RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10161
         (197 letters)



>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 26.3 bits (58), Expect = 0.54
 Identities = 3/22 (13%), Positives = 8/22 (36%)

Query: 7  KKYNQVSVLHLYHHVSTLFICW 28
            +  +    L+  ++  F C 
Sbjct: 22 STFTDLEANQLFDPMTGTFRCT 43


>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 111

 Score = 24.2 bits (53), Expect = 5.9
 Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 9/49 (18%)

Query: 151 YQFFKRTYLGTDHPNKYPNKTNKKL----QQLQEQYQRQKQNGGQWSQK 195
           Y+  K             +    K+       QE+ Q+  Q G      
Sbjct: 21  YKAVKAAKDAIAA-----DAEASKIFTDYLAFQEEIQKLAQTGQMPDAS 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,047
Number of extensions: 33423
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 8
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.2 bits)