Query psy10163
Match_columns 615
No_of_seqs 372 out of 1792
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:28:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4597|consensus 99.8 2.2E-20 4.7E-25 194.8 12.0 252 268-553 36-424 (560)
2 cd00109 KU BPTI/Kunitz family 99.5 6.6E-14 1.4E-18 108.2 5.6 54 46-99 1-54 (54)
3 smart00131 KU BPTI/Kunitz fami 99.4 1.2E-13 2.6E-18 106.3 5.7 53 46-98 1-53 (53)
4 PF00014 Kunitz_BPTI: Kunitz/B 99.4 3.2E-13 7E-18 103.8 6.0 53 47-99 1-53 (53)
5 cd00109 KU BPTI/Kunitz family 99.4 5.9E-13 1.3E-17 102.9 5.8 53 498-550 2-54 (54)
6 smart00131 KU BPTI/Kunitz fami 99.4 7.2E-13 1.6E-17 102.0 5.5 52 498-549 2-53 (53)
7 PF00014 Kunitz_BPTI: Kunitz/B 99.3 1.6E-12 3.6E-17 99.9 6.1 53 498-550 1-53 (53)
8 KOG4295|consensus 99.2 2.1E-11 4.5E-16 127.1 7.4 109 447-556 2-139 (295)
9 KOG4295|consensus 98.9 1.2E-09 2.7E-14 113.7 5.9 59 44-102 75-136 (295)
10 cd05852 Ig5_Contactin-1 Fifth 98.7 3.4E-08 7.3E-13 81.2 5.7 71 355-427 1-71 (73)
11 cd05745 Ig3_Peroxidasin Third 98.7 3.3E-08 7.2E-13 81.1 5.5 72 354-427 1-72 (74)
12 cd05892 Ig_Myotilin_C C-termin 98.6 5.4E-08 1.2E-12 80.4 4.7 69 358-427 1-73 (75)
13 cd05894 Ig_C5_MyBP-C C5 immuno 98.6 7.8E-08 1.7E-12 81.6 5.8 80 348-428 3-85 (86)
14 cd05893 Ig_Palladin_C C-termin 98.5 7.3E-08 1.6E-12 79.6 4.5 69 358-427 1-73 (75)
15 cd05738 Ig2_RPTP_IIa_LAR_like 98.5 1.3E-07 2.8E-12 77.6 5.0 72 358-429 1-73 (74)
16 cd05724 Ig2_Robo Second immuno 98.5 2.7E-07 5.8E-12 77.5 6.7 78 349-426 5-83 (86)
17 cd05867 Ig4_L1-CAM_like Fourth 98.5 1.9E-07 4.2E-12 77.0 5.5 74 355-429 1-75 (76)
18 cd05726 Ig4_Robo Fhird immunog 98.5 2.7E-07 5.8E-12 78.7 6.2 77 355-432 1-84 (90)
19 cd05735 Ig8_DSCAM Eight immuno 98.5 3.5E-07 7.5E-12 77.9 6.3 76 355-431 1-83 (88)
20 cd05723 Ig4_Neogenin Fourth im 98.4 2.6E-07 5.7E-12 75.2 5.1 68 358-427 2-69 (71)
21 cd04969 Ig5_Contactin_like Fif 98.4 3.7E-07 7.9E-12 74.6 5.4 70 355-426 1-70 (73)
22 cd05851 Ig3_Contactin-1 Third 98.4 3.5E-07 7.7E-12 77.8 5.5 76 349-427 10-85 (88)
23 cd05764 Ig_2 Subgroup of the i 98.4 5.3E-07 1.1E-11 73.7 6.3 71 355-427 1-72 (74)
24 cd05744 Ig_Myotilin_C_like Imm 98.4 3.4E-07 7.4E-12 75.5 5.0 69 358-427 1-73 (75)
25 cd05848 Ig1_Contactin-5 First 98.4 4.9E-07 1.1E-11 78.0 6.0 73 353-425 17-90 (94)
26 cd05730 Ig3_NCAM-1_like Third 98.4 4E-07 8.7E-12 78.3 5.5 80 349-429 12-92 (95)
27 cd05868 Ig4_NrCAM Fourth immun 98.4 3.7E-07 8.1E-12 75.4 4.8 74 355-429 1-75 (76)
28 cd05737 Ig_Myomesin_like_C C-t 98.4 5.1E-07 1.1E-11 77.4 5.7 70 349-419 10-83 (92)
29 cd05734 Ig7_DSCAM Seventh immu 98.4 4.5E-07 9.7E-12 75.3 5.0 71 358-428 1-78 (79)
30 cd05865 Ig1_NCAM-1 First immun 98.4 8.9E-07 1.9E-11 76.8 6.5 78 351-428 11-94 (96)
31 cd07693 Ig1_Robo First immunog 98.4 1.1E-06 2.4E-11 75.5 7.1 81 349-429 10-99 (100)
32 cd05746 Ig4_Peroxidasin Fourth 98.3 4.8E-07 1E-11 73.2 4.5 61 358-419 1-61 (69)
33 cd05765 Ig_3 Subgroup of the i 98.3 6.9E-07 1.5E-11 74.1 5.5 74 355-429 1-81 (81)
34 PF00095 WAP: WAP-type (Whey A 98.3 1.1E-07 2.4E-12 69.8 0.5 41 270-310 1-43 (43)
35 cd04978 Ig4_L1-NrCAM_like Four 98.3 7E-07 1.5E-11 73.2 5.4 74 355-429 1-75 (76)
36 cd05725 Ig3_Robo Third immunog 98.3 5.8E-07 1.3E-11 72.5 4.8 67 358-427 1-67 (69)
37 cd05870 Ig5_NCAM-2 Fifth immun 98.3 9.7E-07 2.1E-11 76.6 6.5 79 349-428 10-97 (98)
38 cd05849 Ig1_Contactin-1 First 98.3 1.1E-06 2.4E-11 75.7 5.9 71 355-426 19-90 (93)
39 cd05722 Ig1_Neogenin First imm 98.3 1.5E-06 3.2E-11 74.9 6.6 79 350-428 9-94 (95)
40 cd05850 Ig1_Contactin-2 First 98.3 1.1E-06 2.5E-11 75.7 5.9 71 354-424 18-89 (94)
41 cd04968 Ig3_Contactin_like Thi 98.3 7.4E-07 1.6E-11 75.6 4.6 69 349-419 10-78 (88)
42 cd04974 Ig3_FGFR Third immunog 98.3 1.3E-06 2.8E-11 74.6 5.7 73 355-429 1-89 (90)
43 cd05876 Ig3_L1-CAM Third immun 98.3 9.1E-07 2E-11 72.0 4.1 70 358-429 1-70 (71)
44 cd05747 Ig5_Titin_like M5, fif 98.3 2.2E-06 4.7E-11 73.4 6.6 70 349-419 12-84 (92)
45 cd05866 Ig1_NCAM-2 First immun 98.2 1.9E-06 4.2E-11 74.1 6.0 76 350-427 10-89 (92)
46 cd05762 Ig8_MLCK Eighth immuno 98.2 2.1E-06 4.6E-11 74.7 6.2 81 349-431 9-92 (98)
47 cd05857 Ig2_FGFR Second immuno 98.2 2.1E-06 4.6E-11 72.0 6.0 77 351-428 5-84 (85)
48 cd04975 Ig4_SCFR_like Fourth i 98.2 2E-06 4.3E-11 75.4 5.7 82 347-429 10-99 (101)
49 cd05856 Ig2_FGFRL1-like Second 98.2 1.4E-06 3E-11 72.2 4.4 75 351-426 5-79 (82)
50 cd05763 Ig_1 Subgroup of the i 98.2 2.1E-06 4.5E-11 70.5 5.5 71 358-429 1-74 (75)
51 cd05760 Ig2_PTK7 Second immuno 98.2 2E-06 4.4E-11 71.1 5.4 72 358-429 1-74 (77)
52 cd05728 Ig4_Contactin-2-like F 98.2 2.2E-06 4.7E-11 72.4 5.6 75 350-427 9-83 (85)
53 cd05869 Ig5_NCAM-1 Fifth immun 98.2 2.3E-06 5.1E-11 74.0 5.7 75 352-427 14-95 (97)
54 cd05854 Ig6_Contactin-2 Sixth 98.2 2.7E-06 5.9E-11 71.9 6.0 75 356-431 1-83 (85)
55 smart00217 WAP Four-disulfide 98.2 1.2E-06 2.7E-11 65.4 3.4 42 270-311 1-47 (47)
56 cd05740 Ig_CEACAM_D4 Fourth im 98.2 2.8E-06 6E-11 72.9 5.8 77 350-429 13-90 (91)
57 cd05732 Ig5_NCAM-1_like Fifth 98.2 3E-06 6.4E-11 72.8 5.8 77 350-427 11-94 (96)
58 cd05891 Ig_M-protein_C C-termi 98.2 3.1E-06 6.8E-11 72.6 5.9 77 349-427 10-90 (92)
59 cd04970 Ig6_Contactin_like Six 98.2 2.5E-06 5.4E-11 71.8 5.2 74 357-431 2-83 (85)
60 cd04972 Ig_TrkABC_d4 Fourth do 98.2 2.5E-06 5.5E-11 72.7 5.2 76 351-427 11-88 (90)
61 cd05733 Ig6_L1-CAM_like Sixth 98.2 3E-06 6.4E-11 70.2 5.4 69 358-426 1-75 (77)
62 cd00199 WAP whey acidic protei 98.2 1.4E-06 3.1E-11 68.5 3.2 44 268-311 14-60 (60)
63 cd05758 Ig5_KIRREL3-like Fifth 98.1 4E-06 8.7E-11 72.7 6.1 76 349-425 10-95 (98)
64 cd05739 Ig3_RPTP_IIa_LAR_like 98.1 4.1E-06 8.8E-11 67.9 5.0 61 355-419 1-61 (69)
65 cd05874 Ig6_NrCAM Sixth immuno 98.1 4.3E-06 9.4E-11 69.3 5.2 68 358-425 1-74 (77)
66 cd05858 Ig3_FGFR-2 Third immun 98.1 4.9E-06 1.1E-10 71.0 5.5 73 355-429 1-89 (90)
67 cd04977 Ig1_NCAM-1_like First 98.1 7.8E-06 1.7E-10 70.1 6.5 77 350-427 10-90 (92)
68 cd05773 Ig8_hNephrin_like Eigh 98.1 7.7E-06 1.7E-10 72.6 6.5 77 353-430 21-105 (109)
69 cd05748 Ig_Titin_like Immunogl 98.1 6.3E-06 1.4E-10 67.3 5.2 68 358-427 2-72 (74)
70 cd05853 Ig6_Contactin-4 Sixth 98.1 6.6E-06 1.4E-10 69.7 5.4 75 357-432 2-84 (85)
71 cd05756 Ig1_IL1R_like First im 98.0 7.9E-06 1.7E-10 70.6 5.5 77 350-427 9-92 (94)
72 cd05859 Ig4_PDGFR-alpha Fourth 98.0 7.4E-06 1.6E-10 71.7 4.8 79 350-429 13-99 (101)
73 cd05743 Ig_Perlecan_D2_like Im 98.0 7E-06 1.5E-10 68.0 4.3 64 355-419 1-67 (78)
74 cd05863 Ig2_VEGFR-3 Second imm 98.0 5.2E-06 1.1E-10 67.0 3.3 62 359-427 2-63 (67)
75 cd05875 Ig6_hNeurofascin_like 98.0 1E-05 2.2E-10 67.1 5.1 68 358-425 1-74 (77)
76 cd05731 Ig3_L1-CAM_like Third 98.0 6.4E-06 1.4E-10 66.4 3.8 69 358-429 1-70 (71)
77 cd05736 Ig2_Follistatin_like S 98.0 1.1E-05 2.4E-10 66.2 5.2 72 358-430 1-74 (76)
78 cd04967 Ig1_Contactin First Ig 98.0 1.2E-05 2.5E-10 68.7 5.5 65 354-419 18-84 (91)
79 cd05749 Ig2_Tyro3_like Second 98.0 8.9E-06 1.9E-10 68.2 4.4 67 349-421 7-74 (81)
80 cd04976 Ig2_VEGFR Second immun 97.9 9.3E-06 2E-10 66.1 4.2 59 359-419 2-60 (71)
81 PF07679 I-set: Immunoglobulin 97.9 1.4E-05 3E-10 67.5 5.2 78 348-427 8-88 (90)
82 cd05845 Ig2_L1-CAM_like Second 97.9 2.6E-05 5.7E-10 67.3 6.6 72 348-419 11-84 (95)
83 cd04973 Ig1_FGFR First immunog 97.9 2.9E-05 6.3E-10 64.5 5.8 67 350-419 4-70 (79)
84 cd04971 Ig_TrKABC_d5 Fifth dom 97.8 2.1E-05 4.6E-10 65.9 4.6 60 360-419 3-71 (81)
85 cd05864 Ig2_VEGFR-2 Second imm 97.8 1.5E-05 3.3E-10 64.8 3.5 58 359-419 2-59 (70)
86 cd05855 Ig_TrkB_d5 Fifth domai 97.7 3.2E-05 6.8E-10 64.6 4.3 60 360-419 3-69 (79)
87 KOG3513|consensus 97.7 0.00015 3.3E-09 85.1 11.0 89 349-438 340-429 (1051)
88 KOG4597|consensus 97.7 4.6E-05 1E-09 81.2 6.0 99 47-220 314-416 (560)
89 cd07702 Ig2_VEGFR-1 Second imm 97.7 3E-05 6.6E-10 63.5 3.4 59 359-418 2-60 (72)
90 cd05898 Ig5_KIRREL3 Fifth immu 97.7 7.1E-05 1.5E-09 65.1 5.7 79 347-426 8-96 (98)
91 cd05873 Ig_Sema4D_like Immunog 97.7 4.9E-05 1.1E-09 64.7 4.6 67 349-417 5-71 (87)
92 cd04979 Ig_Semaphorin_C Immuno 97.7 6.5E-05 1.4E-09 63.8 5.2 79 349-429 5-86 (89)
93 cd05882 Ig1_Necl-1 First (N-te 97.6 7.7E-05 1.7E-09 64.5 4.7 68 348-415 5-83 (95)
94 smart00408 IGc2 Immunoglobulin 97.6 0.00017 3.6E-09 55.3 5.9 63 354-418 1-63 (63)
95 cd05750 Ig_Pro_neuregulin Immu 97.6 8.7E-05 1.9E-09 60.4 4.3 62 358-419 1-68 (75)
96 cd05729 Ig2_FGFR_like Second i 97.5 0.00016 3.6E-09 59.9 5.9 68 351-419 5-76 (85)
97 KOG3513|consensus 97.5 0.00015 3.3E-09 85.1 6.8 83 346-430 432-514 (1051)
98 cd05727 Ig2_Contactin-2-like S 97.5 0.00014 3.1E-09 62.9 4.8 70 350-419 13-85 (96)
99 cd05754 Ig3_Perlecan_like Thir 97.4 0.00018 3.9E-09 60.4 4.6 66 350-419 11-77 (85)
100 cd05742 Ig1_VEGFR_like First i 97.4 0.00018 4E-09 60.2 4.3 65 355-419 1-74 (84)
101 cd05871 Ig_Semaphorin_classIII 97.4 0.00025 5.3E-09 60.8 4.9 79 348-429 4-88 (91)
102 cd05861 Ig1_PDGFR-alphabeta Fr 97.3 0.00039 8.5E-09 58.5 5.0 64 355-418 1-70 (84)
103 cd05752 Ig1_FcgammaR_like Frst 97.2 0.00084 1.8E-08 55.8 6.6 58 350-416 10-68 (78)
104 cd07701 Ig1_Necl-3 First (N-te 97.2 0.0006 1.3E-08 58.9 5.2 68 349-416 6-84 (95)
105 cd05757 Ig2_IL1R_like Second i 97.1 0.00049 1.1E-08 59.2 3.8 68 350-419 5-77 (92)
106 cd05895 Ig_Pro_neuregulin-1 Im 97.1 0.00065 1.4E-08 55.7 4.0 62 358-419 1-69 (76)
107 KOG4194|consensus 96.9 0.0011 2.4E-08 73.2 5.5 83 348-431 620-705 (873)
108 cd05717 Ig1_Necl-1-3_like Firs 96.9 0.0025 5.4E-08 54.6 6.1 70 348-417 5-85 (95)
109 cd05753 Ig2_FcgammaR_like Seco 96.8 0.0015 3.3E-08 54.8 4.3 71 351-427 10-81 (83)
110 KOG4802|consensus 96.8 0.0008 1.7E-08 70.8 2.6 47 269-315 91-142 (516)
111 PF00047 ig: Immunoglobulin do 96.5 0.0016 3.5E-08 51.1 2.5 58 355-413 1-64 (64)
112 cd07690 Ig1_CD4 First immunogl 96.5 0.0045 9.8E-08 53.4 5.0 70 350-419 2-90 (94)
113 cd05741 Ig_CEACAM_D1_like Firs 96.5 0.0062 1.3E-07 51.5 5.8 73 355-427 1-90 (92)
114 smart00410 IG_like Immunoglobu 96.3 0.014 2.9E-07 47.1 6.9 69 350-419 4-76 (86)
115 smart00409 IG Immunoglobulin. 96.3 0.014 2.9E-07 47.1 6.9 69 350-419 4-76 (86)
116 PF13895 Ig_2: Immunoglobulin 96.3 0.0037 7.9E-08 50.8 3.3 61 351-419 10-70 (80)
117 PHA02826 IL-1 receptor-like pr 96.3 0.005 1.1E-07 61.9 4.7 65 351-416 140-210 (227)
118 KOG4221|consensus 96.0 0.015 3.2E-07 69.1 7.3 66 350-415 247-312 (1381)
119 PHA02826 IL-1 receptor-like pr 95.9 0.0085 1.8E-07 60.3 4.6 80 349-429 31-132 (227)
120 cd05862 Ig1_VEGFR First immuno 95.9 0.013 2.8E-07 49.5 4.8 65 355-419 1-75 (86)
121 PHA02785 IL-beta-binding prote 95.9 0.013 2.8E-07 62.3 5.8 76 349-429 35-116 (326)
122 cd05896 Ig1_IL1RAPL-1_like Fir 95.8 0.025 5.4E-07 49.6 6.2 71 349-419 9-95 (104)
123 cd05774 Ig_CEACAM_D1 First imm 95.6 0.031 6.6E-07 49.3 6.4 67 351-417 9-93 (105)
124 KOG4222|consensus 95.6 0.017 3.6E-07 68.2 5.9 83 347-429 38-127 (1281)
125 PHA02785 IL-beta-binding prote 95.4 0.02 4.3E-07 60.8 5.1 71 349-419 229-317 (326)
126 cd05900 Ig_Aggrecan Immunoglob 95.4 0.041 9E-07 49.1 6.3 76 355-431 2-110 (112)
127 KOG4222|consensus 95.3 0.031 6.6E-07 66.1 6.6 90 349-440 140-231 (1281)
128 cd05714 Ig_CSPGs_LP Immunoglob 95.2 0.028 6.2E-07 49.1 4.8 76 355-431 2-104 (106)
129 cd05885 Ig2_Necl-4 Second immu 95.2 0.041 8.9E-07 46.0 5.2 61 358-419 2-68 (80)
130 cd05759 Ig2_KIRREL3-like Secon 95.1 0.054 1.2E-06 44.9 6.0 60 358-417 2-69 (82)
131 cd05877 Ig_LP_like Immunoglobu 95.1 0.034 7.4E-07 48.5 4.9 77 354-431 1-104 (106)
132 cd05775 Ig_SLAM-CD84_like_N N- 95.0 0.037 8E-07 47.8 4.7 77 353-429 2-96 (97)
133 cd05897 Ig2_IL1R2_like Second 94.8 0.041 9E-07 47.6 4.6 68 352-419 7-80 (95)
134 cd00099 IgV Immunoglobulin var 94.7 0.036 7.9E-07 47.9 4.0 68 351-418 2-91 (105)
135 cd05872 Ig_Sema4B_like Immunog 94.6 0.046 9.9E-07 46.3 4.3 62 350-414 6-67 (85)
136 cd04983 IgV_TCR_alpha_like Imm 94.4 0.054 1.2E-06 47.3 4.5 68 349-416 7-92 (109)
137 cd05881 Ig1_Necl-2 First (N-te 94.2 0.11 2.4E-06 44.9 5.7 67 349-415 6-83 (95)
138 cd05860 Ig4_SCFR Fourth immuno 94.1 0.11 2.3E-06 45.5 5.5 80 348-428 11-98 (101)
139 KOG4221|consensus 93.8 0.1 2.2E-06 62.2 6.3 76 350-426 150-225 (1381)
140 cd05751 Ig1_LILRB1_like First 93.8 0.084 1.8E-06 44.9 4.3 67 348-416 9-75 (91)
141 PF13927 Ig_3: Immunoglobulin 93.8 0.032 7E-07 44.3 1.6 57 358-415 18-75 (75)
142 cd05899 IgV_TCR_beta Immunoglo 93.6 0.16 3.5E-06 44.6 5.8 67 349-416 7-94 (110)
143 cd05878 Ig_Aggrecan_like Immun 93.2 0.14 3E-06 45.4 4.7 76 355-431 2-108 (110)
144 cd04980 IgV_L_kappa Immunoglob 92.9 0.2 4.2E-06 43.7 5.3 67 349-415 9-92 (106)
145 cd05718 Ig1_PVR_like First imm 92.3 0.25 5.5E-06 42.1 5.1 63 357-419 2-88 (98)
146 cd04982 IgV_TCR_gamma Immunogl 92.3 0.28 6E-06 43.4 5.5 67 349-415 7-98 (116)
147 cd05902 Ig_Neurocan Immunoglob 91.7 0.2 4.3E-06 44.5 3.8 76 355-431 2-108 (110)
148 cd05713 Ig_MOG_like Immunoglob 91.3 0.41 8.9E-06 41.0 5.3 35 394-429 65-99 (100)
149 cd05716 Ig_pIgR Immunoglobulin 91.1 0.38 8.3E-06 41.1 4.9 67 350-416 2-86 (98)
150 KOG4194|consensus 91.0 0.21 4.6E-06 55.8 3.8 69 350-419 716-786 (873)
151 cd04984 IgV_L_lambda Immunoglo 90.8 0.93 2E-05 38.8 7.1 65 351-415 2-84 (98)
152 cd05880 Ig_EVA1 Immunoglobulin 90.7 0.61 1.3E-05 41.6 6.0 71 348-418 6-103 (115)
153 cd05901 Ig_Versican Immunoglob 89.7 0.56 1.2E-05 42.2 4.8 38 393-431 78-115 (117)
154 cd05715 Ig_P0-like Immunoglobu 88.9 0.91 2E-05 40.3 5.6 69 348-416 6-102 (116)
155 cd05879 Ig_P0 Immunoglobulin ( 88.6 1.2 2.6E-05 39.9 6.2 71 347-417 5-103 (116)
156 PF07686 V-set: Immunoglobulin 88.1 0.52 1.1E-05 40.6 3.4 68 349-416 10-101 (114)
157 PHA02987 Ig domain OX-2-like p 87.2 1.6 3.4E-05 42.3 6.3 84 348-431 23-123 (189)
158 cd05888 Ig1_Nectin-4_like Frst 87.1 1.2 2.6E-05 38.5 5.2 36 393-429 63-99 (100)
159 KOG3540|consensus 86.3 0.31 6.7E-06 52.7 1.1 57 45-101 107-163 (615)
160 cd00096 Ig Immunoglobulin doma 86.2 0.94 2E-05 33.9 3.6 60 358-417 1-66 (74)
161 cd05711 Ig_FcalphaRI Immunoglo 86.2 0.83 1.8E-05 39.1 3.6 65 348-413 8-74 (94)
162 cd00098 IgC Immunoglobulin Con 86.1 0.79 1.7E-05 38.7 3.4 65 353-417 11-85 (95)
163 cd07700 IgV_CD8_beta Immunoglo 84.5 1.8 3.8E-05 37.9 4.9 64 351-414 2-92 (107)
164 cd05846 Ig1_MRC-OX-2_like Firs 83.8 2.3 4.9E-05 36.4 5.2 65 355-419 1-87 (97)
165 cd07706 IgV_TCR_delta Immunogl 82.4 2 4.3E-05 38.0 4.5 66 349-414 8-92 (116)
166 cd07705 Ig2_Necl-1 Second immu 81.8 4.2 9.1E-05 33.9 6.0 60 358-417 2-69 (83)
167 cd07692 Ig_CD3_epsilon Immunog 81.5 2.6 5.7E-05 33.7 4.2 51 354-416 6-56 (65)
168 cd05761 Ig2_Necl-1-4_like Seco 81.2 3.9 8.4E-05 33.8 5.5 60 358-418 2-69 (82)
169 KOG3540|consensus 78.6 0.86 1.9E-05 49.5 0.9 56 497-552 108-163 (615)
170 cd05887 Ig1_Nectin-3_like Firs 78.5 4 8.6E-05 35.3 4.8 35 393-428 59-94 (96)
171 cd05720 Ig_CD8_alpha Immunoglo 78.0 3.7 7.9E-05 35.7 4.6 63 352-414 3-89 (104)
172 cd05883 Ig2_Necl-2 Second immu 77.0 5.4 0.00012 33.5 5.1 59 358-417 2-67 (82)
173 smart00406 IGv Immunoglobulin 76.7 3.2 7E-05 33.2 3.7 18 395-412 63-80 (81)
174 cd04981 IgV_H Immunoglobulin ( 76.5 3.6 7.8E-05 36.7 4.2 66 350-415 7-97 (117)
175 cd07694 Ig2_CD4 Second immunog 76.2 6.9 0.00015 33.3 5.5 59 352-415 11-72 (88)
176 cd05712 Ig_Siglec_N Immunoglob 75.3 4.8 0.00011 35.8 4.7 66 349-414 8-100 (119)
177 cd05755 Ig2_ICAM-1_like Second 74.1 5.1 0.00011 35.0 4.3 67 352-419 13-87 (100)
178 cd05884 Ig2_Necl-3 Second immu 73.0 9.3 0.0002 31.9 5.6 59 358-416 2-68 (83)
179 PHA03376 BARF1; Provisional 69.2 12 0.00025 36.5 5.9 97 350-446 21-147 (221)
180 cd05851 Ig3_Contactin-1 Third 67.6 3.8 8.3E-05 34.4 2.1 29 133-161 11-39 (88)
181 cd05889 Ig1_DNAM-1_like First 65.5 11 0.00024 32.5 4.6 27 393-419 59-86 (96)
182 cd05886 Ig1_Nectin-1_like Firs 61.5 6.7 0.00015 34.0 2.5 37 392-429 61-98 (99)
183 cd05745 Ig3_Peroxidasin Third 61.3 5.2 0.00011 32.1 1.7 26 137-162 1-26 (74)
184 cd05739 Ig3_RPTP_IIa_LAR_like 61.1 5.2 0.00011 32.0 1.6 24 138-161 1-24 (69)
185 PF07354 Sp38: Zona-pellucida- 57.4 11 0.00025 38.3 3.6 46 369-414 12-57 (271)
186 cd05747 Ig5_Titin_like M5, fif 55.7 8.8 0.00019 32.2 2.3 30 132-161 12-41 (92)
187 cd05771 IgC_Tapasin_R Tapasin- 53.8 8.1 0.00018 35.3 1.9 36 395-431 2-37 (139)
188 PF08205 C2-set_2: CD80-like C 52.9 20 0.00044 29.6 4.0 24 355-378 14-38 (89)
189 cd07693 Ig1_Robo First immunog 52.9 11 0.00025 31.4 2.5 29 133-161 11-39 (100)
190 cd05771 IgC_Tapasin_R Tapasin- 51.0 32 0.0007 31.2 5.4 24 354-377 52-77 (139)
191 cd05894 Ig_C5_MyBP-C C5 immuno 50.0 9.4 0.0002 31.8 1.5 29 133-161 5-33 (86)
192 cd07698 IgC_MHC_I_alpha3 Class 49.1 29 0.00064 29.2 4.5 62 355-416 14-82 (93)
193 cd05737 Ig_Myomesin_like_C C-t 45.9 12 0.00025 31.5 1.5 29 133-161 11-39 (92)
194 cd04972 Ig_TrkABC_d4 Fourth do 45.8 12 0.00026 31.2 1.5 29 134-162 11-39 (90)
195 cd05719 Ig2_PVR_like Second im 45.0 84 0.0018 26.9 6.7 21 357-377 17-38 (95)
196 cd05870 Ig5_NCAM-2 Fifth immun 44.5 16 0.00035 31.0 2.1 28 133-160 11-38 (98)
197 cd05766 IgC_MHC_II_beta Class 44.5 52 0.0011 28.0 5.3 28 354-381 13-42 (94)
198 cd07696 IgC_CH3 CH3 domain (th 42.8 28 0.00061 29.9 3.4 26 353-378 12-40 (96)
199 cd05728 Ig4_Contactin-2-like F 41.9 16 0.00034 30.2 1.6 30 133-162 9-38 (85)
200 cd05857 Ig2_FGFR Second immuno 40.5 23 0.00049 28.9 2.4 28 134-161 5-32 (85)
201 cd07703 Ig2_Nectin-2_like Seco 39.4 74 0.0016 27.3 5.4 21 357-377 17-38 (95)
202 smart00407 IGc1 Immunoglobulin 39.0 65 0.0014 25.9 4.8 22 358-379 2-25 (75)
203 cd05749 Ig2_Tyro3_like Second 38.7 19 0.00041 29.8 1.6 30 133-162 8-38 (81)
204 KOG3515|consensus 37.9 41 0.0009 39.5 4.7 73 351-426 18-91 (741)
205 KOG1480|consensus 37.8 18 0.00039 42.1 1.7 84 352-436 141-227 (909)
206 cd05845 Ig2_L1-CAM_like Second 37.1 35 0.00076 29.4 3.1 30 131-160 11-41 (95)
207 PHA02633 hypothetical protein; 36.9 29 0.00063 27.5 2.2 24 393-416 17-40 (63)
208 cd04968 Ig3_Contactin_like Thi 36.8 20 0.00043 29.6 1.5 29 133-161 11-39 (88)
209 cd05730 Ig3_NCAM-1_like Third 36.4 21 0.00045 30.0 1.6 29 133-161 13-41 (95)
210 cd05868 Ig4_NrCAM Fourth immun 36.4 20 0.00044 28.9 1.4 24 138-161 1-24 (76)
211 cd05856 Ig2_FGFRL1-like Second 36.2 24 0.00053 28.2 1.9 28 134-161 5-32 (82)
212 cd05764 Ig_2 Subgroup of the i 35.3 30 0.00066 27.3 2.3 22 138-159 1-22 (74)
213 cd05758 Ig5_KIRREL3-like Fifth 35.2 24 0.00051 30.0 1.7 29 133-161 11-40 (98)
214 cd05770 IgC_beta2m Class I maj 35.0 53 0.0011 28.1 3.8 61 354-414 14-80 (93)
215 cd04978 Ig4_L1-NrCAM_like Four 34.9 24 0.00053 27.9 1.7 24 138-161 1-24 (76)
216 cd05848 Ig1_Contactin-5 First 34.7 26 0.00056 29.7 1.8 25 137-161 18-42 (94)
217 cd04974 Ig3_FGFR Third immunog 34.4 26 0.00056 29.3 1.8 23 138-160 1-23 (90)
218 cd05743 Ig_Perlecan_D2_like Im 33.9 23 0.00051 28.6 1.4 23 138-160 1-23 (78)
219 cd05867 Ig4_L1-CAM_like Fourth 33.2 25 0.00055 28.2 1.5 24 138-161 1-24 (76)
220 cd05732 Ig5_NCAM-1_like Fifth 33.0 26 0.00057 29.2 1.7 29 133-161 11-39 (96)
221 cd05773 Ig8_hNephrin_like Eigh 32.4 33 0.00072 29.9 2.2 26 136-161 21-46 (109)
222 cd05876 Ig3_L1-CAM Third immun 31.8 23 0.00051 28.0 1.1 21 141-161 1-21 (71)
223 cd05893 Ig_Palladin_C C-termin 31.4 22 0.00049 28.8 0.9 22 141-162 1-22 (75)
224 cd07704 Ig2_Nectin-3-4_like Se 31.3 2E+02 0.0043 24.9 6.8 29 348-376 9-39 (97)
225 cd05852 Ig5_Contactin-1 Fifth 31.1 35 0.00076 27.4 2.0 24 138-161 1-24 (73)
226 cd05858 Ig3_FGFR-2 Third immun 30.8 33 0.00072 28.5 1.9 23 138-160 1-23 (90)
227 cd05723 Ig4_Neogenin Fourth im 30.0 26 0.00056 27.8 1.0 22 141-162 2-23 (71)
228 cd04969 Ig5_Contactin_like Fif 30.0 34 0.00073 27.1 1.7 24 138-161 1-24 (73)
229 cd05733 Ig6_L1-CAM_like Sixth 29.9 31 0.00067 27.9 1.5 21 141-161 1-21 (77)
230 cd05762 Ig8_MLCK Eighth immuno 29.5 36 0.00077 29.1 1.9 29 133-161 10-38 (98)
231 cd04975 Ig4_SCFR_like Fourth i 29.0 30 0.00065 29.9 1.3 31 132-162 12-43 (101)
232 cd05869 Ig5_NCAM-1 Fifth immun 28.4 31 0.00068 29.2 1.3 25 136-160 15-39 (97)
233 cd05765 Ig_3 Subgroup of the i 28.1 42 0.00092 26.8 2.0 23 138-160 1-23 (81)
234 cd05746 Ig4_Peroxidasin Fourth 27.6 31 0.00066 27.1 1.1 21 141-161 1-21 (69)
235 cd05772 IgC_SIRP Signal-regula 27.5 1.5E+02 0.0033 26.1 5.6 29 353-381 19-49 (111)
236 cd05850 Ig1_Contactin-2 First 27.2 41 0.00088 28.4 1.8 24 138-161 19-42 (94)
237 cd05892 Ig_Myotilin_C C-termin 27.1 30 0.00066 28.1 1.0 21 141-161 1-21 (75)
238 cd05735 Ig8_DSCAM Eight immuno 26.6 46 0.00099 27.7 2.0 24 138-161 1-24 (88)
239 cd05726 Ig4_Robo Fhird immunog 26.2 52 0.0011 27.3 2.3 24 138-161 1-24 (90)
240 cd05768 IgC_CH4 CH4 domain (fo 25.8 88 0.0019 27.1 3.7 26 354-379 15-42 (102)
241 cd05722 Ig1_Neogenin First imm 25.7 46 0.00099 27.9 1.9 27 135-161 11-37 (95)
242 cd05891 Ig_M-protein_C C-termi 25.6 40 0.00088 28.3 1.5 29 132-160 10-38 (92)
243 cd05744 Ig_Myotilin_C_like Imm 24.9 37 0.0008 27.3 1.1 21 141-161 1-21 (75)
244 cd05763 Ig_1 Subgroup of the i 24.8 46 0.00099 26.4 1.6 20 142-161 2-21 (75)
245 cd05767 IgC_MHC_II_alpha Class 23.7 1.2E+02 0.0027 25.8 4.2 26 355-380 15-42 (94)
246 cd05734 Ig7_DSCAM Seventh immu 23.7 41 0.00088 27.1 1.1 21 141-161 1-21 (79)
247 cd05875 Ig6_hNeurofascin_like 23.6 47 0.001 26.9 1.5 22 141-162 1-22 (77)
248 cd05740 Ig_CEACAM_D4 Fourth im 23.3 61 0.0013 27.3 2.2 30 131-161 11-40 (91)
249 cd05874 Ig6_NrCAM Sixth immuno 23.2 48 0.001 26.9 1.4 21 141-161 1-21 (77)
250 cd05724 Ig2_Robo Second immuno 22.4 63 0.0014 26.1 2.1 29 133-161 6-35 (86)
251 cd05721 IgV_CTLA-4 Immunoglobu 22.1 1.4E+02 0.0031 26.7 4.3 64 350-413 8-93 (115)
252 cd05849 Ig1_Contactin-1 First 21.6 60 0.0013 27.4 1.8 24 138-161 19-42 (93)
No 1
>KOG4597|consensus
Probab=99.83 E-value=2.2e-20 Score=194.79 Aligned_cols=252 Identities=23% Similarity=0.357 Sum_probs=192.3
Q ss_pred CCCCCCCC-CC-------CCCcCCCCCCCCCcccCCCccccCCCC-CccCCcccCCCCCc--------------------
Q psy10163 268 LYKEGECR-PQ-------PQNVCADNCKDDADCTGQAKCCPNDCG-YSCSNLFDITTTTT-------------------- 318 (615)
Q Consensus 268 ~~k~g~Cp-~~-------~~~~C~~~C~~dadc~~~~kCC~~~Cg-~~C~~p~~~~~~~~-------------------- 318 (615)
+.++|.|| +. .+++|.++|.+|++|...+|||.|.|| .+||+......+..
T Consensus 36 ~~~pGvh~~~~~p~~~tnaqs~~~r~~~r~~e~~ngek~~~~~g~~~~~ve~r~~~~~k~~~~g~~pea~~~~~~~~qq~ 115 (560)
T KOG4597|consen 36 NSHPGVHPNIKLPNLWTNAQSTCARECTRDQECKNGEKCCYNVGGGLSCVEARVEVGTKFVPDGAEPEALCAQFPCSQQG 115 (560)
T ss_pred CCCCCcCccccCccccccccccccCccCCcccccccchhceecCCchhheeeeccccceecCCCCCccchhccCcccccc
Confidence 46899999 22 789999999999999999999999998 78999755441000
Q ss_pred -----------------------------------------------------------------cCCCCCCCCCCCCCC
Q psy10163 319 -----------------------------------------------------------------TVSPAYPVYTSTPYT 333 (615)
Q Consensus 319 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 333 (615)
.+..++.+++.
T Consensus 116 s~~dif~~~~r~~~~~~~~~eP~~~~~d~~~k~~n~t~cs~aCgKG~q~~iv~C~~~~t~~~~~~~~cettm~ptp---- 191 (560)
T KOG4597|consen 116 SVCDIFDGQPRCTCIDRCEKEPSFTCADDGLKYYNCTMCSEACGKGVQLRIVYCIHGKTWPRVSPDPCETTMAPTP---- 191 (560)
T ss_pred ccccccCCCCCcccccccccCCchhhhhcCceecceEehhhhhcCCceeeeEEEeccccCCCCCCCccccccCCCC----
Confidence 00000000000
Q ss_pred CCCCCCCCCCCCCCCcccccCCCeeeeeecccCCCCCeeeccC-----CceeecCCC--CceEEecCCeEEEeeccccCC
Q psy10163 334 PNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-----GEVSIDGSD--GHYKLTLDGVLQIVGLVRQDA 406 (615)
Q Consensus 334 ~~~~~pp~~~~~~e~~v~~~eg~~~tl~C~~~G~P~P~i~w~k-----~~~~l~~~~--g~~~~~~~gsl~I~~~~~~Ds 406 (615)
...+++..+. .+..-.+-+++..++.|.++|.|.|.|+|++ .++++..+. ++.+..+..+|+|++..+.|+
T Consensus 192 e~e~~c~l~~--cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a 269 (560)
T KOG4597|consen 192 EFEPSCALVD--CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADA 269 (560)
T ss_pred CCCCCccccc--CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCC
Confidence 0001111111 1223345567888999999999999999976 456665443 778888999999999999999
Q ss_pred ceeeecCCCCCCcccccceeeee-cc-------------------------------c----ceeeeeeCCCCceeeecc
Q psy10163 407 GIYVCVAANGIGDPIRKEFNVIV-RG-------------------------------N----YEQWYYDRDTDSCQPFQY 450 (615)
Q Consensus 407 G~Y~C~a~n~~G~p~~~~~~l~V-~~-------------------------------~----~~~wyyd~~~~~C~~F~y 450 (615)
|+|.|.+.++.|+ +.+.+.+.+ .+ + .-+|.||.+-+.|++|..
T Consensus 270 ~w~tCs~rcg~g~-~~rdv~c~s~~ge~a~daads~p~~~~~~~~e~~~cdmgpC~g~~f~tew~~~~~aqcg~~~~~rs 348 (560)
T KOG4597|consen 270 GWYTCSARCGAGF-LRRDVPCSSVKGEGALDAADSCPADEQEKPAECLTCDMGPCTGLTFVTEWSWHLDAQCGDCETTRS 348 (560)
T ss_pred Cceeeccccccce-eeccceeeeecccccccccccCCcccccCchhhcCCCCcccCCccchhhhhhhcccccCCceeeee
Confidence 9999999999998 676666533 11 1 235679999999999999
Q ss_pred CCCCCCCCCcCChHHHHHHhhcCCCCCCCCCCCCCccCccccccCCCCccccCcCCCCCCCCceEEEeCCCCceEEEEec
Q psy10163 451 GGCQGNHNRFNDQWSCQKRCVQNIPPPDPAQTPSTTLAPRQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYG 530 (615)
Q Consensus 451 ~gC~gn~N~F~t~~~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~g~C~~~~~rwyyd~~~~~C~~F~y~ 530 (615)
.+|.||.++|.+.|.|+..|.... ...|.++-..|+| ....||+|.+-+ +|. +
T Consensus 349 v~C~~s~~~~~p~E~C~~a~~sg~---------------------~pad~~pc~~GPC-~~e~rW~~s~ws-qCs----~ 401 (560)
T KOG4597|consen 349 VVCKGSQGRFEPLEACLVACASGP---------------------RPADTRPCAQGPC-PCEPRWAYSPWS-QCS----G 401 (560)
T ss_pred eeecCccccccchhhhhhhccCCC---------------------CCccccccccCCC-CCccceeecchh-hhc----c
Confidence 999999999999999999995321 1357788889999 888999999988 998 8
Q ss_pred cccCCCCCCCChHHHHHhccCCc
Q psy10163 531 GCEGNANRFNTEEQCERLCGEFR 553 (615)
Q Consensus 531 GC~Gn~N~F~s~~~C~~~C~~~~ 553 (615)
||+||.|+|++...|+..|.-.+
T Consensus 402 eCg~g~~~r~vica~~~a~~f~v 424 (560)
T KOG4597|consen 402 ECGGGGNNREVICACEQACPFEV 424 (560)
T ss_pred ccCCCCcceeEEEeeecCCCccc
Confidence 99999999999999999999765
No 2
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=99.47 E-value=6.6e-14 Score=108.21 Aligned_cols=54 Identities=46% Similarity=1.122 Sum_probs=51.9
Q ss_pred CcccCCCccCCCCCCeeeeEeeCCCCceeeeeeCCCCCCCCCCCCHHHHHHhCC
Q psy10163 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCA 99 (615)
Q Consensus 46 ~~C~~~~~~G~C~~~~~rw~yd~~~~~C~~F~y~GC~Gn~N~F~t~~~C~~~C~ 99 (615)
++|.+|++.|.|.+.++|||||+.+++|+.|.|+||+||.|+|.|+++|+++|.
T Consensus 1 ~~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred CcccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 479999999999999999999999999999999999999999999999999994
No 3
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=99.44 E-value=1.2e-13 Score=106.35 Aligned_cols=53 Identities=45% Similarity=1.069 Sum_probs=51.1
Q ss_pred CcccCCCccCCCCCCeeeeEeeCCCCceeeeeeCCCCCCCCCCCCHHHHHHhC
Q psy10163 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARC 98 (615)
Q Consensus 46 ~~C~~~~~~G~C~~~~~rw~yd~~~~~C~~F~y~GC~Gn~N~F~t~~~C~~~C 98 (615)
.+|.+|++.|.|.+.+.|||||+.+++|+.|.|+||+||.|+|.|+++|+++|
T Consensus 1 ~~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred CcccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 37999999999999999999999999999999999999999999999999988
No 4
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=99.41 E-value=3.2e-13 Score=103.79 Aligned_cols=53 Identities=53% Similarity=1.207 Sum_probs=51.1
Q ss_pred cccCCCccCCCCCCeeeeEeeCCCCceeeeeeCCCCCCCCCCCCHHHHHHhCC
Q psy10163 47 ICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCA 99 (615)
Q Consensus 47 ~C~~~~~~G~C~~~~~rw~yd~~~~~C~~F~y~GC~Gn~N~F~t~~~C~~~C~ 99 (615)
+|.+|++.|.|.....|||||..+++|+.|.|+||+||.|+|.|+++|+++|+
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999984
No 5
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=99.38 E-value=5.9e-13 Score=102.86 Aligned_cols=53 Identities=49% Similarity=1.155 Sum_probs=51.0
Q ss_pred CccccCcCCCCCCCCceEEEeCCCCceEEEEeccccCCCCCCCChHHHHHhcc
Q psy10163 498 LCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550 (615)
Q Consensus 498 ~C~~~~~~g~C~~~~~rwyyd~~~~~C~~F~y~GC~Gn~N~F~s~~~C~~~C~ 550 (615)
+|.++++.|.|.....|||||+++++|+.|.|+||+||.|+|.|+++|+++|.
T Consensus 2 ~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 2 VCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred cccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 69999999999999999999999999999999999999999999999999985
No 6
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=99.37 E-value=7.2e-13 Score=102.00 Aligned_cols=52 Identities=46% Similarity=1.119 Sum_probs=50.3
Q ss_pred CccccCcCCCCCCCCceEEEeCCCCceEEEEeccccCCCCCCCChHHHHHhc
Q psy10163 498 LCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549 (615)
Q Consensus 498 ~C~~~~~~g~C~~~~~rwyyd~~~~~C~~F~y~GC~Gn~N~F~s~~~C~~~C 549 (615)
+|.++++.|.|.+...|||||+++++|+.|.|+||+||.|+|.|+++|+++|
T Consensus 2 ~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 2 VCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred cccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 6999999999999999999999999999999999999999999999999987
No 7
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=99.34 E-value=1.6e-12 Score=99.85 Aligned_cols=53 Identities=49% Similarity=1.255 Sum_probs=50.7
Q ss_pred CccccCcCCCCCCCCceEEEeCCCCceEEEEeccccCCCCCCCChHHHHHhcc
Q psy10163 498 LCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550 (615)
Q Consensus 498 ~C~~~~~~g~C~~~~~rwyyd~~~~~C~~F~y~GC~Gn~N~F~s~~~C~~~C~ 550 (615)
+|.+|++.|.|.....|||||+.+++|+.|.|.||++|.|+|.|+++|+++|.
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 48899999999999999999999999999999999999999999999999985
No 8
>KOG4295|consensus
Probab=99.20 E-value=2.1e-11 Score=127.10 Aligned_cols=109 Identities=39% Similarity=0.797 Sum_probs=84.7
Q ss_pred eeccCCCCCCCCCcCChHHHHHHhhcCCCCCCCCC-----------------CCC------CccCccccc---cCCCCcc
Q psy10163 447 PFQYGGCQGNHNRFNDQWSCQKRCVQNIPPPDPAQ-----------------TPS------TTLAPRQEA---ARNDLCF 500 (615)
Q Consensus 447 ~F~y~gC~gn~N~F~t~~~C~~~C~~~~~~~~~~~-----------------~~~------~~~~~~~~~---~~~~~C~ 500 (615)
.|.|.||.+|.|+|.+.++|+..|.... +..+.. .+. ..+...... ....+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 80 (295)
T KOG4295|consen 2 SFKYNGCPGNSNNFFSSEDCQVRCCVGG-PCGGSTSLLLAGNSSPVSSKDPMCPSTYLCVTVLLVSSCLSCCPTKNEICD 80 (295)
T ss_pred CccccCCCCCccceeehhhhceeecccc-CCCcchHHHHhcCcceeeccCCCCcccceeeeehhccccccccCCCCcccC
Confidence 5789999999999999999999998765 211000 000 000111111 4468999
Q ss_pred ccCcCCCCC---CCCceEEEeCCCCceEEEEeccccCCCCCCCChHHHHHhccCCcCCC
Q psy10163 501 LESESGPCT---QQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGEFRAED 556 (615)
Q Consensus 501 ~~~~~g~C~---~~~~rwyyd~~~~~C~~F~y~GC~Gn~N~F~s~~~C~~~C~~~~~~~ 556 (615)
++.+.|.|. ....|||||+.+++|.+|+|+||+||.|+|.|+++|+..|.......
T Consensus 81 ~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~~~~~~ 139 (295)
T KOG4295|consen 81 QPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGSADQPS 139 (295)
T ss_pred CchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcCCCccC
Confidence 999999887 79999999999999999999999999999999999999999875543
No 9
>KOG4295|consensus
Probab=98.91 E-value=1.2e-09 Score=113.75 Aligned_cols=59 Identities=39% Similarity=0.948 Sum_probs=55.9
Q ss_pred CCCcccCCCccCCCC---CCeeeeEeeCCCCceeeeeeCCCCCCCCCCCCHHHHHHhCCCCc
Q psy10163 44 AKDICLQPAVIGDCA---NYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGGT 102 (615)
Q Consensus 44 ~~~~C~~~~~~G~C~---~~~~rw~yd~~~~~C~~F~y~GC~Gn~N~F~t~~~C~~~C~~~~ 102 (615)
..++|.++.+.|.|. +.+.|||||..+++|.+|+|+||+||.|||.|+++|+..|....
T Consensus 75 ~~~~C~~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~~~ 136 (295)
T KOG4295|consen 75 KNEICDQPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGSAD 136 (295)
T ss_pred CCcccCCchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcCCC
Confidence 478999999999977 89999999999999999999999999999999999999998775
No 10
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.67 E-value=3.4e-08 Score=81.17 Aligned_cols=71 Identities=28% Similarity=0.539 Sum_probs=58.9
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
|+.+.|.|.+.|.|.|.|.|.|+...+. ..+++.+..+++|.|.++...|+|.|.|.|.|..|. ......|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l 71 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV-NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVL 71 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc-cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEE
Confidence 5678999999999999999998665543 456788878899999999999999999999999997 4444433
No 11
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.66 E-value=3.3e-08 Score=81.11 Aligned_cols=72 Identities=35% Similarity=0.594 Sum_probs=58.8
Q ss_pred CCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
||+.+.|.|.+.|+|.|.|+|.|+...+.. ..++.+...++|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCC-CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEE
Confidence 578999999999999999999886655542 34555667789999999999999999999999997 4444444
No 12
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.59 E-value=5.4e-08 Score=80.42 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=54.3
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecC--C--eEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD--G--VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~--g--sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
+.|.|.+.|.|.|.|.|.|+...+.....++.+..+ + +|.|..+...|+|.|.|.|.|..|. ......|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L 73 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARL 73 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEE
Confidence 468999999999999999876666544456665433 3 6999999999999999999999997 4444443
No 13
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.59 E-value=7.8e-08 Score=81.61 Aligned_cols=80 Identities=26% Similarity=0.458 Sum_probs=63.7
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEec---CCeEEEeeccccCCceeeecCCCCCCcccccc
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
..+.+.+|+.+.|.|.+.|+|.|.|.|.++...+....+++.+.. ...|.|..+.+.|+|.|.|.|.|..|. ....
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~ 81 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHAS 81 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEE
Confidence 456778999999999999999999999987666654445665543 247999999999999999999999997 4544
Q ss_pred eeee
Q psy10163 425 FNVI 428 (615)
Q Consensus 425 ~~l~ 428 (615)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05894 82 LFVK 85 (86)
T ss_pred EEEE
Confidence 4443
No 14
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.55 E-value=7.3e-08 Score=79.63 Aligned_cols=69 Identities=29% Similarity=0.461 Sum_probs=54.5
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecCC----eEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG----VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~g----sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
++|.|.+.|.|.|.|.|.|+...+.....++.+..++ .|.|..+...|+|.|+|.|.|..|. ......|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L 73 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARL 73 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEE
Confidence 4689999999999999998766665444566655443 5899999999999999999999997 4444443
No 15
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.51 E-value=1.3e-07 Score=77.65 Aligned_cols=72 Identities=38% Similarity=0.551 Sum_probs=59.0
Q ss_pred eeeeecccCCCCCeeeccCCceeecC-CCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDG-SDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~-~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
++|.|.+.|.|.|.|.|.|+...+.. ..+++.....+.|.|..+...|+|.|.|.|.|..|........|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47899999999999999986655542 4567777778899999999999999999999999986566555544
No 16
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.50 E-value=2.7e-07 Score=77.55 Aligned_cols=78 Identities=26% Similarity=0.484 Sum_probs=63.7
Q ss_pred cccccCCCeeeeeecc-cCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccccccee
Q psy10163 349 TVEAEEGNFVTLRCIA-IGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~-~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
.+.+.+|+.+.|.|.+ .|.|.|.|.|.|+...+.....++.+..+++|.|..+...|+|.|.|.+.|..|......+.
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 3456789999999998 79999999998876666555566777778899999999999999999999999974444433
No 17
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.49 E-value=1.9e-07 Score=76.99 Aligned_cols=74 Identities=30% Similarity=0.533 Sum_probs=56.9
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCC-CceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD-GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~-g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
|+.++|.|.+.|.|.|.|+|.++...+.... ........++|.|.++...|+|.|.|.|.|..|. ....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 5678999999999999999988655554322 2133445688999999999999999999999997 555554443
No 18
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.47 E-value=2.7e-07 Score=78.73 Aligned_cols=77 Identities=30% Similarity=0.520 Sum_probs=62.0
Q ss_pred CCeeeeeecccCCCCCeeeccCCcee--e--c---CCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVS--I--D---GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~--l--~---~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
|+.++|.|.+.|.|.|.|.|.|.... + . ...+++.+..++.|.|.++...|+|.|.|.|.|..|. ....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 56889999999999999999874321 1 0 1245777777889999999999999999999999998 6777888
Q ss_pred eeccc
Q psy10163 428 IVRGN 432 (615)
Q Consensus 428 ~V~~~ 432 (615)
.|.+.
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 77653
No 19
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.45 E-value=3.5e-07 Score=77.93 Aligned_cols=76 Identities=28% Similarity=0.459 Sum_probs=61.3
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCCceEEec--C-----CeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL--D-----GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~--~-----gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
|+.++|.|.+.|.|.|.|.|.++...+.....++.+.. . ..|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEE
Confidence 56789999999999999999987766655455665542 1 36888899999999999999999998 6677777
Q ss_pred eecc
Q psy10163 428 IVRG 431 (615)
Q Consensus 428 ~V~~ 431 (615)
.|.+
T Consensus 80 ~V~~ 83 (88)
T cd05735 80 TVQE 83 (88)
T ss_pred EEeC
Confidence 7654
No 20
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.44 E-value=2.6e-07 Score=75.20 Aligned_cols=68 Identities=29% Similarity=0.657 Sum_probs=54.7
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
++|.|.+.|.|.|.|+|.|+...+. ...++.+..++.|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~-~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L 69 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVI-PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQL 69 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECC-CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEE
Confidence 6789999999999999988654443 334566667788999999999999999999999997 4444443
No 21
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.42 E-value=3.7e-07 Score=74.64 Aligned_cols=70 Identities=29% Similarity=0.519 Sum_probs=57.4
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccccccee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
|+.+.|.|.+.|.|.|.++|.++...+. ...++.+..+++|.|.++...|+|.|.|.+.|..|. ....+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT-NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc-cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEE
Confidence 5678999999999999999998766554 345666777789999999999999999999999997 343333
No 22
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.42 E-value=3.5e-07 Score=77.84 Aligned_cols=76 Identities=32% Similarity=0.495 Sum_probs=58.3
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
.+.+.+|+.++|.|.+.|+|.|.|+|.|....+.. ..+ ....++.|.|.++...|+|.|.|.|.|..|. ....+.|
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~-~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l 85 (88)
T cd05851 10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA-TAE-ISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARV 85 (88)
T ss_pred cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC-CCE-EecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 45677899999999999999999999875433321 122 2334568999999999999999999999997 4444443
No 23
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.42 E-value=5.3e-07 Score=73.73 Aligned_cols=71 Identities=28% Similarity=0.506 Sum_probs=56.5
Q ss_pred CCeeeeeecccCCCCCeeeccC-CceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k-~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
|+.+.|.|.+.|.|.|.|.|.+ +...+. ...++.....++|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS-NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec-CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEE
Confidence 5678999999999999999975 444433 345666777889999999999999999999999997 3443333
No 24
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.41 E-value=3.4e-07 Score=75.49 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=53.8
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecCC----eEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG----VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~g----sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
++|.|.+.|.|.|.|.|.|+...+.....++.+...+ +|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARL 73 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEE
Confidence 4689999999999999998776665444555554332 5999999999999999999999997 4433333
No 25
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.40 E-value=4.9e-07 Score=78.02 Aligned_cols=73 Identities=33% Similarity=0.574 Sum_probs=56.2
Q ss_pred cCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeecc-ccCCceeeecCCCCCCcccccce
Q psy10163 353 EEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLV-RQDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 353 ~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~-~~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
.+|+.++|.|.+.|.|.|.|+|.|+...+...........+++|.|..+. ..|+|.|.|.|.|..|......+
T Consensus 17 ~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~ 90 (94)
T cd05848 17 SDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREA 90 (94)
T ss_pred CCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccE
Confidence 35789999999999999999998866666433222234456889998874 69999999999999998544443
No 26
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.40 E-value=4e-07 Score=78.30 Aligned_cols=80 Identities=33% Similarity=0.607 Sum_probs=63.7
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCC-eEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~g-sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
.+.+.+|+.++|.|.+.|.|.|.|.|.++...+.....++.+...+ .|.|..+...|.|.|.|.|.|..|. ....+.|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L 90 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHL 90 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEE
Confidence 3467889999999999999999999988665554433455544444 5999999999999999999999997 5666666
Q ss_pred ee
Q psy10163 428 IV 429 (615)
Q Consensus 428 ~V 429 (615)
.|
T Consensus 91 ~V 92 (95)
T cd05730 91 KV 92 (95)
T ss_pred EE
Confidence 55
No 27
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.39 E-value=3.7e-07 Score=75.42 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=55.2
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecC-CCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDG-SDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~-~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
|+.++|.|.+.|+|.|.|+|.++...+.. .........++.|.|..+...|+|.|.|.|.|..|. ....+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 45688999999999999999886544432 222222334457888999999999999999999998 555555543
No 28
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.39 E-value=5.1e-07 Score=77.40 Aligned_cols=70 Identities=30% Similarity=0.519 Sum_probs=56.4
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEe-c---CCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT-L---DGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~-~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+.+|+.+.|.|.+.|+|.|.|.|.|+...+.. ..++.+. . ..+|.|.++...|+|.|.|.|.|..|.
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL-SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECcc-CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence 45678999999999999999999999886655542 2344433 2 126999999999999999999999997
No 29
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.37 E-value=4.5e-07 Score=75.32 Aligned_cols=71 Identities=31% Similarity=0.590 Sum_probs=55.2
Q ss_pred eeeeecccCCCCCeeeccCCce--ee-c----CCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceeee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEV--SI-D----GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVI 428 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~--~l-~----~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~ 428 (615)
++|.|.+.|.|.|.|.|.+... .. . ...+++.+..+++|.|..+...|+|.|.|.|.|+.|......+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 4789999999999999976321 11 0 1346777777899999999999999999999999998555555443
No 30
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.35 E-value=8.9e-07 Score=76.79 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=57.8
Q ss_pred cccCCCeeeeeecccCCCC-CeeeccC-CceeecCCCCceEEecC----CeEEEeeccccCCceeeecCCCCCCcccccc
Q psy10163 351 EAEEGNFVTLRCIAIGYPI-PVYTWSK-GEVSIDGSDGHYKLTLD----GVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~-P~i~w~k-~~~~l~~~~g~~~~~~~----gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
.+.+|+.++|.|.+.|.|. |.|.|.+ +...+.....++.+... +.|.|..+...|+|.|+|.|.|..|-.....
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 4678999999999999995 7999986 44333333445544332 4799999999999999999999974335555
Q ss_pred eeee
Q psy10163 425 FNVI 428 (615)
Q Consensus 425 ~~l~ 428 (615)
+.|.
T Consensus 91 ~~l~ 94 (96)
T cd05865 91 VNVK 94 (96)
T ss_pred EEEE
Confidence 5544
No 31
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.35 E-value=1.1e-06 Score=75.54 Aligned_cols=81 Identities=30% Similarity=0.570 Sum_probs=59.0
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecC----CCCceEEecCCeEEEeec-----cccCCceeeecCCCCCCc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDG----SDGHYKLTLDGVLQIVGL-----VRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~----~~g~~~~~~~gsl~I~~~-----~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+.+|+.++|.|.+.|+|.|.|.|.|+...+.. ...+..+..++.+.+..+ ...|+|.|.|.|.|..|.
T Consensus 10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~ 89 (100)
T cd07693 10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89 (100)
T ss_pred eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence 45677899999999999999999999886655543 123334445565544433 578999999999999998
Q ss_pred ccccceeeee
Q psy10163 420 PIRKEFNVIV 429 (615)
Q Consensus 420 p~~~~~~l~V 429 (615)
.....+.|.|
T Consensus 90 ~~s~~~~l~v 99 (100)
T cd07693 90 AVSRNASLEV 99 (100)
T ss_pred eecceEEEEe
Confidence 5555555443
No 32
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.35 E-value=4.8e-07 Score=73.18 Aligned_cols=61 Identities=38% Similarity=0.687 Sum_probs=52.6
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.|.|.+.|.|.|.|+|.|+...+. ..+++.+..++.|.|..+...|+|.|.|.|.|..|.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 61 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT-ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY 61 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC-CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc
Confidence 4689999999999999988665543 346777777889999999999999999999999997
No 33
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.35 E-value=6.9e-07 Score=74.13 Aligned_cols=74 Identities=34% Similarity=0.540 Sum_probs=56.1
Q ss_pred CCeeeeeecccCCCCCeeeccCCc-----eeecCC--CCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGE-----VSIDGS--DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~-----~~l~~~--~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
|+.++|.|.+.|.|.|.|+|.|.. .++... .+++.....++|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEEE
Confidence 567899999999999999998742 122211 23444555678999999999999999999999997 5665555
Q ss_pred ee
Q psy10163 428 IV 429 (615)
Q Consensus 428 ~V 429 (615)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 43
No 34
>PF00095 WAP: WAP-type (Whey Acidic Protein) 'four-disulfide core'; InterPro: IPR008197 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Whey acidic protein (WAP) is a major component of the whey fraction of milk, which contains a significant number of different proteins. WAP proteins share limited sequence identity, except for their conserved cysteine-rich regions, known as 4-disulphide core (4-DSC) domains, and the positional conservation of specific residues []. Several non-milk proteins also contain 4-DSC patterns, such as certain serine protease inhibitors. WAP itself appears to have a protease-inhibitor function, as seen with its inhibitory effect on the progression of cancer cells [].; GO: 0030414 peptidase inhibitor activity, 0005576 extracellular region; PDB: 1FLE_I 2REL_A 2Z7F_I 3NGG_B.
Probab=98.34 E-value=1.1e-07 Score=69.80 Aligned_cols=41 Identities=44% Similarity=1.107 Sum_probs=30.2
Q ss_pred CCCCCC--CCCCCcCCCCCCCCCcccCCCccccCCCCCccCCc
Q psy10163 270 KEGECR--PQPQNVCADNCKDDADCTGQAKCCPNDCGYSCSNL 310 (615)
Q Consensus 270 k~g~Cp--~~~~~~C~~~C~~dadc~~~~kCC~~~Cg~~C~~p 310 (615)
|+|+|| +.....|..+|++|+||++.+|||.++||..|++|
T Consensus 1 K~G~CP~~~~~~~~c~~~C~~D~dC~~~~KCC~~~Cg~~C~~P 43 (43)
T PF00095_consen 1 KPGSCPPPSPDSGDCRDECSSDSDCPGGQKCCPNGCGRRCVEP 43 (43)
T ss_dssp SSSB-------SCEESBS-SSGGGSSTT-EEEEESSCEEEE--
T ss_pred CCCcCcCCCCccCcccccCcCccccCCcCeECCCCccCccCcC
Confidence 689999 33667799999999999999999999999999876
No 35
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.34 E-value=7e-07 Score=73.20 Aligned_cols=74 Identities=28% Similarity=0.393 Sum_probs=56.7
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCC-ceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG-HYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g-~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
|+.++|.|.+.|+|.|.|.|.++...+..... .......+.|.|..+...|+|.|.|.|.|..|. ....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 56789999999999999999875554433222 234455678999999999999999999999997 455554443
No 36
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.34 E-value=5.8e-07 Score=72.52 Aligned_cols=67 Identities=28% Similarity=0.545 Sum_probs=53.5
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
++|.|.+.|.|.|.+.|.|+...+ ..+++.+...+.|.|.++...|+|.|+|.|.|..|. ....+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGEL--PKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASL 67 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccC--CCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEE
Confidence 468999999999999998864333 345666677789999999999999999999999997 3443333
No 37
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.34 E-value=9.7e-07 Score=76.57 Aligned_cols=79 Identities=32% Similarity=0.521 Sum_probs=59.2
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCC--ceee-cC---CCCceEEec---CCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKG--EVSI-DG---SDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~--~~~l-~~---~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+.+|+.++|.|.+.|.|.|.|.|.+. ...+ .. ..+++.+.. ..+|.|.++...|+|.|.|.|.|..|.
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 45677899999999999999999999762 2222 11 234555442 247999999999999999999999997
Q ss_pred ccccceeee
Q psy10163 420 PIRKEFNVI 428 (615)
Q Consensus 420 p~~~~~~l~ 428 (615)
....+.|.
T Consensus 90 -~~~~~~l~ 97 (98)
T cd05870 90 -HQKSMYLD 97 (98)
T ss_pred -ceeEEEEe
Confidence 44444443
No 38
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.30 E-value=1.1e-06 Score=75.66 Aligned_cols=71 Identities=32% Similarity=0.588 Sum_probs=55.8
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeecc-ccCCceeeecCCCCCCccccccee
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLV-RQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~-~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
++.++|.|.+.|+|.|.|+|.|+...+.....++. ..++.|.|..+. ..|+|.|.|.|.|..|....+.+.
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~ 90 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-MVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREAT 90 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-EECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEE
Confidence 45799999999999999999987666654445554 456899998875 689999999999999984444433
No 39
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.30 E-value=1.5e-06 Score=74.87 Aligned_cols=79 Identities=30% Similarity=0.513 Sum_probs=61.7
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCC-CCceEEecCCeEEEeec-----cccCCceeeecCCCC-CCcccc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS-DGHYKLTLDGVLQIVGL-----VRQDAGIYVCVAANG-IGDPIR 422 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~-~g~~~~~~~gsl~I~~~-----~~~DsG~Y~C~a~n~-~G~p~~ 422 (615)
+.+.+|+.++|.|.+.|.|.|.|.|.|+...+... ..++.+..++++.|..+ ...|.|.|.|.|.|. .|....
T Consensus 9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s 88 (95)
T cd05722 9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVS 88 (95)
T ss_pred eEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEE
Confidence 44567899999999999999999999876666533 23466677788888776 578999999999999 998545
Q ss_pred cceeee
Q psy10163 423 KEFNVI 428 (615)
Q Consensus 423 ~~~~l~ 428 (615)
+.+.|.
T Consensus 89 ~~~~l~ 94 (95)
T cd05722 89 RTARLT 94 (95)
T ss_pred eeeEEe
Confidence 555443
No 40
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.30 E-value=1.1e-06 Score=75.67 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=54.0
Q ss_pred CCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeecc-ccCCceeeecCCCCCCcccccc
Q psy10163 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLV-RQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~-~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
.|+.++|.|.+.|+|.|.|+|.++...+....+......+++|.|..+. ..|+|.|.|.|.|..|....+.
T Consensus 18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 89 (94)
T cd05850 18 PEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSRE 89 (94)
T ss_pred CCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEE
Confidence 3578999999999999999998866555432222333456889998865 5999999999999999744433
No 41
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.30 E-value=7.4e-07 Score=75.55 Aligned_cols=69 Identities=35% Similarity=0.541 Sum_probs=55.4
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+.+|+.++|.|.+.|+|.|.|+|.+....+. ..... ....+.|.|.++...|+|.|.|.+.|..|.
T Consensus 10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP-SSAEI-SMSGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-CccEE-EEeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 3456789999999999999999999987443322 12222 246689999999999999999999999997
No 42
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.28 E-value=1.3e-06 Score=74.58 Aligned_cols=73 Identities=30% Similarity=0.454 Sum_probs=52.2
Q ss_pred CCeeeeeecccCCCCCeeeccCCc----eeecCCCCc-e--EE---------ecCCeEEEeeccccCCceeeecCCCCCC
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGE----VSIDGSDGH-Y--KL---------TLDGVLQIVGLVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~----~~l~~~~g~-~--~~---------~~~gsl~I~~~~~~DsG~Y~C~a~n~~G 418 (615)
|..++|.|.+.|.|.|.|+|.|+. ..+. ..+. . ++ ...+.|.|.++...|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYG-PDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeC-CCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 467899999999999999998742 1111 1111 1 11 1124789999999999999999999999
Q ss_pred cccccceeeee
Q psy10163 419 DPIRKEFNVIV 429 (615)
Q Consensus 419 ~p~~~~~~l~V 429 (615)
. ....+.|.|
T Consensus 80 ~-~~~sa~L~V 89 (90)
T cd04974 80 P-SHHSAWLTV 89 (90)
T ss_pred c-ccCCEEEEe
Confidence 8 555666554
No 43
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.25 E-value=9.1e-07 Score=72.00 Aligned_cols=70 Identities=33% Similarity=0.605 Sum_probs=52.4
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
++|.|.+.|.|.|.|.|.++...+... ........++|.|..+...|+|.|.|.|.|..|. ....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 468999999999999998754333222 1223345678999999999999999999999997 455554443
No 44
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.25 E-value=2.2e-06 Score=73.41 Aligned_cols=70 Identities=24% Similarity=0.409 Sum_probs=57.8
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEec---CCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+.+|+.+.|.|.+.|+|.|.+.|.++...+.. ..++.+.. .++|.|.++...|+|.|.|.+.|..|.
T Consensus 12 ~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 84 (92)
T cd05747 12 SLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS-SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK 84 (92)
T ss_pred cEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC-CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC
Confidence 46788999999999999999999999886655532 33455443 248999999999999999999999997
No 45
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.24 E-value=1.9e-06 Score=74.10 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=59.5
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCC-ceeecCCCCceEEecCC---eEEEeeccccCCceeeecCCCCCCcccccce
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKG-EVSIDGSDGHYKLTLDG---VLQIVGLVRQDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~-~~~l~~~~g~~~~~~~g---sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
+.+.+|+.++|.|.+.|.|. .+.|.+. ...+. ...++.+..++ .|.|..+...|+|.|.|.|.|..|......+
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 10 VELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred eEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 45778999999999999998 8999863 33332 34567666666 7999999999999999999999997444444
Q ss_pred ee
Q psy10163 426 NV 427 (615)
Q Consensus 426 ~l 427 (615)
.|
T Consensus 88 ~l 89 (92)
T cd05866 88 VL 89 (92)
T ss_pred EE
Confidence 44
No 46
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.23 E-value=2.1e-06 Score=74.69 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=64.4
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEec---CCeEEEeeccccCCceeeecCCCCCCcccccce
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
.+.+.+|+.+.|.|.+.|.|.|.+.|.|+...+... .++.+.. ...|.|..+...|+|.|+|.+.|..|. ....+
T Consensus 9 ~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~-~~~~~ 86 (98)
T cd05762 9 DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS-RQAQV 86 (98)
T ss_pred CEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc-eeEEE
Confidence 356789999999999999999999999877666533 3444332 346999999999999999999999998 66666
Q ss_pred eeeecc
Q psy10163 426 NVIVRG 431 (615)
Q Consensus 426 ~l~V~~ 431 (615)
.|.|.+
T Consensus 87 ~l~V~~ 92 (98)
T cd05762 87 NLTVVD 92 (98)
T ss_pred EEEEec
Confidence 666643
No 47
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.23 E-value=2.1e-06 Score=71.99 Aligned_cols=77 Identities=30% Similarity=0.544 Sum_probs=57.8
Q ss_pred cccCCCeeeeeecccCCCCCeeeccCCceeecCCC--CceEE-ecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD--GHYKL-TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~--g~~~~-~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
.+.+|+.++|.|.+.|.|.|.|.|.|+...+.... ..+.. ....+|.|..+...|+|.|.|.+.|..|. ....+.|
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 83 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHL 83 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEEE
Confidence 46689999999999999999999988655553221 12222 23447889999999999999999999997 5555544
Q ss_pred e
Q psy10163 428 I 428 (615)
Q Consensus 428 ~ 428 (615)
.
T Consensus 84 ~ 84 (85)
T cd05857 84 D 84 (85)
T ss_pred E
Confidence 3
No 48
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.22 E-value=2e-06 Score=75.37 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=62.4
Q ss_pred CCcccccCCCeeeeeecccC-CCCCeeeccCCceeecCCCCceEEec-------CCeEEEeeccccCCceeeecCCCCCC
Q psy10163 347 EPTVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVSIDGSDGHYKLTL-------DGVLQIVGLVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 347 e~~v~~~eg~~~tl~C~~~G-~P~P~i~w~k~~~~l~~~~g~~~~~~-------~gsl~I~~~~~~DsG~Y~C~a~n~~G 418 (615)
...+.+.+|+.+.|.|.+.| .|.|.|.|.|+...+........... ..+|.|..+.+.|+|.|+|.|.|..|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 34567889999999999999 99999999997766653222222222 25799999999999999999999999
Q ss_pred cccccceeeee
Q psy10163 419 DPIRKEFNVIV 429 (615)
Q Consensus 419 ~p~~~~~~l~V 429 (615)
. ....+.|.|
T Consensus 90 ~-~~~t~~L~V 99 (101)
T cd04975 90 S-KSLTFELYV 99 (101)
T ss_pred c-EEEEEEEEE
Confidence 7 454454444
No 49
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.21 E-value=1.4e-06 Score=72.24 Aligned_cols=75 Identities=27% Similarity=0.474 Sum_probs=54.9
Q ss_pred cccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccccccee
Q psy10163 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
....|+.++|.|.+.|.|.|.|.|.++...+.............+|.|.++...|+|.|.|.+.|..|. ....+.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~ 79 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYK 79 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEE
Confidence 455788999999999999999999875444422221111222357999999999999999999999996 444333
No 50
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.21 E-value=2.1e-06 Score=70.46 Aligned_cols=71 Identities=30% Similarity=0.515 Sum_probs=52.0
Q ss_pred eeeeecccCCCCCeeeccCCce--eecCCCCceEEe-cCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEV--SIDGSDGHYKLT-LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~--~l~~~~g~~~~~-~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
+.|.|.+.|.|.|.|+|.|+.. +......++... ..+.|.|.++...|+|.|.|.|.|..|. ....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 4689999999999999987542 122223344433 4568999999999999999999999997 454444443
No 51
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.21 E-value=2e-06 Score=71.14 Aligned_cols=72 Identities=29% Similarity=0.646 Sum_probs=54.7
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEec-CCeEEEeeccccCCceeeecCCCCCCccc-ccceeeee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL-DGVLQIVGLVRQDAGIYVCVAANGIGDPI-RKEFNVIV 429 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~-~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~-~~~~~l~V 429 (615)
++|.|.+.|.|.|.|.|.|+...+....+++.+.. .+.|+|..+...|+|.|.|.|.|..|... .+.+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 47899999999999999886555544444554443 45899999999999999999999999722 34455544
No 52
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.21 E-value=2.2e-06 Score=72.37 Aligned_cols=75 Identities=32% Similarity=0.546 Sum_probs=59.4
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
+.+.+|+.++|.|.+.|.|.|.+.|.++...+.. .+++ ....+.|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 9 ~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~-~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 83 (85)
T cd05728 9 TEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS-ENRI-EVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAEL 83 (85)
T ss_pred cEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC-CCeE-EEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEE
Confidence 4577899999999999999999999886655532 2333 346678999999999999999999999997 4444333
No 53
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.20 E-value=2.3e-06 Score=74.01 Aligned_cols=75 Identities=33% Similarity=0.537 Sum_probs=55.7
Q ss_pred ccCCCeeeeeecccCCCCCeeeccCCceeecC----CCCceEEecC---CeEEEeeccccCCceeeecCCCCCCcccccc
Q psy10163 352 AEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDG----SDGHYKLTLD---GVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 352 ~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~----~~g~~~~~~~---gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
+..|+.++|.|.+.|.|.|.|+|.++...+.. ..+++.+... +.|.|..+...|.|.|.|.|.|..|. ....
T Consensus 14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~ 92 (97)
T cd05869 14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ-DSQS 92 (97)
T ss_pred EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC-eeEE
Confidence 34578999999999999999999875433321 1244444332 47999999999999999999999997 4444
Q ss_pred eee
Q psy10163 425 FNV 427 (615)
Q Consensus 425 ~~l 427 (615)
+.|
T Consensus 93 ~~l 95 (97)
T cd05869 93 MYL 95 (97)
T ss_pred EEE
Confidence 444
No 54
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.20 E-value=2.7e-06 Score=71.94 Aligned_cols=75 Identities=33% Similarity=0.546 Sum_probs=57.6
Q ss_pred CeeeeeecccCCCCC--eeeccCCceeecC--CCCceEE----ecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 356 NFVTLRCIAIGYPIP--VYTWSKGEVSIDG--SDGHYKL----TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 356 ~~~tl~C~~~G~P~P--~i~w~k~~~~l~~--~~g~~~~----~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
+.++|.|.+.|+|.| .|+|.++...+.. ..+++.. ...++|+|.++...|+|.|+|.|.|.+|. ....+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEE
Confidence 368899999999988 5799886655532 2344422 13468999999999999999999999997 6667777
Q ss_pred eecc
Q psy10163 428 IVRG 431 (615)
Q Consensus 428 ~V~~ 431 (615)
.|.+
T Consensus 80 ~V~~ 83 (85)
T cd05854 80 VVRG 83 (85)
T ss_pred EEEC
Confidence 7754
No 55
>smart00217 WAP Four-disulfide core domains.
Probab=98.20 E-value=1.2e-06 Score=65.37 Aligned_cols=42 Identities=40% Similarity=0.877 Sum_probs=36.1
Q ss_pred CCCCCCC-C----CCCcCCCCCCCCCcccCCCccccCCCCCccCCcc
Q psy10163 270 KEGECRP-Q----PQNVCADNCKDDADCTGQAKCCPNDCGYSCSNLF 311 (615)
Q Consensus 270 k~g~Cp~-~----~~~~C~~~C~~dadc~~~~kCC~~~Cg~~C~~p~ 311 (615)
|+|+||. . ..+.|..+|.+|.+|++.+|||.+|||..|+.|+
T Consensus 1 K~G~CP~~~~~~c~~~~c~~~C~~D~~C~~~~KCC~~gCg~~C~~P~ 47 (47)
T smart00217 1 KPGSCPWPTIASCPLGNPPNKCSSDSDCPGVKKCCFNGCGKSCLTPV 47 (47)
T ss_pred CCCcCcCCcccccccCCCCccCcCccccCCCCCcCCCCccchhCCCC
Confidence 6899993 2 2467899999999999999999999999998763
No 56
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.18 E-value=2.8e-06 Score=72.89 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=60.3
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEec-CCeEEEeeccccCCceeeecCCCCCCcccccceeee
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL-DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVI 428 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~-~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~ 428 (615)
+.+.+|+.++|.|.+.|. .|.|.|.++...+. .+++.+.. .++|.|..+...|+|.|.|.|.|..|......+.|.
T Consensus 13 ~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~ 89 (91)
T cd05740 13 QPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV--PPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN 89 (91)
T ss_pred cccccCCcEEEEEEeCCC-CCEEEEEECCEECC--CCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence 467789999999999999 99999987655543 23344443 358999999999999999999999998555555555
Q ss_pred e
Q psy10163 429 V 429 (615)
Q Consensus 429 V 429 (615)
|
T Consensus 90 V 90 (91)
T cd05740 90 V 90 (91)
T ss_pred e
Confidence 4
No 57
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.17 E-value=3e-06 Score=72.84 Aligned_cols=77 Identities=31% Similarity=0.445 Sum_probs=57.9
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecC----CCCceEEec---CCeEEEeeccccCCceeeecCCCCCCcccc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDG----SDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGDPIR 422 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~----~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~ 422 (615)
+.+.+|+.++|.|.+.|.|.|.|.|.+....+.. ..+++.+.. ...|.|.++...|+|.|.|.|.|..|. ..
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~ 89 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG-DQ 89 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC-cE
Confidence 4567899999999999999999999875433321 124554432 237899999999999999999999997 44
Q ss_pred cceee
Q psy10163 423 KEFNV 427 (615)
Q Consensus 423 ~~~~l 427 (615)
..+.|
T Consensus 90 ~s~~l 94 (96)
T cd05732 90 QSMYL 94 (96)
T ss_pred EEEEE
Confidence 44443
No 58
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.17 E-value=3.1e-06 Score=72.62 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=58.3
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEE-ecC---CeEEEeeccccCCceeeecCCCCCCcccccc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKL-TLD---GVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~-~~~---gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
.+.+.+|+.+.|.|.+.|.|.|.|.|.+....+... .++.+ ... .+|.|..+...|+|.|.|.+.|..|. ....
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~ 87 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ETVD 87 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-eeeE
Confidence 467789999999999999999999998765544322 33332 222 27899999999999999999999997 4444
Q ss_pred eee
Q psy10163 425 FNV 427 (615)
Q Consensus 425 ~~l 427 (615)
+.+
T Consensus 88 ~~v 90 (92)
T cd05891 88 VTV 90 (92)
T ss_pred EEE
Confidence 333
No 59
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.17 E-value=2.5e-06 Score=71.84 Aligned_cols=74 Identities=35% Similarity=0.569 Sum_probs=56.4
Q ss_pred eeeeeecccCCCCC--eeeccCCceeecC--CCCceE----EecCCeEEEeeccccCCceeeecCCCCCCcccccceeee
Q psy10163 357 FVTLRCIAIGYPIP--VYTWSKGEVSIDG--SDGHYK----LTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVI 428 (615)
Q Consensus 357 ~~tl~C~~~G~P~P--~i~w~k~~~~l~~--~~g~~~----~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~ 428 (615)
.++|.|.+.|.|.| .+.|.++...+.. ..+++. ....++|.|.++...|+|.|+|.|.|..|. ....+.|.
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~ 80 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADLI 80 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEEE
Confidence 57899999999998 5689876544432 223332 234678999999999999999999999997 66677777
Q ss_pred ecc
Q psy10163 429 VRG 431 (615)
Q Consensus 429 V~~ 431 (615)
|.+
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 765
No 60
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.17 E-value=2.5e-06 Score=72.67 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=57.3
Q ss_pred cccCCCeeeeeecccCCCCCeeeccCCceeecCCCCc--eEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH--YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~--~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
.+.+|+.+.|.|.+.|+|.|.|.|.++...+...... ........|.|..+...|.|.|.|.|.|..|. ....+.|
T Consensus 11 ~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~~~L 88 (90)
T cd04972 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVSVQV 88 (90)
T ss_pred EEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEEEEE
Confidence 4778999999999999999999999866555322221 11122347999999999999999999999997 4444433
No 61
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.17 E-value=3e-06 Score=70.17 Aligned_cols=69 Identities=28% Similarity=0.588 Sum_probs=51.2
Q ss_pred eeeeecccCCCCCeeeccCCceeecC-CCCceEE-ecCCeEEEeeccc----cCCceeeecCCCCCCccccccee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDG-SDGHYKL-TLDGVLQIVGLVR----QDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~-~~g~~~~-~~~gsl~I~~~~~----~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
++|.|.+.|+|.|.|+|.|+...+.. ...++.. ...+.|.|..+.. .|+|.|.|.|.|..|......+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIH 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence 46899999999999999987666543 2334433 3467888887743 68999999999999985444443
No 62
>cd00199 WAP whey acidic protein-type four-disulfide core domains. Members of the family include whey acidic protein, elafin (elastase-specific inhibitor), caltrin-like protein (a calcium transport inhibitor) and other extracellular proteinase inhibitors. A group of proteins containing 8 characteristically-spaced cysteine residuesforming disulphide bonds, have been termed '4-disulphide core' proteins. Protease inhibition occurs by insertion of the inhibitory loop into the active site pocket and interference with the catalytic residues of the protease.
Probab=98.16 E-value=1.4e-06 Score=68.50 Aligned_cols=44 Identities=36% Similarity=0.865 Sum_probs=37.3
Q ss_pred CCCCCCCCCC---CCCcCCCCCCCCCcccCCCccccCCCCCccCCcc
Q psy10163 268 LYKEGECRPQ---PQNVCADNCKDDADCTGQAKCCPNDCGYSCSNLF 311 (615)
Q Consensus 268 ~~k~g~Cp~~---~~~~C~~~C~~dadc~~~~kCC~~~Cg~~C~~p~ 311 (615)
..|+|+||.. ..+.|..+|.+|.+|++.+|||.+|||..|+.|+
T Consensus 14 ~~k~G~CP~~~~~~~~~c~~~C~~D~~C~g~~KCC~~gCg~~C~~P~ 60 (60)
T cd00199 14 VEKPGRCPMVNPPSLGIPPNRCSSDSDCPGDKKCCENGCGKSCLTPV 60 (60)
T ss_pred CcccCcCcCCCccccCcccccCccccccCCCCCcCcCccccccCCCC
Confidence 3489999933 2345899999999999999999999999998874
No 63
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.15 E-value=4e-06 Score=72.67 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=58.1
Q ss_pred cccccCCCeeeeeecccCCCCC-eeeccCCceeecC-CCCceEEecC-------CeEEEeeccccC-CceeeecCCCCCC
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIP-VYTWSKGEVSIDG-SDGHYKLTLD-------GVLQIVGLVRQD-AGIYVCVAANGIG 418 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P-~i~w~k~~~~l~~-~~g~~~~~~~-------gsl~I~~~~~~D-sG~Y~C~a~n~~G 418 (615)
.+.+.+|..++|.|.+.|.|.| .|.|.++...+.. ..+++.+... .+|+|..+...| .|.|.|.|.|..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 3457789999999999999999 5999886655543 3456665533 278999999855 8999999999999
Q ss_pred cccccce
Q psy10163 419 DPIRKEF 425 (615)
Q Consensus 419 ~p~~~~~ 425 (615)
. ....+
T Consensus 90 ~-~~~~~ 95 (98)
T cd05758 90 S-GTAII 95 (98)
T ss_pred c-ccEEE
Confidence 7 44433
No 64
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.11 E-value=4.1e-06 Score=67.94 Aligned_cols=61 Identities=30% Similarity=0.640 Sum_probs=45.7
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
|+.++|.|.+.|+|.|.|.|.|+...+.. ..++ ......|+|.++ .|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~-~~~~-~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK-EDEM-PVGRNVLELTNI--YESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC-ccce-ecCccEEEEecc--ccCeeEEEEEEeCCCE
Confidence 56789999999999999999875544422 1222 223346888886 4899999999999996
No 65
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.10 E-value=4.3e-06 Score=69.31 Aligned_cols=68 Identities=25% Similarity=0.520 Sum_probs=49.0
Q ss_pred eeeeecccCCCCCeeeccCCceeecC-CCCceEE-ecCCeEEEeeccc----cCCceeeecCCCCCCcccccce
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDG-SDGHYKL-TLDGVLQIVGLVR----QDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~-~~g~~~~-~~~gsl~I~~~~~----~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
+.|.|.+.|+|.|.|+|.|+...+.. ...++.+ ..+++|.|..+.. .|.|.|.|.|.|..|......+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence 46899999999999999886655532 2233333 3467888876654 3789999999999998544443
No 66
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.09 E-value=4.9e-06 Score=70.97 Aligned_cols=73 Identities=27% Similarity=0.387 Sum_probs=51.6
Q ss_pred CCeeeeeecccCCCCCeeeccCCc----eeecCCCCc--eEEe-c---------CCeEEEeeccccCCceeeecCCCCCC
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGE----VSIDGSDGH--YKLT-L---------DGVLQIVGLVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~----~~l~~~~g~--~~~~-~---------~gsl~I~~~~~~DsG~Y~C~a~n~~G 418 (615)
|+.++|.|.+.|.|.|.|.|.+.. ..+. ..+. ..+. . ...|+|.++...|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYG-PDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeC-CCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 567899999999999999998631 1111 1121 1111 1 13699999999999999999999999
Q ss_pred cccccceeeee
Q psy10163 419 DPIRKEFNVIV 429 (615)
Q Consensus 419 ~p~~~~~~l~V 429 (615)
. ....+.|.|
T Consensus 80 ~-~~~~a~L~V 89 (90)
T cd05858 80 I-SHHSAWLTV 89 (90)
T ss_pred c-ccceEEEEE
Confidence 7 455554443
No 67
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.08 E-value=7.8e-06 Score=70.13 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=55.1
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccC-CceeecCCCCceEEecC---CeEEEeeccccCCceeeecCCCCCCcccccce
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k-~~~~l~~~~g~~~~~~~---gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
+.+.+|+.+.|.|.+.|.| |.|.|.+ +...+.......++... .+|.|.++...|+|.|.|.|.|..|......+
T Consensus 10 ~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv 88 (92)
T cd04977 10 GEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV 88 (92)
T ss_pred EEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence 4577899999999999998 5999976 33333222222233222 27999999999999999999999776445444
Q ss_pred ee
Q psy10163 426 NV 427 (615)
Q Consensus 426 ~l 427 (615)
.|
T Consensus 89 ~l 90 (92)
T cd04977 89 NL 90 (92)
T ss_pred EE
Confidence 44
No 68
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.07 E-value=7.7e-06 Score=72.58 Aligned_cols=77 Identities=23% Similarity=0.490 Sum_probs=60.2
Q ss_pred cCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEe--c-----CCeEEEeecc-ccCCceeeecCCCCCCcccccc
Q psy10163 353 EEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT--L-----DGVLQIVGLV-RQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 353 ~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~--~-----~gsl~I~~~~-~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
..|..++|.|.+.|+|.|.++|.++...+.....++.+. . .+.|.|..+. ..|.|.|.|.|.|..|. ....
T Consensus 21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~ 99 (109)
T cd05773 21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLD 99 (109)
T ss_pred CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEE
Confidence 457889999999999999999998777665444555432 1 2468888886 58999999999999998 5666
Q ss_pred eeeeec
Q psy10163 425 FNVIVR 430 (615)
Q Consensus 425 ~~l~V~ 430 (615)
+.|.+.
T Consensus 100 i~L~~~ 105 (109)
T cd05773 100 IQLVST 105 (109)
T ss_pred EEEEec
Confidence 666654
No 69
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.06 E-value=6.3e-06 Score=67.35 Aligned_cols=68 Identities=29% Similarity=0.432 Sum_probs=52.0
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCceEEec---CCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
+.|.|.+.|.|.|.+.|.++...+. ...++.+.. ...|.|..+...|+|.|.|.|.|..|. ....+.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 72 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLK-LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINV 72 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcC-CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEE
Confidence 5688999999999999988665553 234444433 347999999999999999999999997 4444433
No 70
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.05 E-value=6.6e-06 Score=69.67 Aligned_cols=75 Identities=28% Similarity=0.457 Sum_probs=59.2
Q ss_pred eeeeeecccCCC--CCeeeccCCceeec--CCCCceEE----ecCCeEEEeeccccCCceeeecCCCCCCcccccceeee
Q psy10163 357 FVTLRCIAIGYP--IPVYTWSKGEVSID--GSDGHYKL----TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVI 428 (615)
Q Consensus 357 ~~tl~C~~~G~P--~P~i~w~k~~~~l~--~~~g~~~~----~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~ 428 (615)
.+.|.|.+.++| .+.|.|.++...|+ ....+|.. ..+++|.|.++...|+|.|+|.|.+.++. ......|.
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L~ 80 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADLI 80 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEEE
Confidence 578999998754 77899998766665 33456655 25678999999999999999999999987 77777777
Q ss_pred eccc
Q psy10163 429 VRGN 432 (615)
Q Consensus 429 V~~~ 432 (615)
|.++
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 7653
No 71
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.03 E-value=7.9e-06 Score=70.55 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=56.7
Q ss_pred ccccCCCeeeeeecccC-----CCCCeeeccCCceee--cCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccc
Q psy10163 350 VEAEEGNFVTLRCIAIG-----YPIPVYTWSKGEVSI--DGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIR 422 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G-----~P~P~i~w~k~~~~l--~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~ 422 (615)
..+.+|+.+.|.|.+.| .|.|.|+|.|+...+ ....+..+...++.|.|..+...|+|.|+|.+.|..|. .+
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~~ 87 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-MK 87 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-EE
Confidence 34568999999999999 799999998754221 11122223335678999999999999999999999887 44
Q ss_pred cceee
Q psy10163 423 KEFNV 427 (615)
Q Consensus 423 ~~~~l 427 (615)
..+.|
T Consensus 88 ~~~~L 92 (94)
T cd05756 88 VSISL 92 (94)
T ss_pred EEEEE
Confidence 44433
No 72
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.99 E-value=7.4e-06 Score=71.71 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEe--------cCCeEEEeeccccCCceeeecCCCCCCccc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT--------LDGVLQIVGLVRQDAGIYVCVAANGIGDPI 421 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~--------~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~ 421 (615)
..+..++.+.|.|.+.|.|.|.|.|.|+...+..+..+.... ...+|.|..+...|+|.|+|.|.|..|. .
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~-~ 91 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV-K 91 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-E
Confidence 456677889999999999999999998766554333222221 1257999999999999999999999887 4
Q ss_pred ccceeeee
Q psy10163 422 RKEFNVIV 429 (615)
Q Consensus 422 ~~~~~l~V 429 (615)
...+.|.|
T Consensus 92 ~~t~~l~V 99 (101)
T cd05859 92 SYTFALQI 99 (101)
T ss_pred EEEEEEEE
Confidence 44444443
No 73
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.99 E-value=7e-06 Score=67.99 Aligned_cols=64 Identities=30% Similarity=0.575 Sum_probs=50.5
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecC---CeEEEeeccccCCceeeecCCCCCCc
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~---gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
|+.++|.|.+.|.|.|.|+|.++...+. ...++.+... +.|.|.++...|+|.|.|.|.|..|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 67 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP-DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGM 67 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC-CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCE
Confidence 5678999999999999999987543332 2244444332 47999999999999999999999987
No 74
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.98 E-value=5.2e-06 Score=67.04 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=48.9
Q ss_pred eeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 359 tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
.|.|.+.|.|.|.++|.|+...+... ...+.|.|..+...|+|.|+|.|.|..|. ..+.+.+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~ 63 (67)
T cd05863 2 KLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISL 63 (67)
T ss_pred EEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEE
Confidence 57899999999999998866555311 13458999999999999999999999996 4444443
No 75
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.98 E-value=1e-05 Score=67.11 Aligned_cols=68 Identities=24% Similarity=0.511 Sum_probs=49.9
Q ss_pred eeeeecccCCCCCeeeccCCceeec-CCCCceEE-ecCCeEEEeeccc----cCCceeeecCCCCCCcccccce
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSID-GSDGHYKL-TLDGVLQIVGLVR----QDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~-~~~g~~~~-~~~gsl~I~~~~~----~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
+.|.|.+.|+|.|.|+|.++...+. ...+++.+ ..+++|.|..+.. .|+|.|.|.|.|..|......+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI 74 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence 3688999999999999998665543 23445544 3567888887642 3689999999999997544433
No 76
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.98 E-value=6.4e-06 Score=66.41 Aligned_cols=69 Identities=30% Similarity=0.537 Sum_probs=50.3
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCCCce-EEecCCeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHY-KLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~-~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
++|.|.+.|.|.|.+.|.+....+. .++. .....+.|.|.++...|+|.|.|.|.|..|. ....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELP--ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECC--CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 4689999999999999987543332 1222 2233458999999999999999999999996 444444433
No 77
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.97 E-value=1.1e-05 Score=66.24 Aligned_cols=72 Identities=32% Similarity=0.554 Sum_probs=55.1
Q ss_pred eeeeecccCCCCCeeeccCCceeecC-CCCceEEecCC-eEEEeeccccCCceeeecCCCCCCcccccceeeeec
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDG-SDGHYKLTLDG-VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~-~~g~~~~~~~g-sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V~ 430 (615)
+.|.|.+.|.|.|.|.|.|+...+.. ...++....++ .|.|..+...|.|.|.|.+.|..|. ....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 35889999999999999875544432 23455555555 5999999999999999999999997 5666666553
No 78
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.97 E-value=1.2e-05 Score=68.74 Aligned_cols=65 Identities=37% Similarity=0.642 Sum_probs=51.3
Q ss_pred CCCeeeeeecccCCCCCeeeccCCceeecC-CCCceEEecCCeEEEeecc-ccCCceeeecCCCCCCc
Q psy10163 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDG-SDGHYKLTLDGVLQIVGLV-RQDAGIYVCVAANGIGD 419 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~-~~g~~~~~~~gsl~I~~~~-~~DsG~Y~C~a~n~~G~ 419 (615)
.++.++|.|.+.|+|.|.|+|.++...+.. ...++ ...++.|.|.++. ..|+|.|.|.+.|..|.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY-SLVGGNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE-EEECCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 456799999999999999999886655532 22333 4456789888876 48999999999999996
No 79
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.96 E-value=8.9e-06 Score=68.22 Aligned_cols=67 Identities=24% Similarity=0.439 Sum_probs=51.4
Q ss_pred cccccCCCeeeeeecccCCCCC-eeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIP-VYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPI 421 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P-~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~ 421 (615)
.+.+.+|+.+.|.|.+.|+|.| .|+|.|+...+... + ....+.|.|..+ .|.|.|.|.|.|..|...
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~---~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP---P-APSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC---C-CCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 4567889999999999999999 79999876555421 1 123456777776 478999999999999743
No 80
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.94 E-value=9.3e-06 Score=66.13 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=48.3
Q ss_pred eeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 359 tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.|.|.+.|.|.|.+.|.|+...+... .+ ......+|.|.++...|+|.|.|.|.|..|.
T Consensus 2 ~l~c~v~g~P~p~v~W~k~g~~l~~~-~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~ 60 (71)
T cd04976 2 RLPVKVKAYPPPEIQWYKNGKLISEK-NR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK 60 (71)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCC-CE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCcc
Confidence 57899999999999998866555422 33 3445678999999999999999999999886
No 81
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.93 E-value=1.4e-05 Score=67.51 Aligned_cols=78 Identities=35% Similarity=0.624 Sum_probs=61.1
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEec---CCeEEEeeccccCCceeeecCCCCCCcccccc
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~---~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
..+.+.+|+.++|.|.+.|.|.|.|.|.++...+.. ..++.+.. ...|.|.++...|+|.|.|.+.|..|. ....
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~~ 85 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE-ATAS 85 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE-EEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE-EEEE
Confidence 356788999999999999999999999887666654 34444432 337999999999999999999999886 4444
Q ss_pred eee
Q psy10163 425 FNV 427 (615)
Q Consensus 425 ~~l 427 (615)
+.|
T Consensus 86 ~~l 88 (90)
T PF07679_consen 86 VNL 88 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 82
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.91 E-value=2.6e-05 Score=67.34 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=58.9
Q ss_pred CcccccCCCeeeeeec-ccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCc-eeeecCCCCCCc
Q psy10163 348 PTVEAEEGNFVTLRCI-AIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAG-IYVCVAANGIGD 419 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~-~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG-~Y~C~a~n~~G~ 419 (615)
..+.+.+|+.+.|.|. ..|.|.|.|.|.+....+....++..+..+|.|.|.++...|+| .|+|.|.+....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 3468889999999996 79999999999764333223467877778899999999999999 799999987543
No 83
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.85 E-value=2.9e-05 Score=64.52 Aligned_cols=67 Identities=25% Similarity=0.538 Sum_probs=53.6
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.+.+|+.++|.|.+.+. .|.|.|.|+...+.. ..++.+ ..++|.|..+...|+|.|.|.+.|..|.
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~-~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE-NNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC-CceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence 346689999999999997 578999987655543 234443 4568999999999999999999998876
No 84
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.83 E-value=2.1e-05 Score=65.92 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=46.2
Q ss_pred eeecccCCCCCeeeccCCceeecCCCCceEE---------ecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 360 LRCIAIGYPIPVYTWSKGEVSIDGSDGHYKL---------TLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 360 l~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~---------~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.|.+.|+|.|.|+|.|+...+......... ...+.|.|..+...|+|.|+|.|.|..|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~ 71 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ 71 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC
Confidence 4688999999999999877666533321111 12346999999999999999999999997
No 85
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.82 E-value=1.5e-05 Score=64.85 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=46.9
Q ss_pred eeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 359 tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.|.+.|.|.|.++|.|+...+... ........|.|..+...|+|.|+|.|.|..|.
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~---~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLN---HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITK 59 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCC---CEEccCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence 47899999999999998865555322 22334557999999999999999999999986
No 86
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.75 E-value=3.2e-05 Score=64.59 Aligned_cols=60 Identities=25% Similarity=0.427 Sum_probs=45.6
Q ss_pred eeecccCCCCCeeeccCCceeecCCCCce---EE----ecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 360 LRCIAIGYPIPVYTWSKGEVSIDGSDGHY---KL----TLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 360 l~C~~~G~P~P~i~w~k~~~~l~~~~g~~---~~----~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.|.+.|+|.|.|+|.|+...|....... .. ...+.|.|..+...|+|.|+|.|.|..|.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~ 69 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE 69 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc
Confidence 46788999999999998776664322111 11 12347999999999999999999999997
No 87
>KOG3513|consensus
Probab=97.73 E-value=0.00015 Score=85.10 Aligned_cols=89 Identities=29% Similarity=0.460 Sum_probs=68.9
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCC-ceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG-HYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g-~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
++.+..|+.+++.|.+.|.|.|.|+|.++..-+...+. .-....+|.|.|.++...|+|.|.|.|.|..|. ..+.+.|
T Consensus 340 d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~-i~anA~L 418 (1051)
T KOG3513|consen 340 DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGT-IYANAEL 418 (1051)
T ss_pred eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccce-EeeeeEE
Confidence 34566789999999999999999999986554542221 224566789999999999999999999999998 7777777
Q ss_pred eecccceeeee
Q psy10163 428 IVRGNYEQWYY 438 (615)
Q Consensus 428 ~V~~~~~~wyy 438 (615)
.|.+..+.+-.
T Consensus 419 ~V~a~~P~f~~ 429 (1051)
T KOG3513|consen 419 KVLASAPVFPL 429 (1051)
T ss_pred EEEccCCCCCC
Confidence 77665443333
No 88
>KOG4597|consensus
Probab=97.72 E-value=4.6e-05 Score=81.19 Aligned_cols=99 Identities=25% Similarity=0.433 Sum_probs=80.8
Q ss_pred cccCCCccCCCCCC----eeeeEeeCCCCceeeeeeCCCCCCCCCCCCHHHHHHhCCCCcccCCCCCCcccccccccCCC
Q psy10163 47 ICLQPAVIGDCANY----VLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGGTFVTSSAAPDQLENRIAVASP 122 (615)
Q Consensus 47 ~C~~~~~~G~C~~~----~~rw~yd~~~~~C~~F~y~GC~Gn~N~F~t~~~C~~~C~~~~~~~~~~~~~~~~~~~~v~~p 122 (615)
-|+- .+.|+|.+. .-+|+||..-+.|++|...+|.||.++|++.+.|+..|....
T Consensus 314 e~~~-cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~-------------------- 372 (560)
T KOG4597|consen 314 ECLT-CDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGP-------------------- 372 (560)
T ss_pred hhcC-CCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCC--------------------
Confidence 3433 678888742 357889999999999999999999999999999999995321
Q ss_pred CccCCCCCCccccccCceeeeeeccCCCCCCceeccCCCccccceecccCCCCCcccCCCCccCCcccccceEeecCCCc
Q psy10163 123 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRGFISANDLCFLESESGPCTQQEAAWYFDRNSFI 202 (615)
Q Consensus 123 p~~~~~~~C~~~~~~g~~v~l~C~~~~~p~p~~~~~~~~~~C~~~~~~~~~~~~~C~~p~~~G~C~~~~~r~yfd~~~~~ 202 (615)
...|.++-..||| .+..||||.+-+ +
T Consensus 373 ----------------------------------------------------~pad~~pc~~GPC-~~e~rW~~s~ws-q 398 (560)
T KOG4597|consen 373 ----------------------------------------------------RPADTRPCAQGPC-PCEPRWAYSPWS-Q 398 (560)
T ss_pred ----------------------------------------------------CCccccccccCCC-CCccceeecchh-h
Confidence 1345667788999 999999999998 8
Q ss_pred cccccCCCCccccchhcc
Q psy10163 203 TMPELTPNTFLFQWTCVI 220 (615)
Q Consensus 203 C~~f~~gN~NnF~s~C~~ 220 (615)
|.-.=-||.|||+..|..
T Consensus 399 Cs~eCg~g~~~r~vica~ 416 (560)
T KOG4597|consen 399 CSGECGGGGNNREVICAC 416 (560)
T ss_pred hccccCCCCcceeEEEee
Confidence 886556899999999543
No 89
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.70 E-value=3e-05 Score=63.49 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=46.7
Q ss_pred eeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCC
Q psy10163 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 359 tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G 418 (615)
.|.|.+.|.|.|.+.|.|+...+.....++. ....+|.|.++...|+|.|+|.+.+...
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH-VDGYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEE-eCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence 4789999999999999987655543334443 3455899999999999999999998643
No 90
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.69 E-value=7.1e-05 Score=65.13 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=58.2
Q ss_pred CCcccccCCCeeeeeecccCCCCCe-eeccCCceeecC-CCCceEEecC-------CeEEEeeccccC-CceeeecCCCC
Q psy10163 347 EPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDG-SDGHYKLTLD-------GVLQIVGLVRQD-AGIYVCVAANG 416 (615)
Q Consensus 347 e~~v~~~eg~~~tl~C~~~G~P~P~-i~w~k~~~~l~~-~~g~~~~~~~-------gsl~I~~~~~~D-sG~Y~C~a~n~ 416 (615)
+..+.+.+|+.+.|.|.+.+.|.|. |.|......++. ..++|.+... ..|.|.++...| .|.|.|.|.|.
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 4456788999999999999999884 677654445543 3578766532 268899998777 68999999999
Q ss_pred CCccccccee
Q psy10163 417 IGDPIRKEFN 426 (615)
Q Consensus 417 ~G~p~~~~~~ 426 (615)
+|. ....+.
T Consensus 88 ~G~-d~~~i~ 96 (98)
T cd05898 88 FGS-GTAIIQ 96 (98)
T ss_pred Ccc-ceEEEE
Confidence 997 344333
No 91
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.69 E-value=4.9e-05 Score=64.65 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=53.8
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCC
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~ 417 (615)
.+.+.+|+.+.|.|.+.+ |.|.|.|.++...+..+.+++. ..++.|+|.++...|+|.|.|.+.+..
T Consensus 5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~-~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL-LYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE-EECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 345678999999999764 7889999987666655445654 466889999999999999999988753
No 92
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.67 E-value=6.5e-05 Score=63.76 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=57.2
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCceeecCC---CCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccce
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS---DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~---~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
.+.+.+|+.++|.|.+.+ |.|.|.|.++...+... ..++.. ..+.|.|.++...|+|.|.|.+.+..+......+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 456778999999999987 88999998754443322 133333 3456999999999999999999876554455555
Q ss_pred eeee
Q psy10163 426 NVIV 429 (615)
Q Consensus 426 ~l~V 429 (615)
.|.|
T Consensus 83 ~l~V 86 (89)
T cd04979 83 SLNV 86 (89)
T ss_pred EEEE
Confidence 5544
No 93
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.60 E-value=7.7e-05 Score=64.55 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=51.4
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCce-eec------CCCCceEEe----cCCeEEEeeccccCCceeeecCCC
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV-SID------GSDGHYKLT----LDGVLQIVGLVRQDAGIYVCVAAN 415 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~-~l~------~~~g~~~~~----~~gsl~I~~~~~~DsG~Y~C~a~n 415 (615)
..+.+.+|+.+.|+|.+.+.|.|.|.|.+... ++. ...+++.+. ...+|.|.++...|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 34678899999999999999999999977332 111 123455433 135899999999999999999765
No 94
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.58 E-value=0.00017 Score=55.29 Aligned_cols=63 Identities=37% Similarity=0.596 Sum_probs=49.0
Q ss_pred CCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCC
Q psy10163 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G 418 (615)
+|+.++|.|.+.+.|.+.+.|.++...+. ...........|.|..+...|+|.|.|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47789999999999999999987544443 2233344556899999999999999999988654
No 95
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.57 E-value=8.7e-05 Score=60.40 Aligned_cols=62 Identities=29% Similarity=0.549 Sum_probs=46.9
Q ss_pred eeeeecccC-CCCCeeeccCCceeecCCCC--ceEEe---cCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 358 VTLRCIAIG-YPIPVYTWSKGEVSIDGSDG--HYKLT---LDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 358 ~tl~C~~~G-~P~P~i~w~k~~~~l~~~~g--~~~~~---~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
++|.|.+.| .|.|.+.|.++...+..... .+.+. ..+.|.|..+...|+|.|.|.|.|..|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence 368999999 99999999886555532221 11121 2347899999999999999999999986
No 96
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.55 E-value=0.00016 Score=59.90 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=50.8
Q ss_pred cccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEE----ecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKL----TLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~----~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+|+.++|.|.+.+.|.|.|.|.++...+... ..+.. .....|.|..+...|.|.|.|.+.|..|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~ 76 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE-HRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECccc-CceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence 4567889999999999999999998755443211 11111 11236888899999999999999998886
No 97
>KOG3513|consensus
Probab=97.51 E-value=0.00015 Score=85.11 Aligned_cols=83 Identities=36% Similarity=0.562 Sum_probs=71.9
Q ss_pred CCCcccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccce
Q psy10163 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEF 425 (615)
Q Consensus 346 ~e~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~ 425 (615)
.+..+.+..|..+++.|...+.|.|.+.|.|+.. .-...+++.+..+|+|.|.++...|+|.|+|.|.|.+|. ...+.
T Consensus 432 ~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~-a~~~~ 509 (1051)
T KOG3513|consen 432 VERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGK-AESTG 509 (1051)
T ss_pred cceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCc-cceEE
Confidence 4566788899999999999999999999998766 345779999999999999999999999999999999998 66665
Q ss_pred eeeec
Q psy10163 426 NVIVR 430 (615)
Q Consensus 426 ~l~V~ 430 (615)
.|.|+
T Consensus 510 ~L~Vk 514 (1051)
T KOG3513|consen 510 NLIVK 514 (1051)
T ss_pred EEEEe
Confidence 55553
No 98
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.49 E-value=0.00014 Score=62.93 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=55.0
Q ss_pred ccccCCCeeeeeec-ccCCCCCeeeccCCceee--cCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCI-AIGYPIPVYTWSKGEVSI--DGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~-~~G~P~P~i~w~k~~~~l--~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.+.+|..+.|.|. ..|.|.|.+.|-++...+ ..+..+++...+|.|.|.++...|+|.|+|.|.|.+..
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 56778999999995 568899999998764322 22233555556899999999999999999999997654
No 99
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.43 E-value=0.00018 Score=60.40 Aligned_cols=66 Identities=26% Similarity=0.486 Sum_probs=51.5
Q ss_pred ccccCCCeeeeeecccC-CCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G-~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.+.+|+.++|.|.+.+ .|.|.|.|.+....+. .+ .....+.|.|..+...|+|.|.|.+.|..|.
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~---~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP---SR-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC---Cc-ccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 45678999999999975 7999999976442221 11 2234578999999999999999999999886
No 100
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.40 E-value=0.00018 Score=60.25 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=46.3
Q ss_pred CCeeeeeecccCC--CCCeeeccCCceeec-C---CCCceE---EecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 355 GNFVTLRCIAIGY--PIPVYTWSKGEVSID-G---SDGHYK---LTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 355 g~~~tl~C~~~G~--P~P~i~w~k~~~~l~-~---~~g~~~---~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
|+.++|.|.+.|. |.|.|.|.+....+. . ...... ......|.|.++...|+|.|.|.+.|..|.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~ 74 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD 74 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc
Confidence 5678999999999 889999975322111 0 000100 012247999999999999999999999886
No 101
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.37 E-value=0.00025 Score=60.84 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=55.6
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCc---eee-c-CCCCceEEecCCeEEEeeccccCCceeeecCC-CCCCccc
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE---VSI-D-GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAA-NGIGDPI 421 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~---~~l-~-~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~-n~~G~p~ 421 (615)
..+.+.+|+.++|.|.. +.|.|.|.|.+.. ... . ...+++. ..+++|.|..+.+.|+|.|.|.+. +..+. .
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~ 80 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQ-T 80 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeE-E
Confidence 34567789999999996 6899999997521 111 1 1223443 456789999999999999999986 56664 4
Q ss_pred ccceeeee
Q psy10163 422 RKEFNVIV 429 (615)
Q Consensus 422 ~~~~~l~V 429 (615)
...+.|.|
T Consensus 81 ~~~~~l~v 88 (91)
T cd05871 81 LAKYTLHV 88 (91)
T ss_pred EEEEEEEE
Confidence 44555554
No 102
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.28 E-value=0.00039 Score=58.49 Aligned_cols=64 Identities=23% Similarity=0.438 Sum_probs=44.4
Q ss_pred CCeeeeeecccCCCCCeeeccCCceeecCCCC---ceEEe---cCCeEEEeeccccCCceeeecCCCCCC
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG---HYKLT---LDGVLQIVGLVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g---~~~~~---~~gsl~I~~~~~~DsG~Y~C~a~n~~G 418 (615)
|+.++|.|.+.+.|.|.|.|.+.......... ...+. ....|.|.++...|+|.|.|.+.+..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 57889999999999999999752211111000 11111 123699999999999999999988654
No 103
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.25 E-value=0.00084 Score=55.79 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=46.4
Q ss_pred ccccCCCeeeeeecccCCCC-CeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCC
Q psy10163 350 VEAEEGNFVTLRCIAIGYPI-PVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~-P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
..+.+|+.++|.|.+.+.|. +.+.|.|+...+. .....|.|.++ ..|+|.|.|.|.+.
T Consensus 10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 35668999999999999986 4699988655442 23457888888 99999999999875
No 104
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.18 E-value=0.0006 Score=58.87 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=51.6
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCC-ceee--c----CCCCceEEe----cCCeEEEeeccccCCceeeecCCCC
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKG-EVSI--D----GSDGHYKLT----LDGVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~-~~~l--~----~~~g~~~~~----~~gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
.+.+.+|+.++|.|.+.+.|.|.|.|.+. ..++ + ...+++... ...+|+|.++...|+|.|.|.+...
T Consensus 6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred eEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 46788999999999999999999999652 1111 1 134566543 2347999999999999999998764
No 105
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.10 E-value=0.00049 Score=59.16 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=53.0
Q ss_pred ccccCCCeeeeeecccC-----CCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCIAIG-----YPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G-----~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
..+.+|....|.|++.+ +|.|.|.|.|+...+..... .+...+.|.|..+...|+|.|+|.+.+..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~--~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK--RFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc--EEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 35667889999998764 36889999987766653332 2237789999999999999999999987665
No 106
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.06 E-value=0.00065 Score=55.68 Aligned_cols=62 Identities=29% Similarity=0.576 Sum_probs=45.5
Q ss_pred eeeeecccC-CCCCeeeccCCceeecCC---CCceEEe---cCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 358 VTLRCIAIG-YPIPVYTWSKGEVSIDGS---DGHYKLT---LDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 358 ~tl~C~~~G-~P~P~i~w~k~~~~l~~~---~g~~~~~---~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.|+|.+.+ .|.|.+.|.++...+... ..++.+. ..++|.|.++...|+|.|.|.+.|..|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 368999874 688999998755444321 1223322 2357999999999999999999999886
No 107
>KOG4194|consensus
Probab=96.94 E-value=0.0011 Score=73.19 Aligned_cols=83 Identities=27% Similarity=0.432 Sum_probs=65.0
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCce--eecCCCCc-eEEecCCeEEEeeccccCCceeeecCCCCCCcccccc
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV--SIDGSDGH-YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~--~l~~~~g~-~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~ 424 (615)
.++....|..+-|.|.+.|.|.|.|.|+|+.. +....+.+ ++.-.+..+-|.++...|+|.|+|.|.|..|. .++.
T Consensus 620 ~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isan 698 (873)
T KOG4194|consen 620 EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISAN 698 (873)
T ss_pred ccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccc-eeec
Confidence 45667788999999999999999999998432 33323333 34456678999999999999999999999998 7777
Q ss_pred eeeeecc
Q psy10163 425 FNVIVRG 431 (615)
Q Consensus 425 ~~l~V~~ 431 (615)
..|.|-+
T Consensus 699 AtL~V~e 705 (873)
T KOG4194|consen 699 ATLTVLE 705 (873)
T ss_pred eEEEEec
Confidence 7776643
No 108
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.86 E-value=0.0025 Score=54.64 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=51.7
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCC--ceee-c----CCCCceEEec----CCeEEEeeccccCCceeeecCCCC
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKG--EVSI-D----GSDGHYKLTL----DGVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~--~~~l-~----~~~g~~~~~~----~gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
..+.+.+|+.++|.|.+.+.|.|.+.|.+. ..++ . ...+++.... ..+|+|.++...|+|.|.|.+...
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 456788999999999999999999999641 1111 1 1235665532 247999999999999999998765
Q ss_pred C
Q psy10163 417 I 417 (615)
Q Consensus 417 ~ 417 (615)
.
T Consensus 85 ~ 85 (95)
T cd05717 85 P 85 (95)
T ss_pred C
Confidence 3
No 109
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.81 E-value=0.0015 Score=54.84 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=52.0
Q ss_pred cccCCCeeeeeeccc-CCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccccceee
Q psy10163 351 EAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~-G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l 427 (615)
.+.+|+.++|+|.+. +.|.+.+.|.|+...+.. ......|.|..+...|+|.|.|.+.+..+.-..+.+.+
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i 81 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI 81 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEE
Confidence 467899999999986 466778999875433211 11245799999999999999999999887644444433
No 110
>KOG4802|consensus
Probab=96.75 E-value=0.0008 Score=70.83 Aligned_cols=47 Identities=32% Similarity=0.870 Sum_probs=41.3
Q ss_pred CCCCCCC-CCCCCc----CCCCCCCCCcccCCCccccCCCCCccCCcccCCC
Q psy10163 269 YKEGECR-PQPQNV----CADNCKDDADCTGQAKCCPNDCGYSCSNLFDITT 315 (615)
Q Consensus 269 ~k~g~Cp-~~~~~~----C~~~C~~dadc~~~~kCC~~~Cg~~C~~p~~~~~ 315 (615)
.|+|-|| ...+|+ |-..|..|-+|++..|||++|||.+|+.|.....
T Consensus 91 ~KqGdCPa~ekqSgfaaaCvesCqvD~ECpevqKCcssgCgptcqvPktl~k 142 (516)
T KOG4802|consen 91 VKQGDCPAPEKQSGFAAACVESCQVDHECPEVQKCCSSGCGPTCQVPKTLYK 142 (516)
T ss_pred cCCCCCCCcccccchHHHHHHhhcccccCccchhcccCCCCCceeccccccc
Confidence 3899999 666774 9999999999999999999999999999976553
No 111
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.54 E-value=0.0016 Score=51.06 Aligned_cols=58 Identities=33% Similarity=0.532 Sum_probs=39.7
Q ss_pred CCeeeeeecc-cCCCCCeeeccCCceeecCCCCceEEecC-C----eEEEeeccccCCceeeecC
Q psy10163 355 GNFVTLRCIA-IGYPIPVYTWSKGEVSIDGSDGHYKLTLD-G----VLQIVGLVRQDAGIYVCVA 413 (615)
Q Consensus 355 g~~~tl~C~~-~G~P~P~i~w~k~~~~l~~~~g~~~~~~~-g----sl~I~~~~~~DsG~Y~C~a 413 (615)
|+.++|.|.+ .+.|.+.+.|.++...+... ........ . .|.|..+...|+|.|+|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc-ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999 88889999997643221100 11111111 1 2999999999999999974
No 112
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.47 E-value=0.0045 Score=53.41 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=48.4
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCc-e-eec---------C--CCCceEEe----cCC--eEEEeeccccCCceee
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE-V-SID---------G--SDGHYKLT----LDG--VLQIVGLVRQDAGIYV 410 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~-~-~l~---------~--~~g~~~~~----~~g--sl~I~~~~~~DsG~Y~ 410 (615)
|.+.+|+.++|.|.+.+.|.+.|.|.+.. . +++ . ..+++... ..+ +|.|.++...|+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45678999999999999999999996311 1 111 0 01121111 122 5999999999999999
Q ss_pred ecCCCCCCc
Q psy10163 411 CVAANGIGD 419 (615)
Q Consensus 411 C~a~n~~G~ 419 (615)
|.+.+..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 998886543
No 113
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.45 E-value=0.0062 Score=51.49 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=52.2
Q ss_pred CCeeeeeecccCCCCCeeeccCCce-----ee-----------c-CCCCceEEecCCeEEEeeccccCCceeeecCCCCC
Q psy10163 355 GNFVTLRCIAIGYPIPVYTWSKGEV-----SI-----------D-GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P~i~w~k~~~-----~l-----------~-~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~ 417 (615)
|+.++|.|.........|.|.+... .+ . .-.++..+..+++|.|.++...|+|.|.|......
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 5788999988877777899966221 11 0 11256677778999999999999999999877665
Q ss_pred Ccccccceee
Q psy10163 418 GDPIRKEFNV 427 (615)
Q Consensus 418 G~p~~~~~~l 427 (615)
+.....++.|
T Consensus 81 ~~~~~~~~~l 90 (92)
T cd05741 81 GVTENAKFFL 90 (92)
T ss_pred CcEEEEEEEE
Confidence 6544444443
No 114
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.33 E-value=0.014 Score=47.11 Aligned_cols=69 Identities=33% Similarity=0.617 Sum_probs=52.3
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCC-ceeecCCCCceEEecC---CeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKG-EVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~-~~~l~~~~g~~~~~~~---gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.+.+|+.++|.|.+.+.+.+.+.|.+. ...+. ...++.+... .+|.|.++...|.|.|.|.+.+..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4566899999999999999999999764 33222 2344444444 57999999999999999999877665
No 115
>smart00409 IG Immunoglobulin.
Probab=96.33 E-value=0.014 Score=47.11 Aligned_cols=69 Identities=33% Similarity=0.617 Sum_probs=52.3
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCC-ceeecCCCCceEEecC---CeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKG-EVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~-~~~l~~~~g~~~~~~~---gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.+.+|+.++|.|.+.+.+.+.+.|.+. ...+. ...++.+... .+|.|.++...|.|.|.|.+.+..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4566899999999999999999999764 33222 2344444444 57999999999999999999877665
No 116
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=96.30 E-value=0.0037 Score=50.78 Aligned_cols=61 Identities=38% Similarity=0.629 Sum_probs=47.0
Q ss_pred cccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
.+.+|+.++|.|.+.++|.+.+.|.++...+.. ....+.|..+...|.|.|.|.+.++.+.
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~g~y~C~~~~~~~~ 70 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS--------SQNGLFIPNVSPEDSGNYTCRASNGSGS 70 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEE--------ESSEEEESSEEGGGTEEEEEEEEETTEE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeee--------eeeeeeeeeeccccCEEEEEEEEeCCCC
Confidence 466899999999999999999999876544431 1222566778889999999999886553
No 117
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=96.26 E-value=0.005 Score=61.95 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=49.9
Q ss_pred cccCCCeeeeeeccc-----CCCCCeeeccCCceeecCCCCceEEecC-CeEEEeeccccCCceeeecCCCC
Q psy10163 351 EAEEGNFVTLRCIAI-----GYPIPVYTWSKGEVSIDGSDGHYKLTLD-GVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~-----G~P~P~i~w~k~~~~l~~~~g~~~~~~~-gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
.+.+|..++|.|.+. +.|.|.|+|.|+...+. ...++.+..+ +.|.|.++...|+|.|.|.+.-.
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~-~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL-YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 456789999999986 45789999988665554 2345554443 47999999999999999998754
No 118
>KOG4221|consensus
Probab=95.98 E-value=0.015 Score=69.09 Aligned_cols=66 Identities=29% Similarity=0.452 Sum_probs=58.0
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCC
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n 415 (615)
..+.+|+.++|.|-+.|.|.|.|.|-++...+..+.-++++...++|.|.++...|+|.|+|.|.|
T Consensus 247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred cccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence 356689999999999999999999988776666555677778788999999999999999999998
No 119
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=95.93 E-value=0.0085 Score=60.30 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=56.1
Q ss_pred cccccCCCeeeeeecccCCCC-----------CeeeccCCceee---cCCCC--------ceEEecCCeEEEeeccccCC
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPI-----------PVYTWSKGEVSI---DGSDG--------HYKLTLDGVLQIVGLVRQDA 406 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~-----------P~i~w~k~~~~l---~~~~g--------~~~~~~~gsl~I~~~~~~Ds 406 (615)
.+.+.+|+.+.|+|.+.+.|. +.|.|.|..... +.+.. .-....+++|.|.++...|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 467789999999999988654 489998854331 11111 00012356899999999999
Q ss_pred ceeeecCCCCCCcccccceeeee
Q psy10163 407 GIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 407 G~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
|.|+|.+.|..+. ....+.|.|
T Consensus 111 G~Y~C~a~N~~~~-~~~~i~L~V 132 (227)
T PHA02826 111 GIYICTISSGNIC-EESTIRLTF 132 (227)
T ss_pred EEEEEEEEECCcc-eEEEEEEEE
Confidence 9999999998775 444455555
No 120
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=95.88 E-value=0.013 Score=49.54 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=43.5
Q ss_pred CCeeeeeecccCCCCC--eeeccCCceee---cCCCC-ceE----EecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 355 GNFVTLRCIAIGYPIP--VYTWSKGEVSI---DGSDG-HYK----LTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P--~i~w~k~~~~l---~~~~g-~~~----~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
|+.++|.|.+.++|.+ .+.|......+ ..... +.. ......|.|.++...|+|.|+|.|.|..|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~ 75 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMI 75 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceE
Confidence 5678999999987644 67996532211 00010 111 112347999999999999999999998775
No 121
>PHA02785 IL-beta-binding protein; Provisional
Probab=95.86 E-value=0.013 Score=62.26 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=54.9
Q ss_pred cccccCCCeeeeeecc-----cCCCCCeeeccCCceeecCCCCceEEecCC-eEEEeeccccCCceeeecCCCCCCcccc
Q psy10163 349 TVEAEEGNFVTLRCIA-----IGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-VLQIVGLVRQDAGIYVCVAANGIGDPIR 422 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~-----~G~P~P~i~w~k~~~~l~~~~g~~~~~~~g-sl~I~~~~~~DsG~Y~C~a~n~~G~p~~ 422 (615)
...+.+|+.+.|+|.+ .|.|.|.|+|.|+... ..+......+ .|.|..+...|+|.|.|.+.|..|. ..
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~----~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~ 109 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGAD----NDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DM 109 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCc----cceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eE
Confidence 3456689999999997 6999999999985321 1123333344 4778888999999999999999875 34
Q ss_pred cceeeee
Q psy10163 423 KEFNVIV 429 (615)
Q Consensus 423 ~~~~l~V 429 (615)
..+.|.|
T Consensus 110 ~s~~L~V 116 (326)
T PHA02785 110 MSLNLTI 116 (326)
T ss_pred EEEEEEE
Confidence 4444444
No 122
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=95.78 E-value=0.025 Score=49.57 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=51.5
Q ss_pred cccccCCCeeeeeeccc-----------CCCCCeeeccCCceeecCCC-----CceEEecCCeEEEeeccccCCceeeec
Q psy10163 349 TVEAEEGNFVTLRCIAI-----------GYPIPVYTWSKGEVSIDGSD-----GHYKLTLDGVLQIVGLVRQDAGIYVCV 412 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~-----------G~P~P~i~w~k~~~~l~~~~-----g~~~~~~~gsl~I~~~~~~DsG~Y~C~ 412 (615)
.+.+.+|+.+.|+|.+. ....-.|+|-|+..-+..+. +..+...+..|.|..+..+|+|.|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 46788999999999873 22344789987642222111 234566778999999999999999999
Q ss_pred CCCCCCc
Q psy10163 413 AANGIGD 419 (615)
Q Consensus 413 a~n~~G~ 419 (615)
+.|+...
T Consensus 89 ~rN~t~C 95 (104)
T cd05896 89 LRNSTYC 95 (104)
T ss_pred ECCCCcc
Confidence 9988654
No 123
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=95.64 E-value=0.031 Score=49.28 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=49.9
Q ss_pred cccCCCeeeeeecccCCCCCeeeccCCce------e--ecC----------CCCceEEecCCeEEEeeccccCCceeeec
Q psy10163 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEV------S--IDG----------SDGHYKLTLDGVLQIVGLVRQDAGIYVCV 412 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P~P~i~w~k~~~------~--l~~----------~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~ 412 (615)
.+.+|+.++|.|.......-.|+|.|+.. + +.. -.|+..+..+|+|.|.++...|+|.|.|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 35589999999876554445899987521 1 111 13777888899999999999999999998
Q ss_pred CCCCC
Q psy10163 413 AANGI 417 (615)
Q Consensus 413 a~n~~ 417 (615)
..+..
T Consensus 89 v~~~~ 93 (105)
T cd05774 89 TITTN 93 (105)
T ss_pred EEeCC
Confidence 76654
No 124
>KOG4222|consensus
Probab=95.64 E-value=0.017 Score=68.19 Aligned_cols=83 Identities=33% Similarity=0.551 Sum_probs=62.9
Q ss_pred CCcccccCCCeeeeeecccCCCCCeeeccCCc--eeecCCCCceEEecCCeEEEeec-----cccCCceeeecCCCCCCc
Q psy10163 347 EPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE--VSIDGSDGHYKLTLDGVLQIVGL-----VRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 347 e~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~--~~l~~~~g~~~~~~~gsl~I~~~-----~~~DsG~Y~C~a~n~~G~ 419 (615)
..++.+.-++.++|.|.+.|.|.|+|.|-|+. ++.+-...+.+++.+|+|.+..+ ...|.|.|.|.|+|.+|.
T Consensus 38 p~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~ 117 (1281)
T KOG4222|consen 38 PHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGE 117 (1281)
T ss_pred chhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccce
Confidence 34556677889999999999999999998743 33333445667788888877765 234999999999999998
Q ss_pred ccccceeeee
Q psy10163 420 PIRKEFNVIV 429 (615)
Q Consensus 420 p~~~~~~l~V 429 (615)
.+.....|.+
T Consensus 118 avSr~a~L~v 127 (1281)
T KOG4222|consen 118 AVSRGASLIV 127 (1281)
T ss_pred eeecCceEEE
Confidence 7777655543
No 125
>PHA02785 IL-beta-binding protein; Provisional
Probab=95.37 E-value=0.02 Score=60.84 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=53.3
Q ss_pred cccccCCCeeeeeecccCCCCC---eeeccCCceeecCC----CCceEEe-----------cCCeEEEeeccccCCceee
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIP---VYTWSKGEVSIDGS----DGHYKLT-----------LDGVLQIVGLVRQDAGIYV 410 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P---~i~w~k~~~~l~~~----~g~~~~~-----------~~gsl~I~~~~~~DsG~Y~ 410 (615)
.+.+.+|..++|.|.+.|.|.| .|.|.++...++.. .+++.+. ..+.|.|..+...|+|.|.
T Consensus 229 ~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~ 308 (326)
T PHA02785 229 GVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFT 308 (326)
T ss_pred cEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeE
Confidence 3455679999999999999874 89998866555321 2333322 1357999999999999999
Q ss_pred ecCCCCCCc
Q psy10163 411 CVAANGIGD 419 (615)
Q Consensus 411 C~a~n~~G~ 419 (615)
|.|.|..|.
T Consensus 309 C~A~n~~~~ 317 (326)
T PHA02785 309 CMAFTIPSI 317 (326)
T ss_pred EEEEeccCc
Confidence 999998764
No 126
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.37 E-value=0.041 Score=49.05 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=50.5
Q ss_pred CCeeeeeecccCCC------------CCeeeccCCc-----eeec---------CC-CCceEEec------CCeEEEeec
Q psy10163 355 GNFVTLRCIAIGYP------------IPVYTWSKGE-----VSID---------GS-DGHYKLTL------DGVLQIVGL 401 (615)
Q Consensus 355 g~~~tl~C~~~G~P------------~P~i~w~k~~-----~~l~---------~~-~g~~~~~~------~gsl~I~~~ 401 (615)
|+.++|.|...... .+.|.|.|.. .++. .. .+|+.+.. +.+|+|.++
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 77899999776543 4689997631 2221 11 14555432 458999999
Q ss_pred cccCCceeeecCCCCCCcccccceeeeecc
Q psy10163 402 VRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 402 ~~~DsG~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
...|+|.|.|....+... -...+.|.|+|
T Consensus 82 ~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~g 110 (112)
T cd05900 82 RSNDSGTYRCEVMHGIED-NYDTVEVQVKG 110 (112)
T ss_pred ccccCEEEEEEEecCCCC-ceeEEEEEEEe
Confidence 999999999998876555 34445555554
No 127
>KOG4222|consensus
Probab=95.32 E-value=0.031 Score=66.10 Aligned_cols=90 Identities=29% Similarity=0.492 Sum_probs=67.1
Q ss_pred cccccCCCeeeeeec-ccCCCCCeeeccCCceeec-CCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccccccee
Q psy10163 349 TVEAEEGNFVTLRCI-AIGYPIPVYTWSKGEVSID-GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~-~~G~P~P~i~w~k~~~~l~-~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
++++..|+.++|.|. -.|.|.|.+.|.|+...++ .....+.+..+|.|.|.++...|+|.|.|++.|.+|.-.+....
T Consensus 140 d~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~ 219 (1281)
T KOG4222|consen 140 DVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPAR 219 (1281)
T ss_pred cccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccce
Confidence 466677899999995 4599999999988554444 34567778899999999999999999999999999973333333
Q ss_pred eeecccceeeeeeC
Q psy10163 427 VIVRGNYEQWYYDR 440 (615)
Q Consensus 427 l~V~~~~~~wyyd~ 440 (615)
|.| ....||...
T Consensus 220 lsv--~e~P~f~~r 231 (1281)
T KOG4222|consen 220 LSV--QEKPWFWKR 231 (1281)
T ss_pred eee--ccCCccccc
Confidence 333 334455433
No 128
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=95.24 E-value=0.028 Score=49.06 Aligned_cols=76 Identities=33% Similarity=0.415 Sum_probs=50.3
Q ss_pred CCeeeeeecccCCC------CCeeeccCCc-------eeecCCC----------CceEE----ecCCeEEEeeccccCCc
Q psy10163 355 GNFVTLRCIAIGYP------IPVYTWSKGE-------VSIDGSD----------GHYKL----TLDGVLQIVGLVRQDAG 407 (615)
Q Consensus 355 g~~~tl~C~~~G~P------~P~i~w~k~~-------~~l~~~~----------g~~~~----~~~gsl~I~~~~~~DsG 407 (615)
|+.++|.|.....+ .+.|.|.|.. .++-... ++..+ ..+.+|+|.++...|+|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 67899999876653 5689997641 1111011 11111 12458999999999999
Q ss_pred eeeecCCCCCCcccccceeeeecc
Q psy10163 408 IYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 408 ~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
.|.|...++.+. ....+.|.|++
T Consensus 82 ~Y~C~v~~~~~~-~~~~v~L~V~~ 104 (106)
T cd05714 82 RYRCEVIDGIED-EQDTVELEVRG 104 (106)
T ss_pred EEEEEEEcCCCc-eEEEEEEEEEE
Confidence 999998877665 45666677755
No 129
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=95.16 E-value=0.041 Score=45.99 Aligned_cols=61 Identities=18% Similarity=0.409 Sum_probs=44.0
Q ss_pred eeeeeccc-CCCCCeeeccCCceeecCC-----CCceEEecCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 358 VTLRCIAI-GYPIPVYTWSKGEVSIDGS-----DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 358 ~tl~C~~~-G~P~P~i~w~k~~~~l~~~-----~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
+.|.|.+. ++|.+.|+|.++...|... .++ .+...++|.+......|.+.|+|-|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~-~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGK-TVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCc-eEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 56889765 8899999998876666331 111 1223456777777888888999999998775
No 130
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=95.12 E-value=0.054 Score=44.86 Aligned_cols=60 Identities=27% Similarity=0.409 Sum_probs=36.9
Q ss_pred eeeeecccC-CCCCeeeccCCceeecCCCCceEEecCC-------eEEEeeccccCCceeeecCCCCC
Q psy10163 358 VTLRCIAIG-YPIPVYTWSKGEVSIDGSDGHYKLTLDG-------VLQIVGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 358 ~tl~C~~~G-~P~P~i~w~k~~~~l~~~~g~~~~~~~g-------sl~I~~~~~~DsG~Y~C~a~n~~ 417 (615)
+.|.|.+.| .|.|.|+|.++...+...........++ .|.|......|.+.|.|.+.+..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 578999987 6999999987655443211111111122 34444444556779999998764
No 131
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.10 E-value=0.034 Score=48.50 Aligned_cols=77 Identities=31% Similarity=0.400 Sum_probs=52.5
Q ss_pred CCCeeeeeecccCCC------CCeeeccCCc-------e-eec-C--------CCCceEEec----CCeEEEeeccccCC
Q psy10163 354 EGNFVTLRCIAIGYP------IPVYTWSKGE-------V-SID-G--------SDGHYKLTL----DGVLQIVGLVRQDA 406 (615)
Q Consensus 354 eg~~~tl~C~~~G~P------~P~i~w~k~~-------~-~l~-~--------~~g~~~~~~----~gsl~I~~~~~~Ds 406 (615)
.|+.++|.|.....| ...|.|.|.. . ++. . -.+++.+.. +.+|+|.++...|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 377899999876553 4569997631 1 111 0 124555432 34799999999999
Q ss_pred ceeeecCCCCCCcccccceeeeecc
Q psy10163 407 GIYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 407 G~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
|.|.|...++.+. ....+.|.|++
T Consensus 81 G~Y~C~v~~~~~~-~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLED-ESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccc-eEEEEEEEEEE
Confidence 9999998887776 56667777764
No 132
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=94.97 E-value=0.037 Score=47.81 Aligned_cols=77 Identities=30% Similarity=0.283 Sum_probs=51.2
Q ss_pred cCCCeeeeeecccC-CCCCeeeccCCceee--cCC----------C----CceEEec-CCeEEEeeccccCCceeeecCC
Q psy10163 353 EEGNFVTLRCIAIG-YPIPVYTWSKGEVSI--DGS----------D----GHYKLTL-DGVLQIVGLVRQDAGIYVCVAA 414 (615)
Q Consensus 353 ~eg~~~tl~C~~~G-~P~P~i~w~k~~~~l--~~~----------~----g~~~~~~-~gsl~I~~~~~~DsG~Y~C~a~ 414 (615)
.+|+.++|.|.... .....|.|.+....+ ... . +++.+.. +.+|.|.++...|+|.|.|-..
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46899999998765 556688997643221 111 1 2333333 3689999999999999999877
Q ss_pred CCCCcccccceeeee
Q psy10163 415 NGIGDPIRKEFNVIV 429 (615)
Q Consensus 415 n~~G~p~~~~~~l~V 429 (615)
...|.....++.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 665665555555443
No 133
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=94.85 E-value=0.041 Score=47.56 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=48.3
Q ss_pred ccCCCeeeeeecc-c----CCCCCeeeccCCceeecCCCCceEEe-cCCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 352 AEEGNFVTLRCIA-I----GYPIPVYTWSKGEVSIDGSDGHYKLT-LDGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 352 ~~eg~~~tl~C~~-~----G~P~P~i~w~k~~~~l~~~~g~~~~~-~~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
..++....|.|+. . .++.|.|+|-|+...+.....++... ....|.|..+...|+|.|+|.+.+..|-
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 3456677888863 1 45778999999776665333333332 3357999999999999999999987543
No 134
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.70 E-value=0.036 Score=47.86 Aligned_cols=68 Identities=29% Similarity=0.446 Sum_probs=47.8
Q ss_pred cccCCCeeeeeecccCC-CCCeeeccCCc------eeec----------CCCCceEEecC-----CeEEEeeccccCCce
Q psy10163 351 EAEEGNFVTLRCIAIGY-PIPVYTWSKGE------VSID----------GSDGHYKLTLD-----GVLQIVGLVRQDAGI 408 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~-P~P~i~w~k~~------~~l~----------~~~g~~~~~~~-----gsl~I~~~~~~DsG~ 408 (615)
.+.+|+.++|.|.+... +...+.|.+.. .++. .-.+++.+..+ -+|+|.++...|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46689999999999887 77889996521 1111 11244444322 278999999999999
Q ss_pred eeecCCCCCC
Q psy10163 409 YVCVAANGIG 418 (615)
Q Consensus 409 Y~C~a~n~~G 418 (615)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999876543
No 135
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=94.64 E-value=0.046 Score=46.26 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=47.2
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCC
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAA 414 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~ 414 (615)
+.+.+|+.++|.|...+. ...+.|.++...+.. +.++.....| |.|..+...|+|.|.|.+.
T Consensus 6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~-~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 6 RTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA-QFSYRVGTDG-LLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEecCCCEEEECCCCCC-CccEEEEECCcccCC-CcceEEeCCC-CEEEECCHhhCEEEEEEEe
Confidence 456789999999998887 558999875544432 3555555555 6699999999999999866
No 136
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=94.45 E-value=0.054 Score=47.29 Aligned_cols=68 Identities=25% Similarity=0.422 Sum_probs=50.1
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCc------eeec-------CCCCceEEecC-----CeEEEeeccccCCceee
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGE------VSID-------GSDGHYKLTLD-----GVLQIVGLVRQDAGIYV 410 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~------~~l~-------~~~g~~~~~~~-----gsl~I~~~~~~DsG~Y~ 410 (615)
.+.+.+|+.++|.|.+.+.+.+.+.|.+.. .++. ...+++.+... -+|.|.++...|+|.|.
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence 456789999999999998888899996521 1111 12366655432 27999999999999999
Q ss_pred ecCCCC
Q psy10163 411 CVAANG 416 (615)
Q Consensus 411 C~a~n~ 416 (615)
|.+.+.
T Consensus 87 C~~~~~ 92 (109)
T cd04983 87 CALSES 92 (109)
T ss_pred EEEecC
Confidence 997754
No 137
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=94.16 E-value=0.11 Score=44.89 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=47.9
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCc-eee-c-----CCCCceEEec-CC---eEEEeeccccCCceeeecCCC
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGE-VSI-D-----GSDGHYKLTL-DG---VLQIVGLVRQDAGIYVCVAAN 415 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~-~~l-~-----~~~g~~~~~~-~g---sl~I~~~~~~DsG~Y~C~a~n 415 (615)
.+.+.+|+.++|.|.+.+.....+.|-+.. .++ . ..+.++.... .+ +|+|..+...|+|.|.|.+-.
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 467889999999999998866667775422 111 0 1345665444 23 589999999999999998653
No 138
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=94.13 E-value=0.11 Score=45.47 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=57.8
Q ss_pred CcccccCCCeeeeeecccCCCCCe-eeccCCceeecCCCCceEEe-c------CCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDGHYKLT-L------DGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~-i~w~k~~~~l~~~~g~~~~~-~------~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
..+.+++|+.+.|++.+...|.|. +.|.+.+..+.......... . ...|.+..+...|.|.|++.+.|+...
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 446788999999999999999998 99998665553222222211 1 136889999999999999999998776
Q ss_pred ccccceeee
Q psy10163 420 PIRKEFNVI 428 (615)
Q Consensus 420 p~~~~~~l~ 428 (615)
....+.|.
T Consensus 91 -~s~tF~l~ 98 (101)
T cd05860 91 -ASVTFNVY 98 (101)
T ss_pred -EEEEEEEE
Confidence 33334433
No 139
>KOG4221|consensus
Probab=93.84 E-value=0.1 Score=62.25 Aligned_cols=76 Identities=25% Similarity=0.446 Sum_probs=60.3
Q ss_pred ccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccccccee
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
..+..|+.+-+.|.+-+.|.|.|.|.|.+.-+- .+++++...+|.|+|..+.+.|.|.|-|++.++.-.-...+..
T Consensus 150 ~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~-~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ 225 (1381)
T KOG4221|consen 150 TTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP-LDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAE 225 (1381)
T ss_pred eeEecCCcEEEEEEEcCccCceeEEeccccccc-CCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeE
Confidence 456688999999999999999999998665332 2348888899999999999999999999988764443344433
No 140
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=93.84 E-value=0.084 Score=44.90 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=43.7
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCC
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
+...+.+|+.++|+|... .+...+.|.|+...+.... .......+.+.|..+...|+|.|.|...+.
T Consensus 9 p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 9 PSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 344567899999999875 5666666655322211100 001122346888999999999999998765
No 141
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=93.77 E-value=0.032 Score=44.29 Aligned_cols=57 Identities=33% Similarity=0.556 Sum_probs=40.7
Q ss_pred eeeeecccCCC-CCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCC
Q psy10163 358 VTLRCIAIGYP-IPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415 (615)
Q Consensus 358 ~tl~C~~~G~P-~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n 415 (615)
++|.|.+.+.| .+.+.|.. ..................|.|..+...|.|.|.|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYD-SNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEET-EEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEe-cCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999999998 88999992 11111111223334456788889999999999999864
No 142
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=93.56 E-value=0.16 Score=44.63 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=47.5
Q ss_pred cccccCCCeeeeeecccCCCCCeeeccCCc------eee-----------cCCCCceEEecC----CeEEEeeccccCCc
Q psy10163 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGE------VSI-----------DGSDGHYKLTLD----GVLQIVGLVRQDAG 407 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~------~~l-----------~~~~g~~~~~~~----gsl~I~~~~~~DsG 407 (615)
.+.+.+|+.++|.|.+.+ +.+.|.|-|.. .++ ....+++..... -+|.|.++...|+|
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 356789999999999888 78899995421 121 111245544322 36899999999999
Q ss_pred eeeecCCCC
Q psy10163 408 IYVCVAANG 416 (615)
Q Consensus 408 ~Y~C~a~n~ 416 (615)
.|.|.+...
T Consensus 86 ~Y~Ca~~~~ 94 (110)
T cd05899 86 VYLCASSLG 94 (110)
T ss_pred EEEEEeeCC
Confidence 999997654
No 143
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=93.15 E-value=0.14 Score=45.37 Aligned_cols=76 Identities=29% Similarity=0.460 Sum_probs=49.0
Q ss_pred CCeeeeeecccCCC----------CCeeeccCC-----ceee--cCC--------CCceEEe------cCCeEEEeeccc
Q psy10163 355 GNFVTLRCIAIGYP----------IPVYTWSKG-----EVSI--DGS--------DGHYKLT------LDGVLQIVGLVR 403 (615)
Q Consensus 355 g~~~tl~C~~~G~P----------~P~i~w~k~-----~~~l--~~~--------~g~~~~~------~~gsl~I~~~~~ 403 (615)
|+.++|.|.....+ ...|.|.|. ..++ ... .+|+.+. .+.+|+|.++..
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 67889999876554 256889652 1111 100 1454442 234799999999
Q ss_pred cCCceeeecCCCCCCcccccceeeeecc
Q psy10163 404 QDAGIYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 404 ~DsG~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
.|+|.|.|....+... -+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 9999999987665443 45566666654
No 144
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=92.95 E-value=0.2 Score=43.74 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=46.2
Q ss_pred cccccCCCeeeeeecccCCC-CCeeeccC------CceeecC-------CCCceEEecC---CeEEEeeccccCCceeee
Q psy10163 349 TVEAEEGNFVTLRCIAIGYP-IPVYTWSK------GEVSIDG-------SDGHYKLTLD---GVLQIVGLVRQDAGIYVC 411 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~P-~P~i~w~k------~~~~l~~-------~~g~~~~~~~---gsl~I~~~~~~DsG~Y~C 411 (615)
.+.+.+|+.++|.|.+.+.. ...|.|-+ ...++.. ..+++..... .+|.|.++...|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 35678999999999987766 67899943 1222211 1234544322 258999999999999999
Q ss_pred cCCC
Q psy10163 412 VAAN 415 (615)
Q Consensus 412 ~a~n 415 (615)
.+.+
T Consensus 89 a~~~ 92 (106)
T cd04980 89 QQYG 92 (106)
T ss_pred EEeC
Confidence 8754
No 145
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=92.30 E-value=0.25 Score=42.08 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=40.4
Q ss_pred eeeeeecccCCC---CCeeeccCCce-------eecCC---------CCceEEe----cCCeEEEeeccccCCceeeecC
Q psy10163 357 FVTLRCIAIGYP---IPVYTWSKGEV-------SIDGS---------DGHYKLT----LDGVLQIVGLVRQDAGIYVCVA 413 (615)
Q Consensus 357 ~~tl~C~~~G~P---~P~i~w~k~~~-------~l~~~---------~g~~~~~----~~gsl~I~~~~~~DsG~Y~C~a 413 (615)
.++|.|.....+ ...|.|.|... ++... .++..+. .+.+|+|.++...|+|.|.|..
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v 81 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF 81 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence 578889877654 44799977331 11111 2333333 3468999999999999999985
Q ss_pred C-CCCCc
Q psy10163 414 A-NGIGD 419 (615)
Q Consensus 414 ~-n~~G~ 419 (615)
. ...|.
T Consensus 82 ~~~~~g~ 88 (98)
T cd05718 82 ATFPQGN 88 (98)
T ss_pred EeCCCCc
Confidence 4 34444
No 146
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=92.28 E-value=0.28 Score=43.43 Aligned_cols=67 Identities=24% Similarity=0.508 Sum_probs=47.5
Q ss_pred cccccCCCeeeeeecccC--CCCCeeeccCC------ceee--c----------CCCCceEEecC-----CeEEEeeccc
Q psy10163 349 TVEAEEGNFVTLRCIAIG--YPIPVYTWSKG------EVSI--D----------GSDGHYKLTLD-----GVLQIVGLVR 403 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G--~P~P~i~w~k~------~~~l--~----------~~~g~~~~~~~-----gsl~I~~~~~ 403 (615)
.+.+.+|+.++|.|.+.+ .+.+.+.|-+. ..++ . ...+++.+..+ ..|.|.++..
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 456788999999999877 68889999551 1111 1 01355554432 2689999999
Q ss_pred cCCceeeecCCC
Q psy10163 404 QDAGIYVCVAAN 415 (615)
Q Consensus 404 ~DsG~Y~C~a~n 415 (615)
.|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999998653
No 147
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=91.70 E-value=0.2 Score=44.54 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCeeeeeecccCCC-------CCeeeccCCc--------eeec----------CCCCceEEec------CCeEEEeeccc
Q psy10163 355 GNFVTLRCIAIGYP-------IPVYTWSKGE--------VSID----------GSDGHYKLTL------DGVLQIVGLVR 403 (615)
Q Consensus 355 g~~~tl~C~~~G~P-------~P~i~w~k~~--------~~l~----------~~~g~~~~~~------~gsl~I~~~~~ 403 (615)
|+.++|.|...-.| .+.|.|.+.. .++. .=.||..+.. +.+|.|.++..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 56788889754333 3688896531 1111 1125555543 34899999999
Q ss_pred cCCceeeecCCCCCCcccccceeeeecc
Q psy10163 404 QDAGIYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 404 ~DsG~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
.|+|.|.|....+... -+..+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~-~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGIND-EQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcc-cEEEEEEEEEE
Confidence 9999999986665433 44556666654
No 148
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=91.31 E-value=0.41 Score=41.05 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=26.1
Q ss_pred CeEEEeeccccCCceeeecCCCCCCcccccceeeee
Q psy10163 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429 (615)
Q Consensus 394 gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V 429 (615)
.+|.|.++...|+|.|.|...+..+. ....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 47999999999999999998876554 344444443
No 149
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=91.08 E-value=0.38 Score=41.15 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=45.7
Q ss_pred ccccCCCeeeeeecccC-CCCCeeeccCCc------eee------cCCCCceEEecC-----CeEEEeeccccCCceeee
Q psy10163 350 VEAEEGNFVTLRCIAIG-YPIPVYTWSKGE------VSI------DGSDGHYKLTLD-----GVLQIVGLVRQDAGIYVC 411 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G-~P~P~i~w~k~~------~~l------~~~~g~~~~~~~-----gsl~I~~~~~~DsG~Y~C 411 (615)
+.+.+|+.++|.|.... .....+.|.+.. .++ ..-.+++.+..+ -+|+|.++...|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35678999999998765 456778996532 111 011255655422 268999999999999999
Q ss_pred cCCCC
Q psy10163 412 VAANG 416 (615)
Q Consensus 412 ~a~n~ 416 (615)
.....
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 86654
No 150
>KOG4194|consensus
Probab=91.00 E-value=0.21 Score=55.84 Aligned_cols=69 Identities=29% Similarity=0.491 Sum_probs=50.9
Q ss_pred ccccCCCeeeeeecccCCCC-CeeeccCCceeecCCCCceEEec-CCeEEEeeccccCCceeeecCCCCCCc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPI-PVYTWSKGEVSIDGSDGHYKLTL-DGVLQIVGLVRQDAGIYVCVAANGIGD 419 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~-P~i~w~k~~~~l~~~~g~~~~~~-~gsl~I~~~~~~DsG~Y~C~a~n~~G~ 419 (615)
..+..|+++.+.|.+.|.|. |.+.|.|++..+-..+ +..+.. +..|++......|+|.|+|...+..|.
T Consensus 716 ~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~-rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 716 QLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITE-RHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred eEEEecceEEEEEecCCCCCCccccccCCCCceEEee-cccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence 34567899999999999998 9999998544432222 222222 334667777889999999999999887
No 151
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=90.84 E-value=0.93 Score=38.79 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=44.0
Q ss_pred cccCCCeeeeeecccCC--CCCeeeccC------CceeecC-------CCCceEEecCC---eEEEeeccccCCceeeec
Q psy10163 351 EAEEGNFVTLRCIAIGY--PIPVYTWSK------GEVSIDG-------SDGHYKLTLDG---VLQIVGLVRQDAGIYVCV 412 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~--P~P~i~w~k------~~~~l~~-------~~g~~~~~~~g---sl~I~~~~~~DsG~Y~C~ 412 (615)
.+.+|+.++|.|...+. ....|.|-+ ...++-. ..+++....++ +|+|.++...|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 35689999999988765 566799943 1222210 12355443332 589999999999999998
Q ss_pred CCC
Q psy10163 413 AAN 415 (615)
Q Consensus 413 a~n 415 (615)
..+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 654
No 152
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=90.69 E-value=0.61 Score=41.55 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=45.9
Q ss_pred CcccccCCCeeeeeecccCCC----CCeeeccC-----Cc--eee-cC------CC----CceEEe-----cCCeEEEee
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYP----IPVYTWSK-----GE--VSI-DG------SD----GHYKLT-----LDGVLQIVG 400 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P----~P~i~w~k-----~~--~~l-~~------~~----g~~~~~-----~~gsl~I~~ 400 (615)
..+.+.+|+.++|.|.....+ ...|.|.+ .. .++ .. .. ++..+. .+.+|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 456788999999999765432 23699942 11 122 11 11 233222 244799999
Q ss_pred ccccCCceeeecCCCCCC
Q psy10163 401 LVRQDAGIYVCVAANGIG 418 (615)
Q Consensus 401 ~~~~DsG~Y~C~a~n~~G 418 (615)
+...|+|.|.|...+...
T Consensus 86 v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CChhhCEEEEEEEEeCCC
Confidence 999999999998775433
No 153
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=89.73 E-value=0.56 Score=42.15 Aligned_cols=38 Identities=39% Similarity=0.645 Sum_probs=29.5
Q ss_pred CCeEEEeeccccCCceeeecCCCCCCcccccceeeeecc
Q psy10163 393 DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 393 ~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
+.+|.|.++...|+|.|.|.-..+... .+..+.|.|.+
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEEE
Confidence 458999999999999999987766555 45566666654
No 154
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=88.90 E-value=0.91 Score=40.31 Aligned_cols=69 Identities=30% Similarity=0.371 Sum_probs=44.1
Q ss_pred CcccccCCCeeeeeecccCCC----CCeeeccCC-------ceee--c-C-----CCCc----eEEec-----CCeEEEe
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYP----IPVYTWSKG-------EVSI--D-G-----SDGH----YKLTL-----DGVLQIV 399 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P----~P~i~w~k~-------~~~l--~-~-----~~g~----~~~~~-----~gsl~I~ 399 (615)
..+.+.+|+.++|.|...... ...|.|.+. ..++ . . ..++ ..+.. +.+|+|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 346677999999999765432 256999431 1111 0 0 1222 22222 2479999
Q ss_pred eccccCCceeeecCCCC
Q psy10163 400 GLVRQDAGIYVCVAANG 416 (615)
Q Consensus 400 ~~~~~DsG~Y~C~a~n~ 416 (615)
++...|+|.|.|...+.
T Consensus 86 ~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 86 NLQFTDNGTYTCDVKNP 102 (116)
T ss_pred eCCcccCEEEEEEEEeC
Confidence 99999999999987654
No 155
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=88.60 E-value=1.2 Score=39.92 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=46.7
Q ss_pred CCcccccCCCeeeeeecccCC----CCCeeeccCC----c---eeecC--------CC----CceEEe-----cCCeEEE
Q psy10163 347 EPTVEAEEGNFVTLRCIAIGY----PIPVYTWSKG----E---VSIDG--------SD----GHYKLT-----LDGVLQI 398 (615)
Q Consensus 347 e~~v~~~eg~~~tl~C~~~G~----P~P~i~w~k~----~---~~l~~--------~~----g~~~~~-----~~gsl~I 398 (615)
...+.+..|+.++|.|..... +...|+|... . .++.- .. +|..+. .+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 345677789999999987653 3458999320 0 11110 11 244332 3458999
Q ss_pred eeccccCCceeeecCCCCC
Q psy10163 399 VGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 399 ~~~~~~DsG~Y~C~a~n~~ 417 (615)
.++...|.|.|+|...|..
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred ccCCcccCEEEEEEEEcCC
Confidence 9999999999999877653
No 156
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=88.06 E-value=0.52 Score=40.60 Aligned_cols=68 Identities=26% Similarity=0.456 Sum_probs=47.3
Q ss_pred cccccCCCeeeeeeccc-CCCCCeeeccCCc------eee--cC----------CCCceEEecCC-----eEEEeecccc
Q psy10163 349 TVEAEEGNFVTLRCIAI-GYPIPVYTWSKGE------VSI--DG----------SDGHYKLTLDG-----VLQIVGLVRQ 404 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~-G~P~P~i~w~k~~------~~l--~~----------~~g~~~~~~~g-----sl~I~~~~~~ 404 (615)
.+.+.+|+.++|.|... ......|.|.+.. .++ .. -.++..+.... +|.|.++...
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 46778999999999988 5667789996521 122 00 11344444433 5999999999
Q ss_pred CCceeeecCCCC
Q psy10163 405 DAGIYVCVAANG 416 (615)
Q Consensus 405 DsG~Y~C~a~n~ 416 (615)
|+|.|.|.....
T Consensus 90 DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 90 DSGTYFCQVSTS 101 (114)
T ss_dssp GEEEEEEEEEES
T ss_pred cCEEEEEEEEEC
Confidence 999999986543
No 157
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=87.18 E-value=1.6 Score=42.31 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=55.6
Q ss_pred CcccccCCCeeeeeeccc-CCCCCeeeccCC--cee-ecCC--------CCceEEe----cCCeEEEeeccccCCceeee
Q psy10163 348 PTVEAEEGNFVTLRCIAI-GYPIPVYTWSKG--EVS-IDGS--------DGHYKLT----LDGVLQIVGLVRQDAGIYVC 411 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~-G~P~P~i~w~k~--~~~-l~~~--------~g~~~~~----~~gsl~I~~~~~~DsG~Y~C 411 (615)
..+.+.+|+.++|.|... +...+.|+|.|. ... +... .+|..+. .+..|.|.++...|+|.|.|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 346788999999999974 777889999773 111 1110 1233321 33478999999999999999
Q ss_pred c-CCCCCCcccccceeeeecc
Q psy10163 412 V-AANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 412 ~-a~n~~G~p~~~~~~l~V~~ 431 (615)
- ..-+.|...+....|.|.+
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 6 4455553345556666655
No 158
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=87.12 E-value=1.2 Score=38.49 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=26.1
Q ss_pred CCeEEEeeccccCCceeeecCCC-CCCcccccceeeee
Q psy10163 393 DGVLQIVGLVRQDAGIYVCVAAN-GIGDPIRKEFNVIV 429 (615)
Q Consensus 393 ~gsl~I~~~~~~DsG~Y~C~a~n-~~G~p~~~~~~l~V 429 (615)
+.+|.|.++...|+|.|.|...+ +.|. .+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 55899999999999999998554 4454 344444444
No 159
>KOG3540|consensus
Probab=86.28 E-value=0.31 Score=52.75 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=52.0
Q ss_pred CCcccCCCccCCCCCCeeeeEeeCCCCceeeeeeCCCCCCCCCCCCHHHHHHhCCCC
Q psy10163 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101 (615)
Q Consensus 45 ~~~C~~~~~~G~C~~~~~rw~yd~~~~~C~~F~y~GC~Gn~N~F~t~~~C~~~C~~~ 101 (615)
-..|..+..++.|.....+|-|+..-.+|+-|-.+||.++.|+|...++|+.+|...
T Consensus 107 ck~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~etC~tk 163 (615)
T KOG3540|consen 107 CKFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAMETCSTK 163 (615)
T ss_pred ccccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHHHHhccC
Confidence 445566788899999999999999999999999999999999999999999999865
No 160
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=86.18 E-value=0.94 Score=33.88 Aligned_cols=60 Identities=35% Similarity=0.562 Sum_probs=40.1
Q ss_pred eeeeecccCCCCCeeeccCCceeecCCC------CceEEecCCeEEEeeccccCCceeeecCCCCC
Q psy10163 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSD------GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 358 ~tl~C~~~G~P~P~i~w~k~~~~l~~~~------g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~ 417 (615)
++|.|.+.+.+.+.+.|.+......... ..........|.|..+...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 3578988888888999976443332111 11122334468888888899999999877654
No 161
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=86.17 E-value=0.83 Score=39.13 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=39.4
Q ss_pred CcccccCCCeeeeeecccCCCCCeeeccCCceeecC--CCCceEEecCCeEEEeeccccCCceeeecC
Q psy10163 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDG--SDGHYKLTLDGVLQIVGLVRQDAGIYVCVA 413 (615)
Q Consensus 348 ~~v~~~eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~--~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a 413 (615)
+...+.+|+++||+|.... +.-.+.|.|+...... ..+.........+.|..+...|+|.|.|..
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 3445678999999997665 4456677553211000 000000001226789999999999999984
No 162
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=86.11 E-value=0.79 Score=38.66 Aligned_cols=65 Identities=26% Similarity=0.382 Sum_probs=40.2
Q ss_pred cCCCeeeeeecccCC-C-CCeeeccCCceeecCCC--CceEEecCCe------EEEeeccccCCceeeecCCCCC
Q psy10163 353 EEGNFVTLRCIAIGY-P-IPVYTWSKGEVSIDGSD--GHYKLTLDGV------LQIVGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 353 ~eg~~~tl~C~~~G~-P-~P~i~w~k~~~~l~~~~--g~~~~~~~gs------l~I~~~~~~DsG~Y~C~a~n~~ 417 (615)
..|+.++|.|.+.|. | ...|+|.++...+.... .......++. |.+......+.+.|.|.+.+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 357789999999998 6 46899987554443221 1222333343 2233333348899999987653
No 163
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=84.46 E-value=1.8 Score=37.88 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=41.5
Q ss_pred cccCCCeeeeeecccCCC-CCeeeccCCce---------e-ecC-----------CCCceEEe--cCC---eEEEeeccc
Q psy10163 351 EAEEGNFVTLRCIAIGYP-IPVYTWSKGEV---------S-IDG-----------SDGHYKLT--LDG---VLQIVGLVR 403 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P-~P~i~w~k~~~---------~-l~~-----------~~g~~~~~--~~g---sl~I~~~~~ 403 (615)
.+.+|+.++|.|.+.+.. ...+.|-+... + +.. ..+++... ... .|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 356899999999886643 45789954111 1 110 02345332 122 589999999
Q ss_pred cCCceeeecCC
Q psy10163 404 QDAGIYVCVAA 414 (615)
Q Consensus 404 ~DsG~Y~C~a~ 414 (615)
.|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999864
No 164
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=83.79 E-value=2.3 Score=36.42 Aligned_cols=65 Identities=23% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCeeeeeecccCCCCC-eeeccCCc-----eee--cCC---------CCceEEe----cCCeEEEeeccccCCceeeecC
Q psy10163 355 GNFVTLRCIAIGYPIP-VYTWSKGE-----VSI--DGS---------DGHYKLT----LDGVLQIVGLVRQDAGIYVCVA 413 (615)
Q Consensus 355 g~~~tl~C~~~G~P~P-~i~w~k~~-----~~l--~~~---------~g~~~~~----~~gsl~I~~~~~~DsG~Y~C~a 413 (615)
|+.++|.|........ .|.|.|.. .++ ... .++..+. .+.+|.|.++...|+|.|.|.-
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 5678999975544322 58997621 111 110 1222221 2447999999999999999973
Q ss_pred -CCCCCc
Q psy10163 414 -ANGIGD 419 (615)
Q Consensus 414 -~n~~G~ 419 (615)
..+.|.
T Consensus 81 ~~~p~g~ 87 (97)
T cd05846 81 NTFPDGS 87 (97)
T ss_pred EeCCCCC
Confidence 344443
No 165
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=82.36 E-value=2 Score=37.97 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=45.2
Q ss_pred cccccCCCeeeeeecccCC-CCCeeeccCC------ceeec-------CCCCceEEec-----CCeEEEeeccccCCcee
Q psy10163 349 TVEAEEGNFVTLRCIAIGY-PIPVYTWSKG------EVSID-------GSDGHYKLTL-----DGVLQIVGLVRQDAGIY 409 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~-P~P~i~w~k~------~~~l~-------~~~g~~~~~~-----~gsl~I~~~~~~DsG~Y 409 (615)
.+.+.+|+.++|.|..... ....|.|.+. ..++. ...+++.+.. .-+|.|..+...|+|.|
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 4567899999999987653 4567889541 11111 1125665542 22689999999999999
Q ss_pred eecCC
Q psy10163 410 VCVAA 414 (615)
Q Consensus 410 ~C~a~ 414 (615)
.|...
T Consensus 88 ~C~~~ 92 (116)
T cd07706 88 FCALS 92 (116)
T ss_pred EEEEE
Confidence 99865
No 166
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=81.80 E-value=4.2 Score=33.88 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=34.7
Q ss_pred eeeeecccCC-CCCeeeccCCceeecCCCCceEEecC-Ce------EEEeeccccCCceeeecCCCCC
Q psy10163 358 VTLRCIAIGY-PIPVYTWSKGEVSIDGSDGHYKLTLD-GV------LQIVGLVRQDAGIYVCVAANGI 417 (615)
Q Consensus 358 ~tl~C~~~G~-P~P~i~w~k~~~~l~~~~g~~~~~~~-gs------l~I~~~~~~DsG~Y~C~a~n~~ 417 (615)
++|.|.+.|. |.+.|+|.++...+....-......+ +. |.+......+...|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 5789999975 99999998865544321111111111 22 3333333445577999988764
No 167
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=81.51 E-value=2.6 Score=33.71 Aligned_cols=51 Identities=31% Similarity=0.574 Sum_probs=33.0
Q ss_pred CCCeeeeeecccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCC
Q psy10163 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
.|.+++|.|+..... |.|.++...+...+... ...+.. .++|-|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~~---i~W~~n~~~~~g~~~~~--------~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGDD---IKWKKNDQVSQGSDEKY--------LSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCCC---ceEEeCCccCCCCCceE--------EeeccC-CCCceEEEEeCCC
Confidence 477899999876443 89998765444322222 122233 7899999998754
No 168
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=81.16 E-value=3.9 Score=33.85 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=33.3
Q ss_pred eeeeecccCC-CCCeeeccCCceeecCCCCceEEe-cCCeEEEe-----eccc-cCCceeeecCCCCCC
Q psy10163 358 VTLRCIAIGY-PIPVYTWSKGEVSIDGSDGHYKLT-LDGVLQIV-----GLVR-QDAGIYVCVAANGIG 418 (615)
Q Consensus 358 ~tl~C~~~G~-P~P~i~w~k~~~~l~~~~g~~~~~-~~gsl~I~-----~~~~-~DsG~Y~C~a~n~~G 418 (615)
++|.|.+.+. |.+.|+|.++...+.... ..... .++.+.+. .... .+...|.|.+.+..-
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 5788998765 999999987554443221 11111 22222222 2223 334579999887644
No 169
>KOG3540|consensus
Probab=78.64 E-value=0.86 Score=49.48 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred CCccccCcCCCCCCCCceEEEeCCCCceEEEEeccccCCCCCCCChHHHHHhccCC
Q psy10163 497 DLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGEF 552 (615)
Q Consensus 497 ~~C~~~~~~g~C~~~~~rwyyd~~~~~C~~F~y~GC~Gn~N~F~s~~~C~~~C~~~ 552 (615)
..|+.+...+.|.....+|-|+..-..|+-|..+||.++.|+|....+|+.+|...
T Consensus 108 k~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~etC~tk 163 (615)
T KOG3540|consen 108 KFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAMETCSTK 163 (615)
T ss_pred cccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHHHHhccC
Confidence 56777788899999999999999999999999999999999999999999999864
No 170
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=78.45 E-value=4 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=26.7
Q ss_pred CCeEEEeeccccCCceeeec-CCCCCCcccccceeee
Q psy10163 393 DGVLQIVGLVRQDAGIYVCV-AANGIGDPIRKEFNVI 428 (615)
Q Consensus 393 ~gsl~I~~~~~~DsG~Y~C~-a~n~~G~p~~~~~~l~ 428 (615)
+++|.|.++...|.|.|.|. ...+.|. .++...|.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~-~~~~~~l~ 94 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGN-TQSSTTVT 94 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCC-eeEEEEEE
Confidence 66899999999999999997 5666675 44444443
No 171
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=77.96 E-value=3.7 Score=35.73 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=40.5
Q ss_pred ccCCCeeeeeecccCCCCCeeeccCCc--------eee--cCC-----------CCceEEec---CCeEEEeeccccCCc
Q psy10163 352 AEEGNFVTLRCIAIGYPIPVYTWSKGE--------VSI--DGS-----------DGHYKLTL---DGVLQIVGLVRQDAG 407 (615)
Q Consensus 352 ~~eg~~~tl~C~~~G~P~P~i~w~k~~--------~~l--~~~-----------~g~~~~~~---~gsl~I~~~~~~DsG 407 (615)
+.+|+.++|.|.+...-...+.|-+.. .++ ... .+++.... .-+|+|..+...|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 557999999998765545668894311 111 110 12333222 226999999999999
Q ss_pred eeeecCC
Q psy10163 408 IYVCVAA 414 (615)
Q Consensus 408 ~Y~C~a~ 414 (615)
+|.|...
T Consensus 83 tY~Ca~~ 89 (104)
T cd05720 83 YYFCSVA 89 (104)
T ss_pred EEEEEEc
Confidence 9999754
No 172
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=77.02 E-value=5.4 Score=33.48 Aligned_cols=59 Identities=22% Similarity=0.521 Sum_probs=34.0
Q ss_pred eeeeeccc-CCCCCeeeccCCceeecCCCCceE-----EecCCeEEEeeccccCCc-eeeecCCCCC
Q psy10163 358 VTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYK-----LTLDGVLQIVGLVRQDAG-IYVCVAANGI 417 (615)
Q Consensus 358 ~tl~C~~~-G~P~P~i~w~k~~~~l~~~~g~~~-----~~~~gsl~I~~~~~~DsG-~Y~C~a~n~~ 417 (615)
+.|.|.+. +.|.+.|+|.++...+....-.-. .....+|.+ .....|.| .|.|.|.+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcc
Confidence 46788876 569999999886665543211000 111113333 33445555 5899998864
No 173
>smart00406 IGv Immunoglobulin V-Type.
Probab=76.66 E-value=3.2 Score=33.23 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=16.4
Q ss_pred eEEEeeccccCCceeeec
Q psy10163 395 VLQIVGLVRQDAGIYVCV 412 (615)
Q Consensus 395 sl~I~~~~~~DsG~Y~C~ 412 (615)
+|.|.++...|+|.|.|.
T Consensus 63 ~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 63 SLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEcCCCHHHCEEEEEc
Confidence 689999999999999994
No 174
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=76.49 E-value=3.6 Score=36.68 Aligned_cols=66 Identities=24% Similarity=0.399 Sum_probs=43.3
Q ss_pred ccccCCCeeeeeecccCCC--CCeeeccC------Cceee--cC----------CCCceEEecCC-----eEEEeecccc
Q psy10163 350 VEAEEGNFVTLRCIAIGYP--IPVYTWSK------GEVSI--DG----------SDGHYKLTLDG-----VLQIVGLVRQ 404 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P--~P~i~w~k------~~~~l--~~----------~~g~~~~~~~g-----sl~I~~~~~~ 404 (615)
+.+.+|+.++|.|...+.- ...+.|-+ ...++ .. ..+++....+. .|+|.++...
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 5677899999999765433 45688943 11121 10 12455544222 5899999999
Q ss_pred CCceeeecCCC
Q psy10163 405 DAGIYVCVAAN 415 (615)
Q Consensus 405 DsG~Y~C~a~n 415 (615)
|+|.|.|....
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999997653
No 175
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=76.18 E-value=6.9 Score=33.26 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=40.0
Q ss_pred ccCCCeeeeeecccC--CCCCeeeccCCceeecCCCCceE-EecCCeEEEeeccccCCceeeecCCC
Q psy10163 352 AEEGNFVTLRCIAIG--YPIPVYTWSKGEVSIDGSDGHYK-LTLDGVLQIVGLVRQDAGIYVCVAAN 415 (615)
Q Consensus 352 ~~eg~~~tl~C~~~G--~P~P~i~w~k~~~~l~~~~g~~~-~~~~gsl~I~~~~~~DsG~Y~C~a~n 415 (615)
...|+.++|.|.... .|.+.|.|...+. ..... .....+|.+..+..+|+|..+|...-
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n-----~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGN-----KSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred eecCCcEEEEEecCCCCCCCccEEEeCCCC-----ccceeccCCccEEEeceeCcccCCEEEEEEEE
Confidence 446889999998865 4455999975221 11111 12334788899999999999998653
No 176
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=75.29 E-value=4.8 Score=35.83 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=42.7
Q ss_pred cccccCCCeeeeeecccCC-----C-CCeeeccCC-------ceee-cC--------CCCceEEec-----CCeEEEeec
Q psy10163 349 TVEAEEGNFVTLRCIAIGY-----P-IPVYTWSKG-------EVSI-DG--------SDGHYKLTL-----DGVLQIVGL 401 (615)
Q Consensus 349 ~v~~~eg~~~tl~C~~~G~-----P-~P~i~w~k~-------~~~l-~~--------~~g~~~~~~-----~gsl~I~~~ 401 (615)
.+.+.+|+.++|.|..... + ...+.|.+. .+++ .. -.|++.+.. +.+|+|.++
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l 87 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA 87 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence 4678899999999964321 1 245889652 2121 11 115555532 137999999
Q ss_pred cccCCceeeecCC
Q psy10163 402 VRQDAGIYVCVAA 414 (615)
Q Consensus 402 ~~~DsG~Y~C~a~ 414 (615)
...|+|.|.|...
T Consensus 88 ~~~Dsg~Y~C~~~ 100 (119)
T cd05712 88 QPEDSGKYFFRVE 100 (119)
T ss_pred ChhhCeEEEEEEE
Confidence 9999999999753
No 177
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=74.06 E-value=5.1 Score=34.96 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=42.9
Q ss_pred ccCCCeeeeeecccC-CCCCe--eeccCCceeecCCC-Cce---EEecCCeEEEeeccccCCc-eeeecCCCCCCc
Q psy10163 352 AEEGNFVTLRCIAIG-YPIPV--YTWSKGEVSIDGSD-GHY---KLTLDGVLQIVGLVRQDAG-IYVCVAANGIGD 419 (615)
Q Consensus 352 ~~eg~~~tl~C~~~G-~P~P~--i~w~k~~~~l~~~~-g~~---~~~~~gsl~I~~~~~~DsG-~Y~C~a~n~~G~ 419 (615)
+.+|+..+|.|.+.| .|.+. |+|-++...+.... ... ......++.+ .....|.| .|.|.|.++.+.
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCcEEEEEEEeccCc
Confidence 458999999999885 78887 79988776664321 000 0111112332 34567777 699999988665
No 178
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=73.02 E-value=9.3 Score=31.88 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=31.8
Q ss_pred eeeeecccC-CCCCeeeccCCceeecCCC-CceEEecCC------eEEEeeccccCCceeeecCCCC
Q psy10163 358 VTLRCIAIG-YPIPVYTWSKGEVSIDGSD-GHYKLTLDG------VLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 358 ~tl~C~~~G-~P~P~i~w~k~~~~l~~~~-g~~~~~~~g------sl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
++|.|.+.| .|...|+|.++...+.... .......++ .|.+..-...+...|.|.+.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence 578899987 6788999987544432111 001111122 2333222233445699988765
No 179
>PHA03376 BARF1; Provisional
Probab=69.24 E-value=12 Score=36.54 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=55.6
Q ss_pred ccccCCCeeeeeecccC---CCCCeeeccCC-----ceeecC-----------CCCceEEec-CC--eEEEeeccccCCc
Q psy10163 350 VEAEEGNFVTLRCIAIG---YPIPVYTWSKG-----EVSIDG-----------SDGHYKLTL-DG--VLQIVGLVRQDAG 407 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G---~P~P~i~w~k~-----~~~l~~-----------~~g~~~~~~-~g--sl~I~~~~~~DsG 407 (615)
+....|+.++|.|.... .+.=.|.|.|. .+++.. ..|++-+.. .+ +|.|.++...|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 44567889999997552 24447889873 223311 224443322 22 6899999999999
Q ss_pred eeeecCCCCCCcccccc-------eeeeecccceee-eeeCCCCcee
Q psy10163 408 IYVCVAANGIGDPIRKE-------FNVIVRGNYEQW-YYDRDTDSCQ 446 (615)
Q Consensus 408 ~Y~C~a~n~~G~p~~~~-------~~l~V~~~~~~w-yyd~~~~~C~ 446 (615)
+|.|.-..+.....+.+ +.|.|++....| -+|..+-+|.
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~ 147 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCT 147 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEe
Confidence 99998554433223333 225555522111 1566666664
No 180
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=67.55 E-value=3.8 Score=34.36 Aligned_cols=29 Identities=45% Similarity=0.761 Sum_probs=24.9
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|.+.+.|.|.+.|.+..
T Consensus 11 ~~~~~G~~v~l~C~~~G~P~P~v~W~k~~ 39 (88)
T cd05851 11 TYALKGQNVTLECFALGNPVPVIRWRKIL 39 (88)
T ss_pred EEEeCCCcEEEEEEecccCCCEEEEEECC
Confidence 44678999999999999999999997654
No 181
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=65.48 E-value=11 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCeEEEeeccccCCceeeec-CCCCCCc
Q psy10163 393 DGVLQIVGLVRQDAGIYVCV-AANGIGD 419 (615)
Q Consensus 393 ~gsl~I~~~~~~DsG~Y~C~-a~n~~G~ 419 (615)
+.+|.|.++...|+|.|.|. ..-+.|.
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~ 86 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGS 86 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCC
Confidence 57899999999999999996 4555554
No 182
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=61.55 E-value=6.7 Score=34.02 Aligned_cols=37 Identities=30% Similarity=0.597 Sum_probs=27.3
Q ss_pred cCCeEEEeeccccCCceeeecCCC-CCCcccccceeeee
Q psy10163 392 LDGVLQIVGLVRQDAGIYVCVAAN-GIGDPIRKEFNVIV 429 (615)
Q Consensus 392 ~~gsl~I~~~~~~DsG~Y~C~a~n-~~G~p~~~~~~l~V 429 (615)
.+++|+|.++...|.|.|.|-..+ +.|. .+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 457999999999999999998665 4553 444454443
No 183
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=61.26 E-value=5.2 Score=32.12 Aligned_cols=26 Identities=50% Similarity=0.972 Sum_probs=22.0
Q ss_pred cCceeeeeeccCCCCCCceeccCCCc
Q psy10163 137 EGNFVTLRCIAIGYPIPVYTWSKGEV 162 (615)
Q Consensus 137 ~g~~v~l~C~~~~~p~p~~~~~~~~~ 162 (615)
+|+.|.|.|.+.+.|.|.+.|.+++.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~ 26 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGS 26 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCE
Confidence 46778999999999999999976543
No 184
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=61.15 E-value=5.2 Score=31.95 Aligned_cols=24 Identities=46% Similarity=1.024 Sum_probs=20.4
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.|.|.|.+.+.|.|.+.|.+++
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g 24 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGG 24 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECC
Confidence 346899999999999999997664
No 185
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=57.38 E-value=11 Score=38.34 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCC
Q psy10163 369 IPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAA 414 (615)
Q Consensus 369 ~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~ 414 (615)
-|...|-..+-.+-.......++..|.|.+.+....++|.|+|...
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEE
Confidence 4677887543333334456778899999999999999999999865
No 186
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=55.74 E-value=8.8 Score=32.21 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=25.6
Q ss_pred ccccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 132 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 132 ~~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
.+.+.+|+.|.|.|.+.+.|.|.+.|.+++
T Consensus 12 ~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g 41 (92)
T cd05747 12 SLTVSEGESARFSCDVDGEPAPTVTWMREG 41 (92)
T ss_pred cEEEeCCCcEEEEEEEeecCCCEEEEEECC
Confidence 356788999999999999999999997653
No 187
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=53.84 E-value=8.1 Score=35.25 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=28.3
Q ss_pred eEEEeeccccCCceeeecCCCCCCcccccceeeeecc
Q psy10163 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431 (615)
Q Consensus 395 sl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~l~V~~ 431 (615)
+|.|.++...|+|.|.|.+.+..+. ....+.|.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~ 37 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSE 37 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEec
Confidence 6889999999999999998877665 55556666643
No 188
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=52.93 E-value=20 Score=29.62 Aligned_cols=24 Identities=46% Similarity=0.783 Sum_probs=18.4
Q ss_pred CCeeeeeecc-cCCCCCeeeccCCc
Q psy10163 355 GNFVTLRCIA-IGYPIPVYTWSKGE 378 (615)
Q Consensus 355 g~~~tl~C~~-~G~P~P~i~w~k~~ 378 (615)
|+.+++.|.+ .+.|.|.|+|..+.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~ 38 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDG 38 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECC
Confidence 6788999955 58999999997643
No 189
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=52.87 E-value=11 Score=31.36 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=24.7
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|.+.+.|.|.+.|.+++
T Consensus 11 ~~v~~G~~~~l~C~~~g~P~p~i~W~k~g 39 (100)
T cd07693 11 LIVSKGDPATLNCKAEGRPTPTIQWLKNG 39 (100)
T ss_pred eEEcCCCeEEEEeeCCcCCCCEEEEEECC
Confidence 45678999999999999999999997654
No 190
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=51.02 E-value=32 Score=31.24 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=19.4
Q ss_pred CCCeeeeeecccCC-CC-CeeeccCC
Q psy10163 354 EGNFVTLRCIAIGY-PI-PVYTWSKG 377 (615)
Q Consensus 354 eg~~~tl~C~~~G~-P~-P~i~w~k~ 377 (615)
+|+.++|.|.+.|. |. +.|+|.++
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 67788999999996 54 48999874
No 191
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=49.97 E-value=9.4 Score=31.85 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=24.8
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|...+.|.|.+.|.+++
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~ 33 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGD 33 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECC
Confidence 34578889999999999999999997664
No 192
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=49.10 E-value=29 Score=29.25 Aligned_cols=62 Identities=27% Similarity=0.481 Sum_probs=36.0
Q ss_pred CCeeeeeecccCC-CCC-eeeccCCce-eecC-CCCceEEecCCeEE---EeeccccCCceeeecCCCC
Q psy10163 355 GNFVTLRCIAIGY-PIP-VYTWSKGEV-SIDG-SDGHYKLTLDGVLQ---IVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 355 g~~~tl~C~~~G~-P~P-~i~w~k~~~-~l~~-~~g~~~~~~~gsl~---I~~~~~~DsG~Y~C~a~n~ 416 (615)
++.++|.|.+.|. |.+ .|+|.++.. .... .........++... ...+...+...|+|.....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeC
Confidence 5678999999996 554 889987552 2211 11222223344322 2333445777899986543
No 193
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=45.90 E-value=12 Score=31.50 Aligned_cols=29 Identities=34% Similarity=0.684 Sum_probs=24.8
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|...+.|.|.+.|-+++
T Consensus 11 v~v~~G~~v~L~C~v~G~P~p~v~W~k~g 39 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKND 39 (92)
T ss_pred EEEeCCCcEEEEEEEEecCCCeEEEEECC
Confidence 45678999999999999999999997653
No 194
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=45.84 E-value=12 Score=31.25 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=24.9
Q ss_pred ccccCceeeeeeccCCCCCCceeccCCCc
Q psy10163 134 EAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162 (615)
Q Consensus 134 ~~~~g~~v~l~C~~~~~p~p~~~~~~~~~ 162 (615)
.+.+|+.|.|.|.+.+.|.|.+.|..++.
T Consensus 11 ~v~~G~~v~l~C~~~G~P~p~v~W~~~g~ 39 (90)
T cd04972 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGL 39 (90)
T ss_pred EEcCCCcEEEEEEEEEcCCCeEEEEECCE
Confidence 36789999999999999999999977653
No 195
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=45.04 E-value=84 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.566 Sum_probs=17.4
Q ss_pred eeeeeecc-cCCCCCeeeccCC
Q psy10163 357 FVTLRCIA-IGYPIPVYTWSKG 377 (615)
Q Consensus 357 ~~tl~C~~-~G~P~P~i~w~k~ 377 (615)
.....|.+ -|.|.+.|+|.++
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT 38 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC
Confidence 45678988 5999999999875
No 196
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=44.52 E-value=16 Score=31.03 Aligned_cols=28 Identities=39% Similarity=0.653 Sum_probs=24.2
Q ss_pred cccccCceeeeeeccCCCCCCceeccCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
+.+.+|+.|.|.|.+.+.|.|.+.|-+.
T Consensus 11 ~~~~~G~~v~l~C~~~G~P~p~i~W~k~ 38 (98)
T cd05870 11 ETTVENGAATLSCKAEGEPIPEITWKRA 38 (98)
T ss_pred EEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence 4567899999999999999999999654
No 197
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=44.48 E-value=52 Score=28.01 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=20.6
Q ss_pred CCCeeeeeecccCC-CCC-eeeccCCceee
Q psy10163 354 EGNFVTLRCIAIGY-PIP-VYTWSKGEVSI 381 (615)
Q Consensus 354 eg~~~tl~C~~~G~-P~P-~i~w~k~~~~l 381 (615)
+|+.++|.|.+.|. |.. .++|.++...+
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~ 42 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEE 42 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeec
Confidence 56789999999985 544 67997754443
No 198
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=42.82 E-value=28 Score=29.89 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=19.9
Q ss_pred cCCCeeeeeecccCC--CCC-eeeccCCc
Q psy10163 353 EEGNFVTLRCIAIGY--PIP-VYTWSKGE 378 (615)
Q Consensus 353 ~eg~~~tl~C~~~G~--P~P-~i~w~k~~ 378 (615)
..++.++|.|.+.|. |.. .|+|.++.
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~ 40 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGS 40 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECC
Confidence 346789999999999 432 67998853
No 199
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=41.89 E-value=16 Score=30.21 Aligned_cols=30 Identities=37% Similarity=0.679 Sum_probs=25.1
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCCc
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~~ 162 (615)
+.+.+|+.|.|.|.+.+.|.|.+.|.+++.
T Consensus 9 ~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~ 38 (85)
T cd05728 9 TEADIGSSLRWECKASGNPRPAYRWLKNGQ 38 (85)
T ss_pred cEEcCCCcEEEEEEeeEeCCCEEEEEECCE
Confidence 446788999999999999999999976543
No 200
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=40.53 E-value=23 Score=28.88 Aligned_cols=28 Identities=36% Similarity=0.675 Sum_probs=23.4
Q ss_pred ccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 134 EAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 134 ~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
.+.+|+.|.|.|.+.+.|.|.+.|-+++
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g 32 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNG 32 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECC
Confidence 3567889999999999999999996653
No 201
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=39.37 E-value=74 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=17.3
Q ss_pred eeeeeeccc-CCCCCeeeccCC
Q psy10163 357 FVTLRCIAI-GYPIPVYTWSKG 377 (615)
Q Consensus 357 ~~tl~C~~~-G~P~P~i~w~k~ 377 (615)
...+.|.+. |.|.+.|+|.++
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcC
Confidence 456789766 999999999875
No 202
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=38.95 E-value=65 Score=25.88 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=16.8
Q ss_pred eeeeecccCC-CC-CeeeccCCce
Q psy10163 358 VTLRCIAIGY-PI-PVYTWSKGEV 379 (615)
Q Consensus 358 ~tl~C~~~G~-P~-P~i~w~k~~~ 379 (615)
++|.|.+.|. |. ..|+|.|+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~ 25 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQ 25 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCE
Confidence 5789999987 54 5899987543
No 203
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=38.65 E-value=19 Score=29.82 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=25.2
Q ss_pred cccccCceeeeeeccCCCCCC-ceeccCCCc
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIP-VYTWSKGEV 162 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p-~~~~~~~~~ 162 (615)
+.+.+|+.|.|.|.+.+.|.| .+.|.+++.
T Consensus 8 ~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~ 38 (81)
T cd05749 8 LSVTANTPFNLTCQAVGPPEPVEILWWQGGS 38 (81)
T ss_pred eEEcCCCCEEEEEEeeeecCCeEEEEEECCE
Confidence 456788899999999999999 699987753
No 204
>KOG3515|consensus
Probab=37.90 E-value=41 Score=39.50 Aligned_cols=73 Identities=26% Similarity=0.318 Sum_probs=52.8
Q ss_pred cccCCCeeeeeecccCCC-CCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCccccccee
Q psy10163 351 EAEEGNFVTLRCIAIGYP-IPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFN 426 (615)
Q Consensus 351 ~~~eg~~~tl~C~~~G~P-~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~~~~~ 426 (615)
.+.+|+.+.|.|.+.++| .+.+.|-+..--. .+++....+..|+..+....--++|.|.+.|..+.+....+.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~ 91 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGE---HGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMI 91 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCccc---ccccccccCCceeeecchhhhhhhhhhhhcccccCceeccee
Confidence 677899999999998776 6689996632111 166777777777777777777778889888887775554433
No 205
>KOG1480|consensus
Probab=37.83 E-value=18 Score=42.07 Aligned_cols=84 Identities=30% Similarity=0.450 Sum_probs=61.6
Q ss_pred ccCCCeeeeee-cccCCCCCeeeccCCceeecCCCCceEEecCCeEEEeeccccCCceeeecCCCCCCcccc--cceeee
Q psy10163 352 AEEGNFVTLRC-IAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIR--KEFNVI 428 (615)
Q Consensus 352 ~~eg~~~tl~C-~~~G~P~P~i~w~k~~~~l~~~~g~~~~~~~gsl~I~~~~~~DsG~Y~C~a~n~~G~p~~--~~~~l~ 428 (615)
+.++...++.| ...+.|.-.+.|.|...+++. +.+.+...+..+.|..+...|.+.|.|.+.|-++.... +.+.+-
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 33455566665 567899999999998888876 67778888899999999999999999999998775222 223334
Q ss_pred ecccceee
Q psy10163 429 VRGNYEQW 436 (615)
Q Consensus 429 V~~~~~~w 436 (615)
|++.+..|
T Consensus 220 v~ggwssw 227 (909)
T KOG1480|consen 220 VNGGWSEW 227 (909)
T ss_pred EcCccccc
Confidence 45544444
No 206
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=37.14 E-value=35 Score=29.42 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=24.8
Q ss_pred CccccccCceeeeeec-cCCCCCCceeccCC
Q psy10163 131 PTVEAEEGNFVTLRCI-AIGYPIPVYTWSKG 160 (615)
Q Consensus 131 C~~~~~~g~~v~l~C~-~~~~p~p~~~~~~~ 160 (615)
=.+.+.+|..+.|+|. ..+.|-|.++|-..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~ 41 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNS 41 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECC
Confidence 3466789999999996 78999999999643
No 207
>PHA02633 hypothetical protein; Provisional
Probab=36.89 E-value=29 Score=27.55 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=20.0
Q ss_pred CCeEEEeeccccCCceeeecCCCC
Q psy10163 393 DGVLQIVGLVRQDAGIYVCVAANG 416 (615)
Q Consensus 393 ~gsl~I~~~~~~DsG~Y~C~a~n~ 416 (615)
...|-|.+....|+|+|+|.-.|+
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~ 40 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNE 40 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCC
Confidence 346778888899999999998876
No 208
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=36.84 E-value=20 Score=29.63 Aligned_cols=29 Identities=41% Similarity=0.785 Sum_probs=24.2
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|.+.+.|.|.+.|.+.+
T Consensus 11 ~~~~~g~~v~l~C~~~g~P~p~v~W~k~~ 39 (88)
T cd04968 11 TYALKGQNVTLECFALGNPVPQIKWRKVD 39 (88)
T ss_pred eEEeCCCcEEEEEEeeEeCCCEEEEEECC
Confidence 34568889999999999999999997654
No 209
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=36.43 E-value=21 Score=29.95 Aligned_cols=29 Identities=45% Similarity=0.751 Sum_probs=24.7
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+..|+.|.|.|.+.+.|.|.+.|.+++
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g 41 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDG 41 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECC
Confidence 34678999999999999999999997654
No 210
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=36.36 E-value=20 Score=28.91 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.2
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.+.|.|.+.+.|.|.+.|.+++
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g 24 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNG 24 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECC
Confidence 345789999999999999997754
No 211
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=36.25 E-value=24 Score=28.19 Aligned_cols=28 Identities=39% Similarity=0.714 Sum_probs=22.9
Q ss_pred ccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 134 EAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 134 ~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
....|+.|.|.|.+.+.|.|.+.|-+++
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~ 32 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDN 32 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECC
Confidence 3456888999999999999999886553
No 212
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=35.28 E-value=30 Score=27.34 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=18.8
Q ss_pred CceeeeeeccCCCCCCceeccC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSK 159 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~ 159 (615)
|+.|.|+|...+.|.|.+.|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~ 22 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWIS 22 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEe
Confidence 4568899999999999999964
No 213
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=35.17 E-value=24 Score=29.99 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.8
Q ss_pred cccccCceeeeeeccCCCCCC-ceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIP-VYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p-~~~~~~~~ 161 (615)
+.+.+|+.|.|.|.+.+.|.| .+.|..++
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~ 40 (98)
T cd05758 11 QYAILGDKGRVECFIFSTPPPDRIVWTWKE 40 (98)
T ss_pred EEEeCCCcEEEEEEEcccCCCCEeEEEECC
Confidence 446789999999999999999 58886554
No 214
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=35.01 E-value=53 Score=28.09 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=34.5
Q ss_pred CCCeeeeeecccCCCCC--eeeccCCceeecC-CCCceEEecCCeEEEe---eccccCCceeeecCC
Q psy10163 354 EGNFVTLRCIAIGYPIP--VYTWSKGEVSIDG-SDGHYKLTLDGVLQIV---GLVRQDAGIYVCVAA 414 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P--~i~w~k~~~~l~~-~~g~~~~~~~gsl~I~---~~~~~DsG~Y~C~a~ 414 (615)
.|...+|.|.+.|+-.+ .|+|.++...+.. .....+...+++.++. .+.+.+...|.|...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~ 80 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVR 80 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEE
Confidence 45567899999996433 5799875544321 1122333344443332 234556666888754
No 215
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=34.93 E-value=24 Score=27.93 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=19.7
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.|.|.|.+.+.|.|.+.|..++
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g 24 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNG 24 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECC
Confidence 456889999999999999996543
No 216
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=34.66 E-value=26 Score=29.69 Aligned_cols=25 Identities=36% Similarity=0.810 Sum_probs=21.8
Q ss_pred cCceeeeeeccCCCCCCceeccCCC
Q psy10163 137 EGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 137 ~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+|..|.|.|.+.+.|.|.+.|.+++
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g 42 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNG 42 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECC
Confidence 5778999999999999999997654
No 217
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=34.41 E-value=26 Score=29.28 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.5
Q ss_pred CceeeeeeccCCCCCCceeccCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
|+.|.|+|.+.+.|.|.+.|-+.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEe
Confidence 34578999999999999999764
No 218
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=33.94 E-value=23 Score=28.58 Aligned_cols=23 Identities=35% Similarity=0.899 Sum_probs=19.3
Q ss_pred CceeeeeeccCCCCCCceeccCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
|+.|.|.|.+.+.|.|.+.|..+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~ 23 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLN 23 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEEC
Confidence 45688999999999999999654
No 219
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=33.16 E-value=25 Score=28.16 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=19.8
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.|.|.|.+.+.|.|.+.|.+++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g 24 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSING 24 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECC
Confidence 456889999999999999997553
No 220
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=33.03 E-value=26 Score=29.23 Aligned_cols=29 Identities=41% Similarity=0.625 Sum_probs=24.1
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|.+.+.|.|.+.|-+.+
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~ 39 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIPEITWRRAT 39 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCCcEEEEECC
Confidence 45578889999999999999999986543
No 221
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=32.40 E-value=33 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.0
Q ss_pred ccCceeeeeeccCCCCCCceeccCCC
Q psy10163 136 EEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 136 ~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.|..|.|.|.+.+.|.|.++|.+++
T Consensus 21 ~~g~~v~L~C~a~G~P~p~i~W~k~g 46 (109)
T cd05773 21 DGSSDANLVCQAQGVPRVQFRWAKNG 46 (109)
T ss_pred CCCCEEEEEEECcccCCCEEEEEECC
Confidence 35678999999999999999997664
No 222
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=31.84 E-value=23 Score=28.03 Aligned_cols=21 Identities=38% Similarity=0.871 Sum_probs=17.9
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|+|.+.+.|.|.+.|.+.+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~ 21 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRID 21 (71)
T ss_pred CEEEEEeeEecCCeEEEEECC
Confidence 468999999999999997664
No 223
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=31.43 E-value=22 Score=28.78 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=18.8
Q ss_pred eeeeeccCCCCCCceeccCCCc
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGEV 162 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~~ 162 (615)
|.|+|...+.|.|.+.|.+++.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~ 22 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENE 22 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCE
Confidence 5799999999999999977643
No 224
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=31.33 E-value=2e+02 Score=24.93 Aligned_cols=29 Identities=38% Similarity=0.636 Sum_probs=21.9
Q ss_pred CcccccCCCeeee-eecc-cCCCCCeeeccC
Q psy10163 348 PTVEAEEGNFVTL-RCIA-IGYPIPVYTWSK 376 (615)
Q Consensus 348 ~~v~~~eg~~~tl-~C~~-~G~P~P~i~w~k 376 (615)
..+.+.+|+.+.+ .|.+ .|.|.+.|+|..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~ 39 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWET 39 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeC
Confidence 3455667777777 7865 599999999985
No 225
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=31.15 E-value=35 Score=27.43 Aligned_cols=24 Identities=38% Similarity=0.830 Sum_probs=19.9
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|..|.|+|.+.+.|.|.+.|-+++
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~ 24 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGT 24 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCC
Confidence 446789999999999999997654
No 226
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=30.78 E-value=33 Score=28.53 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.3
Q ss_pred CceeeeeeccCCCCCCceeccCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
|+.|.|.|.+.+.|.|.+.|-+.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 45689999999999999999653
No 227
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=30.01 E-value=26 Score=27.77 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=18.9
Q ss_pred eeeeeccCCCCCCceeccCCCc
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGEV 162 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~~ 162 (615)
|.|+|.+.+.|.|.+.|.+++.
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~ 23 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGD 23 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCe
Confidence 6799999999999999977643
No 228
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=30.00 E-value=34 Score=27.11 Aligned_cols=24 Identities=38% Similarity=0.755 Sum_probs=19.8
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.|.|.|.+.+.|.|.+.|.+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~ 24 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGT 24 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECC
Confidence 456889999999999999997654
No 229
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=29.91 E-value=31 Score=27.86 Aligned_cols=21 Identities=29% Similarity=0.953 Sum_probs=18.1
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|.|.+.+.|.|.+.|.+++
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g 21 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNG 21 (77)
T ss_pred CEEEeeCcccCCCeEEEEECC
Confidence 568999999999999997764
No 230
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=29.54 E-value=36 Score=29.11 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.0
Q ss_pred cccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|...+.|.|.+.|.+++
T Consensus 10 ~~v~~G~~v~l~C~~~G~p~p~v~W~kdg 38 (98)
T cd05762 10 MKVRAGESVELFCKVTGTQPITCTWMKFR 38 (98)
T ss_pred EEEECCCEEEEEEEEcccCCCceEEEECC
Confidence 44678999999999999999999997664
No 231
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=28.99 E-value=30 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=25.8
Q ss_pred ccccccCceeeeeeccCC-CCCCceeccCCCc
Q psy10163 132 TVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEV 162 (615)
Q Consensus 132 ~~~~~~g~~v~l~C~~~~-~p~p~~~~~~~~~ 162 (615)
.+.+.+|+.|.|.|...+ .|.|.+.|.+++.
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~ 43 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNR 43 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCe
Confidence 355678999999999999 8999999977653
No 232
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=28.42 E-value=31 Score=29.15 Aligned_cols=25 Identities=44% Similarity=0.739 Sum_probs=21.1
Q ss_pred ccCceeeeeeccCCCCCCceeccCC
Q psy10163 136 EEGNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 136 ~~g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
+.|+.|.|.|.+.+.|.|.+.|-..
T Consensus 15 ~~g~~v~l~C~~~G~P~P~v~W~~~ 39 (97)
T cd05869 15 ELEEQITLTCEASGDPIPSITWRTS 39 (97)
T ss_pred EcCCCEEEEEEeeEeCCCEEEEEEC
Confidence 4467899999999999999999654
No 233
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=28.08 E-value=42 Score=26.81 Aligned_cols=23 Identities=35% Similarity=0.733 Sum_probs=19.0
Q ss_pred CceeeeeeccCCCCCCceeccCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
|+.|.|.|.+.+.|.|.+.|-+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~ 23 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQ 23 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEec
Confidence 45688999999999999888654
No 234
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=27.57 E-value=31 Score=27.12 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=17.7
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|.|.+.+.|.|.+.|.+++
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g 21 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDG 21 (69)
T ss_pred CEeEecceEeCCCEEEEEECC
Confidence 578999999999999997654
No 235
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=27.49 E-value=1.5e+02 Score=26.11 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=21.5
Q ss_pred cCCCeeeeeecccCC-CC-CeeeccCCceee
Q psy10163 353 EEGNFVTLRCIAIGY-PI-PVYTWSKGEVSI 381 (615)
Q Consensus 353 ~eg~~~tl~C~~~G~-P~-P~i~w~k~~~~l 381 (615)
..|+.++|.|.+.|. |. -.|+|.++...+
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~ 49 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNEL 49 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEEC
Confidence 356779999999986 53 488998755444
No 236
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=27.18 E-value=41 Score=28.40 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.6
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|..|.|.|.+.+.|.|.+.|.+++
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g 42 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNG 42 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECC
Confidence 457999999999999999997654
No 237
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=27.15 E-value=30 Score=28.07 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=18.1
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|+|...+.|.|.+.|-+++
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~ 21 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNN 21 (75)
T ss_pred CEEEEEEEecCCCeEEEEECC
Confidence 568999999999999997664
No 238
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=26.59 E-value=46 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.2
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.|.|.|.+.+.|.|.+.|.+++
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~ 24 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKED 24 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCC
Confidence 456889999999999999997654
No 239
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=26.23 E-value=52 Score=27.26 Aligned_cols=24 Identities=42% Similarity=0.783 Sum_probs=19.7
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|+.|.|.|.+.+.|.|.+.|.+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g 24 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEG 24 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCC
Confidence 456889999999999999996553
No 240
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=25.84 E-value=88 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=19.0
Q ss_pred CCCeeeeeecccCCCCC--eeeccCCce
Q psy10163 354 EGNFVTLRCIAIGYPIP--VYTWSKGEV 379 (615)
Q Consensus 354 eg~~~tl~C~~~G~P~P--~i~w~k~~~ 379 (615)
.++.++|.|.+.|+-.+ .|+|.++..
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~ 42 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQ 42 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCE
Confidence 35689999999996444 469977543
No 241
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=25.74 E-value=46 Score=27.89 Aligned_cols=27 Identities=41% Similarity=0.642 Sum_probs=23.1
Q ss_pred cccCceeeeeeccCCCCCCceeccCCC
Q psy10163 135 AEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 135 ~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
+.+|..|.|.|.+.+.|.|.+.|.+++
T Consensus 11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g 37 (95)
T cd05722 11 AVRGGPVVLNCSAEGEPPPKIEWKKDG 37 (95)
T ss_pred EcCCCCEEEeeecccCCCCEEEEEECC
Confidence 456888999999999999999997764
No 242
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=25.58 E-value=40 Score=28.28 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=23.9
Q ss_pred ccccccCceeeeeeccCCCCCCceeccCC
Q psy10163 132 TVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160 (615)
Q Consensus 132 ~~~~~~g~~v~l~C~~~~~p~p~~~~~~~ 160 (615)
.+.+.+|+.|.|.|...+.|.|.+.|-+.
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~ 38 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKN 38 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEEC
Confidence 35668999999999988889998888554
No 243
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=24.88 E-value=37 Score=27.30 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.1
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|+|...+.|.|.+.|-+++
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~ 21 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNN 21 (75)
T ss_pred CEEEEEEeecCCCeEEEEECC
Confidence 478999999999999997664
No 244
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=24.79 E-value=46 Score=26.45 Aligned_cols=20 Identities=40% Similarity=0.850 Sum_probs=17.3
Q ss_pred eeeeccCCCCCCceeccCCC
Q psy10163 142 TLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 142 ~l~C~~~~~p~p~~~~~~~~ 161 (615)
.|.|.+.+.|.|.+.|.+++
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~ 21 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDG 21 (75)
T ss_pred EeEeecccccCCEEEEEeCC
Confidence 58899999999999997664
No 245
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=23.75 E-value=1.2e+02 Score=25.82 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=18.3
Q ss_pred CCeeeeeecccCC-CC-CeeeccCCcee
Q psy10163 355 GNFVTLRCIAIGY-PI-PVYTWSKGEVS 380 (615)
Q Consensus 355 g~~~tl~C~~~G~-P~-P~i~w~k~~~~ 380 (615)
+..++|.|.+.|+ |. -.|+|.++...
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~ 42 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVP 42 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeE
Confidence 4557999999996 43 36799875433
No 246
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=23.68 E-value=41 Score=27.11 Aligned_cols=21 Identities=48% Similarity=0.990 Sum_probs=17.4
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|.|.+.+.|.|.+.|-+..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~ 21 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSK 21 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECC
Confidence 468999999999999996543
No 247
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=23.58 E-value=47 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.904 Sum_probs=18.6
Q ss_pred eeeeeccCCCCCCceeccCCCc
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGEV 162 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~~ 162 (615)
|.|.|.+.+.|.|.+.|.+++.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~ 22 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGK 22 (77)
T ss_pred CEEEEeccccCCCEEEEEECCE
Confidence 4689999999999999987653
No 248
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=23.32 E-value=61 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=24.5
Q ss_pred CccccccCceeeeeeccCCCCCCceeccCCC
Q psy10163 131 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 131 C~~~~~~g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
-.+.+.+|+.|.|.|.+.+. .|.+.|.+++
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng 40 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNG 40 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECC
Confidence 45678899999999999998 8888886553
No 249
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=23.18 E-value=48 Score=26.88 Aligned_cols=21 Identities=29% Similarity=0.907 Sum_probs=17.9
Q ss_pred eeeeeccCCCCCCceeccCCC
Q psy10163 141 VTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 141 v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|.|.|.+.+.|.|.+.|-+++
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g 21 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNG 21 (77)
T ss_pred CEEEeeCcccCCCeEEEEECC
Confidence 468999999999999997654
No 250
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=22.39 E-value=63 Score=26.11 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=22.7
Q ss_pred cccccCceeeeeecc-CCCCCCceeccCCC
Q psy10163 133 VEAEEGNFVTLRCIA-IGYPIPVYTWSKGE 161 (615)
Q Consensus 133 ~~~~~g~~v~l~C~~-~~~p~p~~~~~~~~ 161 (615)
+.+.+|+.|.|.|.+ .+.|.|.+.|.+++
T Consensus 6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g 35 (86)
T cd05724 6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDG 35 (86)
T ss_pred EEEeCCCCEEEEEECCCCCCCCEEEEEECC
Confidence 345688899999987 67899988886553
No 251
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=22.06 E-value=1.4e+02 Score=26.71 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=36.5
Q ss_pred ccccCCCeeeeeecccCCCCC---eeeccCCcee-----ec---------CCCCceEEecC-----CeEEEeeccccCCc
Q psy10163 350 VEAEEGNFVTLRCIAIGYPIP---VYTWSKGEVS-----ID---------GSDGHYKLTLD-----GVLQIVGLVRQDAG 407 (615)
Q Consensus 350 v~~~eg~~~tl~C~~~G~P~P---~i~w~k~~~~-----l~---------~~~g~~~~~~~-----gsl~I~~~~~~DsG 407 (615)
+.+..|+.++|.|.+.|.--. .++|-|+..- .. ...+++....+ -.|.+.++...|.+
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 445567789999988665433 4667442111 00 11122222211 15788888889999
Q ss_pred eeeecC
Q psy10163 408 IYVCVA 413 (615)
Q Consensus 408 ~Y~C~a 413 (615)
.|.|..
T Consensus 88 ~Y~Ca~ 93 (115)
T cd05721 88 IYFCKI 93 (115)
T ss_pred EEEEEe
Confidence 999864
No 252
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=21.63 E-value=60 Score=27.40 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=20.3
Q ss_pred CceeeeeeccCCCCCCceeccCCC
Q psy10163 138 GNFVTLRCIAIGYPIPVYTWSKGE 161 (615)
Q Consensus 138 g~~v~l~C~~~~~p~p~~~~~~~~ 161 (615)
|..|.|.|.+.+.|.|.+.|.+++
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~ 42 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNN 42 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECC
Confidence 346899999999999999997654
Done!