RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10161
(197 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.005
Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 54/178 (30%)
Query: 5 LRKKYN----------QVSVLHLYHHVSTLFICWWGSRYYPGGLALFPILLNSSVHIIMY 54
LR Y + S L + T + + GL + L N S
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNT---- 225
Query: 55 TYYLIANFGPKWQALV-APIK-PYITIIQMVSSFTFTLCRNHEIS----RRLSHDPTICS 108
P L+ PI P I +IQ+ + + R T S
Sbjct: 226 ---------PDKDYLLSIPISCPLIGVIQLAHYVVT--AKLLGFTPGELRSYLKGATGHS 274
Query: 109 QAQFTLLILMSFVLVSPYYCKDGPQTLAYIFLPNLVLVY-YLFY------QFFKRTYL 159
Q ++ + V ++ F ++ LF+ + + T L
Sbjct: 275 QG-----LVTA-VAIAE--TDSWES-----FFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Score = 33.5 bits (76), Expect = 0.043
Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 35/129 (27%)
Query: 69 LVAPIKPYITIIQMVSSFTFTLCRNHEISRRLSHDPTICSQ----AQFTLLILMSFV--L 122
LV P + Q+ F L E + + D + +F + +V L
Sbjct: 21 LV-PTASFFIASQLQEQFNKIL---PEPTEGFAADDEPTTPAELVGKF-----LGYVSSL 71
Query: 123 VSPYYCKDGPQTLAYIFLPNLVLVYYLFYQFFKRTYL-GTD-H------PNKYPNKTNKK 174
V P Q L F+ YL G D H + K
Sbjct: 72 VEPSKVGQFDQVLNLCL------------TEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 175 LQQLQEQYQ 183
+ ++
Sbjct: 120 KELIKNYIT 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.062
Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 49/181 (27%)
Query: 32 RYYPGGLALFPILLNSSVHIIMYTYYLIANFGPKWQALVAPIKPYITIIQMVSSF-TFTL 90
+ + L++FP S HI LI W + ++ +V+ ++L
Sbjct: 373 KMFDR-LSVFP----PSAHIPTILLSLI------WFDV-----IKSDVMVVVNKLHKYSL 416
Query: 91 CRNHEISRRLS-HDPTICSQAQFTLLILMSFVLVSPY-----YCKDG---PQTLAYIF-- 139
+S + + + + +V Y + D P Y +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 140 ----------------LPNLVLVYYLFYQFFKRTYLGTDHPNKYPNKTNKKLQQLQEQYQ 183
+ +L ++F ++ LQQL + Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMV----FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYK 531
Query: 184 R 184
Sbjct: 532 P 532
Score = 31.4 bits (70), Expect = 0.19
Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 20/144 (13%)
Query: 20 HVSTLFICWW-GSRYYPGGLAL---FPILLNSSVHIIMYTYYLIANFGPKWQALVAPIKP 75
H +L S + L + ++H + +Y I + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 76 YI-----------TIIQMVSSFTFTLCRNHEISRRLSHDPTICSQAQFTLLILMSFVLVS 124
Y + ++ F + +++ HD T + + L L
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 125 PYYCKDGPQTLAYI-----FLPNL 143
PY C + P+ + FLP +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKI 555
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.6
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 172 NKKLQQLQEQYQRQKQNGGQWSQKSK 197
K+LQ+L + +Q +W +K+K
Sbjct: 95 RKRLQELDAASKVMEQ---EWREKAK 117
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine
nucleosidase; MTAN, alpha and beta proteins, hydrolase;
HET: FMC; 1.70A {Staphylococcus aureus}
Length = 230
Score = 26.6 bits (59), Expect = 5.1
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 30 GSRYYPGGLALFPILLNSS----VHIIMYTYYLIANFGPK 65
++Y G L +++ S V+ + T LI F P
Sbjct: 31 HVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPD 70
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A*
1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A*
2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A*
3abm_A* 3ag1_A* ...
Length = 514
Score = 26.4 bits (59), Expect = 6.9
Identities = 10/21 (47%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 43 ILLNSSVHIIMY-TYYLIANF 62
+L NSS+ I+++ TYY++A+F
Sbjct: 357 VLANSSLDIVLHDTYYVVAHF 377
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 26.2 bits (58), Expect = 8.6
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 9/25 (36%)
Query: 169 NKTNKKLQQL---------QEQYQR 184
N TN+KLQQL QE+YQR
Sbjct: 451 NYTNEKLQQLFNHTMFVLEQEEYQR 475
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 26.1 bits (58), Expect = 9.8
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 9/25 (36%)
Query: 169 NKTNKKLQQL---------QEQYQR 184
N N+KLQQ QE YQ+
Sbjct: 470 NYCNEKLQQFFNERILKEEQELYQK 494
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.0 bits (57), Expect = 9.9
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 9/25 (36%)
Query: 169 NKTNKKLQQL---------QEQYQR 184
N TN+KLQQL QE+YQR
Sbjct: 482 NYTNEKLQQLFNHTMFILEQEEYQR 506
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.454
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,965,398
Number of extensions: 160266
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 20
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.9 bits)