RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10162
(141 letters)
>d1zr0b1 g.8.1.1 (B:1A-59) Tissue factor pathway inhibitor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 67.6 bits (165), Expect = 7e-17
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFCFKQE 78
D G + ++Y+D T SC++F YGGC G+AN F T E C+ C++ E
Sbjct: 13 LDYGPCRALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDACWRIE 63
>d1ktha_ g.8.1.1 (A:) Collagen type VI (domain C5 from alpha 3
chain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 66.1 bits (161), Expect = 3e-16
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
D G + K+Y+DP+T SC F YGGC G+ N+F + +ECE C
Sbjct: 9 KDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVC 55
>d1dtxa_ g.8.1.1 (A:) alpha-Dendrotoxin {Green mamba (Dendroaspis
angusticeps) [TaxId: 8618]}
Length = 59
Score = 66.0 bits (161), Expect = 3e-16
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
+PG FY++ C+ F + GC G++NRF TIEEC C
Sbjct: 11 RNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTC 57
>d1irha_ g.8.1.1 (A:) Tissue factor pathway inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 65.6 bits (160), Expect = 4e-16
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFCFK 76
AD G + N ++FY++ C+ F+Y GC G+ N F++ +EC C K
Sbjct: 12 ADRGLCRANENRFYYNSVIGKCRPFKYSGCGGNENNFTSKQECLRACKK 60
>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor
complex {Human (Homo sapiens) [TaxId: 9606]}
Length = 56
Score = 65.7 bits (160), Expect = 4e-16
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
G + + FD C F YGGC G+ N+F + +EC +C
Sbjct: 8 IVRGPCRAFIQLWAFDAVKGKCVLFPYGGCQGNGNKFYSEKECREYC 54
>d1dtka_ g.8.1.1 (A:) Dendrotoxin K {Black mamba (Dendroaspis
polylepis polylepis) [TaxId: 8620]}
Length = 57
Score = 65.6 bits (160), Expect = 4e-16
Identities = 20/47 (42%), Positives = 22/47 (46%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
G K FY+ C F Y GC G+ANRF TIEEC C
Sbjct: 9 LRIGPCKRKIPSFYYKWKAKQCLPFDYSGCGGNANRFKTIEECRRTC 55
>d1aapa_ g.8.1.1 (A:) Alzheimer's amyloid B-protein precursor,
APPI {Human (Homo sapiens) [TaxId: 9606]}
Length = 56
Score = 65.2 bits (159), Expect = 5e-16
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
A+ G + S++YFD C F YGGC G+ N F T E C + C
Sbjct: 9 AETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVC 55
>d1bf0a_ g.8.1.1 (A:) Calcicludine (cac) {Green mamba (Dendroaspis
angusticeps) [TaxId: 8618]}
Length = 60
Score = 65.3 bits (159), Expect = 6e-16
Identities = 21/47 (44%), Positives = 23/47 (48%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
G K FS FYF C F + GC G+ANRF TI EC C
Sbjct: 11 VRIGSCKKQFSSFYFKWTAKKCLPFLFSGCGGNANRFQTIGECRKKC 57
>d1shpa_ g.8.1.1 (A:) Trypsin inhibitor {Sea anemone
(Stichodactyla helianthus) [TaxId: 6123]}
Length = 55
Score = 64.9 bits (158), Expect = 9e-16
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
G KG F +FYFD +T C F YGGC G+ N F T+ +C + C
Sbjct: 7 KKVGRCKGYFPRFYFDSETGKCTPFIYGGCGGNGNNFETLHQCRAIC 53
>d1tfxc_ g.8.1.1 (C:) Tissue factor pathway inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 64.9 bits (158), Expect = 9e-16
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
DPG +G ++++++ T C+ F+YGGC G+ N F T+EEC++ C
Sbjct: 9 EDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNIC 55
>d1g6xa_ g.8.1.1 (A:) Pancreatic trypsin inhibitor, BPTI {Cow (Bos
taurus) [TaxId: 9913]}
Length = 58
Score = 64.9 bits (158), Expect = 9e-16
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
G + +++++ CQ F YGGC N F + E+C C
Sbjct: 9 PYAGACRARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCLRTC 55
>d1bika1 g.8.1.1 (A:25-78) Bikunin from inter-alpha-inhibitor
complex {Human (Homo sapiens) [TaxId: 9606]}
Length = 54
Score = 64.5 bits (157), Expect = 1e-15
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
G G S+++++ + +C+ F+YGGC G+ N F T +EC C
Sbjct: 6 YSAGPCMGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTC 52
>d1jc6a_ g.8.1.1 (A:) Venom basic protease inhibitor IX (VIIIb)
{Banded krait (Bungarus fasciatus) [TaxId: 8613]}
Length = 65
Score = 64.5 bits (157), Expect = 1e-15
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
+ G FY++ CQ+F YGGC G+AN F TI+EC+ C
Sbjct: 11 PETGRCNALIPAFYYNSHLHKCQKFNYGGCGGNANNFKTIDECQRTC 57
>d1bunb_ g.8.1.1 (B:) beta2-bungarotoxin, neurotoxin chain
{Many-banded krait (Bungarus multicinctus) [TaxId:
8616]}
Length = 61
Score = 63.8 bits (155), Expect = 2e-15
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 28 ADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
D + FY+ P C +FRYGGC G+ N F + C C
Sbjct: 11 PDTKICQTVVRAFYYKPSAKRCVQFRYGGCNGNGNHFKSDHLCRCEC 57
>d1tocr2 g.8.1.2 (R:57-119) Ornithodorin {Soft tick (Ornithodoros
moubata) [TaxId: 6938]}
Length = 63
Score = 28.2 bits (62), Expect = 0.10
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 41 YFDPDTSSCQEFRYGGCPGSANRFSTIEECESFC 74
Y+D D+ +C+ CP N F + EC+ C
Sbjct: 25 YYDSDSKTCKVLAAS-CPSGENTFESEVECQVAC 57
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta
chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
Length = 238
Score = 26.1 bits (57), Expect = 1.5
Identities = 13/67 (19%), Positives = 20/67 (29%)
Query: 1 MHAPRPDQRRADLGASCTVLAGFHLIVADPGHVKGNFSKFYFDPDTSSCQEFRYGGCPGS 60
+P + A H + G + S+FYF+ DT P
Sbjct: 137 FRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSE 196
Query: 61 ANRFSTI 67
R + I
Sbjct: 197 QQRRALI 203
>d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human
cytomegalovirus [TaxId: 10359]}
Length = 95
Score = 25.3 bits (55), Expect = 1.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 31 GHVKGNFSKFYFDPDTSSCQEFRYGG 56
G + GN S+F FDP YGG
Sbjct: 21 GSIVGNMSRFVFDPKAD------YGG 40
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 25.0 bits (54), Expect = 4.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 40 FYFDPDTSSCQEFRYGGCPGSANRFSTIE 68
F P ++ +F GG GS S IE
Sbjct: 51 IGFSPALTAAGQFGGGGADGSIIAHSNIE 79
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 24.6 bits (53), Expect = 5.3
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 40 FYFDPDTSSCQEFRYGGCPGSANRFSTIE 68
P + +F GG GS F TIE
Sbjct: 50 IAISPAMEAKGKFGGGGADGSIMIFDTIE 78
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 24.1 bits (51), Expect = 6.7
Identities = 10/34 (29%), Positives = 10/34 (29%)
Query: 12 DLGASCTVLAGFHLIVADPGHVKGNFSKFYFDPD 45
D A T V NF KF PD
Sbjct: 126 DATALMTDPKLITWSPVCRNDVAWNFEKFLVGPD 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 543,724
Number of extensions: 23206
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 20
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)