Query psy10161
Match_columns 197
No_of_seqs 126 out of 931
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:25:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 2.3E-42 5E-47 302.1 7.9 136 1-166 128-266 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 1.6E-40 3.5E-45 286.3 4.1 133 1-166 109-250 (250)
3 PTZ00251 fatty acid elongase; 100.0 1.1E-38 2.3E-43 279.3 5.1 132 1-166 130-270 (272)
4 KOG3072|consensus 100.0 4.9E-35 1.1E-39 255.5 5.5 131 1-162 137-269 (282)
5 PRK00753 psbL photosystem II r 26.3 1.3E+02 0.0029 19.2 3.5 26 130-155 13-38 (39)
6 KOG1108|consensus 24.9 53 0.0012 29.1 2.1 49 147-195 140-206 (281)
7 CHL00038 psbL photosystem II p 22.6 1.7E+02 0.0038 18.5 3.5 26 130-155 12-37 (38)
8 PF04689 S1FA: DNA binding pro 22.3 1.1E+02 0.0024 21.8 2.9 23 142-164 21-43 (69)
9 PRK11677 hypothetical protein; 21.4 1.6E+02 0.0035 23.6 4.1 40 147-188 12-51 (134)
10 PF04689 S1FA: DNA binding pro 21.0 2.3E+02 0.005 20.2 4.3 16 154-170 37-52 (69)
11 PF03672 UPF0154: Uncharacteri 20.3 3.2E+02 0.0069 19.3 4.9 17 148-164 15-31 (64)
No 1
>KOG3071|consensus
Probab=100.00 E-value=2.3e-42 Score=302.13 Aligned_cols=136 Identities=39% Similarity=0.630 Sum_probs=123.1
Q ss_pred CEEEEeeCCCceeEEeeechhhHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccchhhhh
Q psy10161 1 IFFILRKKYNQVSVLHLYHHVSTLFICWWGSRYYPGGLALFPILLNSSVHIIMYTYYLIANFGPKWQALVAPIKPYITII 80 (197)
Q Consensus 1 vF~VLRKK~~qlsfLHvYHH~~v~l~~w~~~~~~~~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~~~K~~IT~l 80 (197)
+|+|||||.||+||||+|||++|++.||.++++.++|+.++.+.+|++||++||+||+++|+|+++++++ |||+++|.+
T Consensus 128 vFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~l-WWkky~t~v 206 (274)
T KOG3071|consen 128 VFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYL-WWKKYITIV 206 (274)
T ss_pred eeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccc-hHHHHHHHH
Confidence 6999999999999999999999999999999998889999999999999999999999999999999999 999999999
Q ss_pred hhhhhhhcccccccccccccCCCccccccccceeeeeE-eEe-cccCCCCCCccHH-HHHHHHHHHHHHHHHHHHHhHHh
Q psy10161 81 QMVSSFTFTLCRNHEISRRLSHDPTICSQAQFTLLILM-SFV-LVSPYYCKDGPQT-LAYIFLPNLVLVYYLFYQFFKRT 157 (197)
Q Consensus 81 QIvQmf~~~~~~~~~i~~~~~~~~~~~~~~~Fv~~~~~-~~~-~~~~~~C~~~~~~-~~~~~~~~~~s~l~LF~~Fy~~s 157 (197)
|++| |++..+| .+. ++. +|| +.|.+ +++.+.+..++|+.||.|||+++
T Consensus 207 Qlvq---------------------------f~~~~~~~~~~~~~~-~~c-~~~~~~~~~~~~~~~~~~l~LF~nFY~~t 257 (274)
T KOG3071|consen 207 QLVQ---------------------------FLILFVHTLYVHLFK-PGC-CFGIGAWAFNGSVINVSFLLLFSNFYIKT 257 (274)
T ss_pred HHHH---------------------------HHHHHHHHhheeeec-CCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7776777 444 443 578 78877 88888899999999999999999
Q ss_pred cCCCCCCCC
Q psy10161 158 YLGTDHPNK 166 (197)
Q Consensus 158 Y~~~~~~~~ 166 (197)
|.++++++.
T Consensus 258 Y~k~~~~~~ 266 (274)
T KOG3071|consen 258 YKKPKKKKA 266 (274)
T ss_pred hccccccch
Confidence 998665543
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.6e-40 Score=286.29 Aligned_cols=133 Identities=39% Similarity=0.699 Sum_probs=113.8
Q ss_pred CEEEEeeCCCceeEEeeechhhHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHHHHHHhCCc-cccccccccchhhh
Q psy10161 1 IFFILRKKYNQVSVLHLYHHVSTLFICWWGSRYYPGGLALFPILLNSSVHIIMYTYYLIANFGPK-WQALVAPIKPYITI 79 (197)
Q Consensus 1 vF~VLRKK~~qlsfLHvYHH~~v~l~~w~~~~~~~~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~-~~~~~~~~K~~IT~ 79 (197)
+|+||||| |+||||||||++|++++|.++++.++|+.++++++|++||++||+||+++|+|.| .|. |||++||.
T Consensus 109 vflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~---~~k~~IT~ 183 (250)
T PF01151_consen 109 VFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLSALGIRKVPR---WWKKYITS 183 (250)
T ss_pred HHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHHhcccccchh---HHHHHHhH
Confidence 57899998 6999999999999999999999987788889999999999999999999999976 433 89999999
Q ss_pred hhhhhhhhcccccccccccccCCCccccccccceeeeeE-eEe----cccCCCCCCcc---HHHHHHHHHHHHHHHHHHH
Q psy10161 80 IQMVSSFTFTLCRNHEISRRLSHDPTICSQAQFTLLILM-SFV----LVSPYYCKDGP---QTLAYIFLPNLVLVYYLFY 151 (197)
Q Consensus 80 lQIvQmf~~~~~~~~~i~~~~~~~~~~~~~~~Fv~~~~~-~~~----~~~~~~C~~~~---~~~~~~~~~~~~s~l~LF~ 151 (197)
+||+| |++++.+ .+. ...+.+| +.+ .....++.++++++++||.
T Consensus 184 ~Qi~Q---------------------------F~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~~~~~~~s~l~LF~ 235 (250)
T PF01151_consen 184 LQIVQ---------------------------FVIGIVHTVYALYYYFFPGGDC-DTSGYPKFNAILGLVYYVSYLYLFI 235 (250)
T ss_pred Hhhhh---------------------------hHHHHHHHHHHhheeccCCCCC-CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999 5555443 221 1223689 655 8889999999999999999
Q ss_pred HHhHHhcCCCCCCCC
Q psy10161 152 QFFKRTYLGTDHPNK 166 (197)
Q Consensus 152 ~Fy~~sY~~~~~~~~ 166 (197)
|||+++|.++++++|
T Consensus 236 ~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 236 NFYIKSYIKKKKKKK 250 (250)
T ss_pred HHHHHHhCcCCCCCC
Confidence 999999998887764
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1.1e-38 Score=279.34 Aligned_cols=132 Identities=27% Similarity=0.526 Sum_probs=105.7
Q ss_pred CEEEEeeCCCceeEEeeechhhHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHHHHHHHHhCCccccccccccchhhh
Q psy10161 1 IFFILRKKYNQVSVLHLYHHVSTLFICWWGSRYYPGGLA-LFPILLNSSVHIIMYTYYLIANFGPKWQALVAPIKPYITI 79 (197)
Q Consensus 1 vF~VLRKK~~qlsfLHvYHH~~v~l~~w~~~~~~~~~~~-~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~~~K~~IT~ 79 (197)
+|+||||| |+||||||||++|++++|.++. ++++. ++++++|++||++||+||+++|+|++.+ ++|||++||.
T Consensus 130 vF~VLRKK--qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~--~~~~kk~IT~ 203 (272)
T PTZ00251 130 FFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICAAAMNYFVHSIMYFYFALSEAGFKKL--VKPFAMYITL 203 (272)
T ss_pred hhhhhcCC--CchHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--hhHHHHHHHH
Confidence 68999998 6999999999999999999873 33333 3469999999999999999999999732 2269999999
Q ss_pred hhhhhhhhcccccccccccccCCCccccccccceeeeeE-eEecc------cCCCCCCccH-HHHHHHHHHHHHHHHHHH
Q psy10161 80 IQMVSSFTFTLCRNHEISRRLSHDPTICSQAQFTLLILM-SFVLV------SPYYCKDGPQ-TLAYIFLPNLVLVYYLFY 151 (197)
Q Consensus 80 lQIvQmf~~~~~~~~~i~~~~~~~~~~~~~~~Fv~~~~~-~~~~~------~~~~C~~~~~-~~~~~~~~~~~s~l~LF~ 151 (197)
+||+| |++++++ .+.+. .+.+| +++. ...+.+.+++++|++||.
T Consensus 204 lQi~Q---------------------------fv~~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~~~~~s~l~LF~ 255 (272)
T PTZ00251 204 LQITQ---------------------------MVGGLFVSGYVIVQKLTKGDPKGC-SGTTMATARGQLMIYIFNFYLFS 255 (272)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHHhhcccCCCCCC-CCchHHHHHHHHHHHHHHHHHHH
Confidence 99999 5544444 22211 12579 7776 777788889999999999
Q ss_pred HHhHHhcCCCCCCCC
Q psy10161 152 QFFKRTYLGTDHPNK 166 (197)
Q Consensus 152 ~Fy~~sY~~~~~~~~ 166 (197)
|||+++|++++++++
T Consensus 256 ~Fy~~~Y~~~~~~~~ 270 (272)
T PTZ00251 256 EMFVKGYVLPRKAKA 270 (272)
T ss_pred HHHHHHhCCCCCCCC
Confidence 999999998766553
No 4
>KOG3072|consensus
Probab=100.00 E-value=4.9e-35 Score=255.50 Aligned_cols=131 Identities=25% Similarity=0.420 Sum_probs=109.9
Q ss_pred CEEEEeeCCCceeEEeeechhhHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccchhhhh
Q psy10161 1 IFFILRKKYNQVSVLHLYHHVSTLFICWWGSRYYPGGLALFPILLNSSVHIIMYTYYLIANFGPKWQALVAPIKPYITII 80 (197)
Q Consensus 1 vF~VLRKK~~qlsfLHvYHH~~v~l~~w~~~~~~~~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~~~K~~IT~l 80 (197)
+|+|||||| ++|||||||+.++++.|.++.... +...|++.||.+||++||+||+++|+|+|+|+.+ .+.||.+
T Consensus 137 ~FiVLRKrP--liFlHWYHHi~~~iy~~~~y~~~~-a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~Pk~v---am~iTtl 210 (282)
T KOG3072|consen 137 IFIVLRKRP--LIFLHWYHHILVLIYAWHSYIEKV-AWGRWFIWMNYLVHAFMYSYYALRSLGIRLPKSV---AMAITTL 210 (282)
T ss_pred eEEEeccCc--cEEEechhhheeeeeeeeecccCC-cCceEEEEEehhHHHHHHHHHHHHHcCCCCChHH---HHHHHHH
Confidence 599999999 999999999999999999987544 4567999999999999999999999999999854 8999999
Q ss_pred hhhhhhhcccccccccccccCCCccccccccceeeeeE-eEec-ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhHHhc
Q psy10161 81 QMVSSFTFTLCRNHEISRRLSHDPTICSQAQFTLLILM-SFVL-VSPYYCKDGPQTLAYIFLPNLVLVYYLFYQFFKRTY 158 (197)
Q Consensus 81 QIvQmf~~~~~~~~~i~~~~~~~~~~~~~~~Fv~~~~~-~~~~-~~~~~C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~sY 158 (197)
||+||+++. ++ ..+ .+.. ..+.+| +.+.....++.+++++|++||.|||.++|
T Consensus 211 Qi~Qm~i~~----------------------~i--~~~v~~~~~~~~~~c-~~s~~~~~l~~~my~syfvLf~~Ff~~aY 265 (282)
T KOG3072|consen 211 QIVQMVIGC----------------------YI--GTHVYYVKHTHQLLC-QQSYKNLSLCFLMYISYFVLFANFFYQAY 265 (282)
T ss_pred HHHHHHHHH----------------------he--eeEEEEEEecCCeee-eeeccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999966542 22 223 2222 222239 88888889999999999999999999999
Q ss_pred CCCC
Q psy10161 159 LGTD 162 (197)
Q Consensus 159 ~~~~ 162 (197)
+++.
T Consensus 266 i~~g 269 (282)
T KOG3072|consen 266 IKKG 269 (282)
T ss_pred hhhc
Confidence 9874
No 5
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=26.25 E-value=1.3e+02 Score=19.15 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHhH
Q psy10161 130 DGPQTLAYIFLPNLVLVYYLFYQFFK 155 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 155 (197)
+-.+.-.++++.......+||.++|.
T Consensus 13 ELNRTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred eechhhHHHHHHHHHHHHHHHHhhcc
Confidence 34577788888888889999999874
No 6
>KOG1108|consensus
Probab=24.91 E-value=53 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=28.2
Q ss_pred HHHHHHHhHHhcCC-----------CCCCCCCCCcchhHHHHHHHHHHHhhhc-------CCCcccc
Q psy10161 147 YYLFYQFFKRTYLG-----------TDHPNKYPNKTNKKLQQLQEQYQRQKQN-------GGQWSQK 195 (197)
Q Consensus 147 l~LF~~Fy~~sY~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 195 (197)
+.=...||-|.|+- +..++++-.+.-.++++.+|.-+.|+++ .-.|||.
T Consensus 140 i~dWrsFY~k~Y~~vGrv~gryYds~G~pT~~lt~v~a~~era~e~~k~q~~e~a~fp~CNsewsq~ 206 (281)
T KOG1108|consen 140 IADWRSFYQKDYVYVGRVIGRYYDSKGAPTPYLTKVLALLERAREAKKQQEEERARFPPCNSEWSQE 206 (281)
T ss_pred hhhhhhhhhcccceeeEEeeeeecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhcc
Confidence 34578999999973 4444544444444444444444444443 5568775
No 7
>CHL00038 psbL photosystem II protein L
Probab=22.58 E-value=1.7e+02 Score=18.54 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHhH
Q psy10161 130 DGPQTLAYIFLPNLVLVYYLFYQFFK 155 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 155 (197)
+-.+.-.++++.......+||.++|.
T Consensus 12 ELNRTSLy~GLLlifvl~vlfssyff 37 (38)
T CHL00038 12 ELNRTSLYWGLLLIFVLAVLFSNYFF 37 (38)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 34577788888888888999999874
No 8
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.30 E-value=1.1e+02 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhHHhcCCCCCC
Q psy10161 142 NLVLVYYLFYQFFKRTYLGTDHP 164 (197)
Q Consensus 142 ~~~s~l~LF~~Fy~~sY~~~~~~ 164 (197)
-.+..+.|-.||-.-.|-++.-+
T Consensus 21 ~g~ll~flvGnyvlY~Yaqk~lp 43 (69)
T PF04689_consen 21 AGLLLVFLVGNYVLYVYAQKTLP 43 (69)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 33445567778877777654433
No 9
>PRK11677 hypothetical protein; Provisional
Probab=21.42 E-value=1.6e+02 Score=23.56 Aligned_cols=40 Identities=5% Similarity=0.050 Sum_probs=19.5
Q ss_pred HHHHHHHhHHhcCCCCCCCCCCCcchhHHHHHHHHHHHhhhc
Q psy10161 147 YYLFYQFFKRTYLGTDHPNKYPNKTNKKLQQLQEQYQRQKQN 188 (197)
Q Consensus 147 l~LF~~Fy~~sY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (197)
+.+.+=|+.-++..++. +..++..+.+++.+++.++.|++
T Consensus 12 vG~iiG~~~~R~~~~~~--~~q~~le~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 12 VGIIIGAVAMRFGNRKL--RQQQALQYELEKNKAELEEYRQE 51 (134)
T ss_pred HHHHHHHHHHhhccchh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544332 23344455666666555555543
No 10
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.97 E-value=2.3e+02 Score=20.20 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=7.3
Q ss_pred hHHhcCCCCCCCCCCCc
Q psy10161 154 FKRTYLGTDHPNKYPNK 170 (197)
Q Consensus 154 y~~sY~~~~~~~~~~~~ 170 (197)
|.+.-+-+ +++|...|
T Consensus 37 Yaqk~lpp-~kkkpvsk 52 (69)
T PF04689_consen 37 YAQKTLPP-KKKKPVSK 52 (69)
T ss_pred HHhhcCCC-CCCCcccH
Confidence 55555544 44444333
No 11
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.27 E-value=3.2e+02 Score=19.27 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=11.8
Q ss_pred HHHHHHhHHhcCCCCCC
Q psy10161 148 YLFYQFFKRTYLGTDHP 164 (197)
Q Consensus 148 ~LF~~Fy~~sY~~~~~~ 164 (197)
+.+...|.+.|+++..|
T Consensus 15 ff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 15 FFIARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 34578888888865544
Done!