RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10162
         (141 letters)



>gnl|CDD|200929 pfam00014, Kunitz_BPTI, Kunitz/Bovine pancreatic trypsin
          inhibitor domain.  Indicative of a protease inhibitor,
          usually a serine protease inhibitor. Structure is a
          disulfide rich alpha+beta fold. BPTI (bovine pancreatic
          trypsin inhibitor) is an extensively studied model
          structure. Certain family members are similar to the
          tick anticoagulant peptide (TAP). This is a highly
          selective inhibitor of factor Xa in the blood
          coagulation pathways. TAP molecules are highly dipolar,
          and are arranged to form a twisted two- stranded
          antiparallel beta-sheet followed by an alpha helix.
          Length = 53

 Score = 70.8 bits (174), Expect = 1e-17
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFCF 75
           DPG  +G+  ++Y++P T  C+ F YGGC G+AN F ++EECE  C 
Sbjct: 6  PDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKACR 53


>gnl|CDD|197529 smart00131, KU, BPTI/Kunitz family of serine protease inhibitors.
           Serine protease inhibitors. One member of the family
          is encoded by an alternatively-spliced form of
          Alzheimer's amyloid beta-protein.
          Length = 53

 Score = 70.8 bits (174), Expect = 1e-17
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
           D G   G+  ++Y+DP+T +C+ F YGGC G+AN F ++EECE  C
Sbjct: 7  PDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53


>gnl|CDD|238057 cd00109, KU, BPTI/Kunitz family of serine protease inhibitors;
          Structure is a disulfide rich alpha+beta fold. BPTI
          (bovine pancreatic trypsin inhibitor) is an extensively
          studied model structure.
          Length = 54

 Score = 67.3 bits (165), Expect = 3e-16
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
           D G  K    ++Y+D  T  C+ F YGGC G+AN F+T EECE  C
Sbjct: 7  PDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTC 53


>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
          Length = 333

 Score = 32.1 bits (74), Expect = 0.067
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 7/40 (17%)

Query: 24  HLIVADPGHVKGNFSKFY---FDPDTSSCQE----FRYGG 56
           H+ V DPG V+GN    Y   FDPD +   E    ++ GG
Sbjct: 227 HIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGG 266


>gnl|CDD|220399 pfam09783, Vac_ImportDeg, Vacuolar import and degradation protein. 
           Members of this family are involved in the negative
           regulation of gluconeogenesis. They are required for
           both proteosome-dependent and vacuolar catabolite
           degradation of fructose-1,6-bisphosphatase (FBPase),
           where they probably regulate FBPase targeting from the
           FBPase-containing vesicles to the vacuole.
          Length = 176

 Score = 28.8 bits (65), Expect = 0.76
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 6   PDQR-RADLGASCTVLAGFHLIVAD--PGHVKGNFSKFYFDPDTSSCQE 51
           PD R ++  GAS     GF+ I  D   G ++G    +Y+ P++   Q+
Sbjct: 127 PDHRVKSISGAS---FEGFYYICFDQSTGSIQG----YYYHPNSEKFQQ 168


>gnl|CDD|221740 pfam12732, YtxH, YtxH-like protein.  This family of proteins is
           found in bacteria. Proteins in this family are typically
           between 100 and 143 amino acids in length. The
           N-terminal region is the most conserved. Proteins is
           this family are functionally uncharacterized.
          Length = 66

 Score = 24.9 bits (55), Expect = 5.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 108 VILGLLYKNRSGDKTRQD 125
              GLL   +SG +TR+ 
Sbjct: 13  AAAGLLLAPKSGKETRKK 30


>gnl|CDD|185054 PRK15099, PRK15099, O-antigen translocase; Provisional.
          Length = 416

 Score = 26.5 bits (59), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 2  HAPRPDQRRADLGASCTVLAGFHLIVA 28
          +  +P Q RA +G S  ++ GF  ++A
Sbjct: 69 YHDQPQQLRAVVGTSSAMVLGFSTLLA 95


>gnl|CDD|182363 PRK10297, PRK10297, PTS system N,N'-diacetylchitobiose-specific
           transporter subunit IIC; Provisional.
          Length = 452

 Score = 26.3 bits (58), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 93  GIIIWAMNKASTKFHVIL 110
           GII WA+N   T FH I+
Sbjct: 201 GIIAWALNTWGTNFHQII 218


>gnl|CDD|236839 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional.
          Length = 542

 Score = 26.0 bits (58), Expect = 8.4
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 4/15 (26%)

Query: 99  MNKASTKFHVILGLL 113
           MNK     HVILGLL
Sbjct: 351 MNK----LHVILGLL 361


>gnl|CDD|183144 PRK11460, PRK11460, putative hydrolase; Provisional.
          Length = 232

 Score = 25.8 bits (57), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 8   QRRADLGASCTVLAGF 23
           Q+++ +GAS T L GF
Sbjct: 95  QQQSGVGASATALIGF 110


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,035,328
Number of extensions: 592536
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 13
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)