Query psy10161
Match_columns 197
No_of_seqs 126 out of 931
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 19:25:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 39.5 27 0.002 19.6 4.3 26 130-155 11-36 (37)
2 d1sg7a1 a.239.1.1 (A:22-96) Pu 15.5 67 0.0049 20.6 3.3 9 188-196 67-75 (75)
3 d2gycf2 d.100.1.1 (F:1-58) Rib 15.0 38 0.0028 20.6 1.9 23 154-176 25-47 (58)
4 d2gsva1 a.23.7.1 (A:3-69) Hypo 10.8 75 0.0055 19.8 2.3 17 172-188 51-67 (67)
5 d1rh1a1 b.110.1.1 (A:10-312) C 7.6 96 0.007 24.8 2.3 21 168-188 278-298 (303)
6 d1z8ua1 a.7.11.1 (A:2-91) Alph 7.2 2.2E+02 0.016 18.4 3.7 11 150-160 43-53 (90)
7 d1seda_ a.219.1.1 (A:) Hypothe 6.7 1.1E+02 0.0081 21.0 2.0 14 176-189 50-63 (112)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.7 1.1E+02 0.0083 22.3 1.8 16 41-56 293-308 (348)
9 d1khva_ e.8.1.4 (A:) Viral RNA 4.6 2.8E+02 0.021 22.7 3.8 19 40-58 307-325 (497)
10 d2j01i2 d.100.1.1 (I:1-55) Rib 4.1 2.3E+02 0.017 16.6 2.1 21 154-174 25-45 (55)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=39.53 E-value=27 Score=19.56 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=21.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHhH
Q psy10161 130 DGPQTLAYIFLPNLVLVYYLFYQFFK 155 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 155 (197)
+-.+...++++.......+||.++|.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 44577888888888888999999885
No 2
>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator ChaB {Escherichia coli [TaxId: 562]}
Probab=15.52 E-value=67 Score=20.59 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=7.1
Q ss_pred cCCCccccC
Q psy10161 188 NGGQWSQKS 196 (197)
Q Consensus 188 ~~~~~~~~~ 196 (197)
++|.|..||
T Consensus 67 ~dG~Wv~k~ 75 (75)
T d1sg7a1 67 DDDKWHKKS 75 (75)
T ss_dssp SSSCEEECC
T ss_pred CCCceeeCc
Confidence 478999875
No 3
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=15.03 E-value=38 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=15.7
Q ss_pred hHHhcCCCCCCCCCCCcchhHHH
Q psy10161 154 FKRTYLGTDHPNKYPNKTNKKLQ 176 (197)
Q Consensus 154 y~~sY~~~~~~~~~~~~~~~~~~ 176 (197)
|.++|+-+++....+.+.+.+.-
T Consensus 25 yaRNyLiP~glA~~at~~n~~~~ 47 (58)
T d2gycf2 25 YARNFLVPQGKAVPATKKNIEFF 47 (58)
T ss_dssp TTTTTTTTTTSEEECCCHHHHHH
T ss_pred hhHHHhccCCceecCCHHHHHHH
Confidence 66788888777766666665544
No 4
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=10.79 E-value=75 Score=19.76 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHhhhc
Q psy10161 172 NKKLQQLQEQYQRQKQN 188 (197)
Q Consensus 172 ~~~~~~~~~~~~~~~~~ 188 (197)
-|..|-+.|+|++-|++
T Consensus 51 lkRiqHLdEAY~KVk~~ 67 (67)
T d2gsva1 51 LKRIQHLDEAYNKVKRG 67 (67)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 47788899999988763
No 5
>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.56 E-value=96 Score=24.78 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=15.4
Q ss_pred CCcchhHHHHHHHHHHHhhhc
Q psy10161 168 PNKTNKKLQQLQEQYQRQKQN 188 (197)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~ 188 (197)
..-+....+|.||+++|+||+
T Consensus 278 diLdsg~~krRQEeEn~~k~~ 298 (303)
T d1rh1a1 278 EILDSNSLSQRQEAENNAKDD 298 (303)
T ss_dssp CCCBHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHhHHHHHHHhhhhhh
Confidence 344567777788888888875
No 6
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.24 E-value=2.2e+02 Score=18.45 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.5
Q ss_pred HHHHhHHhcCC
Q psy10161 150 FYQFFKRTYLG 160 (197)
Q Consensus 150 F~~Fy~~sY~~ 160 (197)
..|||.+-|.+
T Consensus 43 Wvn~Yinyy~~ 53 (90)
T d1z8ua1 43 WMNFYINYYRQ 53 (90)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 45667666643
No 7
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=6.73 E-value=1.1e+02 Score=20.99 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhcC
Q psy10161 176 QQLQEQYQRQKQNG 189 (197)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (197)
+++.++|++||.+|
T Consensus 50 eeL~~q~~~QKaeG 63 (112)
T d1seda_ 50 DELSEELATQKAQG 63 (112)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc
Confidence 56788899999887
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.74 E-value=1.1e+02 Score=22.31 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10161 41 FPILLNSSVHIIMYTY 56 (197)
Q Consensus 41 ~~~~lNs~VH~iMY~Y 56 (197)
+.+.+|+.++|++|.+
T Consensus 293 ~l~~~ns~iNPiIY~~ 308 (348)
T d1u19a_ 293 FFAKTSAVYNPVIYIM 308 (348)
T ss_dssp HHGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3466999999999986
No 9
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=4.64 E-value=2.8e+02 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10161 40 LFPILLNSSVHIIMYTYYL 58 (197)
Q Consensus 40 ~~~~~lNs~VH~iMY~YY~ 58 (197)
...+++||++|-+|..|=+
T Consensus 307 p~Tsi~NSi~N~i~i~~a~ 325 (497)
T d1khva_ 307 PFTSVINSICHWLLWSAAV 325 (497)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhhHHHHHHHHHHH
Confidence 3779999999998765533
No 10
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=4.12 E-value=2.3e+02 Score=16.62 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=14.7
Q ss_pred hHHhcCCCCCCCCCCCcchhH
Q psy10161 154 FKRTYLGTDHPNKYPNKTNKK 174 (197)
Q Consensus 154 y~~sY~~~~~~~~~~~~~~~~ 174 (197)
|.++|+-+++....+.+.+.+
T Consensus 25 yaRN~LiP~~~A~~at~~nl~ 45 (55)
T d2j01i2 25 YARNYLLPRGLAVLATESNLK 45 (55)
T ss_dssp HHHHTTTTTTSEEECCHHHHH
T ss_pred hHHHHhcccCchhhcCHHHHH
Confidence 678888888776666665544
Done!