Query psy10161
Match_columns 197
No_of_seqs 126 out of 931
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:25:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 34.7 76 0.0026 19.1 4.3 26 130-155 11-36 (37)
2 1sg7_A Putative cation transpo 20.2 91 0.0031 22.7 3.3 47 150-196 45-96 (96)
3 1ity_A TRF1; helix-turn-helix, 13.3 52 0.0018 21.6 0.5 28 167-194 5-35 (69)
4 1z8u_A Alpha-hemoglobin stabil 12.5 2.2E+02 0.0076 20.6 3.7 13 149-161 43-55 (102)
5 4h33_A LMO2059 protein; bilaye 12.3 2.9E+02 0.0098 20.3 4.6 27 133-159 71-97 (137)
6 2yus_A SWI/SNF-related matrix- 12.1 84 0.0029 21.5 1.4 29 166-194 12-42 (79)
7 4dkl_A MU-type opioid receptor 10.7 1.6E+02 0.0054 24.5 2.9 15 42-56 427-441 (464)
8 2gsv_A Hypothetical protein YV 10.6 1.6E+02 0.0054 20.3 2.3 20 171-190 52-71 (80)
9 3rvy_A ION transport protein; 10.6 1.9E+02 0.0064 23.5 3.2 18 143-160 224-241 (285)
10 2koe_A Human cannabinoid recep 10.3 21 0.00071 20.4 -2.1 17 40-56 7-23 (40)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=34.67 E-value=76 Score=19.13 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=21.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHhH
Q psy10161 130 DGPQTLAYIFLPNLVLVYYLFYQFFK 155 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 155 (197)
+-.+.-.++++.......+||.++|.
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhcc
Confidence 44688888898888889999999885
No 2
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=20.15 E-value=91 Score=22.69 Aligned_cols=47 Identities=11% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHhHHhcCCCCCCCCCCCcchhHHHHHHHHHHHhhhc-----CCCccccC
Q psy10161 150 FYQFFKRTYLGTDHPNKYPNKTNKKLQQLQEQYQRQKQN-----GGQWSQKS 196 (197)
Q Consensus 150 F~~Fy~~sY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 196 (197)
|..+|-+++-.-+.+.+........-...|-+...-|++ .|.|..|+
T Consensus 45 y~kAfNsA~eeY~d~~~r~~~~~rEe~AhrvAWaAVK~~Y~K~~~g~W~~k~ 96 (96)
T 1sg7_A 45 YKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEYAKGDDDKWHKKS 96 (96)
T ss_dssp HHHHHHHHHHHCCSSSSSSCHHHHHHHHHHHHHHHHHHHEEECSSSCEEECC
T ss_pred HHHHHHHHHHHhcChhhccccchhHHHHHHHHHHHHHHHheeCCCCceeeCc
Confidence 445555555433333333334444444455555443332 49998774
No 3
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=13.25 E-value=52 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=15.0
Q ss_pred CCCcchhHHHHHHHHH--HHhhhcC-CCccc
Q psy10161 167 YPNKTNKKLQQLQEQY--QRQKQNG-GQWSQ 194 (197)
Q Consensus 167 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 194 (197)
.+.+..+++..++++. +--++-| |.|+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~ 35 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSK 35 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHH
Confidence 3444556666555544 2233346 68975
No 4
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=12.51 E-value=2.2e+02 Score=20.63 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=8.3
Q ss_pred HHHHHhHHhcCCC
Q psy10161 149 LFYQFFKRTYLGT 161 (197)
Q Consensus 149 LF~~Fy~~sY~~~ 161 (197)
=..|||++-|.++
T Consensus 43 DWvnfYinyy~~~ 55 (102)
T 1z8u_A 43 DWMNFYINYYRQQ 55 (102)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777543
No 5
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=12.26 E-value=2.9e+02 Score=20.25 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhcC
Q psy10161 133 QTLAYIFLPNLVLVYYLFYQFFKRTYL 159 (197)
Q Consensus 133 ~~~~~~~~~~~~s~l~LF~~Fy~~sY~ 159 (197)
+....+..+..+.++.++..-....+.
T Consensus 71 r~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 71 RILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555444443
No 6
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=12.15 E-value=84 Score=21.50 Aligned_cols=29 Identities=3% Similarity=0.178 Sum_probs=16.9
Q ss_pred CCCCcchhHHHHHHHHH--HHhhhcCCCccc
Q psy10161 166 KYPNKTNKKLQQLQEQY--QRQKQNGGQWSQ 194 (197)
Q Consensus 166 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 194 (197)
+.......++.+++++. +-.++-|+.|..
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~ 42 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYKDDWNK 42 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSSSCHHH
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhCCCHHH
Confidence 34444456676666554 444555788864
No 7
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=10.74 E-value=1.6e+02 Score=24.47 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy10161 42 PILLNSSVHIIMYTY 56 (197)
Q Consensus 42 ~~~lNs~VH~iMY~Y 56 (197)
.+.+|+.++|+.|++
T Consensus 427 L~~~ns~~NPiIY~~ 441 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAF 441 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHH
Confidence 578999999999987
No 8
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=10.61 E-value=1.6e+02 Score=20.29 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHhhhcCC
Q psy10161 171 TNKKLQQLQEQYQRQKQNGG 190 (197)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ 190 (197)
--|..|-+.|+|++-|++..
T Consensus 52 vlkRiqHLdEAY~KVk~e~s 71 (80)
T 2gsv_A 52 VLKRIQHLDEAYNKVKRGES 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 35788999999999998754
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=10.58 E-value=1.9e+02 Score=23.46 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHHhcCC
Q psy10161 143 LVLVYYLFYQFFKRTYLG 160 (197)
Q Consensus 143 ~~s~l~LF~~Fy~~sY~~ 160 (197)
...++-||.-.-..++..
T Consensus 224 ~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 224 TFVMINLVVAICVDAMAI 241 (285)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555565555555544
No 10
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=10.30 E-value=21 Score=20.43 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10161 40 LFPILLNSSVHIIMYTY 56 (197)
Q Consensus 40 ~~~~~lNs~VH~iMY~Y 56 (197)
.+.+.+|+.+.|+.|++
T Consensus 7 ~~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 7 SMLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677899999998875
Done!