RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10161
(197 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 115 bits (291), Expect = 4e-32
Identities = 50/162 (30%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 1 IFFILRKKYNQVSVLHLYHHVSTLFICWWGSRYYPGGLALFPILLNSSVHIIMYTYYLIA 60
+F +LRKK Q+S LH+YHH + L W G +Y PGG F LLNS VH+IMY YY +A
Sbjct: 105 VFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLA 164
Query: 61 NFGPKWQALVAPIKPYITIIQMVSSFTFTLCRNHEISRRLSHDPTICSQAQFTLLILMSF 120
G + L K YIT +Q++ QF L +
Sbjct: 165 ALGARG--LPVWWKKYITQLQII---------------------------QFVLGLAHVG 195
Query: 121 VLVSPYY---CKDGPQTLAYIFLPNLVLVYYLFYQFFKRTYL 159
+ Y C + L V +LF F+ ++Y
Sbjct: 196 YALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYK 237
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 43.3 bits (102), Expect = 3e-05
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 1 IFFILRKKYNQVSVLHLYHHVSTLFICWWGSRYYPGGLALFPIL--LNSSVHIIMYTYYL 58
F I+ K ++ L +HHV+ W Y G +++ +N VH IMY Y+
Sbjct: 130 FFLIMGGK--KLPFLSWFHHVTIFLYAWMS---YQQGSSIWICAAAMNYFVHSIMYFYFA 184
Query: 59 IANFGPKWQALVAPIKPYIT---IIQMVSSFTFT 89
++ G ++ LV P YIT I QMV +
Sbjct: 185 LSEAG--FKKLVKPFAMYITLLQITQMVGGLFVS 216
>gnl|CDD|177210 MTH00153, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 28.3 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 43 ILLNSSVHIIMY-TYYLIANF 62
+L NSS+ II++ TYY++A+F
Sbjct: 355 VLANSSIDIILHDTYYVVAHF 375
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 28.3 bits (64), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 9/27 (33%)
Query: 169 NKTNKKLQQL---------QEQYQRQK 186
N TN+KLQQ QE+YQR+
Sbjct: 398 NYTNEKLQQFFNHHMFVLEQEEYQREG 424
>gnl|CDD|179444 PRK02557, psbE, cytochrome b559 subunit alpha; Provisional.
Length = 81
Score = 25.8 bits (57), Expect = 5.3
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 134 TLAYIFLPNLVLVYY-LFYQFFKRTYLGTDHPNKYPNKTNKKLQQLQEQYQRQKQ 187
T+ +F+ + V L Y F GT P++Y ++ K + ++Y+ ++Q
Sbjct: 26 TIPALFIAGWLFVSTGLAYDAF-----GTPRPDEYFTQSRSKAPIVSDRYEAKQQ 75
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 26.6 bits (59), Expect = 8.4
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 150 FYQFFKRTYLGTDHPNKYPNKTNKKLQQLQEQ 181
FYQF K P+ PN ++K+ +L++
Sbjct: 59 FYQFVKENLY---FPDAKPNIIHQKMAELEKM 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.454
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,045,845
Number of extensions: 928141
Number of successful extensions: 1363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1358
Number of HSP's successfully gapped: 45
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)