRITE 181
+++P + +V V + ++ C +DG QV Q +
Sbjct: 185 FVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 244
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ A + C S E T+ +
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 32.5 bits (73), Expect = 0.34
Identities = 8/89 (8%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIENDGVHYRITESNRLHIN 188
+ +++ + G + + C + + + G +NR
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG-------NNRKVYE 53
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
+N + + C ++ + V
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTV 82
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 46.8 bits (111), Expect = 8e-06
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDS 195
+ G + + C D F +K+G + + +I + I +
Sbjct: 128 PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 196 GEYRCVASNSYTSDE-----NAVTIRVEGIFIHPS 225
G YRC S ++T + + + I V G + PS
Sbjct: 187 GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS 221
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGE 197
G +++ C ++G E ++ + + AT G
Sbjct: 228 PKVQAGESVTLSCSSRSSYDM-YHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGT 286
Query: 198 YRCVASNSYTSDE-----NAVTIRVEGIFIHPS 225
YRC S ++ E + + + V G +PS
Sbjct: 287 YRCFGSFRHSPYEWSDPSDPLLVSVTG---NPS 316
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 12/94 (12%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G +++ C YK+ ++ + +++ +G Y C S
Sbjct: 38 GGHVTLRCHYRH-RFNNFMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYTCRGS 94
Query: 204 N-------SYTSDENAVTIRVEGIFIHPSCRDLP 230
+ S S+ V I V G PS P
Sbjct: 95 HPHSPTGWSAPSN--PVVIMVTGNHRKPSLLAHP 126
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 45.7 bits (108), Expect = 9e-06
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 115 SGYLKETQNGGYLVPVKVNITLETQVFGVGSD-ISIPCDV-DGYPIPQVFWYKDGQVIEN 172
S L + +T +Q+F + + + C V D W G + +
Sbjct: 94 SAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ ++ R+ +Y C+A N+ ++ +V+ +
Sbjct: 154 QP-NLTVSWDPRIS-------SEQDYTCIAENAVSNLSFSVSAQK 190
Score = 37.3 bits (86), Expect = 0.006
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 138 TQVFG-VGSDISIPCDVD-GYPIPQVFWYKDGQVI-----------------ENDGVHYR 178
V G +G +++P + G + + W + + G
Sbjct: 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLN 65
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216
T+S L ++ D+G YR S ++ ++ T+R
Sbjct: 66 FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR 103
Score = 28.4 bits (63), Expect = 4.3
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL 50
N+ YTC A N + S++V+ Q L
Sbjct: 154 QPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSVSAQKL 191
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 44.8 bits (106), Expect = 2e-05
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
Query: 101 HCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLET-QVFGVGSDISIPCDVDGYPIP 159
C S+ S L+ G Y+ P ++ + V G ++++ CD
Sbjct: 74 RCYYGSDTAGRSESSDPLELVVTGAYIKPT---LSAQPSPVVNSGGNVTLQCDSQVAF-D 129
Query: 160 QVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVASNSYTSDE----- 210
K+G+ ++ + + + + YRC A +S + E
Sbjct: 130 GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPS 189
Query: 211 NAVTIRVEG 219
+ + + V G
Sbjct: 190 DLLELLVLG 198
Score = 36.0 bits (83), Expect = 0.014
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNRLHINQANATDSGEYRCVA 202
GS +++ C + Y++ + + + + + I +G YRC
Sbjct: 19 GSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYY 77
Query: 203 SN-----SYTSDENAVTIRVEGIFIHPS 225
+ S +SD + + V G +I P+
Sbjct: 78 GSDTAGRSESSD--PLELVVTGAYIKPT 103
Score = 28.7 bits (64), Expect = 4.4
Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 12/76 (15%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
K I + E G Y C + + S+ + Y SA
Sbjct: 56 KKGQFPIPSITWEHTGRYRCYYGSD---TAGRSE-----SSDPLELVVTGAYIKPTLSAQ 107
Query: 72 PSESASPVVTQTTTTT 87
P SPVV T
Sbjct: 108 P----SPVVNSGGNVT 119
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.9 bits (105), Expect = 2e-05
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P++V +G+ + C + V W + G T + L +
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD---TSLGAVQSDTGRSVLTV 63
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
A+ + +G CV S + ++ V + V
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 44.4 bits (105), Expect = 3e-05
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 113 ARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172
S L+ G Y P L + + G +++ C K+
Sbjct: 85 QPSDPLELVMTGAYSKPTL--SALPSPLVTSGKSVTLLCQSRSPM-DTFLLCKERAAHPL 141
Query: 173 ---DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-----NAVTIRVEG 219
H ++ + G YRC +S+ ++ + + + V G
Sbjct: 142 LCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSG 196
Score = 38.3 bits (89), Expect = 0.003
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVA 202
G+ ++I C + K+ D + ++ R I +G YRC
Sbjct: 19 GNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYY 77
Query: 203 SNSY----TSDENAVTIRVEGIFIHPS 225
+ SD + + + G + P+
Sbjct: 78 RSPVGWSQPSD--PLELVMTGAYSKPT 102
Score = 28.6 bits (64), Expect = 4.3
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 12/57 (21%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLG------------RAVSWTVTLQALPSEKVA 56
NK +I + + G Y C + +G TL ALPS V
Sbjct: 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVT 112
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 42.6 bits (100), Expect = 3e-05
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 143 VGSDISIPCDV--DGYPIPQVFWYKDGQVI----ENDGVHYRITESNR--------LHIN 188
G I + C + + QV W + Q++ + G H + +R L +
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQ 76
Query: 189 QANATDSGEYRC-VASNSYTSDENAVTIRV 217
D+GEY C + + + + V
Sbjct: 77 SLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 42.9 bits (100), Expect = 5e-05
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 11/74 (14%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-------YRITESN----RLHINQAN 191
G + + C V + + W Q G ++ S + I+
Sbjct: 52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVA 111
Query: 192 ATDSGEYRCVASNS 205
D GEY C
Sbjct: 112 LADEGEYTCSIFTM 125
Score = 30.1 bits (67), Expect = 0.90
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPS 52
++I V G YTC + R VT+ +P
Sbjct: 105 ISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQ 141
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.9 bits (103), Expect = 5e-05
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 144 GSDISIPCDVDG-YPIPQVFWYKD-GQVIENDGVHYRITESNRLHIN---QANATDSGEY 198
I + C G YP PQ+ W + G+ I + +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGV 192
Query: 199 RCVASNSYTSDENAVTIRVEGIFIHPSCRDL 229
C +S E +I + F +
Sbjct: 193 SCTIRSSLLGLEKTASISIADPFFRSAQHHH 223
Score = 42.4 bits (99), Expect = 1e-04
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 25/110 (22%)
Query: 143 VGSDISIPCDVDGYPIPQ--------------VFWYKDGQ-VIENDGVHYR--------- 178
VG D +PC + + V Y DG+ V + YR
Sbjct: 18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDG 77
Query: 179 ITESN-RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCR 227
IT L I+ A+DSG+Y C + ++ V ++V +
Sbjct: 78 ITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD 127
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 40.9 bits (95), Expect = 8e-05
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHI 187
P KV+I+ G+ + + C P ++ W + + I D ++ + L +
Sbjct: 14 PYKVSIS--------GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 63
Query: 188 NQANAT-DSGEYRCVASNSYTSDEN 211
+ + SG Y C S D N
Sbjct: 64 KEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 27.4 bits (60), Expect = 5.0
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 5 RSENYELNKNMLTIKRV-EPERLGAYTCQAYNGLGRAVSWTVTLQA 49
+N +++ L++K E E+ G Y C ++ + L+A
Sbjct: 50 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 95
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.1 bits (101), Expect = 1e-04
Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHY-----RIT 180
L + ++ C G P Q+ W+ D + +T
Sbjct: 114 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVT 173
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
++ + ++ D + C + +T+ +
Sbjct: 174 VTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
Score = 42.0 bits (98), Expect = 2e-04
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 27/113 (23%)
Query: 132 VNITLETQVFG-VGSDISIPCDVDGYPIP-----QVFWYKDGQ----VIENDGVHYRITE 181
V + TQV G +G +++PC + + Q+ W + G+ + + +E
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 182 SNR----------------LHINQANATDSGEYRC-VASNSYTSDENAVTIRV 217
S R L + D G Y C + S + +RV
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 41.5 bits (97), Expect = 1e-04
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 25/108 (23%)
Query: 143 VGSDISIPC------DVDGYPI--------PQVFWYKDGQ-VIENDGVHY--RITESNR- 184
VG + +PC + G + V Y++G+ Y R
Sbjct: 20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES 79
Query: 185 -------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I +D G Y C + +E AV ++VE F +
Sbjct: 80 IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 127
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 41.0 bits (96), Expect = 1e-04
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 26/95 (27%)
Query: 132 VNITLETQVFG-VGSDISIPCDV-----DGYPIPQVFWYKDGQVIE------NDGVHYRI 179
V + TQV G +G +++PC + + + Q+ W + G+ G Y
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 180 TESNR--------------LHINQANATDSGEYRC 200
++ L + D G Y C
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 43.0 bits (101), Expect = 1e-04
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
G ++ C +D K+G+ + G Y
Sbjct: 111 PEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTY 167
Query: 199 RCVASN-----SYTSDENAVTIRVEGIFIHPS 225
RC S S+ S+ V + V G + S
Sbjct: 168 RCFGSYNNHAWSFPSE--PVKLLVTGDIENTS 197
Score = 38.3 bits (89), Expect = 0.003
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVA 202
++I C + Y + + +G + D + + +I N+ +G+Y C+
Sbjct: 21 EKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 79
Query: 203 SNSYTSDE--NAVTIRVEGIFIHPS 225
E N + + V ++ P+
Sbjct: 80 RVGELWSEPSNLLDLVVTEMYDTPT 104
Score = 29.5 bits (66), Expect = 2.6
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
NK I + G Y+C G SE ++ + + +
Sbjct: 58 NKVKFYIPDMNSRMAGQYSCIYRVGELW------------SEP-SNLLDLVVTEMYDTPT 104
Query: 72 PSESASPVVTQTTTTT 87
S P V T
Sbjct: 105 LSVHPGPEVISGEKVT 120
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 42.3 bits (99), Expect = 2e-04
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 22/109 (20%)
Query: 143 VGSDISIPCD----VDGYPIPQVFWYKDGQVI-------ENDGVHYR----ITESNR--L 185
V ++ C V+ +++W K+ +++ N Y+ +N +
Sbjct: 8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67
Query: 186 HINQANATDSGEYRCVASN-----SYTSDENAVTIRVEGIFIHPSCRDL 229
I +D G Y CV VT+ V+ F PS D
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF 116
Score = 41.5 bits (97), Expect = 3e-04
Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 21/123 (17%)
Query: 109 CLFGARSGYLKETQNGGYLVPVKVN-----ITLETQVFGVGSDISIPCDVDG-YPIPQVF 162
C+ + V + V ++ + I C G +P P +
Sbjct: 82 CVVLKYEKD-AFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLS 140
Query: 163 WYKDGQVI---------ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAV 213
W ++G+ + + + Y ++ N T + + C+ +
Sbjct: 141 WLENGEELNAINTTVSQDPETELYAVSSKLDF-----NMTTNHSFMCLIKYGHLRVNQTF 195
Query: 214 TIR 216
Sbjct: 196 NWN 198
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 42.1 bits (98), Expect = 2e-04
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 16/99 (16%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHY--------- 177
V + C+ +G P P++ WY++GQ +E
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 178 ------RITESNRLHINQANATDSGEYRCVASNSYTSDE 210
++ ++ L++ + C A S
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGR 216
Score = 40.9 bits (95), Expect = 5e-04
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 24/99 (24%)
Query: 143 VGSDISIPCDVDGYPIP-QVFWYK-------------DGQVIENDGVHYRITESN----- 183
G + + C G + W+ + Q E + +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 184 ----RLHINQANATDSGEYRC-VASNSYTSDENAVTIRV 217
RL + +A D +Y C V + + + E + V
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Score = 29.4 bits (65), Expect = 2.5
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 5 RSENYELNKNM-LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL--PSEKVADPNA 60
RS Y+L+ L + + Y C G T L P PN
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNK 125
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 42.6 bits (99), Expect = 2e-04
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 133 NITLETQVFGVGSDISIPCDVD-----GYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
+I++ + +G I+ C + P PQ+ W ++ G +
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ--PGGRQQRLSDGTQES 61
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + N T + + + + V +R
Sbjct: 62 IITLPHLNHTQAFLSCSLNWGNSLQILDQVELRA 95
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 42.0 bits (97), Expect = 3e-04
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
L + L+ G + + CD + W D + L
Sbjct: 4 LKKDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSE-------VLGSGKTLT 54
Query: 187 INQANATDSGEYRCVASNSYTS 208
I D+G+Y C S
Sbjct: 55 IQVKEFGDAGQYTCHKGGEVLS 76
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 42.1 bits (98), Expect = 4e-04
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 122 QNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE 181
+ ++ + + + +V VGSDI+ C + + + + +I DG + I
Sbjct: 191 KQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKI 250
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSD 209
N I+ + ++ + N + +
Sbjct: 251 RN---ISVSASSGTNVVFTTEDNIFGTV 275
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.0 bits (95), Expect = 4e-04
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 32/116 (27%)
Query: 143 VGSDISIPCDVDGY-------PIPQVFWYKDGQVIE--------NDGVHYRITESNR--- 184
G + +PC P V+W++DG++ N + R
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 185 ----------LHINQANATDSGEYRCVASNS----YTSDENAVTIRVEGIFIHPSC 226
L I A D+G Y Y+ +N + + V + P
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDI 129
Score = 37.9 bits (87), Expect = 0.004
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 6/72 (8%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY- 206
S+P + P W + + T S+ L + C
Sbjct: 146 SLPGSCEAGPPLTFSWTGNA----LSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGA 201
Query: 207 -TSDENAVTIRV 217
+ E V + V
Sbjct: 202 QVTTERTVQLNV 213
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVA 202
++I C + Y + + +G + D + + +I N+ +G+Y C+
Sbjct: 18 EKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76
Query: 203 SNSYTSDE--NAVTIRVEGIFIHPS 225
E N + + V ++ P+
Sbjct: 77 RVGELWSEPSNLLDLVVTEMYDTPT 101
Score = 39.8 bits (93), Expect = 8e-04
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
G ++ C +D K+G+ + G Y
Sbjct: 108 PEVISGEKVTFYCRLDTATSM-FLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTY 164
Query: 199 RCVASN-----SYTSDENAVTIRVEG 219
RC S S+ S+ V + V G
Sbjct: 165 RCFGSYNNHAWSFPSE--PVKLLVTG 188
Score = 29.0 bits (65), Expect = 2.9
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 12/57 (21%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLG------------RAVSWTVTLQALPSEKVA 56
NK I + G Y+C G + T TL P +V
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 111
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 41.8 bits (98), Expect = 4e-04
Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 22/182 (12%)
Query: 363 LAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNP 422
+ HD + E+ L +L+ + DI S L +L + E E GSS MP KVNP
Sbjct: 248 IQDHDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNP 304
Query: 423 TQCEALTMVA--AQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRL-IADSATAF- 478
E A + + S + + L S VLR+I +A A+
Sbjct: 305 IDFENAEGNLHIANAFFKLFSSKLPTS--RLQ----RDLSDSTVLRNIGSSLAYCLIAYK 358
Query: 479 -TDKCVSGIVANEENIHR-------LLHESLMLV-TALNPHIGYDKAAKIAKTAHKEGTT 529
K ++ I + N+ L E + +V N Y++ + + +
Sbjct: 359 SVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKI 418
Query: 530 LK 531
++
Sbjct: 419 MQ 420
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 40.6 bits (95), Expect = 5e-04
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 113 ARSGYLKETQNGGYLVPVKVNITLE-TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE 171
S L+ G Y K ++ + V G ++++ C ++G
Sbjct: 85 EPSDPLELVVTGFY---NKPTLSALPSPVVTSGENVTLQCGSRLRFDR-FILTEEGDHKL 140
Query: 172 NDGVHYRITESNR----LHINQANATDSGEYRCVASNSYTSDE-----NAVTIRV 217
+ + ++T S + + + RC S + + + I V
Sbjct: 141 SWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV 195
Score = 39.1 bits (91), Expect = 0.001
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVA 202
G+ ++I C + K+G D + ++ R I +G YRC
Sbjct: 19 GNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYY 77
Query: 203 SNSYTSDE--NAVTIRVEGIFIHPS 225
+ E + + + V G + P+
Sbjct: 78 YSPAGWSEPSDPLELVVTGFYNKPT 102
Score = 29.8 bits (67), Expect = 1.8
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
NK +I + G Y C Y+ G W+ PS DP + +
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAG----WSE-----PS----DPLELVVTGFYNKPT 102
Query: 72 PSESASPVVTQTTTTT 87
S SPVVT T
Sbjct: 103 LSALPSPVVTSGENVT 118
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 40.7 bits (95), Expect = 6e-04
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRC 200
+ + C D +++G+ + + + I +G YRC
Sbjct: 21 EETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRC 79
Query: 201 VASNSYTSDE-----NAVTIRVEGIFIHPS 225
S +++ + + + I + G++ PS
Sbjct: 80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPS 109
Score = 37.7 bits (87), Expect = 0.006
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGE 197
G +++ C ++G+ E ++ + + AT G
Sbjct: 116 PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGT 174
Query: 198 YRCVASNSYTSDE-----NAVTIRVEGIFIHPS 225
YRC S + E + + + V G +
Sbjct: 175 YRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSW 207
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 38.7 bits (90), Expect = 7e-04
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 23/105 (21%)
Query: 137 ETQVFG-VGSDISIPCDVDG-YPIPQVFWYKDG--------QVIENDGVHYRITESNR-- 184
+V G VG +++PC I W + +I +G +S+R
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 185 -----------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L I + +DSG Y C ++ VT ++
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQ 108
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.8 bits (94), Expect = 0.001
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS- 203
S + C ++ W V ++ ++ L I A G Y C A
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCI-LFIENLTAQQYGHYFCEAQE 573
Query: 204 NSYTSDENAVTIRVEG 219
SY + + E
Sbjct: 574 GSYFREAQHWQLLPED 589
Score = 28.4 bits (62), Expect = 6.6
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAY-NGLGRAV-SWTVTLQA 49
Q ++ +L I+ + ++ G Y C+A R W + +
Sbjct: 540 EQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPED 589
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
G D+++ C Q YK+G + I A SG Y
Sbjct: 103 PAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPY--KNPERWYRASFPIITVTAAHSGTY 159
Query: 199 RCVASNSYTSDE-----NAVTIRV 217
RC + +S + + + V
Sbjct: 160 RCYSFSSRDPYLWSAPSDPLELVV 183
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
+++ C + K D L I + +G YRC
Sbjct: 22 EKPVTLRCQGP-PGVDLYRLEKLSSSRYQD--------QAVLFIPAMKRSLAGRYRCSYQ 72
Query: 204 NSYTSDE--NAVTIRVEGIFIHPS 225
N + + + G+F PS
Sbjct: 73 NGSLWSLPSDQLELVATGVFAKPS 96
Score = 27.5 bits (61), Expect = 8.0
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGR------------AVSWTVTLQALPSEKV 55
++ +L I ++ G Y C NG V +L A P V
Sbjct: 50 DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAV 105
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 37.6 bits (87), Expect = 0.002
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 24/106 (22%)
Query: 137 ETQVFG-VGSDISIPC--DVDGYPIPQVFWYKDG--------QVIENDGVHYRITESNR- 184
T V G G +++PC I + W +I +G ++R
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 185 ------------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L I D G Y CV + V+
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 20/84 (23%)
Query: 144 GSDISIPCDVD----GYPIPQVFWYKD----------------GQVIENDGVHYRITESN 183
GS +PC + I V W++D G++ +
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 184 RLHINQANATDSGEYRCVASNSYT 207
LHI D+ Y C
Sbjct: 82 ELHIRDVRGHDASIYVCRVEVLGL 105
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.9 bits (87), Expect = 0.002
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 119 KETQNGGYLVPVKVNITLET-QVFGVGSDISIPCDVD-GYPIPQVFWYK----DGQVIEN 172
K T+ V++NI + G I C V P V W K +E
Sbjct: 3 KATKRNDEECEVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEV 62
Query: 173 DGVHYRITESNR------LHINQANATDSGEYRCVAS-NSYTSDENAVTIRV 217
Y E NR LH + +D+G Y C + NS + ++VTI V
Sbjct: 63 GPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 40.0 bits (93), Expect = 0.002
Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 22/182 (12%)
Query: 363 LAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNP 422
+ HD + E+ + L+ D+ + + E GSS MP KVNP
Sbjct: 248 IEPHDYIAELFDCVARFNTILIDFDRDVWGYIAL---NHFKQKTIAGEIGSSTMPHKVNP 304
Query: 423 TQCEALTMVA--AQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRL---IADSATA 477
E + + H+A + S + L S VLR++ + A A
Sbjct: 305 IDFENSEGNLGLSNAVLQHLASKLPVSRWQ------RDLTDSTVLRNLGVGIGYALIAYQ 358
Query: 478 FTDKCVSGIVANEENIHR-------LLHESLMLV-TALNPHIGYDKAAKIAKTAHKEGTT 529
T K VS + N +++ +L E + V Y+K ++ + +
Sbjct: 359 STLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEG 418
Query: 530 LK 531
+K
Sbjct: 419 MK 420
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 37.6 bits (87), Expect = 0.002
Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 29/114 (25%)
Query: 134 ITLETQVFG-VGSDISIPCDVD---GYPIPQVFWYKDGQ-------VIENDGVHYRITE- 181
+ V G D+ I C D GY V W + ++ G H + +
Sbjct: 5 LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64
Query: 182 SNR------------LHINQANATDSGEYRC-----VASNSYTSDENAVTIRVE 218
R L IN D Y C + + + +RV
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 37.2 bits (86), Expect = 0.002
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 24/106 (22%)
Query: 137 ETQVFG-VGSDISIPC--DVDGYPIPQVFWYKDG--------QVIENDGVHYRITESNR- 184
E + G +G +++PC + W K +++ DG +S +
Sbjct: 3 EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKY 62
Query: 185 ------------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L I+ N DSG Y C ++ +R+E
Sbjct: 63 TLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLE 108
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 33/106 (31%)
Query: 144 GSDISIPCDVDGYPIPQ--------VFWYKDGQ--------VIENDGVHYRITESNR--- 184
G + + C YP+ +W++ G N + +R
Sbjct: 21 GMCVHVRCSFS-YPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL 79
Query: 185 ----------LHINQANATDSGEYRCVASNS---YTSDENAVTIRV 217
L I A +D+G Y + + +++ V
Sbjct: 80 LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 39.2 bits (91), Expect = 0.003
Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 24/180 (13%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQC 425
HD + EVS + + L+ DI S G + E GSS MP KVNP
Sbjct: 254 HDGIAEVSQIMVRINNILLDYTQDIWSYIS---LGYFKQKTIAEEVGSSTMPHKVNPIDF 310
Query: 426 E---ALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRL---IADSATAFT 479
E ++ + H A + S + + L S VLR++ + + A
Sbjct: 311 ENAEGNLGLSNALF-IHFANKLTQS--RMQ----RDLSDSTVLRNLGVAFSYSLIAYHSV 363
Query: 480 DKCVSGIVANEENIHR-------LLHESLMLV-TALNPHIGYDKAAKIAKTAHKEGTTLK 531
K + N+ + + +L E++ V N Y++ ++ + + LK
Sbjct: 364 AKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLK 423
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 36.8 bits (85), Expect = 0.003
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 24/100 (24%)
Query: 143 VGSDISIPCDVDGYP---IPQVFWYKDG--------QVIENDGVHYRITESNR------- 184
VG + +PC + + W K +++ D + +S+R
Sbjct: 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 185 ------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L I D G Y C ++ + ++++
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLD 107
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 38.7 bits (89), Expect = 0.004
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 134 ITLETQVFGVGSDISIPC-------DVDGYPIPQVFWYKDGQVIENDGVHYR-ITESNRL 185
I+ E+ V + S+ + C D + W + I + T S+
Sbjct: 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVT 68
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ A+ + + +TI
Sbjct: 69 FTDIASLNIQLTCNILTFGQLEQNVYGITIIS 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.005
Identities = 44/235 (18%), Positives = 70/235 (29%), Gaps = 87/235 (37%)
Query: 278 AAAADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDR-------Q-ALNIVSIFYFTY 329
D K ++ + +N+ S F Q AL ++ F
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFR-------SEKGLLSATQFTQPALTLMEKAAF-- 1744
Query: 330 LVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAH-----DALVEVSGALNT-VAVSL 383
E L++K GL A A H AL ++ ++ V +
Sbjct: 1745 -----EDLKSK---------GLIPADA-----TFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 384 MKIANDIRFLASGPRCGLGEL---SLPENEPGSS------IMPGKVNPTQC-EALTMVAA 433
+ R G ++P +E G S I PG+V + EAL V
Sbjct: 1786 VF----YR----------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 434 QV---MGNHV-AVTIGGSN-----------GHFE-LNVFKPLIVSNVLRSIRLIA 472
+V G V V N G L+ ++ L+ I +I
Sbjct: 1832 RVGKRTGWLVEIV-----NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.0 bits (83), Expect = 0.005
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWYK--DGQVIENDGVHYRITES---NRLHINQANAT--- 193
GS++++ Q+ W+ D +++E D + ES R+ ++ +
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 194 ------DSGEYRC-VASNSYTSDENAVTIRV 217
D+ Y V + E + ++V
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 29.5 bits (66), Expect = 1.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L I +V+ E Y + G W + LQ
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 37.6 bits (87), Expect = 0.006
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDS 195
+ + + C D +++G + + + I++ +
Sbjct: 17 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLA 75
Query: 196 GEYRCVASNSYTSDE-----NAVTIRVEGIFIHPS 225
G YRC S +++ + + + I + G++ PS
Sbjct: 76 GTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPS 110
Score = 36.4 bits (84), Expect = 0.011
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDSGE 197
G ++++ C ++G+ E + AT G
Sbjct: 117 PTVLAGENVTLSCSSRSSY-DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGT 175
Query: 198 YRCVASN-------SYTSDENAVTIRV 217
YRC S S +SD + + V
Sbjct: 176 YRCFGSFHDSPYEWSKSSD--PLLVSV 200
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.0 bits (83), Expect = 0.006
Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 30/118 (25%)
Query: 130 VKVNITLETQVFGVGSDISIPC-------DVDGYPI-------------PQVFWYKDGQV 169
+ + E G +PC D I + Y ++
Sbjct: 6 LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKI 65
Query: 170 IENDGVHYR---------ITESN-RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
++ + + + +++ +D G Y+C + + + V
Sbjct: 66 YDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 35.6 bits (82), Expect = 0.009
Identities = 17/83 (20%), Positives = 20/83 (24%), Gaps = 25/83 (30%)
Query: 143 VGSDISIPC------DVDGYPIPQVFWYKDGQ------VIENDGVHYRITESNR------ 184
GS + IPC DV WY D + D R
Sbjct: 14 SGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGN 73
Query: 185 -------LHINQANATDSGEYRC 200
L + DSG Y
Sbjct: 74 MDHKVCNLLLKDLKPEDSGTYNF 96
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 37.5 bits (87), Expect = 0.010
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 19/105 (18%)
Query: 144 GSDISIPCDVDGY-PIP---QVFWYKDGQVIENDGVHYRITESN-------RLHINQANA 192
+ C V + WY DG + N R + N L + +
Sbjct: 264 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 323
Query: 193 TDSGEYRCVASNSY--------TSDENAVTIRVEGIFIHPSCRDL 229
+ EY+C SN S + + PS +L
Sbjct: 324 LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL 368
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 36.5 bits (84), Expect = 0.017
Identities = 28/230 (12%), Positives = 58/230 (25%), Gaps = 42/230 (18%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTI--------- 66
++I + P G Y C + + S + + G
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 67 ----LSSAFPSESAS-------PVVTQTTTTTTEATSPHVYAA-----LTHCVPWSNVCL 110
S F + ++ T Y+ +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVL-TREDVHSQ 194
Query: 111 F-------GARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV-DGYPIP-QV 161
+ L+ T N + V + + Q + +++ C V YP Q+
Sbjct: 195 VICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQL 254
Query: 162 FWYKDGQVIENDGVHYRITESN-------RLHINQANATDSGEYRCVASN 204
W ++G V + + L +N + D + C +
Sbjct: 255 TWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304
Score = 31.1 bits (70), Expect = 0.92
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 17/84 (20%)
Query: 143 VGSDISIPCDVDGY-PIPQVFWYKD-GQVIE----------NDGVHYRITESNR-----L 185
G + C V P+ + W++ G E + +
Sbjct: 17 AGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76
Query: 186 HINQANATDSGEYRCVASNSYTSD 209
I+ D+G Y CV + D
Sbjct: 77 SISNITPADAGTYYCVKFRKGSPD 100
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 32.0 bits (73), Expect = 0.12
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 161 VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN------SYTSDENAVT 214
V + +G + D + ++ N D+G Y+C S SD V
Sbjct: 35 VQLWLNGT-LRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSD--PVE 91
Query: 215 IRVEG 219
+ +
Sbjct: 92 LVLTI 96
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 31.8 bits (72), Expect = 0.14
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 20/95 (21%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWYK-------------DGQVIENDGVHYRITESNR---- 184
VG +S+ C + + +W + G + +G I +S
Sbjct: 10 VGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNG-RVSIRDSPANLSF 68
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + D+G Y C + D + + VE
Sbjct: 69 TVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVE 103
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 33.1 bits (75), Expect = 0.15
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 144 GSDISIPCDVDGYPIPQVFWYK---------------DGQVIENDGVHYRITESNR---L 185
G + ++ C+ P + WYK N + + L
Sbjct: 18 GKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSL 77
Query: 186 HINQANATDSGEYRCVASNSYT 207
HI + +DS Y CV S+ +
Sbjct: 78 HITASQLSDSASYICVVSDRGS 99
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 32.3 bits (74), Expect = 0.16
Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 20/92 (21%)
Query: 143 VGSDISIPCD-VDGYPIPQVFWYK----------------DGQVIENDGVHYRITESNR- 184
+ +++ C +FWYK + +
Sbjct: 14 EKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSS 73
Query: 185 --LHINQANATDSGEYRCVASNSYTSDENAVT 214
L I DS Y C Y N +
Sbjct: 74 IGLIITATQIEDSAVYFCAMRGDYGGSGNKLI 105
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.7 bits (72), Expect = 0.18
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 21/84 (25%)
Query: 143 VGSDISIPCDVDGYPIPQ-----VFWYKDGQ-----VIENDGVHYRITE--SNR------ 184
+PC VFW V + R
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD 67
Query: 185 ---LHINQANATDSGEYRCVASNS 205
L ++ D G Y+C+ +
Sbjct: 68 SWTLRLHNLQIKDKGLYQCIIHHK 91
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 31.7 bits (71), Expect = 0.18
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWYK--DGQVIENDGVHYRITESNR-----LHINQANATD 194
G + C V P V W K ++ + E LH D
Sbjct: 25 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 84
Query: 195 SGEYRCVASNSYTSDEN-AVTIRV 217
+G YRC A+ E+ + T+ V
Sbjct: 85 NGSYRCSANFQSNLIESHSTTLYV 108
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 31.3 bits (72), Expect = 0.22
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
L I RVE E LG Y C
Sbjct: 78 LKISRVEAEDLGVYFCSQST 97
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 32.4 bits (73), Expect = 0.22
Identities = 9/91 (9%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIENDGVHYRITESNRLH 186
+V++ + + + C P+V + +++ ++ + H
Sbjct: 2 VFEVHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETSLNKILLDEQ-------AQWKH 53
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
+N + +C + S + + V
Sbjct: 54 YLVSNISHDTVLQCHFTCSGKQESMNSNVSV 84
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 32.8 bits (74), Expect = 0.22
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 18/82 (21%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK---------------DGQVIENDGVHYRITESNR--- 184
G + + C+ P + WYK N + + +
Sbjct: 15 QGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHST 74
Query: 185 LHINQANATDSGEYRCVASNSY 206
LHI D+ Y CV +
Sbjct: 75 LHITATLLDDTATYFCVVGDRG 96
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 32.4 bits (73), Expect = 0.23
Identities = 7/90 (7%), Positives = 21/90 (23%), Gaps = 7/90 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRITESNRLHI 187
P ++ G + + C + + + G+ + +
Sbjct: 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQ------ 55
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ C + + + IR
Sbjct: 56 LVDIREPETQPVCFFRCARRTLQARGLIRT 85
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 31.2 bits (71), Expect = 0.30
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 143 VGSDISIPCDVDG--YPIPQVFWYKDG------QVIENDGVHYRITESNR-----LHINQ 189
G ++I C + Y + WY+ + I G Y T ++ L IN
Sbjct: 14 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGG-RYVETVNSGSKSFSLRIND 72
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221
D G YRC + + A+
Sbjct: 73 LTVEDGGTYRCGLGVAGGYCDYALCSSRYAEC 104
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 32.2 bits (73), Expect = 0.30
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 11/97 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIP----QVFWYKDGQVIENDGVHYRITESN-------RLHI 187
V G G + C V + W+ D + H +SN L I
Sbjct: 27 DVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPI 86
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224
+ + + ++C ++ +I
Sbjct: 87 VERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRG 123
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 31.9 bits (72), Expect = 0.32
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK---------------DGQVIENDGVHYRITESNR--- 184
G ++ + C I + W++ + + ++ + +S+
Sbjct: 14 EGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRST 73
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L+I + DS Y C +
Sbjct: 74 LYIAASQPGDSATYLCAVRPTSGG 97
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 32.6 bits (74), Expect = 0.33
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 19/105 (18%)
Query: 144 GSDISIPCDVDGYPIP----QVFWYKDGQVIENDGVHYRITESN-------RLHINQANA 192
+ C V Q W+ D + R + N L I +
Sbjct: 245 TVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW 304
Query: 193 TDSGEYRCVASN--------SYTSDENAVTIRVEGIFIHPSCRDL 229
+ E++C ++ S + I P +
Sbjct: 305 LNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQM 349
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable
domain-like beta-sandwich, immune system; 1.56A
{Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Length = 111
Score = 30.7 bits (70), Expect = 0.40
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
L I + G Y C G
Sbjct: 78 LNIIGTREDDGGEYFCGEVEG 98
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 31.9 bits (72), Expect = 0.42
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 144 GSDISIPCDVDGY-PIPQVFWYK--DGQVIE---------NDGVHYRITESNR-----LH 186
+ +PC+ + WY+ Q E + + + L
Sbjct: 14 EEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLI 73
Query: 187 INQANATDSGEYRCVASNSYTSDENAVT 214
+++A D+ Y C+ + + +T
Sbjct: 74 LHRATLRDAAVYYCILPLAGGTSYGKLT 101
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 31.8 bits (72), Expect = 0.44
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 8/91 (8%)
Query: 143 VGSDISIPCDVDGYPIP---QVFWYKDGQVIENDGVHYR-----ITESNRLHINQANATD 194
+GS+ ++ C + G W G R + S+ L
Sbjct: 18 LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH 77
Query: 195 SGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ C A+ + T+ G P
Sbjct: 78 GKTFTCTAAYPESKTPLTATLSKSGNTFRPE 108
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 31.7 bits (72), Expect = 0.48
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 16 LTIKRVEPERLGAYTCQAYNG------------LGRAVSW-TVTLQALPSEKVADPNA 60
L I RVE E LG Y C + L RA + TV++ SE++ A
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGA 172
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 31.8 bits (72), Expect = 0.48
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 24/105 (22%)
Query: 134 ITLETQ-----VFGVGSDISIPCDVDGYPIPQVFWYK--------------DGQVIENDG 174
+TL Q + G +++ C + P + WY+ E
Sbjct: 1 VTLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKS 60
Query: 175 VHYRITESNR-----LHINQANATDSGEYRCVASNSYTSDENAVT 214
+ + R L + AN + C +S + ++ +
Sbjct: 61 LPGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLY 105
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 31.6 bits (71), Expect = 0.49
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIP-----QVFWY-------KDGQVIENDGVHYRITESNR 184
TQ+ + +++I C++ + W+ K+ +V E G H
Sbjct: 11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGA 70
Query: 185 -------------LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L + ++GEYRC + + V + V
Sbjct: 71 IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEV 116
Score = 28.1 bits (62), Expect = 6.3
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
L + ++ E G Y C+ +A + + + A P+
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA 121
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 30.7 bits (69), Expect = 0.49
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
LT+ + E G Y C +
Sbjct: 87 LTLNKFSKENEGYYFCSVISN 107
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 32.1 bits (73), Expect = 0.50
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 143 VGSDISIPCDVDGYPIP----QVFWYKDGQVIENDGVHYRITESN-------RLHINQAN 191
+ + C V + WY DG + N R + N L + N
Sbjct: 333 ISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQN 392
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219
D EY+C SN TI
Sbjct: 393 WLDGKEYKCKVSNKALPAPIEKTISKAK 420
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable
domain-like beta-sandwich, stalk region, immune system;
2.80A {Ictalurus punctatus}
Length = 137
Score = 30.7 bits (70), Expect = 0.54
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
L I + G Y C G
Sbjct: 78 LNIIGAREDDGGEYFCGEVEG 98
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 30.4 bits (68), Expect = 0.55
Identities = 7/66 (10%), Positives = 16/66 (24%), Gaps = 3/66 (4%)
Query: 238 IVEGR-YCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVVNK 296
++ C+ Y +G G + E + R ++ +
Sbjct: 54 LINSDIVCEQDIYEWTKINGG--SGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLEN 111
Query: 297 WSLRQA 302
A
Sbjct: 112 TQFDAA 117
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 31.9 bits (71), Expect = 0.64
Identities = 11/68 (16%), Positives = 23/68 (33%)
Query: 122 QNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE 181
+N ++ + N+ + +V GS+++I C + +I G I
Sbjct: 196 KNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHI 255
Query: 182 SNRLHINQ 189
N
Sbjct: 256 LNIPVSEN 263
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 30.3 bits (69), Expect = 0.66
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVT 46
+ I V PE G Y C + +
Sbjct: 80 IRISNVTPEDAGTYYCVKFQKGPSEPDTEIQ 110
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 30.0 bits (68), Expect = 0.70
Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 20/92 (21%)
Query: 143 VGSDISIPCD-VDGYPIPQVFWYK----------------DGQVIENDGVHYRITESNR- 184
+ +++ C +FWYK + +
Sbjct: 14 EKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSS 73
Query: 185 --LHINQANATDSGEYRCVASNSYTSDENAVT 214
L I DS Y C Y N +
Sbjct: 74 IGLIITATQIEDSAVYFCAMRGDYGGSGNKLI 105
>2a05_A Cysteine-rich secretory protein-2; alpha helices, 5 disulphide
bonds, 2 domains, signaling protein; NMR {Mus musculus}
Length = 57
Score = 28.3 bits (63), Expect = 0.93
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 225 SCRDLPLFANCKLIVEGRYCQHHYYSQFCCESC 257
SC L +NC+ + C+H C +C
Sbjct: 18 SCDFEDLLSNCESLKTSAGCKHELLKTKCQATC 50
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.9 bits (67), Expect = 0.97
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 28/103 (27%)
Query: 143 VGSDISIPC-------------------DVDGYPIPQVFWYKDGQVIENDGVHY--RITE 181
VGS +++ C G +F Y GQ ++ + RI
Sbjct: 13 VGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQW 72
Query: 182 SNR-------LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ I+ + +D+G + C N + +
Sbjct: 73 VGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 29.6 bits (66), Expect = 1.2
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 21/97 (21%)
Query: 143 VGSDISIPC--DVDGYPIPQVFWYKDGQ------VIENDGV-------HYRITESNR--- 184
G +++ C G + W K+ ++ + + I +
Sbjct: 24 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGF 83
Query: 185 --LHINQANATDSGEYRC-VASNSYTSDENAVTIRVE 218
+ + DSG Y C + S S +V +
Sbjct: 84 FTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 30.3 bits (68), Expect = 1.2
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 18/82 (21%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK--DGQVIE---------NDGVHYRITESNR------- 184
G + C + WY+ + E ++ RI+ +
Sbjct: 14 EGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSY 73
Query: 185 LHINQANATDSGEYRCVASNSY 206
L+I + DS Y C +
Sbjct: 74 LYIKGSQPEDSATYLCARNTGN 95
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 30.4 bits (68), Expect = 1.2
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK---------------DGQVIENDGVHYRITESNR--- 184
G + + C P +FWY D + E+ G H + +S+
Sbjct: 15 EGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFH 74
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L + A +DS Y C + +S
Sbjct: 75 LQKSSAQLSDSALYYCALFLASSS 98
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 16 LTIKRVEPERLGAYTCQAY-NGLGRAVSWT------VTLQALPS 52
++I + P G Y C + G V + ++++A PS
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS 119
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen
bonds, immune system; 1.50A {Homo sapiens} SCOP:
b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A
1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A
3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A*
...
Length = 114
Score = 29.0 bits (66), Expect = 1.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI ++ E + Y CQ Y
Sbjct: 79 LTISSLQAEDVAVYYCQQYY 98
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 30.7 bits (69), Expect = 1.3
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 18/103 (17%)
Query: 144 GSDISIPCDVDGYPIP----QVFWYKDGQVIENDGVHYRITESN-------RLHINQANA 192
+ C V Q+ W+ + + + N L I +
Sbjct: 255 SLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW 314
Query: 193 TDSGEYRCVASN-------SYTSDENAVTIRVEGIFIHPSCRD 228
E++C +N T + ++R +++ P +
Sbjct: 315 MSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEE 357
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.0 bits (65), Expect = 1.4
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWY--KDGQVIE-NDGVHYRITES---NRLHINQANA--- 192
GS++++ D P ++ W K+ +++E N I ES R+++ + N
Sbjct: 17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 193 ------TDSGEYRCVASNSYTSDENAVTIRV 217
D G Y T +E +T+ V
Sbjct: 77 ISNVRKEDKGTYYMRVLRE-TENELKITLEV 106
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.1 bits (65), Expect = 1.5
Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 19/94 (20%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWYK-------------DGQVIENDGVHYRITESNR---- 184
+++ C G+ +W + G E I ++ +
Sbjct: 16 ERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTF 75
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + TD+ Y C + V + +
Sbjct: 76 TVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed
death-1, costimulatory, immune system; 2.10A {Homo
sapiens}
Length = 129
Score = 29.2 bits (66), Expect = 1.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
+++ R G Y C A +
Sbjct: 77 MSVVRARRNDSGTYLCGAISL 97
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 29.6 bits (66), Expect = 1.6
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 22/97 (22%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
LT+ + E G Y C + + + + +++ S
Sbjct: 92 LTLNKFSKENEGYYFCSVIS------NSVMY----------------FSSVVPVLQKVNS 129
Query: 76 ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFG 112
+ T + T C P +V G
Sbjct: 130 TTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTG 166
Score = 28.1 bits (62), Expect = 5.7
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 27/92 (29%)
Query: 143 VGSDISIPCDVDGYPIPQVFWY--KDGQVIE------------NDGVHYRITESNR---- 184
+G + + C+V G W + N S++
Sbjct: 23 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 82
Query: 185 ---------LHINQANATDSGEYRCVASNSYT 207
L +N+ + + G Y C ++
Sbjct: 83 MRDTNNKYVLTLNKFSKENEGYYFCSVISNSV 114
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 29.8 bits (67), Expect = 1.7
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 11/97 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIP----QVFWYKDGQVIENDGVHYRITESN-------RLHI 187
V + + C V Q W+ D + R + N L I
Sbjct: 13 DVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPI 72
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224
+ + E++C +++ TI
Sbjct: 73 MHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKA 109
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single
chain FV, immune system; 2.67A {Homo sapiens}
Length = 143
Score = 29.1 bits (66), Expect = 1.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI +EPE Y CQ +
Sbjct: 72 LTISNLEPEDFAVYYCQQRS 91
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 29.8 bits (67), Expect = 1.8
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 19/90 (21%)
Query: 144 GSDISIPCDVDGYPIPQVFWY--KDGQVIE-----------NDGVHYRITESN------R 184
GS +S+ C V+G P ++WY G+ ++ + V ++ S
Sbjct: 16 GSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFI 75
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVT 214
L + +DSG Y C S S + +
Sbjct: 76 LSSKKLLLSDSGFYLCAWSVSVGAGVPTIY 105
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain;
immunoglobulin, immune system; 1.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Length = 111
Score = 28.6 bits (65), Expect = 1.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
L I VE + + Y CQ N
Sbjct: 77 LIIDPVEADDVATYYCQQTN 96
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.8 bits (67), Expect = 1.9
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK----------------DGQVIENDGVHYRIT------ 180
GS I CD+ + WY V+ G+
Sbjct: 16 TGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGST 75
Query: 181 -ESNRLHINQANATDSGEYRCVASNS 205
++ R+ + DSG Y C +
Sbjct: 76 RKNLRMILRNLIENDSGVYYCATWDQ 101
Score = 28.6 bits (64), Expect = 5.4
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 23/87 (26%)
Query: 143 VGSDISIPCDVDG-YPIPQVFWYKDGQ--------VI-----ENDGVHYRITESNR---- 184
V +++ C + + +FWYK + +I E + R + + +
Sbjct: 150 VRKAVTLNCLYETSWWSYYIFWYK--RLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAK 207
Query: 185 ---LHINQANATDSGEYRCVASNSYTS 208
L I+ DS +Y C S T
Sbjct: 208 SVALTISALQLEDSAKYFCALGESLTR 234
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex,
scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L
3h3p_L 3lhp_L
Length = 146
Score = 29.1 bits (66), Expect = 2.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI +EPE Y CQ Y
Sbjct: 88 LTISSLEPEDFAIYYCQQYR 107
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI ++PE + Y C YN
Sbjct: 211 LTISSLQPEDVATYFCYQYN 230
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 28.5 bits (64), Expect = 2.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
+ I G Y C A +
Sbjct: 75 MNILDTRRNDSGIYLCGAIS 94
Score = 27.0 bits (60), Expect = 7.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 185 LHINQANATDSGEYRCVASNSY 206
++I DSG Y C A + +
Sbjct: 75 MNILDTRRNDSGIYLCGAISLH 96
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 28.7 bits (65), Expect = 2.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
++I + P G Y C +
Sbjct: 81 ISISNITPADAGTYYCVKFR 100
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 29.2 bits (65), Expect = 2.7
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 19/86 (22%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK----------------DGQVIENDGVHYRITESNR-- 184
G+ + + C P +FWY D V +G ++S+
Sbjct: 23 EGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSF 82
Query: 185 -LHINQANATDSGEYRCVASNSYTSD 209
L + +DS Y C S T
Sbjct: 83 HLRKASVHWSDSAVYFCAVSAKGTGS 108
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 29.3 bits (66), Expect = 2.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
L I RVE E LG Y C +
Sbjct: 111 LRISRVEAEDLGVYYCFQASL 131
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 29.8 bits (68), Expect = 2.8
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 412 GSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK--PLIVS------- 462
GSSIMP K NP E + A +V+G V + V K PL +
Sbjct: 279 GSSIMPQKKNPDILELIRAKAGRVLGAFVGL----------SAVVKGLPLAYNKDLQEDK 328
Query: 463 -NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTAL 507
+L ++ DS + G+ E + R L T L
Sbjct: 329 EPLLDALATYRDSLRLLAA-LLPGLKWRRERMWRAAEGGYTLATEL 373
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope
proteins, structural genomics, antibody epito
flavivirus, niaid; 2.50A {Mus musculus}
Length = 126
Score = 28.3 bits (64), Expect = 2.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI VE + Y CQ N
Sbjct: 77 LTIDSVETDDAATYYCQQNN 96
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 28.3 bits (64), Expect = 2.9
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 10/36 (27%)
Query: 200 CVASNSYT----------SDENAVTIRVEGIFIHPS 225
C + S S E +++ +F +
Sbjct: 43 CGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSK 78
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 28.5 bits (64), Expect = 3.1
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 16/77 (20%)
Query: 143 VGSDISIPCDVDGYPIPQVFWY--KDGQ----VIENDGVHYRITESNR-----LHINQAN 191
S + C + + W+ + Q ++ +G RI ++ L I
Sbjct: 31 RSSMVKFHCYTNHSGA--LTWFRKRGSQQPQELVSEEG---RIVQTQNGSVYTLTIQNIQ 85
Query: 192 ATDSGEYRCVASNSYTS 208
D+G Y C +
Sbjct: 86 YEDNGIYFCKQKCDSAN 102
Score = 27.3 bits (61), Expect = 7.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI+ ++ E G Y C+
Sbjct: 79 LTIQNIQYEDNGIYFCKQKC 98
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.4 bits (66), Expect = 3.2
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 65 TILSSAFPSESASPVVTQTTTTTTEATSPHVYAAL--THCVPWSNVCLFGARSGYLKETQ 122
T+ SS+ +++ V + T + C P G G +
Sbjct: 185 TVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR--- 241
Query: 123 NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYRIT 180
+V ++ + +S+ C V G+ P V W +GQ N +
Sbjct: 242 ------EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVL 295
Query: 181 ESN-------RLHINQANATDSGEYRCVASN 204
+S+ +L ++++ + C +
Sbjct: 296 DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH 326
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 29.5 bits (67), Expect = 3.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 412 GSSIMPGKVNPTQCE 426
GSS+MP K NP E
Sbjct: 276 GSSLMPQKKNPDALE 290
>1qex_A Protein (bacteriophage T4 gene product 9 (GP9)); baseplate,
oligomerization protein; HET: EPE; 2.30A {Enterobacteria
phage T4} SCOP: b.32.1.1 PDB: 1pdp_A* 1s2e_A* 1tja_C
1zku_A*
Length = 288
Score = 29.1 bits (64), Expect = 3.3
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 50 LPSEKVADPN-AIDYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNV 108
+ ++ D I+ +S P + + + TSP+ L ++
Sbjct: 98 IERGELGDCVEFINSNGSISVTNPLTIQAIDSIKGVSGNLVVTSPYSKVTLRCISSDNS- 156
Query: 109 CLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
+ Y E+ G P + + T DI + Y + ++
Sbjct: 157 ---TSVWNYSIESMFGQKESPAEGTWNIST---SGSVDIPLF-HRTEYNMAKLLVTCQS- 208
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216
DG + E N L + S EY + + T ++ I
Sbjct: 209 ---VDGRKIKTAEINILVDTVNSEVISSEYAVMRVGNETEEDEIANIA 253
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 28.8 bits (64), Expect = 3.4
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 19/87 (21%)
Query: 223 HPSCRDLPLFA--NCK---------LIVEGR-YCQHHYYSQFC--CESCTRAGQLPSYGP 268
H C F C+ + G +C+H + + +G G
Sbjct: 94 HLKC-----FTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGG 148
Query: 269 HIKRAVEAEAAAADKKRRSRRSLSVVN 295
+ E + R ++ +
Sbjct: 149 DVMVVGEPTLMGGEFGDEDERLITRLE 175
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 13/45 (28%)
Query: 16 LTIKRVEPERLGAYTCQAYNG------------LGRAVSW-TVTL 47
LTI ++PE Y CQ + R V+ +V +
Sbjct: 96 LTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFI 140
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 29.3 bits (65), Expect = 3.6
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 144 GSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYRITESNR-------LHINQANATD 194
I + C V GY P Q+ W +DGQV++ D T+ L ++Q +
Sbjct: 24 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS 83
Query: 195 SGEYRC-VASNSYTSDENAVTIR------VEGIFIHPSCRDL 229
Y C V +T +++ V PS DL
Sbjct: 84 DRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDL 125
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 27.1 bits (60), Expect = 3.8
Identities = 4/20 (20%), Positives = 7/20 (35%), Gaps = 2/20 (10%)
Query: 243 YCQHHYYSQF--CCESCTRA 260
Y+ +F C C+
Sbjct: 5 SSGKDYWGKFGEFCHGCSLL 24
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 28.2 bits (63), Expect = 4.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
+ I G Y C A +
Sbjct: 85 MNILDTRRNDSGIYLCGAIS 104
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 29.1 bits (66), Expect = 4.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 412 GSSIMPGKVNPTQCE 426
G+S+MP K NP E
Sbjct: 282 GASLMPQKKNPDSLE 296
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 28.5 bits (63), Expect = 4.4
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 23/87 (26%)
Query: 143 VGSDISIPCDVDGYP--IPQVFWYK---------------DGQVIENDGVHYRITESNR- 184
G + ++ C Y I + WY+ + + + + + S +
Sbjct: 15 EGENATMNCS---YKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKS 71
Query: 185 --LHINQANATDSGEYRCVASNSYTSD 209
L I + A D+ Y C + +
Sbjct: 72 SSLLITASRAADTASYFCATDTTSGTY 98
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 28.8 bits (65), Expect = 4.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
TI+ + E + Y C +
Sbjct: 95 FTIENMLSEDVADYYCLQSDN 115
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.5 bits (61), Expect = 4.5
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 143 VGSDISIPC---DVDGYPIPQVFWYK-------------DGQVIENDGVHYRITESNR-- 184
G+ +SI C + +W + +G V +T
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
++I Q + DSG Y+C + V++ V
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein
hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 27.4 bits (62), Expect = 4.8
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI V+ E Y C
Sbjct: 73 LTISSVQAEDFADYHCGQTY 92
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant
staphylococcus aureus, oxidor thioredoxin fold,
structural genomics, PSI-2; HET: MSE; 1.50A
{Staphylococcus aureus subsp}
Length = 112
Score = 27.4 bits (61), Expect = 5.0
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 159 PQVFWYKDGQVIENDGVHYRITESN 183
PQ F++ +G+++ N H I S+
Sbjct: 83 PQAFYFVNGEMVWNRD-HGDINVSS 106
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 28.5 bits (64), Expect = 5.0
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP 58
N LT+ ++ + Y C + G + T + + A P
Sbjct: 66 NTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAP 112
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP:
b.1.1.1 PDB: 3iy6_A
Length = 111
Score = 27.5 bits (62), Expect = 5.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI V+ E L Y CQ Y+
Sbjct: 76 LTISNVQSEDLADYFCQQYS 95
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.3 bits (63), Expect = 5.1
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 17/84 (20%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK--DGQVIEN--DGVHYRITESNR-------------L 185
G+ + I C +FWY+ G+ V + E R L
Sbjct: 13 EGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYL 72
Query: 186 HINQANATDSGEYRCVASNSYTSD 209
+ + DS Y C S S
Sbjct: 73 LLKELQMKDSASYLCAVQASGGSY 96
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 28.3 bits (64), Expect = 5.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
LTI VE + Y CQ
Sbjct: 72 LTIDPVEADDTAIYFCQQSWN 92
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 28.3 bits (64), Expect = 5.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
L+I VE E G Y CQ N
Sbjct: 73 LSINSVETEDFGMYFCQQSNS 93
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.4 bits (61), Expect = 5.4
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 19/94 (20%)
Query: 143 VGSDISIPCDVD-GYPIPQVFWYK-------------DGQVIENDGVHYRITESNR---- 184
+++ C G+ + +W + D I ++ R
Sbjct: 15 EQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIF 74
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + +D+G Y C + VT+ +
Sbjct: 75 TVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein
family; HET: BMA; 1.60A {Salmonella typhimurium} PDB:
2afa_A 2rgk_A*
Length = 421
Score = 28.6 bits (63), Expect = 5.5
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 8/102 (7%)
Query: 101 HCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ 160
+ W + L + + +L+ + T DG
Sbjct: 248 AWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAW--------APDGADGFV 299
Query: 161 VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
DG+ I + V + I E+ TD +Y
Sbjct: 300 YSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWY 341
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.2 bits (61), Expect = 5.8
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 161 VFWYK-------------DGQVIENDGVHYRITESNR----LHINQANATDSGEYRCVAS 203
V W++ EN + LHI A DSG Y C A
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE 91
Query: 204 NSYTSDE 210
S S +
Sbjct: 92 ASSGSWQ 98
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 28.2 bits (63), Expect = 5.9
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 30/126 (23%)
Query: 101 HCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ 160
+ ++ A + Q+ L G + C +
Sbjct: 111 SVLGSADDAKKDAAKKDGQVRQSPQSLTV------------WEGETAILNCSYENSAFDY 158
Query: 161 VFWYK-----------DGQVIENDGVHYRITESNR-------LHINQANATDSGEYRCVA 202
WY+ + + R T LHI + DS Y C A
Sbjct: 159 FPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA 218
Query: 203 SNSYTS 208
++
Sbjct: 219 IDTNAY 224
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen);
2.40A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 27.1 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 16 LTIKRVEPERLGAYTCQAYN 35
LTI +EPE Y CQ +N
Sbjct: 73 LTISSLEPEDFAMYICQQHN 92
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 27.9 bits (62), Expect = 6.2
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 18/82 (21%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK---------------DGQVIENDGVHYRITESNR--- 184
G + C + WY E+ + +
Sbjct: 14 EGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFS 73
Query: 185 LHINQANATDSGEYRCVASNSY 206
LHI + DS Y C AS++
Sbjct: 74 LHIADSQPGDSATYFCAASDNR 95
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;
anti-CD3epsilon, T-cell receptor, signalling, IMMU;
2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B
3ldb_B*
Length = 213
Score = 28.0 bits (63), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
TI +E E +G+Y CQ Y
Sbjct: 73 FTISSLESEDIGSYYCQQYYN 93
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 28.0 bits (62), Expect = 6.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 225 SCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCT 258
C F+NCK + + CQ + + C SC
Sbjct: 171 PCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCF 204
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 27.9 bits (62), Expect = 6.8
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 143 VGSDISIPCDVDGYPIP----QVFWYKDGQVIENDGVHYRITESN-------RLHINQAN 191
+ + C V + WY DG + N R + N L + +
Sbjct: 17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 76
Query: 192 ATDSGEYRCVASNS 205
+ EY+C SN
Sbjct: 77 WLNGKEYKCKVSNK 90
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.9 bits (63), Expect = 7.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 16 LTIKRVEPERLGAYTCQAYNG 36
LTI +E Y CQ+
Sbjct: 73 LTISDLECADAATYYCQSTYE 93
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 27.9 bits (62), Expect = 7.2
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 360 FEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGK 419
+AL L+ + A ++ G + L+ P +PG
Sbjct: 55 LKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVP---YLPGV 111
Query: 420 VNPTQCEALTMVAAQVMGNHVAVTIGGSN 448
+ PT+ E + + A G
Sbjct: 112 LTPTEVERALALGLSALKFFPAEPFQGVR 140
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 27.4 bits (61), Expect = 7.3
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 223 HPSCR-----DLPLFANCKLIVEGR-YCQHHYYSQFC--CESCTRA 260
H D L ++V + C+ Y C+ C A
Sbjct: 27 HLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNA 72
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 26.6 bits (59), Expect = 8.1
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 121 TQNGGYLVPVKVNITLE-TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI 179
+Q P I+ E V +GS ++ C + ++ + ND
Sbjct: 2 SQEEDLPRPS---ISAEPGTVIPLGSHVTFVCRGP-VGVQTFRLERESRSTYNDTEDVSQ 57
Query: 180 TES----NRLHINQANATDSGEYRCVASNSYTSDE--NAVTIRVEG 219
R I+ + ++G YRC+ E + + + V+
Sbjct: 58 ASPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLELLVKE 103
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.7 bits (62), Expect = 8.3
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 23/105 (21%)
Query: 16 LTIKRVEPERLGAYTCQAYNG---------------LGRAVSW-TVTLQALPSEKVADPN 59
LTI + + Y CQ+++G LG+ + +VTL PS + N
Sbjct: 72 LTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFP-PSSEELKTN 130
Query: 60 AIDYGTILSSAFPSESA------SPVVTQTTTTTTEATSPHVYAA 98
+++ +P++ A +TQ TT + S Y A
Sbjct: 131 QATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMA 175
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 27.5 bits (62), Expect = 9.0
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 10/36 (27%)
Query: 200 CVASNSYT----------SDENAVTIRVEGIFIHPS 225
C + S S E +++ +F +
Sbjct: 58 CGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSK 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,443,987
Number of extensions: 508480
Number of successful extensions: 2489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2142
Number of HSP's successfully gapped: 791
Length of query: 558
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 460
Effective length of database: 3,965,535
Effective search space: 1824146100
Effective search space used: 1824146100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)