RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10163
(615 letters)
>2ody_E Boophilin; kunitz-type thrombin inhibitor, blood clotting-blood
clottin inhibitor complex; HET: NAG; 2.35A
{Rhipicephalus microplus}
Length = 127
Score = 116 bits (293), Expect = 4e-31
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPPPDPAQTPSTTLAP 489
+ ++Y++ +T C F YGGC GN N F CQK C D
Sbjct: 16 KALIPRFYFNTETGKCTMFSYGGCGGNENNFETIEECQKACGAPERVNDFESAD------ 69
Query: 490 RQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
C ++SG C Q W+++ + C++F+YGGC GN N + +EE+CE +C
Sbjct: 70 -----FKTGCEPAADSGSCAGQLERWFYNVQSGECETFVYGGCGGNDNNYESEEECELVC 124
Query: 550 G 550
Sbjct: 125 K 125
Score = 75.3 bits (185), Expect = 2e-16
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARC 98
C PA G C + +Y+++ +C F YGGCGGN+NNF T E CQ C
Sbjct: 4 GFCRLPADEGICKALIPRFYFNTETGKCTMFSYGGCGGNENNFETIEECQKAC 56
Score = 73.4 bits (180), Expect = 7e-16
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
RN C L ++ G C +YF+ T +C F YGGC GN N F T E+C++ CG
Sbjct: 2 RNGFCRLPADEGICKALIPRFYFNTETGKCTMFSYGGCGGNENNFETIEECQKACG 57
Score = 60.7 bits (147), Expect = 2e-11
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 34/97 (35%)
Query: 4 CFLQFIAKDICLQPAVIGDCANYVLTWYYDSNTSCFPQFIAKDICLQPAVIGDCANYVLT 63
F K C A G CA + W+Y+ +
Sbjct: 64 DFESADFKTGCEPAADSGSCAGQLERWFYNVQSG-------------------------- 97
Query: 64 WYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
C F YGGCGGN NN+ +EE C+ C
Sbjct: 98 --------ECETFVYGGCGGNDNNYESEEECELVCKN 126
Score = 29.8 bits (67), Expect = 1.2
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 6/72 (8%)
Query: 175 NDLCFLESESGPCTQQEAAWYFDRNSFITMPEL------TPNTFLFQWTCVISGKNARCR 228
N C L ++ G C +YF+ + N F C +
Sbjct: 3 NGFCRLPADEGICKALIPRFYFNTETGKCTMFSYGGCGGNENNFETIEECQKACGAPERV 62
Query: 229 CFNPCQNQDPQC 240
+ C
Sbjct: 63 NDFESADFKTGC 74
>1bik_A Bikunin; glycoprotein, trypstatin, urinary trypsin inhibitor
acid-rich protein, serine protease inhibitor (kunitz
type), glycosylated protein; HET: NAG; 2.50A {Homo
sapiens} SCOP: g.8.1.1 g.8.1.1
Length = 147
Score = 103 bits (258), Expect = 3e-26
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 23/128 (17%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPPPDPAQTPSTTLAP 489
G +++Y+ + +C+ FQYGGC GN N F + C + C P
Sbjct: 36 MGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTCRTVAACNLPIVR------- 88
Query: 490 RQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
GPC W FD +C F YGGC+GN N+F +E++C C
Sbjct: 89 ----------------GPCRAFIQLWAFDAVKGKCVLFPYGGCQGNGNKFYSEKECREYC 132
Query: 550 GEFRAEDP 557
G D
Sbjct: 133 GVPGDGDE 140
Score = 78.9 bits (194), Expect = 1e-17
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 11 KDICLQPAVIGDCANYVLTWYYDSNT-SCFP-----------QFIAKDICLQ-------- 50
+D C G C ++Y+ + +C F+ + CLQ
Sbjct: 23 EDSCQLGYSAGPCMGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTCRTVAAC 82
Query: 51 --PAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
P V G C ++ W +D+++ +C F YGGC GN N F +E+ C+ C
Sbjct: 83 NLPIVRGPCRAFIQLWAFDAVKGKCVLFPYGGCQGNGNKFYSEKECREYCGV 134
Score = 75.8 bits (186), Expect = 2e-16
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 477 PDPAQTPSTTLAPRQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNA 536
P + + + D C L +GPC + ++++ + C++F YGGC GN
Sbjct: 4 PQEEEGSGGGQLVTEVTKKEDSCQLGYSAGPCMGMTSRYFYNGTSMACETFQYGGCMGNG 63
Query: 537 NRFNTEEQCERLCGEF 552
N F TE++C + C
Sbjct: 64 NNFVTEKECLQTCRTV 79
Score = 75.8 bits (186), Expect = 2e-16
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 33 DSNTSCFPQFIAKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEE 92
+D C G C ++Y+ C F YGGC GN NNF+TE+
Sbjct: 11 GGGQLVTEVTKKEDSCQLGYSAGPCMGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEK 70
Query: 93 ACQARC 98
C C
Sbjct: 71 ECLQTC 76
Score = 27.6 bits (61), Expect = 6.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 173 SANDLCFLESESGPCTQQEAAWYFDRNS 200
D C L +GPC + ++++ S
Sbjct: 21 KKEDSCQLGYSAGPCMGMTSRYFYNGTS 48
>1dtk_A Dendrotoxin K; presynaptic neurotoxin; NMR {Dendroaspis polylepis
polylepis} SCOP: g.8.1.1
Length = 57
Score = 88.1 bits (219), Expect = 6e-22
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 44 AKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
A C P IG C + ++YY +C F Y GCGGN N F T E C+ C G
Sbjct: 1 AAKYCKLPLRIGPCKRKIPSFYYKWKAKQCLPFDYSGCGGNANRFKTIEECRRTCVG 57
Score = 79.6 bits (197), Expect = 7e-19
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 497 DLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
C L GPC ++ ++Y+ +C F Y GC GNANRF T E+C R C
Sbjct: 3 KYCKLPLRIGPCKRKIPSFYYKWKAKQCLPFDYSGCGGNANRFKTIEECRRTC 55
Score = 61.1 bits (149), Expect = 2e-12
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCV 471
+ +YY C PF Y GC GN NRF C++ CV
Sbjct: 15 KRKIPSFYYKWKAKQCLPFDYSGCGGNANRFKTIEECRRTCV 56
Score = 31.5 bits (72), Expect = 0.081
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 174 ANDLCFLESESGPCTQQEAAWYFDRNS 200
A C L GPC ++ ++Y+ +
Sbjct: 1 AAKYCKLPLRIGPCKRKIPSFYYKWKA 27
>1aap_A Alzheimer'S disease amyloid A4 protein; proteinase inhibitor
(trypsin); 1.50A {Homo sapiens} SCOP: g.8.1.1 PDB:
1taw_B 1brc_I 1zjd_B 3l3t_E 1ca0_D 3l33_E
Length = 58
Score = 86.1 bits (214), Expect = 4e-21
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101
+++C + A G C + WY+D E +C F+YGGCGGN+NNF TEE C A C
Sbjct: 2 REVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSA 58
Score = 80.0 bits (198), Expect = 4e-19
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 497 DLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
++C ++E+GPC + WYFD +C F YGGC GN N F+TEE C +CG
Sbjct: 3 EVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCG 56
Score = 60.7 bits (148), Expect = 4e-12
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
R +WY+D C PF YGGC GN N F+ + C C
Sbjct: 15 RAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVC 55
Score = 29.1 bits (66), Expect = 0.49
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
++C ++E+GPC + WYFD
Sbjct: 3 EVCSEQAETGPCRAMISRWYFDVTE 27
>3byb_A Textilinin, textilinin-1; BPTI-like, beta hairpin, kunitz-type
protease inhibitor, trypsin, plasmin, hydrolase
inhibitor; 1.63A {Pseudonaja textilis textilis} PDB:
3d65_I
Length = 59
Score = 85.8 bits (213), Expect = 6e-21
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
D C PA G C ++YY+ E +C +F YGGC GN NNF+T+E C++ CA
Sbjct: 4 PDFCELPADTGPCRVRFPSFYYNPDEKKCLEFIYGGCEGNANNFITKEECESTCAA 59
Score = 81.9 bits (203), Expect = 1e-19
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
R D C L +++GPC + ++Y++ + +C FIYGGCEGNAN F T+E+CE C
Sbjct: 3 RPDFCELPADTGPCRVRFPSFYYNPDEKKCLEFIYGGCEGNANNFITKEECESTCA 58
Score = 60.4 bits (147), Expect = 4e-12
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
R + +YY+ D C F YGGC+GN N F + C+ C
Sbjct: 17 RVRFPSFYYNPDEKKCLEFIYGGCEGNANNFITKEECESTC 57
Score = 29.9 bits (68), Expect = 0.28
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
D C L +++GPC + ++Y++ +
Sbjct: 5 DFCELPADTGPCRVRFPSFYYNPDE 29
>1irh_A Tissue factor pathway inhibitor; non-protease inhibitor, kunitz
domain, protein binding; NMR {Homo sapiens} SCOP:
g.8.1.1
Length = 61
Score = 85.4 bits (212), Expect = 7e-21
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 41 QFIAKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
+F CL PA G C +YY+S+ +CR F Y GCGGN+NNF +++ C C
Sbjct: 1 EFHGPSWCLTPADRGLCRANENRFYYNSVIGKCRPFKYSGCGGNENNFTSKQECLRACKK 60
Query: 101 G 101
G
Sbjct: 61 G 61
Score = 80.4 bits (199), Expect = 4e-19
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 492 EAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGE 551
E C ++ G C E +Y++ +C+ F Y GC GN N F ++++C R C +
Sbjct: 1 EFHGPSWCLTPADRGLCRANENRFYYNSVIGKCRPFKYSGCGGNENNFTSKQECLRACKK 60
Score = 61.9 bits (151), Expect = 2e-12
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
R N ++YY+ C+PF+Y GC GN N F + C + C +
Sbjct: 18 RANENRFYYNSVIGKCRPFKYSGCGGNENNFTSKQECLRACKK 60
Score = 29.2 bits (66), Expect = 0.48
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
C ++ G C E +Y++
Sbjct: 6 SWCLTPADRGLCRANENRFYYNSVI 30
>1dtx_A Alpha-dendrotoxin; presynaptic neurotoxin; 2.20A {Dendroaspis
angusticeps} SCOP: g.8.1.1 PDB: 1dem_A 1den_A
Length = 59
Score = 85.0 bits (211), Expect = 8e-21
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
+ +C+ G C + + +YY+ + +C +F + GCGGN N F T E C+ C G
Sbjct: 4 RKLCILHRNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTCIG 59
Score = 81.2 bits (201), Expect = 2e-19
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
R LC L G C + A+Y+++ +C+ F + GC GN+NRF T E+C R C
Sbjct: 3 RRKLCILHRNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTC 57
Score = 60.7 bits (148), Expect = 3e-12
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCV 471
+YY++ C+ F + GC GN NRF C++ C+
Sbjct: 17 YDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTCI 58
Score = 29.5 bits (67), Expect = 0.37
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
LC L G C + A+Y+++
Sbjct: 5 KLCILHRNPGRCYDKIPAFYYNQKK 29
>1zr0_B TFPI-2, tissue factor pathway inhibitor 2, PP5; serine protease,
complex of serine protease/inhibitor, kunitz type
inhibitor; 1.80A {Homo sapiens} SCOP: g.8.1.1
Length = 63
Score = 85.0 bits (211), Expect = 1e-20
Identities = 29/59 (49%), Positives = 32/59 (54%)
Query: 40 PQFIAKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARC 98
P +ICL P G C +L +YYD CRQF YGGC GN NNF T EAC C
Sbjct: 1 PTGNNAEICLLPLDYGPCRALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDAC 59
Score = 81.2 bits (201), Expect = 2e-19
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 493 AARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGEF 552
++C L + GPC +Y+DR T C+ F+YGGCEGNAN F T E C+ C
Sbjct: 3 GNNAEICLLPLDYGPCRALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDACWRI 62
Score = 61.2 bits (149), Expect = 3e-12
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
R ++YYDR T SC+ F YGGC+GN N F +C C +
Sbjct: 19 RALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDACWR 61
Score = 29.2 bits (66), Expect = 0.55
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
++C L + GPC +Y+DR +
Sbjct: 7 EICLLPLDYGPCRALLLRYYYDRYT 31
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine
protease/inhibitor), hydrolase/hydrolase inhibitor
complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Length = 99
Score = 86.1 bits (213), Expect = 1e-20
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 35 NTSCFPQFIAKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEAC 94
+TS + D CL+P G C ++ ++Y++ C+ F YGGC +NNF + E C
Sbjct: 26 DTSNQAKAQRPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDC 85
Query: 95 QARCAGGT 102
C G
Sbjct: 86 MRTCGGAI 93
Score = 83.4 bits (206), Expect = 1e-19
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 482 TPSTTLAPRQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNT 541
TP + + +A R D C +GPC + ++++ CQ+F+YGGC N F +
Sbjct: 22 TPGCDTSNQAKAQRPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKS 81
Query: 542 EEQCERLCGEFRA 554
E C R CG
Sbjct: 82 AEDCMRTCGGAIG 94
Score = 62.2 bits (151), Expect = 3e-12
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPP 476
+ +++Y+ CQ F YGGC+ N F C + C I P
Sbjct: 49 KARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGAIGP 95
Score = 29.4 bits (66), Expect = 0.80
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
D C +GPC + ++++ +
Sbjct: 37 DFCLEPPYTGPCKARIIRYFYNAKA 61
>1kth_A Collagen alpha 3(VI) chain; anisotropic refinement, kunitz
inhibitor, extracellular matrix, connective tissue,
structural protein; 0.95A {Homo sapiens} SCOP: g.8.1.1
PDB: 1knt_A 1kun_A 2knt_A
Length = 58
Score = 84.6 bits (210), Expect = 1e-20
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
DIC P G C +++L WYYD C +F+YGGCGGN+N F +++ C+ CA
Sbjct: 3 DICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAP 57
Score = 80.4 bits (199), Expect = 3e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 496 NDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
D+C L + G C WY+D NT C F YGGC GN N+F ++++CE++C
Sbjct: 2 TDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCA 56
Score = 60.0 bits (146), Expect = 6e-12
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
R +WYYD +T SC F YGGC GN N+F Q C+K C
Sbjct: 15 RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVC 55
Score = 29.9 bits (68), Expect = 0.22
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 175 NDLCFLESESGPCTQQEAAWYFDRNS 200
D+C L + G C WY+D N+
Sbjct: 2 TDICKLPKDEGTCRDFILKWYYDPNT 27
>1g6x_A Pancreatic trypsin inhibitor; serine protease inhibitor, hydrolase
inhibitor; 0.86A {Bos taurus} SCOP: g.8.1.1 PDB: 1k6u_A
1qlq_A 4tpi_I 1ld5_A 3btq_I 3bth_I 1t8m_B 5pti_A 1b0c_A
1bhc_A* 1bth_P 1bz5_A 1bzx_I 1cbw_D 1d0d_B 1eaw_B 1fy8_I
1mtn_D 1oa5_5 1oa6_5 ...
Length = 58
Score = 84.6 bits (210), Expect = 1e-20
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101
D CL+P G C ++ ++Y++ C+ F YGGC +NNF + E C C G
Sbjct: 3 DFCLEPPYAGACRARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCLRTCGGA 58
Score = 82.3 bits (204), Expect = 7e-20
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
R D C +G C + ++++ CQ+F+YGGC N F + E C R CG
Sbjct: 1 RPDFCLEPPYAGACRARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCLRTCG 56
Score = 60.3 bits (147), Expect = 4e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
R +++Y+ CQ F YGGC+ N F C + C
Sbjct: 15 RARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCLRTC 55
Score = 29.5 bits (67), Expect = 0.36
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
D C +G C + ++++ +
Sbjct: 3 DFCLEPPYAGACRARIIRYFYNAKA 27
>1bf0_A Calcicludine; calcium channel blocker; NMR {Dendroaspis
angusticeps} SCOP: g.8.1.1
Length = 60
Score = 84.2 bits (209), Expect = 2e-20
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 42 FIAKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
+ C +P IG C ++Y+ +C F + GCGGN N F T C+ +C G
Sbjct: 1 WQPPWYCKEPVRIGSCKKQFSSFYFKWTAKKCLPFLFSGCGGNANRFQTIGECRKKCLG 59
Score = 79.2 bits (196), Expect = 1e-18
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 497 DLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
C G C +Q +++YF +C F++ GC GNANRF T +C + C
Sbjct: 5 WYCKEPVRIGSCKKQFSSFYFKWTAKKCLPFLFSGCGGNANRFQTIGECRKKC 57
Score = 61.1 bits (149), Expect = 2e-12
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCV 471
+ + +Y+ C PF + GC GN NRF C+K+C+
Sbjct: 17 KKQFSSFYFKWTAKKCLPFLFSGCGGNANRFQTIGECRKKCL 58
Score = 29.2 bits (66), Expect = 0.46
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
C G C +Q +++YF +
Sbjct: 5 WYCKEPVRIGSCKKQFSSFYFKWTA 29
>3m7q_B Kunitz-type proteinase inhibitor SHPI-1; trypsin-inhibitor complex,
kunitz-type serine-protease inhib digestion, disulfide
bond; 1.70A {Stichodactyla helianthus} PDB: 3ofw_A
1shp_A
Length = 61
Score = 84.2 bits (209), Expect = 2e-20
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 44 AKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
IC +P +G C Y +Y+DS +C F YGGCGGN NNF T C+A C
Sbjct: 3 EASICSEPKKVGRCKGYFPRFYFDSETGKCTPFIYGGCGGNGNNFETLHQCRAICRA 59
Score = 80.8 bits (200), Expect = 3e-19
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 494 ARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
A +C + G C +YFD T +C FIYGGC GN N F T QC +C
Sbjct: 2 AEASICSEPKKVGRCKGYFPRFYFDSETGKCTPFIYGGCGGNGNNFETLHQCRAICR 58
Score = 61.1 bits (149), Expect = 2e-12
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
+G + ++Y+D +T C PF YGGC GN N F C+ C
Sbjct: 17 KGYFPRFYFDSETGKCTPFIYGGCGGNGNNFETLHQCRAICRA 59
Score = 29.9 bits (68), Expect = 0.26
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 173 SANDLCFLESESGPCTQQEAAWYFDRNS 200
+ +C + G C +YFD +
Sbjct: 2 AEASICSEPKKVGRCKGYFPRFYFDSET 29
>2ddi_A WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain
containing 1; kunitz domain, protein binding; NMR {Homo
sapiens} PDB: 2ddj_A
Length = 70
Score = 84.3 bits (209), Expect = 2e-20
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
D C+ PAV G C + W Y L +C F YGGC GN NNF + E+C+ C
Sbjct: 7 TDACVLPAVQGPCRGWEPRWAYSPLLQQCHPFVYGGCEGNGNNFHSRESCEDACPV 62
Score = 81.6 bits (202), Expect = 2e-19
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 492 EAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
EA D C L + GPC E W + +C F+YGGCEGN N F++ E CE C
Sbjct: 3 EAEFTDACVLPAVQGPCRGWEPRWAYSPLLQQCHPFVYGGCEGNGNNFHSRESCEDACP 61
Score = 60.1 bits (146), Expect = 7e-12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCV 471
RG +W Y C PF YGGC+GN N F+ + SC+ C
Sbjct: 20 RGWEPRWAYSPLLQQCHPFVYGGCEGNGNNFHSRESCEDACP 61
Score = 29.6 bits (67), Expect = 0.47
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
D C L + GPC E W +
Sbjct: 8 DACVLPAVQGPCRGWEPRWAYSPLL 32
>3aub_A BPTI, bovine pancreatic trypsin inhibitor; serine protease
inhibitor, hydrolase inhibitor; 1.00A {Bos taurus} PDB:
3aui_A 3auh_A 3ci7_A
Length = 58
Score = 83.4 bits (207), Expect = 3e-20
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAG 100
CL+P G ++ ++Y++ + F YGG +NNF + A CA
Sbjct: 2 PAFCLEPPYAGPGKARIIRYFYNAAAGAAQAFVYGGVRAKRNNFASAADALAACAA 57
Score = 81.9 bits (203), Expect = 1e-19
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
R C +GP + ++++ Q+F+YGG N F + C
Sbjct: 1 RPAFCLEPPYAGPGKARIIRYFYNAAAGAAQAFVYGGVRAKRNNFASAADALAACA 56
Score = 60.3 bits (147), Expect = 4e-12
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
+ +++Y+ + Q F YGG + N F C
Sbjct: 15 KARIIRYFYNAAAGAAQAFVYGGVRAKRNNFASAADALAAC 55
Score = 29.5 bits (67), Expect = 0.35
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
C +GP + ++++ +
Sbjct: 3 AFCLEPPYAGPGKARIIRYFYNAAA 27
>1yc0_I Kunitz-type protease inhibitor 1; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens}
Length = 75
Score = 83.9 bits (208), Expect = 3e-20
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 31 YYDSNTSCFPQFIAKDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMT 90
+ + +D CL +G C WYYD E C+ F YGGC GN+NN++
Sbjct: 5 HQHQHQHQHQMHQTEDYCLASNKVGRCRGSFPRWYYDPTEQICKSFVYGGCLGNKNNYLR 64
Query: 91 EEACQARCAG 100
EE C C G
Sbjct: 65 EEECILACRG 74
Score = 80.1 bits (198), Expect = 8e-19
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 481 QTPSTTLAPRQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFN 540
Q Q D C ++ G C WY+D C+SF+YGGC GN N +
Sbjct: 4 QHQHQHQHQHQMHQTEDYCLASNKVGRCRGSFPRWYYDPTEQICKSFVYGGCLGNKNNYL 63
Query: 541 TEEQCERLC 549
EE+C C
Sbjct: 64 REEECILAC 72
Score = 60.5 bits (147), Expect = 6e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
RG++ +WYYD C+ F YGGC GN N + + C C
Sbjct: 32 RGSFPRWYYDPTEQICKSFVYGGCLGNKNNYLREEECILAC 72
Score = 29.3 bits (66), Expect = 0.61
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 174 ANDLCFLESESGPCTQQEAAWYFDRNS 200
D C ++ G C WY+D
Sbjct: 18 TEDYCLASNKVGRCRGSFPRWYYDPTE 44
>4dtg_K Tissue factor pathway inhibitor; antibody, blood coagulation, blood
clotting inhib immune system complex; HET: MES PGE;
1.80A {Homo sapiens} PDB: 1tfx_C
Length = 66
Score = 83.9 bits (208), Expect = 3e-20
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGGT 102
D C G C Y+ ++Y++ +C +F YGGC GN NNF T E C+ C G
Sbjct: 4 PDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDGH 61
Score = 82.7 bits (205), Expect = 7e-20
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGEFR 553
+ D CFLE + G C ++++ T +C+ F YGGC GN N F T E+C+ +C +
Sbjct: 3 KPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDGH 61
Score = 61.6 bits (150), Expect = 2e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
RG +++Y+ T C+ F+YGGC GN N F C+ C
Sbjct: 17 RGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICED 59
Score = 30.0 bits (68), Expect = 0.34
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
D CFLE + G C ++++ +
Sbjct: 5 DFCFLEEDPGICRGYITRYFYNNQT 29
>1bun_B BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A
{Bungarus multicinctus} SCOP: g.8.1.1
Length = 61
Score = 83.5 bits (207), Expect = 4e-20
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGEFR 553
R+ C ++ C A+Y+ + RC F YGGC GN N F ++ C C E+R
Sbjct: 3 RHPDCDKPPDTKICQTVVRAFYYKPSAKRCVQFRYGGCNGNGNHFKSDHLCRCECLEYR 61
Score = 80.0 bits (198), Expect = 6e-19
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCA 99
C +P C V +YY RC QF YGGC GN N+F ++ C+ C
Sbjct: 4 HPDCDKPPDTKICQTVVRAFYYKPSAKRCVQFRYGGCNGNGNHFKSDHLCRCECL 58
Score = 61.2 bits (149), Expect = 2e-12
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
+ +YY C F+YGGC GN N F C+ C++
Sbjct: 17 QTVVRAFYYKPSAKRCVQFRYGGCNGNGNHFKSDHLCRCECLE 59
Score = 28.0 bits (63), Expect = 1.3
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
C ++ C A+Y+ ++
Sbjct: 5 PDCDKPPDTKICQTVVRAFYYKPSA 29
>1y62_A Conkunitzin-S1; alpha helix, beta sheet, 310 helix, kunitz fold,
toxin; 2.45A {Synthetic} PDB: 1yl2_A 2ca7_A 2j6d_A
Length = 60
Score = 83.1 bits (206), Expect = 4e-20
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARC 98
+C PA G YY+S +C +F Y G GGN+NNF CQ C
Sbjct: 4 PSLCDLPADSGSGTKAEKRIYYNSARKQCLRFDYTGQGGNENNFRRTYDCQRTC 57
Score = 80.4 bits (199), Expect = 4e-19
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
R LC L ++SG T+ E Y++ +C F Y G GN N F C+R C
Sbjct: 3 RPSLCDLPADSGSGTKAEKRIYYNSARKQCLRFDYTGQGGNENNFRRTYDCQRTC 57
Score = 60.4 bits (147), Expect = 4e-12
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCV 471
++ YY+ C F Y G GN N F + CQ+ C+
Sbjct: 17 TKAEKRIYYNSARKQCLRFDYTGQGGNENNFRRTYDCQRTCL 58
Score = 29.9 bits (68), Expect = 0.27
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
LC L ++SG T+ E Y++
Sbjct: 5 SLCDLPADSGSGTKAEKRIYYNSAR 29
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 87.5 bits (217), Expect = 5e-20
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 336 IPSPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
+P P + TV+A T C YP P +W++ ++ I D Y + +G
Sbjct: 4 LPKAPVIT--TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+L I+ + D GIY C A NG+G + + V
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
Score = 80.9 bits (200), Expect = 8e-18
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG 386
+ + P+ P V+ EG L C +G P P +W KG+ ++ +
Sbjct: 89 VESCGALQVKMKPKI--TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-ENS 145
Query: 387 HYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ G L+I + ++DAG Y CVA N +G K + V
Sbjct: 146 RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 47.4 bits (113), Expect = 3e-06
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C A G V S + V P+ P V+ EG L C +G P
Sbjct: 79 CTANNGVGGAVESCG-------ALQVKMKPKI--TRPPINVKIIEGLKAVLPCTTMGNPK 129
Query: 153 PVYTWSKGE 161
P +W KG+
Sbjct: 130 PSVSWIKGD 138
Score = 43.6 bits (103), Expect = 5e-05
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 119 VASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ P + TV+A T C YP P +W++
Sbjct: 4 LPKAPVIT--TPLETVDALVEEVATFMCAVESYPQPEISWTR 43
>3aug_A BPTI, bovine pancreatic trypsin inhibitor; serine protease
inhibitor, inhibits serine protease, trypsin hydrolase
inhibitor; 1.40A {Bos taurus} PDB: 3aue_A 3auc_A 3aud_A
1f7z_I 1f5r_I 3tgi_I 3tgj_I 3tgk_I
Length = 65
Score = 83.1 bits (206), Expect = 5e-20
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGGT 102
CL+P G ++ ++Y++ + F YGG +NNF + A CA
Sbjct: 2 PAFCLEPPYAGPGKARIIRYFYNAAAGAAQAFVYGGVRAKRNNFASAADALAACAAAG 59
Score = 82.0 bits (203), Expect = 1e-19
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGEFRA 554
R C +GP + ++++ Q+F+YGG N F + C
Sbjct: 1 RPAFCLEPPYAGPGKARIIRYFYNAAAGAAQAFVYGGVRAKRNNFASAADALAACAAAGG 60
Query: 555 EDP 557
P
Sbjct: 61 PPP 63
Score = 65.0 bits (159), Expect = 1e-13
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPPPDP 479
+ +++Y+ + Q F YGG + N F C PP P
Sbjct: 15 KARIIRYFYNAAAGAAQAFVYGGVRAKRNNFASAADALAACAAAGGPPPP 64
Score = 28.8 bits (65), Expect = 0.63
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
C +GP + ++++ +
Sbjct: 3 AFCLEPPYAGPGKARIIRYFYNAAA 27
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 84.4 bits (209), Expect = 7e-20
Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 333 TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL 392
+ PP L C+A G P+P W K V + D K
Sbjct: 2 SSGSSGPPVIRQGPV-NQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE 60
Query: 393 DGVLQIVGLVRQDAGIYVCVAANGIG 418
+GVLQI D G Y C+A+ G
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIASTPSG 86
Score = 40.1 bits (94), Expect = 2e-04
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ PP L C+A G P+P W K
Sbjct: 6 SGPPVIRQGPV-NQTVAVDGTFVLSCVATGSPVPTILWRK 44
>1adz_A TFPI, EPI, LACI, tissue factor pathway inhibitor; hydrolase,
coagulation; NMR {Homo sapiens} SCOP: g.8.1.1
Length = 71
Score = 82.8 bits (205), Expect = 7e-20
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101
D C G C Y+ ++Y++ +C +F YGGC GN NNF T E C+ C G
Sbjct: 11 PDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDG 67
Score = 82.0 bits (203), Expect = 1e-19
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 491 QEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
+ + D CFLE + G C ++++ T +C+ F YGGC GN N F T E+C+ +C
Sbjct: 6 DDKLKPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICE 65
Query: 551 E 551
+
Sbjct: 66 D 66
Score = 60.4 bits (147), Expect = 5e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
RG +++Y+ T C+ F+YGGC GN N F C+ C
Sbjct: 24 RGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICED 66
Score = 29.6 bits (67), Expect = 0.50
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 175 NDLCFLESESGPCTQQEAAWYFDRNS 200
D CFLE + G C ++++ +
Sbjct: 11 PDFCFLEEDPGICRGYITRYFYNNQT 36
>1jc6_A Venom basic protease inhibitors IX and VIIIB; snake venom, kunitz
inhibitor, neurotoxin, solution structure, BF IX,
chymotrypsin inhibitor; NMR {Bungarus fasciatus} SCOP:
g.8.1.1
Length = 65
Score = 82.4 bits (204), Expect = 8e-20
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101
C G C + +YY+S +C++F YGGCGGN NNF T + CQ CA
Sbjct: 5 TFCNLLPETGRCNALIPAFYYNSHLHKCQKFNYGGCGGNANNFKTIDECQRTCAAK 60
Score = 82.0 bits (203), Expect = 1e-19
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 495 RNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCG 550
R C L E+G C A+Y++ + ++CQ F YGGC GNAN F T ++C+R C
Sbjct: 3 RPTFCNLLPETGRCNALIPAFYYNSHLHKCQKFNYGGCGGNANNFKTIDECQRTCA 58
Score = 60.4 bits (147), Expect = 5e-12
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPP 476
+YY+ CQ F YGGC GN N F CQ+ C
Sbjct: 17 NALIPAFYYNSHLHKCQKFNYGGCGGNANNFKTIDECQRTCAAKYGR 63
Score = 30.0 bits (68), Expect = 0.33
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
C L E+G C A+Y++ +
Sbjct: 5 TFCNLLPETGRCNALIPAFYYNSHL 29
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 86.5 bits (214), Expect = 1e-19
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 11/135 (8%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D G YSC S+ T +V + P P P V A G
Sbjct: 75 ASDKGNYSCFVSSPS----ITKSVFSKFIPLIPIPERTTKPYPADI-VVQFKDVYALMGQ 129
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
VTL C A+G P+P W K + T VL+I + +D GIY C A N
Sbjct: 130 NVTLECFALGNPVPDIRWRKVLEPM--PSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 417 IGDPIRKEFNVIVRG 431
G + + + V+
Sbjct: 188 RGK-DKHQARIYVQA 201
Score = 61.1 bits (148), Expect = 6e-11
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIP--VYTWSKGE--VSIDGSDGHYKLTLDGVLQIVGLVR 403
P V +EG + L C + Y W E V I + +G L I +
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEA 75
Query: 404 QDAGIYVCVAANGIGDPIRKEFNVIVR 430
D G Y C ++ + +
Sbjct: 76 SDKGNYSCFVSSPSITKSVFSKFIPLI 102
Score = 44.1 bits (104), Expect = 4e-05
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQL---ENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGY 150
C T + + L R P V A G VTL C A+G
Sbjct: 83 CFVSSPSIT-KSVFSKFIPLIPIPERTTKPYPADI-VVQFKDVYALMGQNVTLECFALGN 140
Query: 151 PIPVYTWSK 159
P+P W K
Sbjct: 141 PVPDIRWRK 149
Score = 29.5 bits (66), Expect = 2.7
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 131 PTVEAEEGNFVTLRCIAIGYPIP--VYTWSKGEV 162
P V +EG + L C + Y W E
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEF 49
>2kcr_A Anntoxin; protein; NMR {Hyla annectans}
Length = 61
Score = 82.0 bits (203), Expect = 1e-19
Identities = 19/57 (33%), Positives = 24/57 (42%)
Query: 45 KDICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101
C G + +YYD + C+ F Y G GGN N F T E C+A C
Sbjct: 4 DYRCQLSRNYGKGSGSFTNYYYDKATSSCKTFRYRGSGGNGNRFKTLEDCEATCVTA 60
Score = 80.1 bits (198), Expect = 5e-19
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 494 ARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLC 549
A++ C L G + +Y+D+ T C++F Y G GN NRF T E CE C
Sbjct: 2 AQDYRCQLSRNYGKGSGSFTNYYYDKATSSCKTFRYRGSGGNGNRFKTLEDCEATC 57
Score = 60.4 bits (147), Expect = 5e-12
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCV 471
G++ +YYD+ T SC+ F+Y G GN NRF C+ CV
Sbjct: 17 SGSFTNYYYDKATSSCKTFRYRGSGGNGNRFKTLEDCEATCV 58
Score = 30.4 bits (69), Expect = 0.22
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 173 SANDLCFLESESGPCTQQEAAWYFDRNS 200
+ + C L G + +Y+D+ +
Sbjct: 2 AQDYRCQLSRNYGKGSGSFTNYYYDKAT 29
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 82.8 bits (205), Expect = 1e-19
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 333 TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL 392
+ PP L+C A G P+PV +W K + G D +
Sbjct: 2 SSGSSGPPIILQGPA-NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE 60
Query: 393 DGVLQIVGLVRQDAGIYVCVAANGIG 418
G LQI L D G Y CVA + G
Sbjct: 61 QGTLQIKNLRISDTGTYTCVATSSSG 86
Score = 40.5 bits (95), Expect = 1e-04
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 118 AVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ PP L+C A G P+PV +W K
Sbjct: 4 GSSGPPIILQGPA-NQTLAVDGTALLKCKATGDPLPVISWLK 44
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 83.7 bits (207), Expect = 8e-19
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD--- 393
+ + P + +G V L C G P W K + D Y +
Sbjct: 1 AGLKL--MGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 394 -GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G L + + R DAG Y C +G I + + V G
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 66.7 bits (163), Expect = 5e-13
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDGHYKLTLDGV 395
P F EP + L C A+G P PV W +G I G V
Sbjct: 97 GVPFFT--VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-----PSV 149
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L + G+ + ++ C A N G + V ++
Sbjct: 150 LNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 45.6 bits (108), Expect = 9e-06
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
CQ G T ++ + V P F EP + L C A+G P
Sbjct: 77 CQVEDGGETEISQPV-------WLTVEGVPFFT--VEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 153 PV-YTWSKG 160
PV W +G
Sbjct: 128 PVTIVWWRG 136
Score = 42.9 bits (101), Expect = 9e-05
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 121 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ + P + +G V L C G P W K
Sbjct: 1 AGLKL--MGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK 38
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 83.7 bits (207), Expect = 2e-18
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
P D Y C SN + +T ++ V P + V E
Sbjct: 73 PRDEAIYECVASNNVGEISVSTRLT----VLREDQIPR---GFPTIDMGPQLKV-VERTR 124
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL-----DGVLQIVGLVRQDAGIYVC 411
T+ C A G P P TW K + +D S+ + ++ G LQI D G Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 412 VAANGIGDPIRKEFNVIVRG 431
VA N G N+ VRG
Sbjct: 185 VATNSAGTRYSAPANLYVRG 204
Score = 69.8 bits (171), Expect = 9e-14
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
+PPRF P G + C A G P P W+K + DG
Sbjct: 5 TPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 395 -VLQIVGL-VRQDAGIYVCVAANGIG 418
VL+I L +D IY CVA+N +G
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVG 88
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A G ++ S L P + V E T+ C A G P P
Sbjct: 81 CVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKV-VERTRTATMLCAASGNPDP 138
Query: 154 VYTWSKGEV 162
TW K +
Sbjct: 139 EITWFKDFL 147
Score = 41.3 bits (97), Expect = 4e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+PPRF P G + C A G P P W+K
Sbjct: 3 GETPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNK 42
>2jot_A Huwentoxin-11; proteinase inhibitor; NMR {Ornithoctonus huwena}
Length = 55
Score = 78.4 bits (194), Expect = 2e-18
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 46 DICLQPAVIGDCANYVLTWYYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGG 101
D C P+ G C WY++ C +F YGGCGGN N F T+EAC RCA
Sbjct: 2 DTCRLPSDRGRCKASFERWYFNG--RTCAKFIYGGCGGNGNKFPTQEACMKRCAKA 55
Score = 75.7 bits (187), Expect = 2e-17
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 497 DLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEEQCERLCGE 551
D C L S+ G C WYF+ T C FIYGGC GN N+F T+E C + C +
Sbjct: 2 DTCRLPSDRGRCKASFERWYFNGRT--CAKFIYGGCGGNGNKFPTQEACMKRCAK 54
Score = 55.3 bits (134), Expect = 3e-10
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 430 RGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRCVQ 472
+ ++E+WY++ +C F YGGC GN N+F Q +C KRC +
Sbjct: 14 KASFERWYFN--GRTCAKFIYGGCGGNGNKFPTQEACMKRCAK 54
Score = 29.1 bits (66), Expect = 0.42
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 176 DLCFLESESGPCTQQEAAWYFDRNS 200
D C L S+ G C WYF+ +
Sbjct: 2 DTCRLPSDRGRCKASFERWYFNGRT 26
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 81.4 bits (201), Expect = 8e-18
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 338 SPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL-DGV 395
PP +P G + C A G P P W K + G+ Y + G
Sbjct: 5 HPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 396 LQIVGL----VRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ I+ + +D Y CVA NG+GD + + + +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 100
Score = 81.0 bits (200), Expect = 1e-17
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 330 TPYTPNIPSPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHY 388
P P T E G+ V + C AIG P P W K + +D S+ Y
Sbjct: 101 YEGDKTPAGFPVIT--QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY 158
Query: 389 KLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L DG LQI +D G Y CVA N +G K N+ V+
Sbjct: 159 SLK-DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Score = 45.9 bits (109), Expect = 9e-06
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPI 152
C A G V++ A E A P P T E G+ V + C AIG P
Sbjct: 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVIT--QGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 153 PVYTWSKGEV 162
P W K +
Sbjct: 140 PNIYWIKNQT 149
Score = 45.9 bits (109), Expect = 1e-05
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 119 VASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
A PP +P G + C A G P P W K
Sbjct: 3 GAHPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRK 42
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 84.6 bits (209), Expect = 1e-17
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 11/138 (7%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D Y C N V Y + T P S+ + A+ G+
Sbjct: 173 VSDIYKYVCTAKNAA---VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-AKAGD 228
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSD----GHYKLTLDGVLQIVGLVRQDAGIYVCV 412
+ C+ P+ + K ++G+ + T L + +D G+Y C
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 413 AANGIGDPIRKEFNVIVR 430
NG+G P + + V
Sbjct: 289 VDNGVGKPQKHSLKLTVV 306
Score = 76.9 bits (189), Expect = 3e-15
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
+ S P++ E + ++G VT+ C G P P WS + S G +T D
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVT-DS 360
Query: 395 VLQIVGLVRQDAGIYVCVAANGIG 418
L I G+ D G Y C A N G
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHG 384
Score = 71.5 bits (175), Expect = 2e-13
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 336 IPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDGHYKLTL- 392
+ P +P V E N L CI G V Y+W K S + + + L
Sbjct: 3 VDKYPVLK--DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 393 DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+G L + D G Y C A G + +
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 97
Score = 67.2 bits (164), Expect = 4e-12
Identities = 28/145 (19%), Positives = 41/145 (28%), Gaps = 29/145 (20%)
Query: 300 PNDCG-YSC--SNLF-DITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEG 355
+D G Y C ++ + Y P+ EG
Sbjct: 71 ASDEGHYQCFAETPAGVASSRVISFRKTYL--------IASPAKTH-------EKTPIEG 115
Query: 356 NFVTLRC-IAIGYPIPVYTWSKGEVSIDGS------DGHYKLTLDGVLQIVGLVRQDA-- 406
L C + YP P+ TW K D + D DG L + ++D
Sbjct: 116 RPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 407 -GIYVCVAANGIGDPIRKEFNVIVR 430
YVC A N D ++
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIK 200
Score = 47.6 bits (113), Expect = 7e-06
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+ G S ++ V S P++ E + ++G VT+ C G P P
Sbjct: 287 CEVDNGVGKPQKHSL-------KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP 339
Query: 154 VYTWSK 159
WS
Sbjct: 340 NVVWSH 345
Score = 44.1 bits (104), Expect = 1e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 94 CQAR-CAGGTFVTSSAAPDQL--ENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGY 150
C A+ A V + ++ P S+ + A+ G+ + C+
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYCMYGSN 239
Query: 151 PIPVYTWSK 159
P+ + K
Sbjct: 240 PMGYPNYFK 248
Score = 40.3 bits (94), Expect = 0.002
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPV-YTWSK 159
V P +P V E N L CI G V Y+W K
Sbjct: 3 VDKYPVLK--DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK 43
Score = 40.3 bits (94), Expect = 0.002
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 9/71 (12%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRC-IAIGYPI 152
C A G + + EG L C + YP
Sbjct: 79 CFAETPAGVASSRVI-------SFRKTYLIASPAKTHE-KTPIEGRPFQLDCVLPNAYPK 130
Query: 153 PVYTWSKGEVS 163
P+ TW K
Sbjct: 131 PLITWKKRLSG 141
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 79.9 bits (197), Expect = 2e-17
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 338 SPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
S P + AE G +T C A G P P +W + I+ ++ + + L
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 397 QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ ++ D G YVC A N G+ K+ + V
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGE-DEKQAFLQV 92
Score = 68.3 bits (167), Expect = 2e-13
Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKL-------- 390
P E VTL C A G PIP TW + ++G L
Sbjct: 95 QPHI--IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 152
Query: 391 -TLDGVLQIVGLVRQDAGIYVCVAANGIG 418
L I + D+G Y C AA+ IG
Sbjct: 153 QHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 44.0 bits (104), Expect = 4e-05
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 116 RIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ V P E VTL C A G PIP TW +
Sbjct: 89 FLQVFVQPHI--IQLKNETTYENGQVTLVCDAEGEPIPEITWKRA 131
Score = 43.3 bits (102), Expect = 6e-05
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 121 SPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
S P + AE G +T C A G P P +W +
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 40
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 79.5 bits (196), Expect = 2e-17
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLD 393
I F N P E +EG + C + P W G I D + + +
Sbjct: 96 KIFQKLMFKNAPTPQ-EFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIG-DPIRKEFNVIV 429
LQI G+ + D G Y C + K+ VIV
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 69.1 bits (169), Expect = 1e-13
Identities = 18/98 (18%), Positives = 25/98 (25%), Gaps = 9/98 (9%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYP-IPVYTWSK-GEVSIDGSDGHYKLTL--- 392
+ P+ E G C G +W + + +
Sbjct: 2 VLQVD--IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 393 -DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L I DAGIY CV G NV +
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 46.0 bits (109), Expect = 9e-06
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C GT ++ + + F N P E +EG + C + P
Sbjct: 79 CVVTAEDGTQSEATV-------NVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDVVSSLPP 130
Query: 154 VYTWSK 159
W
Sbjct: 131 TIIWKH 136
Score = 34.0 bits (78), Expect = 0.066
Identities = 6/40 (15%), Positives = 9/40 (22%), Gaps = 4/40 (10%)
Query: 122 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYP-IPVYTWSK 159
+ P+ E G C G +W
Sbjct: 2 VLQVD--IVPSQGEISVGESKFFLCQVAGDAKDKDISWFS 39
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 83.0 bits (205), Expect = 3e-17
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS--D 385
S + P RF + +E + A G+ V L+C IG P+P W K + ++ D
Sbjct: 110 ISRTAKVMVAGPLRFLSQTES-ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD 168
Query: 386 GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ G LQI L D+G+Y C A N E V +
Sbjct: 169 SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Score = 79.5 bits (196), Expect = 4e-16
Identities = 31/120 (25%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
P D G Y C + P + F V A EG
Sbjct: 186 PGDSGVYRC-----SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS-NVIAIEGKDA 239
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
L C GYP P +TW +GE I Y L L I + D+G Y CV
Sbjct: 240 VLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE 299
Score = 74.9 bits (184), Expect = 2e-14
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
PP F N P+ + A E + C G P+P W K + ++++ L
Sbjct: 311 VPPWFLN--HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-PSDYFQIVGGSNL 367
Query: 397 QIVGLVRQDAGIYVCVAANGIG 418
+I+G+V+ D G Y CVA N G
Sbjct: 368 RILGVVKSDEGFYQCVAENEAG 389
Score = 64.9 bits (158), Expect = 2e-11
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 328 TSTPYTPNIPSPPRFHNYSEP-TVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVSID-GS 384
+ + F SEP G V L C A +PV W K + + G
Sbjct: 10 SHHHHHHGGRRSLHFV--SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGM 67
Query: 385 DGHYKLTLDGVLQIVGLV-----RQDAGIYVCVAANGI-GDPIRKEFNVIVRG 431
D + +G L I ++ + D G+Y C A+ G G I + V+V G
Sbjct: 68 DDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
Score = 50.2 bits (120), Expect = 1e-06
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A + S A ++ VA P RF + +E + A G+ V L+C IG P+P
Sbjct: 99 CEASLGDSGSIISRTA------KVMVAGPLRFLSQTES-ITAFMGDTVLLKCEVIGDPMP 151
Query: 154 VYTWSKGEV 162
W K +
Sbjct: 152 TIHWQKNQQ 160
Score = 42.1 bits (99), Expect = 4e-04
Identities = 14/57 (24%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 105 TSSAAPDQLENRIAVASPPRFHNYSEP-TVEAEEGNFVTLRCIAIG-YPIPVYTWSK 159
S + F SEP G V L C A +PV W K
Sbjct: 4 GSELESSHHHHHHGGRRSLHFV--SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Score = 41.4 bits (97), Expect = 7e-04
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C AR T T + A ++ + + F V A EG L C GYP P
Sbjct: 194 CSARNPAST-RTGNEAEVRILSDPGLHRQLYFLQRPS-NVIAIEGKDAVLECCVSGYPPP 251
Query: 154 VYTWSKGEVSRKFFLRGFISAND 176
+TW +GE + + +
Sbjct: 252 SFTWLRGEEVIQLRSKKYSLLGG 274
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C +++SA + V PP F N P+ + A E + C G P+
Sbjct: 292 CVVTYKNEN-ISASA-------ELTVLVPPWFLN--HPSNLYAYESMDIEFECAVSGKPV 341
Query: 153 PVYTWSK 159
P W K
Sbjct: 342 PTVNWMK 348
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 81.5 bits (201), Expect = 3e-17
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 336 IPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDG 394
I F N P E +EG + C + P W G I D + + +
Sbjct: 97 IFQKLMFKNAPTP-QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155
Query: 395 VLQIVGLVRQDAGIYVCVAANGIG-DPIRKEFNVIVR 430
LQI G+ + D G Y C + K+ VIV
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Score = 72.6 bits (178), Expect = 4e-14
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD----GHYKLTLD 393
PP A G VTL C A G+P P +W+K I+ + H
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRK-EFNVIVR 430
L I + + D YVC+A N G+ V +
Sbjct: 254 SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 62.2 bits (151), Expect = 9e-11
Identities = 18/97 (18%), Positives = 25/97 (25%), Gaps = 9/97 (9%)
Query: 340 PRFHNYSEP-TVEAEEGNFVTLRCIAIGYP-IPVYTWSK-GEVSIDGSDGHYKLTLD--- 393
+ P E G C G +W + + + +
Sbjct: 3 LQVD--IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 394 -GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L I DAGIY CV G NV +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 46.0 bits (109), Expect = 1e-05
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C GT ++ + + F N P E +EG + C + P
Sbjct: 79 CVVTAEDGTQSEATV-------NVKIFQKLMFKNAPTP-QEFKEGEDAVIVCDVVSSLPP 130
Query: 154 VYTWSK 159
W
Sbjct: 131 TIIWKH 136
Score = 43.7 bits (103), Expect = 8e-05
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C+ R + ++ V PP A G VTL C A G+P
Sbjct: 172 CEGRILARGEINFKDI------QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPE 225
Query: 153 PVYTWSK 159
P +W+K
Sbjct: 226 PTMSWTK 232
Score = 31.0 bits (70), Expect = 0.91
Identities = 6/39 (15%), Positives = 8/39 (20%), Gaps = 4/39 (10%)
Query: 123 PRFHNYSEP-TVEAEEGNFVTLRCIAIGYP-IPVYTWSK 159
+ P E G C G +W
Sbjct: 3 LQVD--IVPSQGEISVGESKFFLCQVAGDAKDKDISWFS 39
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 82.2 bits (203), Expect = 6e-17
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 11/134 (8%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D G YSC ++ D T + + S P A G
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQ---LSLAAEDARQYAPSIKAKFPADTYALTGQ 223
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
VTL C A G P+P W K +DGS L+ + +L I + +D G Y C A N
Sbjct: 224 MVTLECFAFGNPVPQIKWRK----LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENI 279
Query: 417 IGDPIRKEFNVIVR 430
G + +I+
Sbjct: 280 KGR-DTYQGRIIIH 292
Score = 72.6 bits (178), Expect = 7e-14
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 335 NIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD 393
I + P + T EA+ G+ + C+A G P P W + + S +++
Sbjct: 290 IIHAQPDWL--DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS-G 345
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G L+ LV +D+G+Y CVA N G + + V+
Sbjct: 346 GELRFSKLVLEDSGMYQCVAENKHGT-VYASAELTVQA 382
Score = 71.4 bits (175), Expect = 2e-13
Identities = 23/101 (22%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGE--VSIDGS 384
S + F V+ EG V C YP Y W E I
Sbjct: 89 VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD 148
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEF 425
+ G L I D G Y C A + I + F
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVF 189
Score = 67.6 bits (165), Expect = 3e-12
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 339 PPRFHNYSEPT----VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
P F +P E VTL C A P Y W + + G
Sbjct: 4 GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 395 VLQIVGLVR-QDAGIYVCVAANGIGDPIRKEFNVIV 429
L I V+ +DAG Y CVA N G + +E ++
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97
Score = 47.9 bits (114), Expect = 5e-06
Identities = 21/82 (25%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 94 CQARCAGGTF---VTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGY 150
C A V S + L A P A G VTL C A G
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234
Query: 151 PIPVYTWSK--GEVSRKFFLRG 170
P+P W K G + K+
Sbjct: 235 PVPQIKWRKLDGSQTSKWLSSE 256
Score = 44.5 bits (105), Expect = 7e-05
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPI 152
C A A GT V+ A + F V+ EG V C YP
Sbjct: 79 CVATNARGTVVSREA-------SLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA 131
Query: 153 PVYTWSKGEV 162
Y W E
Sbjct: 132 LSYRWLLNEF 141
Score = 41.4 bits (97), Expect = 6e-04
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C+A G T RI + + P + T EA+ G+ + C+A G P
Sbjct: 274 CEAENIKGR-DTYQG-------RIIIHAQPDWL--DVITDTEADIGSDLRWSCVASGKPR 323
Query: 153 PVYTWSK 159
P W +
Sbjct: 324 PAVRWLR 330
Score = 39.5 bits (92), Expect = 0.003
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 120 ASPPRFHNYSEPT----VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ P F +P E VTL C A P Y W
Sbjct: 2 SYGPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM 43
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 78.3 bits (193), Expect = 7e-17
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
PP + AE G +T C A G P P +W + I+ ++ + + L
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 155
Query: 398 IVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ ++ D G YVC A N G+ K+ + V
Sbjct: 156 VRNIINSDGGPYVCRATNKAGE-DEKQAFLQV 186
Score = 76.0 bits (187), Expect = 4e-16
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVL 396
S F P E ++G + C P P +W E SD + + + L
Sbjct: 1 SMLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 397 QIVGLVRQDAGIYVCVAAN-GIGDPIRKEFNVIVR 430
QI+ + + D GIY C G+ ++ VIV
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 94
Score = 45.9 bits (109), Expect = 7e-06
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C+ R + + V PP + AE G +T C A G P
Sbjct: 74 CEGRVEARGEIDFRDI------IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 153 PVYTWSKG 160
P +W +
Sbjct: 128 PAISWFRN 135
Score = 40.9 bits (96), Expect = 3e-04
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
S F P E ++G + C P P +W
Sbjct: 1 SMLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLY 38
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 78.7 bits (194), Expect = 7e-17
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
F + G + C G+P P +W K +D D + G L
Sbjct: 110 LRDDFRQNPSDVM-VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-GGKL 167
Query: 397 QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
I + DAG YVCV N +G+ + + V
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
Score = 68.7 bits (168), Expect = 2e-13
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI----DGSDGHYKLTL 392
PPR P+ + +G TL C A G P P W KG + D H L
Sbjct: 8 FPPRI--VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 393 DGVLQIVGLV-----RQDAGIYVCVAANGIGDPIRKEFNVIV 429
G L + +V R D G+YVCVA N +G+ + + ++ V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG------EVSRKFFLRGF 171
PPR P+ + +G TL C A G P P W KG + R
Sbjct: 6 EDFPPRI--VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 172 ISANDLCFLESESGPCTQQEAAWY 195
+ + L FL G ++ + Y
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVY 87
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVAS-PPRFHNYSEPTVEAEEGNFVTLRCIAI-GYP 151
C AR G V+ A + VA F + G + C G+P
Sbjct: 89 CVARNYLGEAVSHDA-------SLEVAILRDDFRQNPSDVM-VAVGEPAVMECQPPRGHP 140
Query: 152 IPVYTWSKGEV 162
P +W K
Sbjct: 141 EPTISWKKDGS 151
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 78.8 bits (194), Expect = 7e-17
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 336 IPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV 395
+P + + + G FV L C A G+P Y W K I +
Sbjct: 15 VPRGSKI-TVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-------SE 66
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L + +DAG YVC N + + V
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
Score = 75.7 bits (186), Expect = 9e-16
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 300 PNDCG-YSC--SNLF-DITTTTTTVS-PAYPVYTSTPYTPNIPSPPRFHNYSEPT-VEAE 353
D G Y C +N F + + + P S + EPT +
Sbjct: 74 VKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQI--CVEPTSQKLM 131
Query: 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVA 413
G+ + L+C+A+G PIP Y W K E+ + + + + + G Y C
Sbjct: 132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-------LYMVPYVDLEHQGTYWCHV 184
Query: 414 ANGIGDPIRKEFNVIVR 430
N K+ +I+
Sbjct: 185 YNDRDSQDSKKVEIIID 201
Score = 46.8 bits (111), Expect = 6e-06
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 94 CQARCAGGTFVTSSA------APDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCI 146
C+ + + P+ + + S + EPT + G+ + L+C+
Sbjct: 82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV 141
Query: 147 AIGYPIPVYTWSKGEV 162
A+G PIP Y W K E+
Sbjct: 142 AVGSPIPHYQWFKNEL 157
Score = 45.3 bits (107), Expect = 2e-05
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 106 SSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
S+ + V + + + G FV L C A G+P Y W K
Sbjct: 2 GSSHHHHHHSSGLVPRGSKI-TVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK 54
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 80.6 bits (199), Expect = 2e-16
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
+D G Y+C +T P + + P+ TV AE+G V
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE--YEPKIEVQFPETVPAEKGTTV 223
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDG---SDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415
L C A+G P+P W + DG + + +G+L+I ++DAG Y CVA N
Sbjct: 224 KLECFALGNPVPTILWRRA----DGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAEN 279
Query: 416 GIGDPIRKEFNVIV 429
G + +
Sbjct: 280 SRGK-NVAKGQLTF 292
Score = 76.8 bits (189), Expect = 3e-15
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 329 STPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGH 387
S F + TV G + L C Y W E +
Sbjct: 91 SREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR 150
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIR 422
+ G L I + + D G Y CV N + +
Sbjct: 151 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV 185
Score = 72.2 bits (177), Expect = 1e-13
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 338 SPPRFHNYSEPTV--EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV 395
S P F + E V L C G P P W +D +DG
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 396 LQIVGLVR-QDAGIYVCVAANGIGDPIRKEFNVIV 429
L I + QDAG Y C+A N G + +E +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 98
Score = 70.2 bits (172), Expect = 4e-13
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
+ P + V C A G P P Y W K + + ++ G L
Sbjct: 294 AQPNWVQIINDIH-VAMEESVFWECKANGRPKPTYRWLKNGDPLL-TRDRIQIE-QGTLN 350
Query: 398 IVGLVRQDAGIYVCVAANGIGD 419
I + DAG+Y CVA N G
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGV 372
Score = 48.7 bits (116), Expect = 3e-06
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 94 CQAR-CAGGTFVTSSAAPDQL-ENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYP 151
C V P L + + P+ TV AE+G V L C A+G P
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233
Query: 152 IPVYTWSK 159
+P W +
Sbjct: 234 VPTILWRR 241
Score = 46.0 bits (109), Expect = 2e-05
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPI 152
C A + GT V+ A ++ A F + TV G + L C
Sbjct: 80 CIATNSFGTIVSREA-------KLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE 132
Query: 153 PVYTWSKGEV 162
Y W E
Sbjct: 133 LSYAWIFNEY 142
Score = 41.7 bits (98), Expect = 5e-04
Identities = 11/42 (26%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 120 ASPPRFHNYSEPTV--EAEEGNFVTLRCIAIGYPIPVYTWSK 159
S P F + E V L C G P P W
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL 44
Score = 40.2 bits (94), Expect = 0.002
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A + G + ++ + P + V C A G P P
Sbjct: 275 CVAENSRGK-NVAKG-------QLTFYAQPNWVQIINDIH-VAMEESVFWECKANGRPKP 325
Query: 154 VYTWSK 159
Y W K
Sbjct: 326 TYRWLK 331
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 77.6 bits (191), Expect = 2e-16
Identities = 33/144 (22%), Positives = 46/144 (31%), Gaps = 17/144 (11%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVS-------PAYPVYTSTPYTPNIPSPPRFHNYSEPT 349
PND G Y + T +S A +
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV- 126
Query: 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD----GVLQIVGLVRQD 405
V +EG + L C G P P +W K E ++ +D H L + I G+ D
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD-HCNLKFEAGRTAYFTINGVSTAD 185
Query: 406 AGIYVCVAANGIGDPIRKEFNVIV 429
+G Y V N G +F V V
Sbjct: 186 SGKYGLVVKNKYGS-ETSDFTVSV 208
Score = 52.2 bits (125), Expect = 8e-08
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 346 SEPTVEAEEGNFVTLRC-IAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGL 401
+ + L + WS +I SD K + G LQI
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEP 66
Query: 402 VRQDAGIYVCVAANGIG 418
D G YV +G
Sbjct: 67 TPNDKGKYVMELFDGKT 83
Score = 42.2 bits (99), Expect = 2e-04
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 87 NFMTEEACQARCAGGTFVTSSAAPDQLENR-IAVASPPRFHNYSEPTVEAEEGNFVTLRC 145
+ T +G + + A +L+ IA + R V +EG + L C
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC 139
Query: 146 IAIGYPIPVYTWSKGEV 162
G P P +W K E
Sbjct: 140 NVWGDPPPEVSWLKNEK 156
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 74.7 bits (184), Expect = 2e-16
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 325 PVYTSTPYTP-NIPSPPRFH--NYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI 381
+ P T I PP+ + T + G + L G P P W+KG +
Sbjct: 6 SGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65
Query: 382 DGSDGHYKLT-LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
D S H + + D V + R D+G Y + V
Sbjct: 66 DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRV 113
Score = 42.0 bits (99), Expect = 5e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 119 VASPPRFH--NYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+A PP+ + T + G + L G P P W+KG
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 74.1 bits (182), Expect = 2e-16
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 333 TPNIPS-PPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKL 390
PS P + + G VT C A P W++ S
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF- 60
Query: 391 TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+G+L I + DAG YVC +N + + V+
Sbjct: 61 --NGILTIRNVQPSDAGTYVCTGSNMFA-MDQGTATLHVQ 97
Score = 40.9 bits (96), Expect = 7e-05
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 118 AVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGE 161
A + P + + G VT C A P W++
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH 49
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 79.1 bits (195), Expect = 3e-16
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 13/136 (9%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
P D Y C N T ++ V P + V E
Sbjct: 73 PRDENVYECVAQNSVGEITVHAKLT----VLREDQL---PSGFPNIDMGPQLKV-VERTR 124
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGS--DGHYKLTLDGVLQIVGLVRQDAGIYVCVAA 414
T+ C A G P P TW K + +D S +G K G LQI D G Y CVA
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 415 NGIGDPIRKEFNVIVR 430
N G N+ VR
Sbjct: 185 NSAGVRYSSPANLYVR 200
Score = 69.1 bits (169), Expect = 5e-13
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 338 SPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD--- 393
PPRF EP G + C A G P P TW+K ++ +
Sbjct: 5 EPPRF--IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 394 GVLQIVGL-VRQDAGIYVCVAANGIG 418
VL+I L +D +Y CVA N +G
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVG 88
Score = 62.5 bits (152), Expect = 7e-11
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
PRF + E G V + C+A+G P+P W +G + D G
Sbjct: 203 NVAPRFSILPM-SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM----PVGRN 257
Query: 397 QIVGLVRQDAGIYVCVAANGIG 418
+ +D+ Y CVA + +G
Sbjct: 258 VLELTDVKDSANYTCVAMSSLG 279
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 119 VASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
PPRF EP G + C A G P P TW+K
Sbjct: 3 GEEPPRF--IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNK 42
Score = 41.7 bits (98), Expect = 4e-04
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A + G +S A L R+ PRF + E G V + C+A+G P+P
Sbjct: 181 CVATNSAGVRYSSPA---NLYVRV-QNVAPRFSILPM-SHEIMPGGNVNITCVAVGSPMP 235
Query: 154 VYTWSKG 160
W +G
Sbjct: 236 YVKWMQG 242
Score = 40.2 bits (94), Expect = 0.001
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A+ + G +T A L + P + V E T+ C A G P P
Sbjct: 81 CVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKV-VERTRTATMLCAASGNPDP 138
Query: 154 VYTWSKG 160
TW K
Sbjct: 139 EITWFKD 145
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 76.4 bits (188), Expect = 3e-16
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
+ + S VE G C AIG P + ++ I S + +G
Sbjct: 1 ALLQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKII-STQRVVVQKEGVRS 58
Query: 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L I +DAGIY C A + G + +
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 93
Score = 75.6 bits (186), Expect = 5e-16
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSID-GSDGHYKLTLD 393
I F P E ++G + C P P +W + SD + + +
Sbjct: 92 EIYQKLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 150
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIR-KEFNVIV 429
LQI+ + + D GIY C I ++ VIV
Sbjct: 151 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 44.4 bits (105), Expect = 3e-05
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
CQA A G ++ + + F P E ++G + C P P
Sbjct: 75 CQATDAKGQTQEATV-------VLEIYQKLTFREVVSP-QEFKQGEDAEVVCRVSSSPAP 126
Query: 154 VYTWSKG 160
+W
Sbjct: 127 AVSWLYH 133
Score = 40.9 bits (96), Expect = 3e-04
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ + S VE G C AIG P + ++
Sbjct: 1 ALLQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQ 39
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 79.6 bits (196), Expect = 4e-16
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 8/130 (6%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
Y C +T T + + + P S PR + +E + ++L C A
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEP---ISSSAPRTPALVQKPLELMVAHTISLLCPA 236
Query: 365 IGYPIPVYTWSKGEVSIDGSD----GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDP 420
G+P P + W K + G L I V +D+G Y+CV N +G
Sbjct: 237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG- 295
Query: 421 IRKEFNVIVR 430
E + V
Sbjct: 296 ESVETVLTVT 305
Score = 69.2 bits (169), Expect = 9e-13
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQ 397
P F ++ + C A G P+P W + ++ G +++ DG L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 398 IVGLVRQD------AGIYVCVAANGIG 418
+D A +Y C+A N G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFG 89
Score = 65.3 bits (159), Expect = 2e-11
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 26/122 (21%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y C +N + T + + +P PT + G
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVL--------------TVTAPLSAKI-DPPTQTVDFGR 323
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
C G PI +W K DG + VL+I + ++D G+Y C N
Sbjct: 324 PAVFTCQYTGNPIKTVSWMK--------DGKAIGHSESVLRIESVKKEDKGMYQCFVRND 375
Query: 417 IG 418
Sbjct: 376 RE 377
Score = 59.6 bits (144), Expect = 1e-09
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 26/129 (20%)
Query: 305 YSC--SNLF-DITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLR 361
Y+C N F I + V + GN ++
Sbjct: 80 YACLARNQFGSIISRDVHVRAVVA--------QYYEADVN-------KEHVIRGNSAVIK 124
Query: 362 CIA---IGYPIPVYTWSKGE----VSIDGSDGHYKLTLDGVLQIVGLVRQDA-GIYVCVA 413
C+ + + V +W E DG Y + G L I + +D Y C
Sbjct: 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 184
Query: 414 ANGIGDPIR 422
+ + R
Sbjct: 185 KHRLTGETR 193
Score = 51.1 bits (122), Expect = 7e-07
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 94 CQAR-CAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI 152
C+ + G S+ + +S PR + +E + ++L C A G+P
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA 241
Query: 153 PVYTWSK 159
P + W K
Sbjct: 242 PSFRWYK 248
Score = 44.9 bits (106), Expect = 5e-05
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
P F ++ + C A G P+P W +
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIR 40
Score = 40.7 bits (95), Expect = 0.001
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIA---IGY 150
C AR G+ ++ + + GN ++C+ +
Sbjct: 82 CLARNQFGSIISRDV-------HVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVAD 133
Query: 151 PIPVYTWSKGE 161
+ V +W E
Sbjct: 134 FVEVVSWHTDE 144
Score = 40.3 bits (94), Expect = 0.001
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C + G + + V +P PT + G C G PI
Sbjct: 287 CVVNNSVGG-ESVET-------VLTVTAPLSAKI-DPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 154 VYTWSK 159
+W K
Sbjct: 338 TVSWMK 343
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 81.1 bits (200), Expect = 4e-16
Identities = 53/365 (14%), Positives = 101/365 (27%), Gaps = 77/365 (21%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIA---IGY 150
C AR G+ ++ + + GN ++C+ +
Sbjct: 117 CLARNQFGSIISRDV-------HVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVAD 168
Query: 151 PIPVYTWSKGEVSRKFFLRGFISANDLCFLESESGPCTQQEAAWYFDRNSFITMPELTPN 210
+ V +W E F P + + + + + + E+ P
Sbjct: 169 FVEVVSWHTDEEENYF-------------------PGAEYDGKYLVLPSGELHIREVGPE 209
Query: 211 TFLFQWTCVISGK--NARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQY------- 261
+ C + + + S+ V + + +
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALL 269
Query: 262 -IAVCRPL-----YKEGECRPQPQNVCADNCKDDADCT---GQAKCCPNDCG-YSC--SN 309
A P+ YK E + Q V ++ T A D G Y C +N
Sbjct: 270 CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCVVNN 327
Query: 310 LFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI 369
+ T + + +P PT + G C G PI
Sbjct: 328 SVGGESVETVL--------------TVTAPLSAKI-DPPTQTVDFGRPAVFTCQYTGNPI 372
Query: 370 PVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+W K +I S + VL+I + ++D G+Y C N + +
Sbjct: 373 KTVSWMKDGKAIGHS--------ESVLRIESVKKEDKGMYQCFVRNDRES-AEASAELKL 423
Query: 430 RGNYE 434
G ++
Sbjct: 424 GGRFD 428
Score = 78.4 bits (193), Expect = 3e-15
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 302 DCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTL 360
++ L + T +P P F ++ +
Sbjct: 10 WLMLFAAVALIACGSQTLAANPP----------DADQKGPVFLKEPTNRIDFSNSTGAEI 59
Query: 361 RCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQIVGLVRQD------AGIYVCVA 413
C A G P+P W + ++ G +++ DG L +D A +Y C+A
Sbjct: 60 ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 414 ANGIGDPIRKEFNVIV 429
N G I ++ +V
Sbjct: 120 RNQFGSIISRDVHVRA 135
Score = 78.1 bits (192), Expect = 4e-15
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 21/136 (15%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
ND G Y C + + + + N+ P G
Sbjct: 499 ANDGGLYKCIAKSKVGVAEHSAKL--------------NVYGLPYIR--QMEKKAIVAGE 542
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQ-DAGIYVCVAAN 415
+ + C GYPI W + ++ + K+ +G L I + R D Y CVA N
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALP-INRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601
Query: 416 GIGDPIRKEFNVIVRG 431
G R V V
Sbjct: 602 QEGYSARGSLEVQVMV 617
Score = 73.0 bits (179), Expect = 1e-13
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 25/141 (17%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPT-VEAEEG 355
+ G ++C NL TT + N+ PPR+ EPT +G
Sbjct: 686 ASHAGNFTCHARNLAGHQQFTTPL--------------NVYVPPRW--ILEPTDKAFAQG 729
Query: 356 NFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL-----DGVLQIVGLVRQDAGIYV 410
+ + C A G+P P TW K G K + +G L + + + + G Y+
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789
Query: 411 CVAANGIGDPIRKEFNVIVRG 431
C A NGIG + + V+
Sbjct: 790 CEAINGIGSGLSAVIMISVQA 810
Score = 69.2 bits (169), Expect = 2e-12
Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 23/142 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y C N + + + + PP + E G
Sbjct: 398 KEDKGMYQCFVRNDRESAEASAELK----LGGRFD-------PPVI-RQAFQEETMEPGP 445
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSD-------GHYKLTLDGVLQIVGLVRQDAGIY 409
V L+C+A G P P +W I +D + L I + D G+Y
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505
Query: 410 VCVAANGIGDPIRKEFNVIVRG 431
C+A + +G + V G
Sbjct: 506 KCIAKSKVGV-AEHSAKLNVYG 526
Score = 67.3 bits (164), Expect = 8e-12
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVY-TWSKGEVSIDGSDGHYKLTLD 393
+ PR ++ A+ G ++TL C G +P+ W+ +I G +
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673
Query: 394 ---GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
VL I + AG + C A N G + + V
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGH-QQFTTPLNVY 712
Score = 59.2 bits (143), Expect = 2e-09
Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 26/136 (19%)
Query: 305 YSC--SNLF-DITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLR 361
Y+C N F I + V + GN ++
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVA--------QYYEADVN-------KEHVIRGNSAVIK 159
Query: 362 CIA---IGYPIPVYTWSKGEVSI----DGSDGHYKLTLDGVLQIVGLVRQDA-GIYVCVA 413
C+ + + V +W E DG Y + G L I + +D Y C
Sbjct: 160 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 219
Query: 414 ANGIGDPIRKEFNVIV 429
+ + R
Sbjct: 220 KHRLTGETRLSATKGR 235
Score = 51.1 bits (122), Expect = 8e-07
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
A A G+ ++ PD A P F ++ + C A G P+P
Sbjct: 16 AVALIACGSQTLAANPPD------ADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMP 69
Query: 154 VYTWSKG 160
W +
Sbjct: 70 EIIWIRS 76
Score = 45.3 bits (107), Expect = 6e-05
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A+ G SA ++ V P G + + C GYPI
Sbjct: 507 CIAKSKVGV-AEHSA-------KLNVYGLPYIR--QMEKKAIVAGETLIVTCPVAGYPID 556
Query: 154 VYTWSKG 160
W +
Sbjct: 557 SIVWERD 563
Score = 43.4 bits (102), Expect = 2e-04
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C AR G + + V PPR+ EPT +G+ + C A G+P
Sbjct: 694 CHARNLAGH-QQFTT-------PLNVYVPPRW--ILEPTDKAFAQGSDAKVECKADGFPK 743
Query: 153 PVYTWSKG 160
P TW K
Sbjct: 744 PQVTWKKA 751
Score = 43.0 bits (101), Expect = 3e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 118 AVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
PP + E G V L+C+A G P P +W
Sbjct: 425 GRFDPPVI-RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD 466
Score = 42.6 bits (100), Expect = 3e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A+ G S + V PR ++ A+ G ++TL C G +P
Sbjct: 597 CVAKNQEGYSARGSL-------EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649
Query: 154 VY-TWSK 159
+ W+
Sbjct: 650 LNIDWTL 656
Score = 29.9 bits (67), Expect = 2.9
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDP 420
+ + + ++ VA G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQ 25
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 73.1 bits (180), Expect = 4e-16
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
+PP F EG V + G P PV +W + + + +G
Sbjct: 4 APPTFK--VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIG 418
L+I+ R DAG Y C A N G
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYG 86
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 121 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG----EVSRKFFLRGFISAN 175
+PP F EG V + G P PV +W + ++ F +
Sbjct: 4 APPTFK--VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA--EEAEG 59
Query: 176 DLCFLE 181
LC L
Sbjct: 60 GLCRLR 65
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 77.5 bits (191), Expect = 6e-16
Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 19/124 (15%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y+C SN+ + + + + PPRF EP+ ++
Sbjct: 70 KGDAGQYTCYASNVAGKDSCSAQL--------------GVQEPPRFIKKLEPSRIVKQDE 115
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH--YKLTLDGVLQIVGLVRQDAGIYVCVAA 414
C G P W K E I S + VL++ L +D+G Y C A
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
Query: 415 NGIG 418
N G
Sbjct: 176 NAAG 179
Score = 77.1 bits (190), Expect = 8e-16
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y+C N +++T++ + PP F P VE +G
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSL--------------KVKEPPVFRKKPHP-VETLKGA 208
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQDAGIYVCVA 413
V L C G P +W K + + S YK+ + + I+ + D G Y C A
Sbjct: 209 DVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 414 ANGIGDPIRKEFNVIVRG 431
+N +G ++ ++
Sbjct: 268 SNDVGS-YTCVGSITLKA 284
Score = 70.5 bits (173), Expect = 1e-13
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 338 SPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD--- 393
+PP F +P +V+ G T +C G TW+K I G+YK+TL
Sbjct: 4 APPFFD--LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-PGGNYKMTLVENT 60
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L ++ + + DAG Y C A+N G + V+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQ 96
Score = 47.8 bits (114), Expect = 4e-06
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A G + SA ++ V PPRF EP+ ++ C G P
Sbjct: 78 CYASNVAGK-DSCSA-------QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 129
Query: 154 VYTWSKG 160
W K
Sbjct: 130 KVLWYKD 136
Score = 45.1 bits (107), Expect = 3e-05
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A A G+ +SS + V PP F P VE +G V L C G P
Sbjct: 172 CEAHNAAGS-ASSST-------SLKVKEPPVFRKKPHP-VETLKGADVHLECELQGTPPF 222
Query: 154 VYTWSKG 160
+W K
Sbjct: 223 QVSWHKD 229
Score = 38.6 bits (90), Expect = 0.004
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 121 SPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+PP F +P +V+ G T +C G TW+K
Sbjct: 4 APPFFD--LKPVSVDLALGESGTFKCHVTGTAPIKITWAK 41
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 73.3 bits (180), Expect = 6e-16
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI----DGSDGHYKLTL 392
PPR P+ + +G TL C A G P P W KG + D H L
Sbjct: 8 FPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 393 DGVLQIVGLV-----RQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G L + +V R D G+YVCVA N +G+ + + ++ V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 43.6 bits (103), Expect = 1e-05
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG------EVSRKFFLRGF 171
PPR P+ + +G TL C A G P P W KG + R
Sbjct: 6 EDFPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 172 ISANDLCFLESESGPCTQQEAAWY 195
+ + L FL G ++ + Y
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVY 87
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 79.1 bits (195), Expect = 7e-16
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
YSC+ F T T +P +T + + + G + L CIA
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 365 IGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKE 424
G P P W K + ++ + L+I + +D+G Y C+A+N +G IR
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAKFENF-NKALRITNVSEEDSGEYFCLASNKMGS-IRHT 304
Query: 425 FNVIVR 430
+V V+
Sbjct: 305 ISVRVK 310
Score = 76.4 bits (188), Expect = 4e-15
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDG 386
S + P + + V +EG +TL+C G P PV W + D
Sbjct: 104 LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK 163
Query: 387 HYKLTLDGVLQIVGLVRQDA-GIYVCVAANGIGDPIRKEFNVIVR 430
+G L ++ QD Y C A I+++ ++
Sbjct: 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Score = 73.8 bits (181), Expect = 3e-14
Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 21/124 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPT-VEAEEG 355
D G Y C SN T +V + + P + EP + G
Sbjct: 284 EEDSGEYFCLASNKMGSIRHTISV--------------RVKAAPYWL--DEPKNLILAPG 327
Query: 356 NFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAA 414
L C A G P P W GE + + +Y C +
Sbjct: 328 EDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387
Query: 415 NGIG 418
N G
Sbjct: 388 NEHG 391
Score = 73.0 bits (179), Expect = 6e-14
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 326 VYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK--GEVSIDG 383
+ + PP S + + + + C A G P P + W++ +I
Sbjct: 3 IPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62
Query: 384 SDGHYKLTLDGVLQI----VGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G L I G + G Y C A N G + + V
Sbjct: 63 DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Score = 48.3 bits (115), Expect = 4e-06
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 116 RIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ + PP S + + + + C A G P P + W++
Sbjct: 10 QNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR 53
Score = 47.2 bits (112), Expect = 1e-05
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPI 152
C AR GT +++ R+ V+ P + + V +EG +TL+C G P
Sbjct: 94 CFARNKFGTALSNRI-------RLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPS 146
Query: 153 PVYTWSKGEV 162
PV W +
Sbjct: 147 PVIFWMSSSM 156
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 94 CQARC-AGGTFVTSSAAP-DQLENRIAVASPPRFH--NYSEPTVEAEEGNFVTLRCIAIG 149
C AR T + L R P F + + G + L CIA G
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG 248
Query: 150 YPIPVYTWSK 159
P P W K
Sbjct: 249 VPTPDIAWYK 258
Score = 41.8 bits (98), Expect = 5e-04
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C A G+ + + + V + P + EP + G L C A G P
Sbjct: 292 CLASNKMGS-IRHTI-------SVRVKAAPYWL--DEPKNLILAPGEDGRLVCRANGNPK 341
Query: 153 PVYTWSK 159
P W
Sbjct: 342 PTVQWMV 348
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 77.2 bits (190), Expect = 9e-16
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
PP + AE G +T C A G P P +W + I+ ++ + + L
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 251
Query: 398 IVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ ++ D G YVC A N G+ K+ + V
Sbjct: 252 VRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFV 284
Score = 76.8 bits (189), Expect = 1e-15
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
+ + VE G C AIG P + ++ I S + +G
Sbjct: 2 MALLQVTISLS-KVELSVGESKFFTCTAIGEPESIDWYNPQGEKII-STQRVVVQKEGVR 59
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L I +DAGIY C A + G + +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 95
Score = 72.5 bits (178), Expect = 3e-14
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSID-GSDGHYKLTLD 393
I F P E ++G + C P P +W + SD + + +
Sbjct: 94 EIYQKLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 152
Query: 394 GVLQIVGLVRQDAGIYVCVAAN 415
LQI+ + + D GIY C
Sbjct: 153 NNLQILNINKSDEGIYRCEGRV 174
Score = 45.6 bits (108), Expect = 2e-05
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C+ R + + V PP + AE G +T C A G P
Sbjct: 170 CEGRVEARGEIDFRDI------IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 223
Query: 153 PVYTWSKG----EVSRKFFLRG 170
P +W + E + K+ L+G
Sbjct: 224 PAISWFRNGKLIEENEKYILKG 245
Score = 43.7 bits (103), Expect = 8e-05
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
CQA A G ++ + + F P E ++G + C P P
Sbjct: 77 CQATDAKGQTQEATV-------VLEIYQKLTFREVVSP-QEFKQGEDAEVVCRVSSSPAP 128
Query: 154 VYTWSK 159
+W
Sbjct: 129 AVSWLY 134
Score = 41.7 bits (98), Expect = 4e-04
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ + VE G C AIG P + ++
Sbjct: 2 MALLQVTISLS-KVELSVGESKFFTCTAIGEPESIDWYNPQ 41
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 72.0 bits (177), Expect = 1e-15
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
S + EPT + G+ + L+C+A+G PIP Y W K E+ + +
Sbjct: 2 SKLQIC--VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------KKLY 52
Query: 397 QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ + + G Y C N K+ +I+
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 45.0 bits (107), Expect = 2e-06
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
S + EPT + G+ + L+C+A+G PIP Y W K E+
Sbjct: 1 GSKLQIC--VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 42
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 72.4 bits (178), Expect = 1e-15
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 326 VYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD 385
++ ++ R + EG C G P+P TW + + +
Sbjct: 1 MHHHHHHSSKTTLAARILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TS 58
Query: 386 GHYKLTLDG---VLQIVGLVRQDAGIYVCVAANGIG 418
+++T +I + D G Y V N G
Sbjct: 59 ARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG 94
Score = 38.9 bits (91), Expect = 5e-04
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
R + EG C G P+P TW +
Sbjct: 11 TTLAARILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRK 51
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 72.0 bits (177), Expect = 1e-15
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI-DGSDGHYKLTLDG--- 394
PP+ + +EG +T+ C G P P TWS G I G + +
Sbjct: 5 PPKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
L I+ + +QD G+Y N G N+ +R
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHIRS 99
Score = 43.1 bits (102), Expect = 1e-05
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
PP+ + +EG +T+ C G P P TWS G
Sbjct: 3 GIPPKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSCG 42
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 79.1 bits (195), Expect = 1e-15
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 20/136 (14%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y+C SN+ + + + + PPRF EP+ ++
Sbjct: 262 KGDAGQYTCYASNVAGKDSCSAQL--------------GVQEPPRFIKKLEPSRIVKQDE 307
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD--GVLQIVGLVRQDAGIYVCVAA 414
C G P W K E I S ++ VL++ L +D+G Y C A
Sbjct: 308 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 367
Query: 415 NGIGDPIRKEFNVIVR 430
N G ++ V+
Sbjct: 368 NAAGS-ASSSTSLKVK 382
Score = 76.4 bits (188), Expect = 9e-15
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+ G Y+C SN +++ ++ + P P +V+ G
Sbjct: 166 QSHVGQYNCSASNPLGTASSSAKLT-----LSEHEVPPFFDLKPV-------SVDLALGE 213
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVA 413
T +C G TW+K I G+YK+TL L ++ + + DAG Y C A
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNREIR-PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 272
Query: 414 ANGIGDPIRKEFNVIVRG 431
+N G + V+
Sbjct: 273 SNVAGK-DSCSAQLGVQE 289
Score = 74.8 bits (184), Expect = 3e-14
Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 22/136 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y C SN T +++ + +PPRF + G
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSIT--------------LKAPPRFVKKLSD-ISTVVGE 493
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVA 413
V L+ G W K + I + ++ LQ +AG Y C
Sbjct: 494 EVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQI 553
Query: 414 ANGIGDPIRKEFNVIV 429
N G + V
Sbjct: 554 KNEAGT-QECFATLSV 568
Score = 74.5 bits (183), Expect = 4e-14
Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 20/139 (14%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D G Y+C N ++ + PP F V G
Sbjct: 70 HSDVGEYTCKAENSVGAVASSAVLVIKER-----------KLPPSFA-RKLKDVHETLGF 117
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD---GVLQIVGLVRQDAGIYVCVA 413
V C G +W K + D + + + LQI+ + G Y C A
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLK-DDANLQTSFIHNVATLQILQTDQSHVGQYNCSA 176
Query: 414 ANGIGDPIRKEFNVIVRGN 432
+N +G + + +
Sbjct: 177 SNPLGT-ASSSAKLTLSEH 194
Score = 74.1 bits (182), Expect = 4e-14
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
+ PP F P VE +G V L C G P +W K + + S YK+ +
Sbjct: 380 KVKEPPVFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKREL-RSGKKYKIMSEN 437
Query: 395 ---VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ I+ + D G Y C A+N +G ++ ++
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLK 475
Score = 72.9 bits (179), Expect = 1e-13
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD---GV 395
PP F E VEA G +TL+C G P W K + S YK+
Sbjct: 5 PPYFIEPLEH-VEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR-SAPAYKMQFKNNVAS 62
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
L I + D G Y C A N +G + ++++
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGA-VASSAVLVIKE 97
Score = 49.0 bits (117), Expect = 3e-06
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A G + SA ++ V PPRF EP+ ++ C G P
Sbjct: 270 CYASNVAGK-DSCSA-------QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321
Query: 154 VYTWSKG 160
W K
Sbjct: 322 KVLWYKD 328
Score = 46.0 bits (109), Expect = 3e-05
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A A G+ +SS + V PP F P VE +G V L C G P
Sbjct: 364 CEAHNAAGS-ASSST-------SLKVKEPPVFRKKPHP-VETLKGADVHLECELQGTPPF 414
Query: 154 VYTWSKGEV 162
+W K +
Sbjct: 415 QVSWHKDKR 423
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A + G V SSA PP F V G V C G
Sbjct: 78 CKAENSVGA-VASSAV----LVIKERKLPPSFA-RKLKDVHETLGFPVAFECRINGSEPL 131
Query: 154 VYTWSKGEV 162
+W K
Sbjct: 132 QVSWYKDGE 140
Score = 42.5 bits (100), Expect = 4e-04
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
PP F E VEA G +TL+C G P W K
Sbjct: 5 PPYFIEPLEH-VEAAIGEPITLQCKVDGTPEIRIAWYK 41
Score = 42.5 bits (100), Expect = 4e-04
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A G+ T I + +PPRF + G V L+ G
Sbjct: 457 CKASNDVGS-DTCVG-------SITLKAPPRFVKKLSD-ISTVVGEEVQLQATIEGAEPI 507
Query: 154 VYTWSK 159
W K
Sbjct: 508 SVAWFK 513
Score = 42.1 bits (99), Expect = 5e-04
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A GT SS+A L PP F + +V+ G T +C G
Sbjct: 174 CSASNPLGT--ASSSAKLTLSEH---EVPPFF-DLKPVSVDLALGESGTFKCHVTGTAPI 227
Query: 154 VYTWSKG 160
TW+K
Sbjct: 228 KITWAKD 234
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 76.9 bits (189), Expect = 1e-15
Identities = 33/143 (23%), Positives = 45/143 (31%), Gaps = 15/143 (10%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVS------PAYPVYTSTPYTPNIPSPPRFHNYSEPTV 350
PND G Y + T +S + R V
Sbjct: 173 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 232
Query: 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD----GVLQIVGLVRQDA 406
+EG + L C G P P +W K E ++ D H L + I G+ D+
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD-HCNLKFEAGRTAYFTINGVSTADS 291
Query: 407 GIYVCVAANGIGDPIRKEFNVIV 429
G Y V N G +F V V
Sbjct: 292 GKYGLVVKNKYGS-ETSDFTVSV 313
Score = 65.7 bits (160), Expect = 9e-12
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGY-PIPVYTWSKGEVSIDGSDGHYKLTLD 393
+ + P F + E V L+C W K E I D +
Sbjct: 3 DPFTGPHF--VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDG 59
Query: 394 G-VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
L I ++DAGIY + + G + ++
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEA 97
Score = 63.0 bits (153), Expect = 5e-11
Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 12/125 (9%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y + + + + ++ +++
Sbjct: 70 KKDAGIYEVILKDDRGKDKSRLKLVDEAF-----KELMMEVCKKIALSATDLKIQSTAEG 124
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQDAGIYVCVA 413
+ WS +I K + G LQI D G YV
Sbjct: 125 IQLYSFVTYYVEDLKVNWSHNGSAIR-YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 414 ANGIG 418
+G
Sbjct: 184 FDGKT 188
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 87 NFMTEEACQARCAGGTFVTSSAAPDQLENR-IAVASPPRFHNYSEPTVEAEEGNFVTLRC 145
+ T +G + + A +L+ IA + R V +EG + L C
Sbjct: 185 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC 244
Query: 146 IAIGYPIPVYTWSKGEV 162
G P P +W K E
Sbjct: 245 NVWGDPPPEVSWLKNEK 261
Score = 36.4 bits (84), Expect = 0.021
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGY-PIPVYTWSKGEV 162
+ P F + E V L+C W K E
Sbjct: 4 PFTGPHF--VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDER 46
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 71.6 bits (176), Expect = 2e-15
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 333 TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL 392
+ + SPP F + P V G L+C+ +G P PV W KG + +
Sbjct: 7 SGDQGSPPCFLRFPRP-VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA-ASERLSFPA 64
Query: 393 DG---VLQIVGLVRQDAGIYVCVAANGIG 418
DG L + + DAG+YVC A N G
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAG 93
Score = 39.3 bits (92), Expect = 3e-04
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
SPP F + P V G L+C+ +G P PV W KG
Sbjct: 10 QGSPPCFLRFPRP-VRVVSGAEAELKCVVLGEPPPVVVWEKG 50
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 74.4 bits (183), Expect = 2e-15
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD---- 393
P F E + + TL C G+P P+ W + I Y++
Sbjct: 4 APHF--KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIG 418
L I + DA +Y A N G
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGG 86
Score = 74.0 bits (182), Expect = 2e-15
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 297 KCCPNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTP-YTPNIPSPPRFHNYSEPTVEA 352
+D Y +N + T ++ V + P V A
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLE----VEVPAKIHLPKTLEGMG-------AVHA 116
Query: 353 EEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG----VLQIVGLVRQDAGI 408
G V+++ G P PV TW KG+ ID ++GHY++ + ++ G+ R+DAG
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLID-NNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 409 YVCVAANGIGDPIRKEFNVIVR 430
YV A N G +K + V
Sbjct: 176 YVVCAKNRFGI-DQKTVELDVA 196
Score = 42.0 bits (99), Expect = 2e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
A P F E + + TL C G+P P+ W +
Sbjct: 2 AMAPHF--KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ 41
Score = 38.5 bits (90), Expect = 0.003
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 118 AVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
A P+ V A G V+++ G P PV TW KG
Sbjct: 100 AKIHLPKT--LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG 141
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 71.2 bits (175), Expect = 2e-15
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---V 395
P+ S ++ + G L IG P P TW+ G+ +
Sbjct: 2 KPKILTASR-KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA-LAPELLVDAKSSTTS 59
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ R D+G Y N +G+ F VIV+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
Score = 39.2 bits (92), Expect = 3e-04
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
P+ S ++ + G L IG P P TW+ G+
Sbjct: 2 KPKILTASR-KIKIKAGFTHNLEVDFIGAPDPTATWTVGDS 41
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 77.0 bits (189), Expect = 2e-15
Identities = 32/146 (21%), Positives = 44/146 (30%), Gaps = 17/146 (11%)
Query: 300 PNDCG-YSC---------SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRF---HNYS 346
D G YSC + T + T P +
Sbjct: 70 HEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMD 129
Query: 347 EPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---DGVLQIVGLVR 403
+ + N V RC A G P P +W K G + L L + +V
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 189
Query: 404 QDAGIYVCVAANGIGDPIRKEFNVIV 429
D G Y CV N G IR+ + + V
Sbjct: 190 SDRGNYTCVVENKFGS-IRQTYTLDV 214
Score = 68.1 bits (166), Expect = 2e-12
Identities = 18/116 (15%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGV 395
P + + G+ V L C G P+ W K + +
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV-PSERVLVG-PQR 62
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNYEQWYYDRDTDSCQPFQYG 451
LQ++ +D+G Y C V + D G
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Score = 65.0 bits (158), Expect = 2e-11
Identities = 30/137 (21%), Positives = 42/137 (30%), Gaps = 28/137 (20%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
P+D G Y+C N F T T+ V +P P A G+
Sbjct: 189 PSDRGNYTCVVENKFGSIRQTYTLD----VLERSP-----HRPILQAGLPANQT-AVLGS 238
Query: 357 FVTLRCIAIGYPIPVYTWSKGE---------------VSIDGSDGHYKLTLDGVLQIVGL 401
V C P W K + + + VL + +
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 402 VRQDAGIYVCVAANGIG 418
+DAG Y C+A N IG
Sbjct: 299 TFEDAGEYTCLAGNSIG 315
Score = 43.8 bits (103), Expect = 9e-05
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 105 TSSAAPDQLENRIAVASPPRF---HNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
D+ E+ P + + + N V RC A G P P +W K
Sbjct: 102 DDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159
Score = 39.2 bits (91), Expect = 0.003
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSK 159
A P + + G+ V L C G P+ W K
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK 45
Score = 35.4 bits (81), Expect = 0.046
Identities = 8/41 (19%), Positives = 9/41 (21%), Gaps = 1/41 (2%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
P A G+ V C P W K
Sbjct: 221 RPILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLKHV 260
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 74.0 bits (182), Expect = 2e-15
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 21/138 (15%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y+C +N T++ + + + P + G+
Sbjct: 72 QEDEGVYTCIATNEVGEVETSSKLL----LQAT----PQFHPGYPL----KEKYYGAVGS 119
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQ-DAGIYVCV 412
+ L + IG P+P TW G+ + + + + L + + R+ AG Y
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQ-NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQ 178
Query: 413 AANGIGDPIRKEFNVIVR 430
+N G + +V ++
Sbjct: 179 LSNVFGT-VDAILDVEIQ 195
Score = 73.2 bits (180), Expect = 5e-15
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
P E V + G L C +G P+P W + + YK++ DG
Sbjct: 6 EAPGI--RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI-QSRKYKMSSDGRT 62
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIG 418
L ++ ++D G+Y C+A N +G
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVG 87
Score = 47.4 bits (113), Expect = 3e-06
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFH--NYSEPTVEAEEGNFVTLRCIAIGYP 151
C A G V +S+ ++ + + P+FH + G+ + L + IG P
Sbjct: 80 CIATNEVGE-VETSS-------KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP 131
Query: 152 IPVYTWSKG 160
+P TW G
Sbjct: 132 VPAMTWFHG 140
Score = 41.6 bits (98), Expect = 2e-04
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
P E V + G L C +G P+P W +
Sbjct: 5 GEAPGI--RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF 44
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 78.6 bits (193), Expect = 2e-15
Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 15/135 (11%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y C + + P I G
Sbjct: 634 LQDQGDYVCLAQDRKTKKRHCVVRQ----LTVLERVAPTITGNLE-------NQTTSIGE 682
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
+ + C A G P P W K ++ G + L I + ++D G+Y C A +
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 417 IGDPIRKEFNVIVRG 431
+G + E I+ G
Sbjct: 743 LGC-AKVEAFFIIEG 756
Score = 76.3 bits (187), Expect = 1e-14
Identities = 56/373 (15%), Positives = 98/373 (26%), Gaps = 78/373 (20%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYP 151
C A T S+ + V P S VEA G V + +GYP
Sbjct: 307 CAASSGLMTKKNST--------FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYP 358
Query: 152 IPVYTWSKGEVSRKFFLRGFISANDLCFL----ESESGP--CTQQEAAWYFDRNSFITM- 204
P W K I A + + E ++G ++ +++
Sbjct: 359 PPEIKWYKN--GIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Query: 205 ----PELTPNTFLFQWTCVISGKNARCRCF---NP-------CQNQDPQCPSNTRCAVDL 250
P++ + + G C P + +C + AV +
Sbjct: 417 VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSV 476
Query: 251 VRNPETRETQYIAVCRPLYKEGECRPQPQNVCADNCKDDADCTGQAKCCPNDCG-YSC-- 307
E + + + K + Q + N + N Y C
Sbjct: 477 TNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV----STLVIQAANVSALYKCEA 532
Query: 308 SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGY 367
N + ++ P +P ++ E V+L C A
Sbjct: 533 VNKVGRGERVISF--------------HVTRGPEIT--LQPDMQPTEQESVSLWCTADRS 576
Query: 368 PIPVYTWSK-GEVSIDGSDGHYKLTLD---------------------GVLQIVGLVRQD 405
TW K G + G + ++++ QD
Sbjct: 577 TFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQD 636
Query: 406 AGIYVCVAANGIG 418
G YVC+A +
Sbjct: 637 QGDYVCLAQDRKT 649
Score = 74.0 bits (181), Expect = 7e-14
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 19/135 (14%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D G Y+C S+ +T V P+ VEA G
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVHEK-----PFVAFGSGME-------SLVEATVGE 346
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
V + +GYP P W K + ++ + + + VL I+ + +D G Y + N
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVILTNP 403
Query: 417 IGDPIRK-EFNVIVR 430
I + +++V
Sbjct: 404 ISKEKQSHVVSLVVY 418
Score = 60.2 bits (145), Expect = 1e-09
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 13/107 (12%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK------------GEVSIDGS 384
+E G + L C A ++ +
Sbjct: 221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 280
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G L I G+ R D G+Y C A++G+ + V V
Sbjct: 281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHE 326
Score = 60.2 bits (145), Expect = 1e-09
Identities = 20/139 (14%), Positives = 34/139 (24%), Gaps = 15/139 (10%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
ND G Y C + V +P I S + + +
Sbjct: 95 GNDTGAYKCFYRETDLASVIYVYVQ--------DYRSPFIASVSD--QHGVVYITENKNK 144
Query: 357 FVTLRCIAIGYPIPVYTWS-KGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415
V + C+ + V + E I + AG+ C A
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKI 204
Query: 416 GIGDPIRKEFNVIVRGNYE 434
+ ++V Y
Sbjct: 205 NDES-YQSIMYIVVVVGYR 222
Score = 56.7 bits (136), Expect = 2e-08
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 8/86 (9%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
PR + + + + + C G + W + + DG
Sbjct: 29 LDLPRLS-IQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSE-QRVEVTECSDGLF 84
Query: 395 --VLQIVGLVRQDAGIYVCVAANGIG 418
L I ++ D G Y C
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYRETDL 110
Score = 48.6 bits (115), Expect = 6e-06
Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 39/142 (27%)
Query: 326 VYTSTPYTPNIPSPPRFHN--YSEPTVEAEEGNFVTLRCIAIGYPIPVY-TWSK------ 376
S + + PP+ P + G TL C P P + W
Sbjct: 407 EKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEEC 466
Query: 377 --------------------------GEVSIDGSDGHYKLTLDG---VLQIVGLVRQDAG 407
G I+ + + L V +V +
Sbjct: 467 ANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSA 526
Query: 408 IYVCVAANGIGDPIRKEFNVIV 429
+Y C A N +G + + V
Sbjct: 527 LYKCEAVNKVGR-GERVISFHV 547
Score = 43.6 bits (102), Expect = 2e-04
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 5/68 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A+ + + P E G + + C A G P P
Sbjct: 642 CLAQDRKTK-KRHCV---VRQLTVLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPP 696
Query: 154 VYTWSKGE 161
W K
Sbjct: 697 QIMWFKDN 704
Score = 39.7 bits (92), Expect = 0.002
Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A+ ++ + + +E G + L C A
Sbjct: 200 CEAKINDESYQSIMYI-----VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV 254
Query: 154 VYTWSK 159
++
Sbjct: 255 GIDFNW 260
Score = 33.2 bits (75), Expect = 0.28
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C R V D IA S + + + V + C+ +
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQ----HGVVYITENKNKTVVIPCLGSISNLN 158
Query: 154 VYTWSK 159
V ++
Sbjct: 159 VSLCAR 164
Score = 31.7 bits (71), Expect = 0.93
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 14/70 (20%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A + S PR + + + + + C G
Sbjct: 14 CVETRAASVGLPS-----------VSLDLPRLS-IQKDILTIKANTTLQITC--RGQRDL 59
Query: 154 VYTWSKGEVS 163
+ W +
Sbjct: 60 DWLWPNNQSG 69
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 73.7 bits (181), Expect = 4e-15
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCI-AIGYPIPVYTWSKGEVSID-------GSDGHY 388
F EP +G L C G P P W K V +D G+
Sbjct: 107 LRDDFR--VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 389 KLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
++ G L I + D G Y C+A N +G +IV+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 68.7 bits (168), Expect = 2e-13
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 337 PSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK--GEVSIDGSDGHYKLTLD 393
PR PT + ++ TL C G P P W K VS + H D
Sbjct: 7 YQSPRI--IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 394 GVL----QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
G L + G QD G Y CVA N +G + + ++ +
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 40.6 bits (95), Expect = 5e-04
Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVAS-PPRFHNYSEPT-VEAEEGNFVTLRCI-AIGY 150
C A+ G V+ A + +A F EP +G L C G
Sbjct: 86 CVAKNRVGQAVSRHA-------SLQIAVLRDDFR--VEPKDTRVAKGETALLECGPPKGI 136
Query: 151 PIPVYTWSKGEVSRKFFLRGFISAND 176
P P W K V A+
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASS 162
Score = 39.5 bits (92), Expect = 0.002
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 121 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
PR PT + ++ TL C G P P W K
Sbjct: 8 QSPRI--IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK 45
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 70.1 bits (172), Expect = 4e-15
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
+ E G VTL C P P W K DG L VL
Sbjct: 9 EEVQLVVEPEGG-AVAPGGTVTLTCEVPAQPSPQIHWMK-----DGVP--LPLPPSPVLI 60
Query: 398 IVGLVRQDAGIYVCVAANGIGDP-IRKEFNVIVR 430
+ + QD G Y CVA + P + ++ +
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSISII 94
Score = 40.9 bits (96), Expect = 8e-05
Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ E G VTL C P P W K
Sbjct: 7 GLEEVQLVVEPEGG-AVAPGGTVTLTCEVPAQPSPQIHWMK 46
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 69.7 bits (171), Expect = 6e-15
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
S E + G+ + LRC W + V + ++T ++
Sbjct: 2 SSGSSGVEVESFL-VHPGDLLQLRCRLRDDV-QSINWLRDGVQL-AESNRTRIT-GEEVE 57
Query: 398 IVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ V D+G+Y CV ++ G F+V V
Sbjct: 58 VQDSVPADSGLYACVTSSPSGS-DTTYFSVNV 88
Score = 36.2 bits (84), Expect = 0.004
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
S E + G+ + LRC W +
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRCRLRDDV-QSINWLR 38
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 69.7 bits (171), Expect = 8e-15
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 337 PSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG- 394
PPRF P + +EG F + G P P +W ++ D H + +
Sbjct: 3 MGPPRF--IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 395 --VLQIVGLVRQDAGIYVCVAANGIG 418
L + DAG Y CVA N G
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAG 86
Score = 39.2 bits (92), Expect = 4e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 118 AVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
PPRF P + +EG F + G P P +W
Sbjct: 1 GAMGPPRF--IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL 41
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 69.7 bits (171), Expect = 8e-15
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQI 398
P E G + + C A G P P W K ++ G + L I
Sbjct: 10 APTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 399 VGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ ++D G+Y C A + +G + E I+ G
Sbjct: 69 RRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEG 100
Score = 38.9 bits (91), Expect = 6e-04
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 117 IAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ P E G + + C A G P P W K
Sbjct: 5 VLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFKD 47
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 70.0 bits (172), Expect = 8e-15
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
S P+ + E + G V L G TW K I H K+
Sbjct: 6 SGPQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ-ESEHMKVENSENGS 63
Query: 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
L I+ ++ G Y + N +G + + N+ V
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVD 99
Score = 40.8 bits (96), Expect = 2e-04
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
S P+ + E + G V L G TW K
Sbjct: 6 SGPQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKF 44
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 72.1 bits (177), Expect = 1e-14
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+ G YS +N T+T + V +PP F + + +G+
Sbjct: 72 KANSGRYSLKATNGSGQATSTAELL----VKAE-------TAPPNFVQRLQS-MTVRQGS 119
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQDAGIYVCVA 413
V L+ G P PV + + I S ++++ +G L I +D+G Y A
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQ-SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNA 178
Query: 414 ANGIG 418
N +G
Sbjct: 179 TNSVG 183
Score = 71.7 bits (176), Expect = 1e-14
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH-YKLTLDG-- 394
P F V EG+ T G+P+P +W + I S +++
Sbjct: 5 APTF--TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIG 418
L I + + ++G Y A NG G
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG 87
Score = 40.1 bits (94), Expect = 8e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
+A G TS+A +L + A +PP F + + +G+ V L+ G P P
Sbjct: 80 LKATNGSGQ-ATSTA---ELLVK-AETAPPNFVQRLQS-MTVRQGSQVRLQVRVTGIPTP 133
Query: 154 VYTWSKG 160
V + +
Sbjct: 134 VVKFYRD 140
Score = 39.7 bits (93), Expect = 0.001
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 122 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
P F V EG+ T G+P+P +W +
Sbjct: 5 APTF--TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFR 41
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 70.4 bits (172), Expect = 1e-14
Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 18/102 (17%)
Query: 333 TPNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH---- 387
P F P + G V L C A+G P+P W +
Sbjct: 15 VPRGSHMAGF--VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDG 72
Query: 388 -----------YKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
Y + I LV +D G Y C A+N
Sbjct: 73 ARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Score = 41.9 bits (98), Expect = 9e-05
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ F P + G V L C A+G P+P W
Sbjct: 18 GSHMAGF--VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWF 57
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 73.8 bits (181), Expect = 1e-14
Identities = 19/135 (14%), Positives = 31/135 (22%), Gaps = 18/135 (13%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+ G Y C +TT + + P N V EG
Sbjct: 60 FKNTGTYRCTELEDPMAGSTTIHL--------------YVKDPAHSWNLLAQEVTVVEGQ 105
Query: 357 FVTLRCIAIGYPI-PVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415
L C+ + + + Y + I D+ YVC
Sbjct: 106 EAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV 165
Query: 416 GIGDPIRKEFNVIVR 430
+ + V
Sbjct: 166 NGRESTSTGIWLKVN 180
Score = 62.7 bits (152), Expect = 6e-11
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 333 TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-----GEVSIDGSDGH 387
P PP+ V G + C A + K E+ ++
Sbjct: 180 NRVHPEPPQIKLEPSKLV-RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L + + QDAGIY CVA+N +G N V
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQV 279
Score = 49.9 bits (119), Expect = 9e-07
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
P S P + E G VTLRC++ G + W D + L
Sbjct: 2 DPAPVIE-PSGPELVVEPGETVTLRCVSNG-SV---EWDGPISPYWTLDPE---SPGSTL 53
Query: 397 QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
++ G Y C ++ V+
Sbjct: 54 TTRNATFKNTGTYRCTELEDPMA-GSTTIHLYVKD 87
Score = 42.6 bits (100), Expect = 2e-04
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+ G ++ L+ PP+ V G + C A +
Sbjct: 161 CKTMVNGRESTSTGI---WLKVNRVHPEPPQIKLEPSKLV-RIRGEAAQIVCSATNAEVG 216
Query: 154 VYTWSK 159
K
Sbjct: 217 FNVILK 222
Score = 37.6 bits (87), Expect = 0.008
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 9/67 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI- 152
C +++ + V P N V EG L C+ +
Sbjct: 68 CTELEDPMA-GSTTI-------HLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK 119
Query: 153 PVYTWSK 159
+ +
Sbjct: 120 DSVSLMR 126
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 73.0 bits (179), Expect = 1e-14
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 329 STPYTPNIPSPPRF---HNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD 385
+ P T P + + + N V RC A G P P +W K G
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 386 GHYKLTL---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ L L + +V D G Y CV N G IR+ + + V
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDV 106
Score = 67.7 bits (165), Expect = 8e-13
Identities = 35/149 (23%), Positives = 49/149 (32%), Gaps = 28/149 (18%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
P+D G Y+C N F T T+ V +P P A G+
Sbjct: 81 PSDRGNYTCVVENKFGSIRQTYTLD----VLERSP-----HRPILQAGLPA-NQTAVLGS 130
Query: 357 FVTLRCIAIGYPIPVYTWSKGE--------------VSIDGSDGHYKLTLDGVLQIVGLV 402
V C P W K V++ S + D L++ +
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
Query: 403 RQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+D G Y+C A N IG K F + V G
Sbjct: 191 ERDGGEYLCRATNFIGV-AEKAFWLSVHG 218
Score = 41.8 bits (98), Expect = 3e-04
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 120 ASPPRF---HNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
P + + + N V RC A G P P +W K
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 51
Score = 36.5 bits (84), Expect = 0.014
Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 1/44 (2%)
Query: 118 AVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
+ P A G+ V C P W K
Sbjct: 110 SPHRPILQAGLPA-NQTAVLGSDVEFHCKVYSDAQPHIQWLKHV 152
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 75.1 bits (184), Expect = 1e-14
Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 7/132 (5%)
Query: 305 YSCSNL-FDITTTTTTVSPAYPVYTSTPYTPNI---PSPPRFHNYSEPTVEAEEGNFVTL 360
C + ++ S +YP+ + +P P Y VE + +TL
Sbjct: 10 IKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTV-YEAAAVEVDVSASITL 68
Query: 361 RCIAIGYPIPVYTWSKGEVSIDGSDG-HYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419
+ + W S++ + + I+ + AG Y+ + +
Sbjct: 69 QVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN 128
Query: 420 PIRKEFNVIVRG 431
F V +R
Sbjct: 129 -YTILFTVSIRN 139
Score = 67.0 bits (163), Expect = 5e-12
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 4/98 (4%)
Query: 335 NIPSPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD 393
I + + E ++ YP TW+ S L
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF--PCEQKGLDNG 377
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ + G Y+ A N K F + +R
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRS 414
Score = 58.1 bits (140), Expect = 4e-09
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDG 386
+ +T +I + + P E L CI+ P P+ W +
Sbjct: 129 YTILFTVSIRNTLLYTL-RRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEE 186
Query: 387 HYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ + L D C A N +G + F + +
Sbjct: 187 SPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLN 227
Score = 57.4 bits (138), Expect = 7e-09
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGS-- 384
+ +T ++ P+ + P + + G + +RC A+ TW +++
Sbjct: 218 CTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Query: 385 ------DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
+ + + + R D G Y C ++
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Score = 47.4 bits (112), Expect = 9e-06
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 101 GTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
++ S +P+ L + S + VE + +TL+ + W
Sbjct: 28 SSYPMVSESPEDLGCALRPQSSGTVY--EAAAVEVDVSASITLQVLVDAPGNISCLWVF 84
Score = 40.8 bits (95), Expect = 0.001
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 103 FVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
F+ S A + +++ + + P E L CI+ P P+ W +
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQ-DALVCISESVPEPIVEWVLCDS 178
Query: 163 SRKF 166
+
Sbjct: 179 QGES 182
Score = 38.1 bits (88), Expect = 0.008
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 116 RIAVASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVS 163
+ + + + E ++ YP TW+ S
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Score = 33.9 bits (77), Expect = 0.14
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPI 152
C AR G T I + P+ + P + + G + +RC A+
Sbjct: 208 CCARNELGRECTRLF-------TIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 153 PVYTWSKG 160
TW
Sbjct: 258 FGLTWELE 265
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 72.6 bits (178), Expect = 1e-14
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 335 NIPSPPRFHNYSEP---TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT 391
N P + N + N V RC A G P+P W K
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 392 L---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ L + +V D G Y CV N G I +++ V
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 110
Score = 64.9 bits (158), Expect = 6e-12
Identities = 27/135 (20%), Positives = 38/135 (28%), Gaps = 26/135 (19%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
P+D G Y+C N + T + V + P G
Sbjct: 85 PSDKGNYTCVVENEYGSINHTYHLD----VVERSR-----HRPILQAGLPANA-STVVGG 134
Query: 357 FVTLRCIAIGYPIPVYTWSKG------EVSIDGS-------DGHYKLTLDGVLQIVGLVR 403
V C P W K + DG + VL + +
Sbjct: 135 DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194
Query: 404 QDAGIYVCVAANGIG 418
DAG Y+C +N IG
Sbjct: 195 ADAGEYICKVSNYIG 209
Score = 43.7 bits (103), Expect = 7e-05
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 109 APDQLENRIAVASPPRFHNYSEP---TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
A D + P + N + N V RC A G P+P W K
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK 55
Score = 36.0 bits (83), Expect = 0.020
Identities = 7/40 (17%), Positives = 7/40 (17%), Gaps = 1/40 (2%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
P G V C P W K
Sbjct: 118 PILQAGLPANA-STVVGGDVEFVCKVYSDAQPHIQWIKHV 156
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 68.7 bits (168), Expect = 2e-14
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 331 PYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKL 390
P P P E ++ G+ + LRC W + V + ++
Sbjct: 1 PTLPEQAQPWGVPVEVE-SLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQL-VESNRTRI 57
Query: 391 TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
T +++ + D+G+Y CV ++ G F+V V
Sbjct: 58 T-GEEVEVRDSIPADSGLYACVTSSPSGS-DTTYFSVNV 94
Score = 34.0 bits (78), Expect = 0.025
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 118 AVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
A P E ++ G+ + LRC W +
Sbjct: 5 EQAQPWGVPVEVE-SLLVHPGDLLQLRCRLRDDV-QSINWLR 44
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 69.0 bits (169), Expect = 2e-14
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 337 PSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG- 394
P F +P + EG+ V L C P P W + + + L D
Sbjct: 13 KRAPMF--IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 395 ---VLQIVGLVRQDAGIYVCVAANGIG 418
L I + ++DAG Y A N G
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAG 97
Score = 36.2 bits (84), Expect = 0.006
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
P F +P + EG+ V L C P P W +
Sbjct: 12 HKRAPMF--IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN 52
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 75.0 bits (184), Expect = 3e-14
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Query: 336 IPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV 395
P+ S + E+ + V C W G+ S+ S +
Sbjct: 463 SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQ-SLPVSPRLQLSNGNRT 521
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L + + R DA YVC N + + V
Sbjct: 522 LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 71.1 bits (174), Expect = 4e-13
Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 11/132 (8%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
N+ G Y+C T T VY PP+ S + E+ + V
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTITVY---------AEPPKPFITSNNSNPVEDEDAV 307
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
L C Y W S+ S + L ++ + R D G Y C N +
Sbjct: 308 ALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS 366
Query: 419 DPIRKEFNVIVR 430
+ V
Sbjct: 367 VDHSDPVILNVL 378
Score = 71.1 bits (174), Expect = 5e-13
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 1/93 (1%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
P P+ S + E+ + V C W + S+ S + L
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQ-SLPVSPRLQLSNGNRTL 166
Query: 397 QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ + R D Y C N + + V
Sbjct: 167 TLFNVTRNDTASYKCETQNPVSARRSDSVILNV 199
Score = 67.7 bits (165), Expect = 5e-12
Identities = 20/109 (18%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
S N+ P S G + L C A P Y+W +
Sbjct: 191 RSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--- 247
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIR-KEFNVIVRGNYEQ 435
L I + ++G Y C A N R + V +
Sbjct: 248 ------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK 290
Score = 65.4 bits (159), Expect = 3e-11
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
S P T ++ P S P G + L C + P P Y+W + +
Sbjct: 547 RSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT--- 603
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
VL I + + G Y C +N
Sbjct: 604 ------QVLFIAKITPNNNGTYACFVSNLAT 628
Score = 63.0 bits (153), Expect = 1e-10
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
S P N+ P S G ++L C A P Y+W DG+
Sbjct: 369 HSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI--------DGN 420
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
L I + +++G+Y C A N
Sbjct: 421 I-QQHTQELFISNITEKNSGLYTCQANNSAS 450
Score = 60.7 bits (147), Expect = 7e-10
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 18/89 (20%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE------------------VSIDGSDGHYK 389
EG V L + + Y+W KGE G
Sbjct: 7 TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 390 LTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
+ + L I +++ D G Y
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDL 95
Score = 46.1 bits (109), Expect = 3e-05
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+ + + S + V P S G + L C A P
Sbjct: 181 CETQNPVSARRSDSV-------ILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPA 233
Query: 154 VYTWSKGEV 162
Y+W
Sbjct: 234 QYSWFVNGT 242
Score = 42.6 bits (100), Expect = 3e-04
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 7/66 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C + + + V P S G ++L C A P
Sbjct: 359 CGIQNELSVDHSDPV-------ILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA 411
Query: 154 VYTWSK 159
Y+W
Sbjct: 412 QYSWLI 417
Score = 41.9 bits (98), Expect = 5e-04
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 7/66 (10%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C + + + + V P S P G + L C + P P
Sbjct: 537 CGIQNSVSANRSDPV-------TLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP 589
Query: 154 VYTWSK 159
Y+W
Sbjct: 590 QYSWRI 595
Score = 40.3 bits (94), Expect = 0.002
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 117 IAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
A P+ S + E+ + V C W G+
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQ 505
Score = 39.9 bits (93), Expect = 0.002
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
P+ S + E+ + V C W +
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQ 149
Score = 39.6 bits (92), Expect = 0.003
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 131 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
EG V L + + Y+W KGE
Sbjct: 7 TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGE 37
Score = 39.2 bits (91), Expect = 0.004
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
CQA + ++ + A PP+ S + E+ + V L C
Sbjct: 265 CQAHNSDTGLNRTTVTTITV-----YAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT 319
Query: 154 VYTWSKGE 161
W +
Sbjct: 320 YLWWVNNQ 327
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 72.7 bits (178), Expect = 3e-14
Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 18/135 (13%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+ G Y C + + + P R N V E
Sbjct: 60 FQNTGTYRCTEPGDPLGGSAAIHL--------------YVKDPARPWNVLAQEVVVFEDQ 105
Query: 357 FVTLRCIAIGYPI-PVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415
L C+ + + + +Y + I + Y C A
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM 165
Query: 416 GIGDPIRKEFNVIVR 430
G + + V+
Sbjct: 166 GGRKVMSISIRLKVQ 180
Score = 60.0 bits (145), Expect = 5e-10
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 7/102 (6%)
Query: 333 TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT- 391
IP PP V G + C A + + + +
Sbjct: 180 QKVIPGPPALTLVPAELV-RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHN 238
Query: 392 ----LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L + + Q AG Y CVA+N G V
Sbjct: 239 NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRV 279
Score = 48.0 bits (114), Expect = 4e-06
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
S P S P + + G VTLRC+ G V W +L
Sbjct: 3 SIPVIEP-SVPELVVKPGATVTLRCVGNG---SV-EWDGPPSPHWTLYSDGS---SSILS 54
Query: 398 IVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
Q+ G Y C ++ V+
Sbjct: 55 TNNATFQNTGTYRCTEPGDPL-GGSAAIHLYVK 86
Score = 43.0 bits (101), Expect = 2e-04
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A G ++ S +L+ + + PP V G + C A +
Sbjct: 161 CSALMGGRKVMSISI---RLKVQKVIPGPPALTLVPAELV-RIRGEAAQIVCSASSVDVN 216
Query: 154 VYTWSKGEVSR 164
+ + ++
Sbjct: 217 FDVFLQHNNTK 227
Score = 38.0 bits (88), Expect = 0.006
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 9/69 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI- 152
C +++ + V P R N V E L C+ +
Sbjct: 68 CTEPGDPLG-GSAAI-------HLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLE 119
Query: 153 PVYTWSKGE 161
+ +
Sbjct: 120 AGVSLVRVR 128
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 70.4 bits (172), Expect = 4e-14
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 9/84 (10%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAG 407
+G +TL + P + L + L QD+G
Sbjct: 105 SDTHLLQGQSLTLTLESPPGSSPSVQCRS--------PRGKNIQGGKTLSVSQLELQDSG 156
Query: 408 IYVCVAANGIGDPIRKEFNVIVRG 431
+ C + + +++V
Sbjct: 157 TWTCTVLQNQK-KVEFKIDIVVLA 179
Score = 53.8 bits (129), Expect = 2e-08
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKG-EVSIDGSDGHYKLTL--------------- 392
V ++G+ V L C A + W ++ I G+ G +
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 63
Query: 393 ---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ L I L +D+ Y+C + + F +
Sbjct: 64 DQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 104
Score = 40.7 bits (95), Expect = 5e-04
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 112 QLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
++E++ F + +G +TL + P
Sbjct: 86 EVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSP 134
Score = 36.1 bits (83), Expect = 0.016
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 132 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
V ++G+ V L C A + W
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSN 33
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 68.1 bits (167), Expect = 4e-14
Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 337 PSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG- 394
P F + + EG VT C G P P W K I HY + D
Sbjct: 6 SGAPFFE--MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 395 ---VLQIVGLVRQDAGIYVCVAANGIG 418
L D G Y +AAN G
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQG 90
Score = 34.3 bits (79), Expect = 0.023
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ P F + + EG VT C G P P W K
Sbjct: 6 SGAPFFE--MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFK 44
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 67.3 bits (165), Expect = 4e-14
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 336 IPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
I S P + + A G P P W+K +I G YKL+ D
Sbjct: 3 ISSKPVI--VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI-TQGGKYKLSEDK 59
Query: 395 ---VLQIVGLVRQDAGIYVCVAANGIG 418
L+I D+G+Y C N G
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAG 86
Score = 39.6 bits (93), Expect = 3e-04
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 10/68 (14%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEV----SRKFFLRGFIS 173
++S P + + A G P P W+K K+ L
Sbjct: 3 ISSKPVI--VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL---SE 57
Query: 174 ANDLCFLE 181
FLE
Sbjct: 58 DKGGFFLE 65
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 70.4 bits (172), Expect = 4e-14
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 19/120 (15%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
Y C T T ++ P +SE + + + +T+ C
Sbjct: 82 YLCRMKLGETEVTKQE------------HLSVVKPLTLSVHSERSQ-FPDFSVLTVTCTV 128
Query: 365 IGYPIPVYTWSKGEVSIDG---SDGHYKLTLDGVLQIV---GLVRQDAGIYVCVAANGIG 418
+P P W E ++G DG L + L + CV N
Sbjct: 129 NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 47.7 bits (113), Expect = 2e-06
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+ + G T VT ++V P +SE + + + +T+ C +P P
Sbjct: 84 CRMK-LGETEVTKQE-------HLSVVKPLTLSVHSERSQ-FPDFSVLTVTCTVNAFPHP 134
Query: 154 VYTWSKGE 161
W E
Sbjct: 135 HVQWLMPE 142
Score = 37.3 bits (86), Expect = 0.007
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 13/73 (17%)
Query: 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI 417
+ I I +P + + + L + G Y+C G
Sbjct: 43 MHHDVIFIEWPFRGFFD----IHRSANTF--------FLVVTAANISHDGNYLCRMKLG- 89
Query: 418 GDPIRKEFNVIVR 430
+ K+ ++ V
Sbjct: 90 ETEVTKQEHLSVV 102
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 72.5 bits (178), Expect = 4e-14
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD--- 393
P F E + + TL C G+P P+ W + I Y++
Sbjct: 3 MAPHF--KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 394 -GVLQIVGLVRQDAGIYVCVAANGIG 418
L I + DA +Y A N G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGG 86
Score = 67.1 bits (164), Expect = 2e-12
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 296 AKCCPNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEA 352
A +D Y +N + T ++ P I P V A
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVEVP--------AKIHLPKTLEGMG--AVHA 116
Query: 353 EEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG----VLQIVGLVRQDAGI 408
G V+++ G P PV TW KG+ ID ++GHY++ + ++ G+ R+DAG
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLID-NNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 409 YVCVAANGIGDPIRKEFNVIVRG 431
YV A N G +K + V
Sbjct: 176 YVVCAKNRFGI-DQKTVELDVAD 197
Score = 39.4 bits (92), Expect = 0.003
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
A P F E + + TL C G+P P+ W +
Sbjct: 2 AMAPHF--KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK 43
Score = 37.0 bits (86), Expect = 0.011
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFH----NYSEPTVEAEEGNFVTLRCIAIG 149
+A GG+ V+ +A + V P + H V A G V+++ G
Sbjct: 79 VRATNQGGS-VSGTA-------SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 150 YPIPVYTWSKG 160
P PV TW KG
Sbjct: 131 KPDPVITWQKG 141
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 70.3 bits (172), Expect = 4e-14
Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSD 385
S P + P F EP L C A G P PV W + V + +
Sbjct: 95 VSQPGYVGLEGLPYFL--EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
Query: 386 GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
GH L + GL + C A N G + + V
Sbjct: 153 GHGP---QRSLHVPGL--NKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 61.5 bits (149), Expect = 4e-11
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 339 PPRFHNYSEP-TVEAEEGNFVTLRCIA-IGYPIPVYTWSKGEVSID-----------GSD 385
F P + G TLRC + P W + ++ G D
Sbjct: 2 ESPFV--GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 386 GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ L+I L D G Y C+ G + + V + G
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Score = 46.0 bits (109), Expect = 8e-06
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C TFV+ + + P F EP L C A G P
Sbjct: 85 CLVFLGHQTFVSQPG-------YVGLEGLPYFL--EEPEDRTVAANTPFNLSCQAQGPPE 135
Query: 153 PV-YTWSKG 160
PV W +
Sbjct: 136 PVDLLWLQD 144
Score = 29.5 bits (66), Expect = 2.1
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 122 PPRFHNYSEP-TVEAEEGNFVTLRCIA-IGYPIPVYTWSK 159
F P + G TLRC + P W +
Sbjct: 2 ESPFV--GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR 39
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 73.3 bits (180), Expect = 4e-14
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD-GHYKLTLDG--- 394
P+F + + EGN + + C P W + ++ + + + K G
Sbjct: 100 APKFISNQT-IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKM 158
Query: 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+L+I D G Y C A N IG +E+ + +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALAD 194
Score = 65.2 bits (159), Expect = 2e-11
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT---------LDGVLQI 398
E VTL C A G PIP TW + ++G L L I
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 399 VGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ D+G Y C AA+ IG +K + +
Sbjct: 68 KDVKLSDSGRYDCEAASRIGG-HQKSMYLDIE 98
Score = 43.3 bits (102), Expect = 2e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A G S + + P+F + + EGN + + C P
Sbjct: 80 CEAASRIGG-HQKSM-------YLDIEYAPKFISNQT-IYYSWEGNPINISCDVKSNPPA 130
Query: 154 VYTWSKG 160
W +
Sbjct: 131 SIHWRRD 137
Score = 36.7 bits (85), Expect = 0.021
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 131 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
E VTL C A G PIP TW +
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRA 37
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 67.5 bits (165), Expect = 4e-14
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 337 PSPPRFHNYSEP---TVEAEEGNFVTLRCIAIGYPIPVYTWSK--GEVSIDGSDGHYKLT 391
P + N + N V RC A G P+P W K E + G YK+
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 392 LD-GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L + +V D G Y CV N G I +++ V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 99
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 120 ASPPRFHNYSEP---TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
P + N + N V RC A G P+P W K
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK 44
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 67.8 bits (166), Expect = 5e-14
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
P F P + +EG + C G P P +W + D +K+ +
Sbjct: 9 RPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVR-PDSAHKMLVRENGV 65
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIG 418
L I + +DAGIY C+A N G
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAG 90
Score = 37.3 bits (87), Expect = 0.002
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 118 AVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ P F P + +EG + C G P P +W
Sbjct: 5 SSGFRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL 45
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 70.4 bits (172), Expect = 5e-14
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVS----------IDGSDGHYKLTLDGV 395
SEP V E N V L C G+ P W + I S L
Sbjct: 10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ + R+D G Y C+ + G E V +
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGG-NSYGEVKVKL 102
Score = 66.9 bits (163), Expect = 9e-13
Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTL----- 392
PP + P+ A GN L C G P YTW K + + + +
Sbjct: 107 PPSKPTVNIPS-SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 393 ----DGVLQIVGLVRQDAGIYVCVAANGIGDP 420
G L L D G Y C A NG G P
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Score = 42.3 bits (99), Expect = 2e-04
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
SEP V E N V L C G+ P W
Sbjct: 10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKF 40
Score = 40.7 bits (95), Expect = 5e-04
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPI 152
C GG ++ V PP + P+ A GN L C G P
Sbjct: 85 CMVSEEGGNSYGEVKV------KLIVLVPPSKPTVNIPS-SATIGNRAVLTCSEQDGSPP 137
Query: 153 PVYTWSK 159
YTW K
Sbjct: 138 SEYTWFK 144
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 67.0 bits (164), Expect = 6e-14
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 333 TPNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT 391
+ + P F S EG L+C G P+P TW I + +
Sbjct: 5 SSGMEVAPSF--SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG 62
Query: 392 LDGVLQIVGLVRQDAGIYVCVAANGIG 418
L I + +D G Y C+A N +G
Sbjct: 63 -VAELHIQDALPEDHGTYTCLAENALG 88
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 118 AVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG----EVSRKFFLRGFI 172
+ P F S EG L+C G P+P TW + +R G
Sbjct: 7 GMEVAPSF--SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA 64
Query: 173 S 173
Sbjct: 65 E 65
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 69.7 bits (170), Expect = 1e-13
Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 20/136 (14%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D G Y C + ++ PS R E GN
Sbjct: 93 LSDIGTYQCKVKKAPGVANKKFLLTVLVK-----------PSGTRCFV----DGSEEIGN 137
Query: 357 FVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAAN 415
L+C G + W K S V+ + + +G Y C N
Sbjct: 138 DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQN 197
Query: 416 GIGDPIRKEFNVIVRG 431
+G + + V
Sbjct: 198 RVGS-DQCMLRLDVVP 212
Score = 42.0 bits (98), Expect = 2e-04
Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 2/75 (2%)
Query: 103 FVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGE 161
V + + + V P E GN L+C G + W K
Sbjct: 102 KVKKAPGVANKKFLLTVLVKPSGTRCFVD-GSEEIGNDFKLKCEPKEGSLPLQFEWQKLS 160
Query: 162 VSRKFFLRGFISAND 176
S+
Sbjct: 161 DSQTMPTPWLAEMTS 175
Score = 41.2 bits (96), Expect = 4e-04
Identities = 18/117 (15%), Positives = 27/117 (23%), Gaps = 31/117 (26%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVY----TWSKGEVSIDGSD---------------- 385
E +E +G L C P W D
Sbjct: 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYY 65
Query: 386 ----------GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRK-EFNVIVRG 431
+ + D + + L D G Y C G +K V+V+
Sbjct: 66 PDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122
Score = 28.5 bits (63), Expect = 5.1
Identities = 9/86 (10%), Positives = 18/86 (20%), Gaps = 4/86 (4%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRGFISANDLCFLESESGPCT 188
E +E +G L C P ++ D +
Sbjct: 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPL---DI-EWLISPSDNQIVDQVIILYSGDKIY 61
Query: 189 QQEAAWYFDRNSFITMPELTPNTFLF 214
R F + + + +
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASIN 87
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 69.2 bits (169), Expect = 1e-13
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 340 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVS----------IDGSDGHYK 389
+ ++ V+ E + L C G+ P W + S I
Sbjct: 2 GSVYT-AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 390 LTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRK 423
+ + R+D G Y C+ + G +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE 94
Score = 66.9 bits (163), Expect = 8e-13
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTL----- 392
PP S P+ GN L C G P Y+W K +S+ +D
Sbjct: 104 PPSKPTISVPS-SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 393 -----DGVLQIVGLVRQDAGIYVCVAANGIGDP 420
G L + D+G Y C A NG G
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195
Score = 41.1 bits (96), Expect = 4e-04
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 123 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
+ ++ V+ E + L C G+ P W +
Sbjct: 2 GSVYT-AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQ 39
Score = 41.1 bits (96), Expect = 5e-04
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPI 152
C GG + + V PP S P+ GN L C G P
Sbjct: 82 CMVSEEGGQNYGEVSI------HLTVLVPPSKPTISVPS-SVTIGNRAVLTCSEHDGSPP 134
Query: 153 PVYTWSK 159
Y+W K
Sbjct: 135 SEYSWFK 141
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 68.8 bits (168), Expect = 1e-13
Identities = 28/132 (21%), Positives = 37/132 (28%), Gaps = 11/132 (8%)
Query: 296 AKCCPNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIP-------SPPRFHNYSE 347
K D G Y+ T +TV V+ P F Y
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125
Query: 348 PTVEAEEGNFVTLRCIAIGY-PIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
V V L+C W K E I + H L I ++DA
Sbjct: 126 WEVT--GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 183
Query: 407 GIYVCVAANGIG 418
GIY + + G
Sbjct: 184 GIYEVILKDDRG 195
Score = 54.2 bits (130), Expect = 2e-08
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 7/75 (9%)
Query: 350 VEAEEGNFVTL-RCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV-----LQIVGLVR 403
VE E V + E I YK+ +D + + L
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNTGIIEMFMEKLQD 70
Query: 404 QDAGIYVCVAANGIG 418
+D G Y +G
Sbjct: 71 EDEGTYTFQLQDGKA 85
Score = 35.7 bits (82), Expect = 0.023
Identities = 12/77 (15%), Positives = 15/77 (19%), Gaps = 3/77 (3%)
Query: 87 NFMTEEACQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCI 146
+ G F + P F Y V V L+C
Sbjct: 82 DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT--GECNVLLKCK 139
Query: 147 AIGY-PIPVYTWSKGEV 162
W K E
Sbjct: 140 VANIKKETHIVWYKDER 156
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 68.3 bits (167), Expect = 2e-13
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI----DGSDGHYKLTLD 393
+ P + EG + C ++GYP P + W K E + S G + +
Sbjct: 91 AAPDITGHKRS-ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 394 G---VLQIVGL-VRQDAGIYVCVAANGIG 418
L IV L + +D G Y C A N IG
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIG 178
Score = 63.3 bits (154), Expect = 9e-12
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYT--WSKGEVSIDGSDGHYKLTLDGV 395
+ PR E + + VTL+C + W+K V + + + +
Sbjct: 2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS---NME 57
Query: 396 LQIVGLVRQDAGIYVCVAANG 416
+I +D+G Y CV
Sbjct: 58 YRINKPRAEDSGEYHCVYHFV 78
Score = 45.2 bits (107), Expect = 1e-05
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C ++A I V + P + EG + C ++GYP P
Sbjct: 73 CVYHFVSA--PKANA-------TIEVKAAPDITGHKRS-ENKNEGQDAMMYCKSVGYPHP 122
Query: 154 VYTWSK 159
+ W K
Sbjct: 123 EWMWRK 128
Score = 36.4 bits (84), Expect = 0.012
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYT--WSKG 160
+ PR E + + VTL+C + W+K
Sbjct: 2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN 42
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 65.4 bits (160), Expect = 2e-13
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
P+ + +G+ R +G P P W K V I+ SD Y +
Sbjct: 4 EAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 395 VLQIVGLVRQDAGIYVCVAANGIG 418
L I + +D+ + A N G
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAG 86
Score = 35.7 bits (83), Expect = 0.006
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV----SRKFFLRGFISAND 176
P+ + +G+ R +G P P W K V S + + + ++
Sbjct: 4 EAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW--YWPEDN 60
Query: 177 LCFLE 181
+C L
Sbjct: 61 VCELV 65
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 69.2 bits (169), Expect = 5e-13
Identities = 25/144 (17%), Positives = 39/144 (27%), Gaps = 12/144 (8%)
Query: 297 KCCPNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTP-----YTPNIPSPPRFHNYSEP 348
K D G Y+ + +T + P F Y
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 349 TVEAEEGNFVTLRCIAIGYPIPVY-TWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAG 407
V V L+C + W K E I + H L I ++DAG
Sbjct: 232 EVT--GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 289
Query: 408 IYVCVAANGIGDPIRKEFNVIVRG 431
IY + + G + ++
Sbjct: 290 IYEVILKDDRGK-DKSRLKLVDEA 312
Score = 68.9 bits (168), Expect = 7e-13
Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 11/130 (8%)
Query: 297 KCCPNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAE 353
+D G YSC ++ I ++ + + P E
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEH--KFPTVPVKSELAVEILE 121
Query: 354 EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-----VLQIVGLVRQDAGI 408
+G + E I YK+ +D + + L +D G
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 409 YVCVAANGIG 418
Y +G
Sbjct: 181 YTFQLQDGKA 190
Score = 63.1 bits (153), Expect = 6e-11
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---V 395
P V+ + + C P ++WSK VS + ++ G
Sbjct: 3 DPFTKE-VVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTE-DSPRLEVESKGNKTK 59
Query: 396 LQIVGLVRQDAGIYVCVAANGIG 418
+ L D GIY C + G
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDG 82
Score = 35.4 bits (81), Expect = 0.050
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 4/72 (5%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVA----SPPRFHNYSEPTVEAEEGNFVTLRCIAIG 149
C G + ++L+ +A++ P E+G
Sbjct: 75 CDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKL 134
Query: 150 YPIPVYTWSKGE 161
+ E
Sbjct: 135 SGNAKVNYIFNE 146
Score = 35.0 bits (80), Expect = 0.060
Identities = 13/89 (14%), Positives = 18/89 (20%), Gaps = 7/89 (7%)
Query: 87 NFMTEEACQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCI 146
+ G F + P F Y V V L+C
Sbjct: 187 DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT--GECNVLLKCK 244
Query: 147 AIGYPIPVY-TWSKGEV----SRKFFLRG 170
+ W K E K +
Sbjct: 245 VANIKKETHIVWYKDEREISVDEKHDFKD 273
Score = 34.2 bits (78), Expect = 0.11
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
P V+ + + C P ++WSK V
Sbjct: 1 GIDPFTKE-VVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYV 41
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 64.9 bits (158), Expect = 6e-13
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVY-TWSKGEVSID-GSDGHYKLT----- 391
PP S T A G ++C P P WS E ++ G+ G Y +
Sbjct: 14 PPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 392 --LDGVLQIVGLVRQD-AGIYVCVAANGIGDPIRKEFNVIVRGN 432
+ L I +VR D IY C A N G + + +G+
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGS 114
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 116 RIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVY-TWSKGE 161
+ V PP S T A G ++C P P WS E
Sbjct: 8 TLTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKE 52
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 64.9 bits (158), Expect = 1e-12
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
S N + + P +E EG+ C
Sbjct: 15 TSPINANKVENEDAFLEEVAEEKPHVK--PYFTKTIL-------DMEVVEGSAARFDCKV 65
Query: 365 IGYPIPVYTWSKGEVSIDGSDGHYKLTLDG----VLQIVGLVRQDAGIYVCVAANGIG 418
GYP P W K + + H+++ D L I + D Y C A N +G
Sbjct: 66 EGYPDPEVMWFKDDNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 97 RCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVY 155
V + A + P F +E EG+ C GYP P
Sbjct: 16 SPINANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMEVVEGSAARFDCKVEGYPDPEV 73
Query: 156 TWSK 159
W K
Sbjct: 74 MWFK 77
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 67.8 bits (165), Expect = 1e-12
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 6/109 (5%)
Query: 322 PAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVS 380
++ + PP N TL C A P P Y WS
Sbjct: 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP 258
Query: 381 IDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ + + L I + + +C N +G + E V V
Sbjct: 259 LP----PFAVAQGAQLLIRPVDKPINTTLICNVTNALGA-RQAELTVQV 302
Score = 51.6 bits (123), Expect = 2e-07
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 329 STPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGH 387
S + + P+ V+ RC++ G P TW + +
Sbjct: 107 SVDIWLRVLAKPQNT-AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV 165
Query: 388 YK-----LTLDGVLQIVGLVRQDAGIYVCVAAN-GIGDPIRKEFNVIVR 430
+T+ + +V + D C + P N+ V
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214
Score = 43.2 bits (101), Expect = 2e-04
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPVY-----TWSKGEVSIDGSDGHYKL------------ 390
V G+ VTL C + V TW++ S + H
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 391 --------TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ L++ GL +D G Y C+ + + V
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 38.5 bits (89), Expect = 0.004
Identities = 16/57 (28%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 105 TSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKG 160
S P L + V PP N TL C A P P Y WS
Sbjct: 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT 255
Score = 34.7 bits (79), Expect = 0.066
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 103 FVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKG 160
FVT ++ + V + P+ V+ RC++ G P TW
Sbjct: 98 FVTFPQGSRSVDIWLRVLAKPQNT-AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD 155
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 63.2 bits (154), Expect = 1e-12
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHY-------KLT 391
P + + G P P W ++ S
Sbjct: 4 APTI----TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 392 LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
G LQ+ + G Y +A N G K+ +
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHF 96
Score = 37.0 bits (86), Expect = 0.002
Identities = 6/41 (14%), Positives = 8/41 (19%), Gaps = 4/41 (9%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
V P + + G P P W
Sbjct: 1 VHFAPTI----TFLESPTSDHHWCIPFTVKGNPKPALQWFY 37
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 69.0 bits (168), Expect = 2e-12
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%)
Query: 305 YSCSNL-FDITTTTTTVSPAYPVYTSTPYTPNI---PSPPRFHNYSEPTVEAEEGNFVTL 360
C + ++ S +YP+ + +P P Y VE + +TL
Sbjct: 10 IKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITL 68
Query: 361 RCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV--LQIVGLVRQDAGIYVCVAANGIG 418
+ + W S++ H+ L GV + I+ + AG Y+ +
Sbjct: 69 QVLVDAPGNISCLWVFKHSSLNCQP-HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127
Query: 419 DPIRKEFNVIVR 430
+ F V +R
Sbjct: 128 N-YTILFTVSIR 138
Score = 68.2 bits (166), Expect = 3e-12
Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 22/134 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
ND G Y+C S + T V + T++ E ++
Sbjct: 299 RNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSS----------------EDYEIDQYE 342
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
YP TW+ S L + + G Y+ A N
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRKSF--PCEQKGLDNGYSISKFCNHKHQPGEYIFHAEND 400
Query: 417 IGDPIRKEFNVIVR 430
K F + +R
Sbjct: 401 DAQ-FTKMFTLNIR 413
Score = 59.7 bits (144), Expect = 2e-09
Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 327 YTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGY-PIPVYTWSKGEVSIDGSD 385
+ +T ++ P+ + P + + G + +RC A+ TW +++ +
Sbjct: 217 ECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273
Query: 386 --------GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ + + + R D G Y C ++ ++ +G
Sbjct: 274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA--LVTIVEKG 325
Score = 56.6 bits (136), Expect = 1e-08
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
+ +T +I + + + E N L CI+ P P+ W + +
Sbjct: 129 YTILFTVSIRNTLLYTLRRPYFRKME--NQDALVCISESVPEPIVEWVLCDSQGESCKEE 186
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ +++ C A N +G + F + +
Sbjct: 187 SPAVVKKEEKVLH--ELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Score = 52.8 bits (126), Expect = 2e-07
Identities = 22/148 (14%), Positives = 34/148 (22%), Gaps = 40/148 (27%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+ G Y N T T+ NI P+ E +
Sbjct: 387 KHQPGEYIFHAENDDAQFTKMFTL--------------NIRRKPQVL---------AEAS 423
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLT-------------LDGVLQIVGLVR 403
C + GYP+P +TW K +
Sbjct: 424 ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483
Query: 404 QDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ C A N +G + + G
Sbjct: 484 IKGFLVKCCAYNSLG-TSCETILLNSPG 510
Score = 45.1 bits (106), Expect = 6e-05
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 100 GGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
++ S +P+ L + S + VE + +TL+ + W
Sbjct: 27 SSSYPMVSESPEDLGCALRPQSSGTVY--EAAAVEVDVSASITLQVLVDAPGNISCLWVF 84
Score = 38.9 bits (90), Expect = 0.004
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGY-PI 152
C AR G T I + P+ + P + + G + +RC A+
Sbjct: 208 CCARNELGRECTRLF-------TIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 153 PVYTWSKG 160
TW
Sbjct: 258 FGLTWELE 265
Score = 38.9 bits (90), Expect = 0.005
Identities = 5/46 (10%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 116 RIAVASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ + + + E ++ YP TW+
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS 363
Score = 38.5 bits (89), Expect = 0.006
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 103 FVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
F+ S A + +++ + + + E N L CI+ P P+ W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME--NQDALVCISESVPEPIVEWVL 175
Score = 35.8 bits (82), Expect = 0.040
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
+ P+ E + C + GYP+P +TW K
Sbjct: 412 IRRKPQVL---------AEASASQASCFSDGYPLPSWTWKKCS 445
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 62.7 bits (153), Expect = 2e-12
Identities = 15/86 (17%), Positives = 20/86 (23%), Gaps = 5/86 (5%)
Query: 336 IPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG- 394
+ PR G P W V + T
Sbjct: 5 LDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ-ESSKIHYTNTSG 62
Query: 395 --VLQIVGLVRQDAGIYVCVAANGIG 418
L+I+ D+G Y V N G
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKG 88
Score = 36.1 bits (84), Expect = 0.004
Identities = 9/70 (12%), Positives = 13/70 (18%), Gaps = 9/70 (12%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRGFISANDLC 178
+ PR G P W V + +
Sbjct: 5 LDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEVKWYHNGVE--------LQESSKI 55
Query: 179 FLESESGPCT 188
+ SG T
Sbjct: 56 HYTNTSGVLT 65
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 68.5 bits (167), Expect = 2e-12
Identities = 30/142 (21%), Positives = 44/142 (30%), Gaps = 24/142 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
ND G + C +N F TTT+ V I P + TV +G
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLE----VVDK----GFINIFPMIN----TTVFVNDGE 329
Query: 357 FVTLRCIAIGYPIPV-YTWSKGEVSI-------DGSDGHYKLTLDGVLQIVGLVRQDAGI 408
V L +P P W + S+ + L + L + G
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389
Query: 409 YVCVAANGIGDPIRKEFNVIVR 430
Y + +N + FNV V
Sbjct: 390 YTFLVSNSDVN-AAIAFNVYVN 410
Score = 63.5 bits (154), Expect = 8e-11
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 332 YTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVY-TWSKGEVSIDGSD----- 385
P + P S+ + EG T+ C VY TW + +
Sbjct: 204 VRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSW 262
Query: 386 --GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
G + L I D+G+++C A N G + V
Sbjct: 263 HHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVV 308
Score = 58.9 bits (142), Expect = 3e-09
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
+ G Y+C+N ++ + V+ P + + +E N
Sbjct: 89 ATNTGKYTCTNKHGLSNSIY-------VFVRDPAKLFLVDRS---------LYGKEDNDT 132
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVR-QDAGIYVCVAANGI 417
+RC + Y+ + D + + I + R C
Sbjct: 133 LVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG 192
Query: 418 GDPIRKEFNVIVR 430
+ ++F + VR
Sbjct: 193 KSVLSEKFILKVR 205
Score = 57.8 bits (139), Expect = 6e-09
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 22/112 (19%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD--------- 385
+ + P + + L+C+A G+P P W +
Sbjct: 408 YVNTKPEI-------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQ 460
Query: 386 -----GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGN 432
G L I + G C A N +G FN +GN
Sbjct: 461 TLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAFKGN 511
Score = 52.0 bits (124), Expect = 3e-07
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
+ C L + T + P+ +P PSPP + + + G+ + L C
Sbjct: 10 FLCVLLLLLRVQTGSSQPSV--------SPGEPSPPSI-HPGKSDLIVRVGDEIRLLCTD 60
Query: 365 IGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
G+ W+ + + + G Y C +G+
Sbjct: 61 PGFV----KWTFEILDETNENKQ------NEWITEKAEATNTGKYTCTNKHGLS 104
Score = 40.0 bits (93), Expect = 0.002
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C G + ++ L+ R A + P S+ + EG T+ C
Sbjct: 186 CSVDQEGKSVLSEKF---ILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSS 241
Query: 154 VY-TWSKG 160
VY TW +
Sbjct: 242 VYSTWKRE 249
Score = 38.9 bits (90), Expect = 0.005
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 104 VTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
V++S + + V + P + + L+C+A G+P P W
Sbjct: 394 VSNSDVNAAIAFNVYVNTKPEI-------LTYDRLVNGMLQCVAAGFPEPTIDWYF 442
Score = 37.0 bits (85), Expect = 0.016
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 104 VTSSAAPDQLENRIAVASPPRFHNYSE--PTVEAEEGNFVTLRCIAIGYPIPV-YTWSK 159
++ + + V + + TV +G V L +P P W
Sbjct: 292 ANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY 350
Score = 34.6 bits (79), Expect = 0.086
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 114 ENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
+ V P + + +E N +RC + Y+ +
Sbjct: 106 SIYVFVRDPAKLFLVDRS-LYGKEDNDTLVRCPLTDPEVTNYSLKGCQ 152
Score = 33.5 bits (76), Expect = 0.20
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 98 CAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTW 157
C + Q SPP + + + G+ + L C G+ W
Sbjct: 12 CVLLLLLRVQTGSSQPSVSPGEPSPPSI-HPGKSDLIVRVGDEIRLLCTDPGFV----KW 66
Query: 158 SK 159
+
Sbjct: 67 TF 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 67.8 bits (166), Expect = 3e-12
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK--GEVSIDGSDGHYKLTLDGV 395
R + V +EG+ V C A G P P W + S+G + DG
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 396 LQIVGLVRQDAGIYVCVAANGIG 418
L++ QD G Y+C+AAN G
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGG 465
Score = 33.9 bits (78), Expect = 0.14
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
R + V +EG+ V C A G P P W
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS 421
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 66.3 bits (161), Expect = 4e-12
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 299 CPNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNF 357
G Y+CSN +T++ V+ P + P + +E +
Sbjct: 65 EATRTGTYTCSNSNGLTSSIY-------VFVRDPAKLFLVGLP---------LFGKEDSD 108
Query: 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQ-DAGIYVCVAANG 416
+RC + Y+ + + +D + + I + R C A
Sbjct: 109 ALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 417 IGDPIRKEFNVIVRG 431
+F + VR
Sbjct: 169 GTWLHSDKFTLKVRE 183
Score = 55.9 bits (134), Expect = 1e-08
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 12/108 (11%)
Query: 332 YTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSID-------- 382
I + P + ++G+ T+ C V W K
Sbjct: 181 VREAIKAIPVVSVPETSHL-LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 383 -GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
G + L I D+G+++C A N G + V
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS-ANVTTTLKV 286
Score = 45.9 bits (108), Expect = 2e-05
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 329 STPY-TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
S P +P PSPP + ++ + E G+ ++L CI V W+
Sbjct: 1 SQPSASPGEPSPPSI-HPAQSELIVEAGDTLSLTCIDPD---FV-RWTF-----KTYFNE 50
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
G Y C +NG+
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLT 81
Score = 39.7 bits (92), Expect = 0.002
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 117 IAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ V P + P +E + +RC + Y+ +
Sbjct: 86 VFVRDPAKLFLVGLPLF-GKEDSDALVRCPLTDPQVSQYSLIE 127
Score = 36.2 bits (83), Expect = 0.023
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C A+ G + L+ R A+ + P + ++G+ T+ C
Sbjct: 163 CAAQRDGTWLHSDKF---TLKVREAIKAIPVVSVPETSHL-LKKGDTFTVVCTIKDVSTS 218
Query: 154 V-YTWSK 159
V W K
Sbjct: 219 VNSMWLK 225
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 65.3 bits (158), Expect = 5e-12
Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 29/154 (18%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
P D G Y C T + V T +TP H + V+ +EGN +
Sbjct: 99 PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP----SNNVHVSTAEVVQVDEGNDI 154
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDGSD-----------------------GHYKLTLDGV 395
T+ C TW G + + G +
Sbjct: 155 TMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARN 214
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L I DAG C A G G + + + +
Sbjct: 215 LVIRAAKITDAGRVWCELATGQG-ELDADRSSTI 247
Score = 43.4 bits (101), Expect = 9e-05
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 94 CQA-RCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI 152
CQ + + T A L+ S + +E V+ +EGN +T+ C
Sbjct: 107 CQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAE-VVQVDEGNDITMTCPCTDCAN 165
Query: 153 PVYTWSKG 160
TW G
Sbjct: 166 ANVTWYTG 173
Score = 41.4 bits (96), Expect = 4e-04
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 34/106 (32%)
Query: 347 EPTVEAEEGNFVTLRC---IAIGYPIPVYTWSKGEVSIDGS---DGHYKLTLDGV----- 395
VE G V L C +A PV +W KG + G+Y +G+
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 396 -----------------------LQIVGLVRQDAGIYVCVAANGIG 418
L++ + QD G Y C A
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
Score = 33.7 bits (76), Expect = 0.12
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 130 EPTVEAEEGNFVTLRC---IAIGYPIPVYTWSKG 160
VE G V L C +A PV +W KG
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKG 42
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 61.8 bits (150), Expect = 6e-12
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHY------ 388
+ PPR + EP + E + + G P P W + S +
Sbjct: 4 TVYYPPRVVSLEEPELRLE----HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 389 KLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+G L + G Y +A N +G + N
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHF 99
Score = 36.3 bits (84), Expect = 0.005
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
V PPR + EP + E + + G P P W
Sbjct: 5 VYYPPRVVSLEEPELRLE----HCIEFVVRGNPPPTLHWLH 41
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 64.1 bits (156), Expect = 7e-12
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSID-GSDGHYKLTLDG--- 394
P+ V EGN V + C YP +W + + + + K+
Sbjct: 19 APKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 395 VLQIVGLVRQDAGIYVCVAANGIG 418
L++ D G Y C A N IG
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIG 100
Score = 37.5 bits (87), Expect = 0.006
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 105 TSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
T +AA L R + P+ V EGN V + C YP +W +
Sbjct: 2 TYAAASSALVPRGSHMYAPKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRD 55
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 65.1 bits (158), Expect = 7e-12
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 13/107 (12%)
Query: 326 VYTSTPYTPNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS 384
++ + + PR P E + T C A G P+P K DG+
Sbjct: 170 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-----DGT 224
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G V R G Y+C A + G+ + +E V V
Sbjct: 225 ----FPLPIGESVTVT--RDLEGTYLCRARSTQGE-VTREVTVNVLS 264
Score = 48.9 bits (116), Expect = 2e-06
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPI 152
C A + +L V PR P E + T C A G P+
Sbjct: 159 CSATLEVAGQLIHKNQTRELR----VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 214
Query: 153 PVYTWSK 159
P K
Sbjct: 215 PELKCLK 221
Score = 39.3 bits (91), Expect = 0.002
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 24/130 (18%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
+C+ + + T T I S P + E EG VT++C A
Sbjct: 76 LTCAVILGNQSQETLQ------------TVTIYSFPAPNVILTKP-EVSEGTEVTVKCEA 122
Query: 365 IGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI-GDPIRK 423
+P T + G L + + + C A + G I K
Sbjct: 123 --HPRAKVTLNGVPAQPLGPRAQ--------LLLKATPEDNGRSFSCSATLEVAGQLIHK 172
Query: 424 EFNVIVRGNY 433
+R Y
Sbjct: 173 NQTRELRVLY 182
Score = 34.6 bits (79), Expect = 0.074
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVYT--WSKGEVSIDGSDGHYKLTLD 393
+PP+ + E T+ C G +P+ + G+ ++ + + +
Sbjct: 4 ATPPQLVSPRV----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 59
Query: 394 GVLQI-VGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ V + C G V +
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTI 95
Score = 31.6 bits (71), Expect = 0.69
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 9/70 (12%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C + T + + S P + E EG VT++C A
Sbjct: 78 CAVILGNQSQETLQ--------TVTIYSFPAPNVILTKP-EVSEGTEVTVKCEAHPRAKV 128
Query: 154 VYTWSKGEVS 163
+
Sbjct: 129 TLNGVPAQPL 138
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 63.5 bits (154), Expect = 1e-11
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
T ++ P +E + VTL C++ W S+ ++
Sbjct: 98 TQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE-R 155
Query: 388 YKLTLDG-VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L+ + +L+I + R+DAG Y C +N + + +
Sbjct: 156 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 52.0 bits (124), Expect = 1e-07
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 19/102 (18%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD------------------GH 387
+ P + E N V L + + + W KG + + G
Sbjct: 6 AVPP-QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ +G L + +D G+Y + + V
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
Score = 33.5 bits (76), Expect = 0.13
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
+ P + E N V L + + + W KG
Sbjct: 6 AVPP-QVAEDNNVLLLVHNLPLALGAFAWYKGN 37
Score = 30.4 bits (68), Expect = 1.4
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 8/83 (9%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
++ R V P +E + VTL C++
Sbjct: 88 LDMTDENYRRTQATV-------RFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-A 139
Query: 154 VYTWSKGEVSRKFFLRGFISAND 176
W S + R +S N+
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQNN 162
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 60.5 bits (147), Expect = 1e-11
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
S F +P + ++G V + P W K I S Y G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPST-KYIFEHKGCQR 63
Query: 395 VLQIVGLVRQDAGIYVCVAAN 415
+L I D Y A +
Sbjct: 64 ILFINNCQMTDDSEYYVTAGD 84
Score = 36.6 bits (85), Expect = 0.003
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+S F +P + ++G V + P W K
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKN 44
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 62.7 bits (152), Expect = 1e-11
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 333 TPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSID-----GSDG 386
+ PPR EG L C + P + W K S D GS+
Sbjct: 77 NIQLHGPPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES 135
Query: 387 HYKLTLDG---VLQIVGLVRQ-DAGIYVCVAANGIGDPIRKEFNVIVR 430
+ ++ L I L + D G Y C + G + + VR
Sbjct: 136 RFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVR 182
Score = 49.3 bits (117), Expect = 5e-07
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 349 TVEAEEGNFVTLRCIAIGYPIPV--YTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
T + G+ + L C V + W KG V + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-----LPGQKTEFKVDSDDQW 61
Query: 407 GIYVCVAAN 415
G Y CV
Sbjct: 62 GEYSCVFLP 70
Score = 38.9 bits (90), Expect = 0.002
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 116 RIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGE 161
I + PPR EG L C + P + W K
Sbjct: 77 NIQLHGPPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKIT 122
Score = 29.2 bits (65), Expect = 2.5
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 132 TVEAEEGNFVTLRCIAIGYPIPV--YTWSKG 160
T + G+ + L C V + W KG
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKG 37
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 60.1 bits (146), Expect = 2e-11
Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
F EP + +G+ + L + W K I S Y G
Sbjct: 13 KKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L I D Y CV + + V+
Sbjct: 72 RTLTISQCSLADDAAYQCVVGG-----EKCSTELFVK 103
Score = 32.7 bits (75), Expect = 0.066
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 116 RIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ F EP + +G+ + L + W K
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLK 51
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 60.0 bits (146), Expect = 2e-11
Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---V 395
P E G V LRC PV W K +I S Y + +G +
Sbjct: 8 PAAIIKPLED-QWVAPGEDVELRCELSRAGTPV-HWLKDRKAIRKSQ-KYDVVCEGTMAM 64
Query: 396 LQIVGLVRQDAGIYVCVAANGIG 418
L I G +DAG Y C
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKS 87
Score = 34.6 bits (80), Expect = 0.018
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 120 ASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV----SRKFFLRGFISAN 175
+ P E G V LRC PV W K S+K+ +
Sbjct: 6 SGPAAIIKPLED-QWVAPGEDVELRCELSRAGTPV-HWLKDRKAIRKSQKYD---VVCEG 60
Query: 176 DLCFLE 181
+ L
Sbjct: 61 TMAMLV 66
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 58.9 bits (143), Expect = 3e-11
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 350 VEAEEGNFVTLRCIAIGYPIPVY-TWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQD 405
EEG V C Y TW G ++ S+ Y++T + +L + + + D
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE-KYEITYEDGVAILYVKDITKLD 69
Query: 406 AGIYVCVAANGIG 418
G Y C N G
Sbjct: 70 DGTYRCKVVNDYG 82
Score = 30.4 bits (69), Expect = 0.47
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 8/54 (14%)
Query: 133 VEAEEGNFVTLRCIAIGYPIPVY-TWSKGEV----SRKFFLRGFISANDLCFLE 181
EEG V C Y TW G S K+ + + L
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY---EITYEDGVAILY 61
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 59.3 bits (144), Expect = 4e-11
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 337 PSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG- 394
+ V+ +EG+ T RC W + + ++ + G
Sbjct: 11 GRRVHII--EDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG 68
Query: 395 --VLQIVGLVRQDAGIYVCVA 413
VL + L +D+G A
Sbjct: 69 YHVLTLRQLALKDSGTIYFEA 89
Score = 35.1 bits (81), Expect = 0.012
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRGFISANDLC 178
+ V+ +EG+ T RC W + + AN+L
Sbjct: 11 GRRVHII--EDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTP--------LHANELN 60
Query: 179 FLESESG 185
++++ G
Sbjct: 61 EIDAQPG 67
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 61.0 bits (148), Expect = 5e-11
Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
ND G Y+C T T++S PV+ + + + P +E +EG +
Sbjct: 60 NNDSGEYTC------QTGQTSLSD--PVHLTVLFEWLVLQTP--------HLEFQEGETI 103
Query: 359 TLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI 417
LRC + P+ T+ + S S D I +G Y C G
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFSHL------DPTFSIPQANHSHSGDYHCTGNIGY 157
Query: 418 GDPIRKEFNVIVR 430
K + V+
Sbjct: 158 TLFSSKPVTITVQ 170
Score = 45.2 bits (107), Expect = 1e-05
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 11/88 (12%)
Query: 338 SPPRFH-NYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDGHYKLTLDGV 395
+PP+ P + + + VTL C P W I
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-------- 52
Query: 396 LQIVGLVRQDAGIYVCVAANGIG-DPIR 422
D+G Y C DP+
Sbjct: 53 SYRFKANNNDSGEYTCQTGQTSLSDPVH 80
Score = 35.9 bits (83), Expect = 0.014
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 91 EEACQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-G 149
++ + C G S + V P +E +EG + LRC +
Sbjct: 61 NDSGEYTCQTGQTSLSDPV------HLTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKD 112
Query: 150 YPIPVYTWSKGEVSRKFFLRG 170
P+ T+ + S+KF
Sbjct: 113 KPLVKVTFFQNGKSQKFSHLD 133
Score = 29.0 bits (65), Expect = 3.3
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 121 SPPRFH-NYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKG 160
+PP+ P + + + VTL C P W
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN 42
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 60.7 bits (147), Expect = 5e-11
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 327 YTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSD 385
S P + S S V EG + LRC + + + K ++
Sbjct: 74 NESEPVYLEVFSDWLLLQASAEVVM--EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY 131
Query: 386 GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ + I +D+G Y C D + N+ V
Sbjct: 132 E------NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 47.2 bits (112), Expect = 3e-06
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 348 PTVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
P +G VTL C + + W +G + L IV +D+
Sbjct: 12 PWNRIFKGENVTLTCNGNNFFEVSSTKWFH--------NGSLSEETNSSLNIVNAKFEDS 63
Query: 407 GIYVCVAANGIG-DPIR 422
G Y C +P+
Sbjct: 64 GEYKCQHQQVNESEPVY 80
Score = 33.7 bits (77), Expect = 0.085
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 97 RCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVY 155
+C S + V S S V EG + LRC + +
Sbjct: 67 KCQHQQVNESEPV------YLEVFSDWLLLQASAEVVM--EGQPLFLRCHGWRNWDVYKV 118
Query: 156 TWSKGEVSRKFFLRG 170
+ K + K++
Sbjct: 119 IYYKDGEALKYWYEN 133
Score = 27.9 bits (62), Expect = 7.4
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 131 PTVEAEEGNFVTLRCIAIG-YPIPVYTWSKG 160
P +G VTL C + + W
Sbjct: 12 PWNRIFKGENVTLTCNGNNFFEVSSTKWFHN 42
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 63.2 bits (153), Expect = 7e-11
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDG 386
T N+ P + V L C A P Y W+ S+
Sbjct: 220 FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL---PK 276
Query: 387 HYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ + + AG Y+C A N IG + V +
Sbjct: 277 GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQVEVNIT 319
Score = 46.7 bits (110), Expect = 1e-05
Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 335 NIPSPPRFHNYSEPTV----EAEEGNFVTLRCIAI-GYPIPVYTWSKG----EVSIDGSD 385
+ + P V + ++ + C + G P V +W + +
Sbjct: 126 TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN 185
Query: 386 GHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ +T+ ++V C+ + ++ + V+
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMD-RFKESLTLNVQ 229
Score = 44.7 bits (105), Expect = 5e-05
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 24/119 (20%)
Query: 335 NIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYP--------------------IPVYTW 374
+ P ++ G V L C + +Y
Sbjct: 9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNP 68
Query: 375 SKGEVSIDGSDGHYKLT----LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
S G + + DG +++ L +D G+Y+C A + N+ V
Sbjct: 69 SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
Score = 42.8 bits (100), Expect = 2e-04
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 104 VTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV-YTWSKG 160
V + + V P + V L C A P Y W+
Sbjct: 213 VNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTL 270
Score = 28.9 bits (64), Expect = 4.5
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVY----TWSK 159
+ P ++ G V L C V TW K
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK 54
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 62.8 bits (152), Expect = 8e-11
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
G Y+C S + T V N P+ P + + T+E + G+
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITR-----VIEFITLEENKPTRPVIVSPANETMEVDLGS 225
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSD--------------GHYKLTLDGVLQIVGLV 402
+ L C G + W ID D + TL VL I +
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 403 RQD-AGIYVCVAANGIG 418
+ + C A N G
Sbjct: 286 SRFYKHPFTCFAKNTHG 302
Score = 57.8 bits (139), Expect = 3e-09
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 5/118 (4%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPV-YTWSK--GEVSIDGSDGHYKLTLDG 394
+ E + + C TW K + +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNYEQWYYDRDTDSCQPFQYGG 452
L V +D+G Y CV N +R + + N Y+ Q G
Sbjct: 63 KLWFVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
Score = 57.0 bits (137), Expect = 6e-09
Identities = 21/144 (14%), Positives = 34/144 (23%), Gaps = 24/144 (16%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y C N + + P +
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAK----FVENEPNLCYNAQAIF-------KQKLPVAG 119
Query: 357 FVTLRC------IAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYV 410
L C +P W K + + H+ L ++ + + G Y
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-KDRLIVMNVAEKHRGNYT 178
Query: 411 CVAAN---GIGDPIRKEFNVIVRG 431
C A+ G PI + I
Sbjct: 179 CHASYTYLGKQYPITRVIEFITLE 202
Score = 45.1 bits (106), Expect = 3e-05
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 94 CQAR-CAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI 152
C A G + + + + P + + T+E + G+ + L C G
Sbjct: 179 CHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS 238
Query: 153 PVYTWSKGE 161
+ W
Sbjct: 239 DIAYWKWNG 247
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 62.2 bits (150), Expect = 1e-10
Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 18/143 (12%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
D G Y C + + V T RF +P + G
Sbjct: 191 LEDSGRYDCY----VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPA 246
Query: 359 TLRCIAIGYPIP----VYTWSKGEVSIDGSDGHYKLTL-------DGVLQIVGLVRQDAG 407
+ C A+ + + W I G D L + L + + G
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306
Query: 408 -IYVCVAANGIGDPIRKEFNVIV 429
Y C N D V++
Sbjct: 307 NTYTCRGHNYYFD-KTLTTTVVL 328
Score = 54.5 bits (130), Expect = 5e-08
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRC-IAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
PP + + + + L C I TW K + Y + L
Sbjct: 128 PPSCIPETYE-LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-GQNLI 185
Query: 398 IVGLVRQDAGIYVCVAANGIG 418
I +D+G Y C
Sbjct: 186 IHNPELEDSGRYDCYVHYDDV 206
Score = 51.8 bits (123), Expect = 3e-07
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 7/111 (6%)
Query: 327 YTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG 386
+ P + P A G + +C I + + ++ + ++
Sbjct: 16 RDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKI 75
Query: 387 HYKL------TLDGVLQIVGLVRQDAG-IYVCVAANGIGDPIRKEFNVIVR 430
+G L I D+ Y+C GD ++ +R
Sbjct: 76 GKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126
Score = 40.6 bits (94), Expect = 0.001
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 4/70 (5%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C + + RF +P + G + C A+ +
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258
Query: 154 ----VYTWSK 159
+ W
Sbjct: 259 VDDVLIDWEN 268
Score = 34.4 bits (78), Expect = 0.10
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 9/67 (13%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRC-IAIGYPI 152
C G V R + PP + + + + L C I
Sbjct: 107 CTVTTKNGDCVQGIV-------RSHIRKPPSCIPETYE-LGTHDKYGIDLYCGILYAKHY 158
Query: 153 PVYTWSK 159
TW K
Sbjct: 159 NNITWYK 165
Score = 28.3 bits (62), Expect = 9.1
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 111 DQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
D L + + P A G + +C I + + ++
Sbjct: 17 DTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYND 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 62.2 bits (151), Expect = 2e-10
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 343 HNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWS-KGEVSIDGSDGHYKLTLDGVLQIVGL 401
Y E EA G+ +T+RC + S E + +G L +
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 308
Query: 402 VRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+D G+Y C A + +V ++
Sbjct: 309 QVEDGGVYTCYAMGETF---NETLSVELK 334
Score = 32.5 bits (74), Expect = 0.37
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 113 LENRIAVASPPRFHN-----------YSEPTVEAEEGNFVTLRCIAIGYPIPVYTWS 158
+ + + HN Y E EA G+ +T+RC + S
Sbjct: 225 FQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVS 281
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 56.6 bits (137), Expect = 3e-10
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
P RF +E EG TLRC+ PV W G + D Y L +G
Sbjct: 8 PVRFQ--EALKDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGD-KYSLRQEGAML 63
Query: 395 VLQIVGLVRQDAGIYVCVA 413
L + L QD+G Y C
Sbjct: 64 ELVVRNLRPQDSGRYSCSF 82
Score = 34.6 bits (80), Expect = 0.018
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ P RF +E EG TLRC+ PV W G
Sbjct: 6 SGPVRFQ--EALKDLEVLEGGAATLRCVLSSVAAPV-KWCYG 44
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 60.5 bits (146), Expect = 3e-10
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 327 YTSTPYTPNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSK-------GE 378
S Y + +G +TL CI IG + + W+
Sbjct: 167 VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226
Query: 379 VSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIR-KEFNVIV 429
+ + +L I +D+G Y C + D K N+ V
Sbjct: 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 57.8 bits (139), Expect = 2e-09
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
D G Y C++ T Y ++ P +P+ E + E +
Sbjct: 60 GLDTGEYFCTHNDSRGLETDERKRLY-IFVPDPTVGFLPNDA-----EELFIFLTEITEI 113
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
T+ C P V T + D + D G+ + Y+C G
Sbjct: 114 TIPCRVTD-PQLVVTLHE-----KKGDVALPVPYDHQRGFSGI--FEDRSYICKTTIGDR 165
Query: 419 DPIRKEFNVIVRGN 432
+ + V
Sbjct: 166 EVDSDAYYVYRLQV 179
Score = 45.8 bits (108), Expect = 2e-05
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQIVGLVRQ 404
P + + L C PV W + + T VL + L
Sbjct: 6 PGPELVLNVSSTFVLTCSGSA---PV-VWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61
Query: 405 DAGIYVCVAANGIGDPIRKEFNVIV 429
D G Y C + G + + +
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYI 86
Score = 36.2 bits (83), Expect = 0.021
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+ + + R+ V+S N + V +G +TL CI IG +
Sbjct: 158 CKTTIGDREVDSDAY----YVYRLQVSSINVSVNAVQTVVR--QGENITLMCIVIGNEVV 211
Query: 154 VYTWSK 159
+ W+
Sbjct: 212 NFEWTY 217
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.2 bits (136), Expect = 3e-10
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 10/84 (11%)
Query: 337 PSPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
+ +P VE G + P W + S ++ DG
Sbjct: 3 MALIEV---EKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASP-DCEIIEDG 57
Query: 395 ---VLQIVGLVRQDAGIYVCVAAN 415
+L + G AAN
Sbjct: 58 KKHILILHNCQLGMTGEVSFQAAN 81
Score = 28.0 bits (63), Expect = 2.4
Identities = 6/45 (13%), Positives = 9/45 (20%), Gaps = 6/45 (13%)
Query: 118 AVASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ +P VE G + P W
Sbjct: 1 GAMALIEV---EKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLK 41
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 61.4 bits (148), Expect = 4e-10
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 326 VYTSTPYTPNIPSPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS 384
++ + + PR P E + T C A G P+P K
Sbjct: 355 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-------- 406
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
DG + L + G V R G Y+C A + G+ + +E V V
Sbjct: 407 DGTFPLPI-GESVTVT--RDLEGTYLCRARSTQGE-VTREVTVNVLS 449
Score = 50.6 bits (120), Expect = 1e-06
Identities = 47/334 (14%), Positives = 78/334 (23%), Gaps = 56/334 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPI 152
C + C G + + V P + G +TLRC G P
Sbjct: 65 CYSNCPDGQSTAKT--------FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Query: 153 P--VYTWSKG--EVSRKFFLRGFISANDLCFLESESGPCTQQEAAWYFDRNSFITMP--- 205
+G E+ R+ + + + A + R P
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHH------GANFSCRTELDLRPQGL 170
Query: 206 ELTPNTFLFQWTCVISGKNARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVC 265
EL NT A + + C++D E Q
Sbjct: 171 ELFENTSAPYQLQTFV-LPATPPQLVSPRVLEVDTQGTVVCSLD--GLFPVSEAQVH--- 224
Query: 266 RPLYKEGECRPQPQNVCADNCKDDADCTGQAKCCPNDCG-YSCSNLFDITTTTTTVSPAY 324
L + V N A + +C+ + + T
Sbjct: 225 --LALGD--QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ---- 276
Query: 325 PVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS 384
T I S P + E EG VT++C A + +
Sbjct: 277 --------TVTIYSFPAPNVILTKP-EVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRA 327
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
L + + + C A +
Sbjct: 328 Q----------LLLKATPEDNGRSFSCSATLEVA 351
Score = 47.2 bits (111), Expect = 1e-05
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEP-TVEAEEGNFVTLRCIAIGYPI 152
C A + +L V PR P E + T C A G P+
Sbjct: 344 CSATLEVAGQLIHKNQTRELR----VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 399
Query: 153 PVYTWSK 159
P K
Sbjct: 400 PELKCLK 406
Score = 46.4 bits (109), Expect = 2e-05
Identities = 18/157 (11%), Positives = 34/157 (21%), Gaps = 11/157 (7%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIP--VYTWSKGEVSIDGS 384
++ + P + G +TLRC G P +GE +
Sbjct: 74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE 133
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNYEQWYYDRDTDS 444
+ ++ + C + + F Q + T
Sbjct: 134 P-AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP 192
Query: 445 CQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPPPDPAQ 481
C + + P AQ
Sbjct: 193 QLVSPRVLEVDTQGTV----VCS---LDGLFPVSEAQ 222
Score = 35.6 bits (81), Expect = 0.051
Identities = 44/313 (14%), Positives = 68/313 (21%), Gaps = 45/313 (14%)
Query: 131 PTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRGFISANDLCFLESESGP--CT 188
V G V + C + ++ L G E C
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCY 66
Query: 189 QQEAAWYFDRNSFITMPELTPNTFLFQW-TCVISGKNARCRCFNPCQNQDPQCPSNTRCA 247
+F+T+ L + GKN RC Q
Sbjct: 67 SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRC---------QVEGG---- 113
Query: 248 VDLVRNPETRETQYIAVCRPLYKEGECRPQPQNVCADNCKDDADCTGQAKCCPNDCG--Y 305
P T L + + + V + A+ T + G +
Sbjct: 114 -----APRANLTVV------LLRGEKELKREPAV-----GEPAEVTTTVLVRRDHHGANF 157
Query: 306 SCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI 365
SC D+ TS PY P E T+ C
Sbjct: 158 SCRTELDLRPQ----GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 366 G---YPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIY--VCVAANGIGDP 420
G + G+ ++ Y V + +D G C G
Sbjct: 214 GLFPVSEAQVHLALGDQRLN-PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS- 271
Query: 421 IRKEFNVIVRGNY 433
V +
Sbjct: 272 QETLQTVTIYSFP 284
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 56.2 bits (136), Expect = 4e-10
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 337 PSPPRFHNYSEP--TVEAEEGNFVTLRC-IAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD 393
++ T+E EG + C ++ W+ G ++ S ++ T
Sbjct: 6 SGHVGI---TKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-SSSRFQATRQ 61
Query: 394 G---VLQIVGLVRQDAGIYVCVAAN 415
G +L + DAG V
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSVRG 86
Score = 30.8 bits (70), Expect = 0.30
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 118 AVASPPRFHNYSEP--TVEAEEGNFVTLRC-IAIGYPIPVYTWSKG 160
+ ++ T+E EG + C ++ W+ G
Sbjct: 4 GSSGHVGI---TKRLKTMEVLEGESCSFECVLSHESASDPAMWTVG 46
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 60.6 bits (146), Expect = 5e-10
Identities = 29/331 (8%), Positives = 69/331 (20%), Gaps = 67/331 (20%)
Query: 112 QLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG-----EVSRKF 166
++E++ F + +G +TL + P + +
Sbjct: 85 EVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL 144
Query: 167 FLRGFISAND----LCFLESESGPCTQQEAAWYFDRNSFITMPELTPNTFLFQWTCVISG 222
+ + D C + I + + G
Sbjct: 145 SVSQ-LELQDSGTWTCTVLQNQKKVE---------FKIDIVVLAFQKAS---SIVYKKEG 191
Query: 223 KNARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQNVC 282
+ + + + ++ T L + +
Sbjct: 192 EQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFD------LKNKEVSVKRVTQDP 245
Query: 283 ADNCKDDADCTG---QAKCCPNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPS 338
QA G + + V+ T
Sbjct: 246 KLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQ------- 298
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQI 398
L C G P S + + + +
Sbjct: 299 -------------------KNLTCEVWGPTSPKLMLSL-------KLENKEAKVSKREKA 332
Query: 399 VGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
V ++ +AG++ C+ ++ + E N+ V
Sbjct: 333 VWVLNPEAGMWQCLLSD--SGQVLLESNIKV 361
Score = 53.3 bits (127), Expect = 1e-07
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKG-EVSIDGSDGHYKLTL--------------- 392
V ++G+ V L C A + W ++ I G+ G +
Sbjct: 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 62
Query: 393 ---DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ L I L +D+ Y+C + + F +
Sbjct: 63 DQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 103
Score = 35.5 bits (81), Expect = 0.042
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 132 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRG 170
V ++G+ V L C A + W + +G
Sbjct: 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQG 41
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 57.1 bits (137), Expect = 6e-10
Identities = 20/126 (15%), Positives = 33/126 (26%), Gaps = 36/126 (28%)
Query: 339 PPRFHNYSEP----TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
PP+ H T+ GN + L G P P W K + +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 395 -------------------------------VLQIVGLVRQDAGIYVCVAANGIGDPIRK 423
+ + G ++D G+Y N +G+ +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQV 131
Query: 424 EFNVIV 429
V V
Sbjct: 132 NLTVKV 137
Score = 41.3 bits (96), Expect = 1e-04
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 122 PPRFHNYSEP----TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSRKFFLRGFISANDL 177
PP+ H T+ GN + L G P P W K
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 178 CFLESESGPCTQQEAAWYFDRNSFITMPELT 208
+S+ ++ R T + +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRS 103
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 57.6 bits (139), Expect = 7e-10
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 329 STPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGH 387
S P + + E + + LRC + + T+ +
Sbjct: 79 SDPVQLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH- 135
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ I +D+G Y C G + + N+ +
Sbjct: 136 -----NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 42.2 bits (99), Expect = 1e-04
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 10/77 (12%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
E + VTL+C P W E I I D+
Sbjct: 15 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS--------YFIDAATVNDS 66
Query: 407 GIYVCVAANGIG-DPIR 422
G Y C DP++
Sbjct: 67 GEYRCQTNLSTLSDPVQ 83
Score = 33.7 bits (77), Expect = 0.099
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 97 RCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVY 155
RC S ++ V + E + + LRC + +
Sbjct: 70 RCQTNLSTLSDPV------QLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSWKNTALHKV 121
Query: 156 TWSKGEVSRKFFLRG 170
T+ + RK+F
Sbjct: 122 TYLQNGKDRKYFHHN 136
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 59.7 bits (144), Expect = 9e-10
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 348 PTVEAEEGNFVTLRC-------IAIGYPIPVYTWSK--GEVSIDGSDGHYKLTLDGVLQI 398
EG V LRC A P TW K ++ G + DG L +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWL 85
Query: 399 VGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ +++D+G YVC N + + V
Sbjct: 86 LPALQEDSGTYVCTTRNASYC-DKMSIELRV 115
Score = 56.2 bits (135), Expect = 1e-08
Identities = 20/147 (13%), Positives = 34/147 (23%), Gaps = 25/147 (17%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
D G Y C N + + F +
Sbjct: 90 QEDSGTYVCTTRNASYCDKMSIELRVFEN-------------TDAFLPFISYPQILTLST 136
Query: 357 FVTLRC-----IAIGYPIPVYTWSKGEVSIDGSDGHYKLTL-DGVLQIVGLVRQDAGIYV 410
L C W K + +D + + L + + +DAG Y
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYR 196
Query: 411 CVAANGIGD---PIRKEFNVIVRGNYE 434
CV I + + ++ E
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKE 223
Score = 50.1 bits (119), Expect = 1e-06
Identities = 51/331 (15%), Positives = 89/331 (26%), Gaps = 76/331 (22%)
Query: 131 PTVEAEEGNFVTLRC-------IAIGYPIPVYTWSKG----EVSRKFFLRGFISANDLCF 179
EG V LRC A P TW K V + R + L
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWL 85
Query: 180 L---ESESGP--CTQQEAAWYFDRNSFITMPELTP--NTFLFQWTCVISGKNARCRCFNP 232
L + +SG CT + A++ + + + E T F+ + +
Sbjct: 86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVL----V 141
Query: 233 CQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQNVCA---DNCKDD 289
C + T + ++ L K+ E + +
Sbjct: 142 CPDLSEFTRDKTDVKIQWYKD-----------SLLLDKDNEKFLSVRGTTHLLVHDVA-- 188
Query: 290 ADCTGQAKCCPNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYS 346
D G Y C + + T S + P
Sbjct: 189 ----------LEDAGYYRCVLTFAHEGQQYNITRS-----IELRIKKKKEETIPVII-SP 232
Query: 347 EPTVEAEEGNFVTLRCIAI---GYPIPVYTWSK-GEVSIDGSDGHYKLTLDG-------- 394
T+ A G+ +T+ C G P+ W + I+ + ++T
Sbjct: 233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENN 292
Query: 395 ------VLQIVGLVRQDAGI-YVCVAANGIG 418
L + R+D + + CV N +
Sbjct: 293 ENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323
Score = 31.2 bits (70), Expect = 0.87
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAI---GYPIPVYTWSK 159
+ P T+ A G+ +T+ C G P+ W
Sbjct: 225 TIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWT 265
Score = 28.1 bits (62), Expect = 8.7
Identities = 8/67 (11%), Positives = 12/67 (17%), Gaps = 5/67 (7%)
Query: 119 VASPPRFHNYSEPTVEAEEGNFVTLRC-----IAIGYPIPVYTWSKGEVSRKFFLRGFIS 173
+ F + L C W K + F+S
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175
Query: 174 ANDLCFL 180
L
Sbjct: 176 VRGTTHL 182
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 55.7 bits (134), Expect = 9e-10
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD----- 393
P E + + G P P W ++ + + L+
Sbjct: 3 MPASVQLHTA----VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58
Query: 394 ----GVLQIVGLVRQDAGIYVCVAANGIG 418
G L++ + G Y +AAN G
Sbjct: 59 TVRHGCLRLNQPTHVNNGNYTLLAANPFG 87
Score = 30.7 bits (69), Expect = 0.50
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 4/38 (10%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
P E + + G P P W
Sbjct: 3 MPASVQLHTA----VEMHHWCIPFSVDGQPAPSLRWLF 36
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 54.7 bits (132), Expect = 1e-09
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
+S P V+AE G TL C + TW K + S
Sbjct: 5 SSGKVVF-AKEQPAHRE-----VQAEAGASATLSCE-VAQAQTEVTWYKDGKKLSSSS-K 56
Query: 388 YKLTLDG---VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
++ G L + + +AG Y C A + F + V G
Sbjct: 57 VRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ-----QLSFRLQVAG 98
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
V+AE G TL C + TW K
Sbjct: 21 VQAEAGASATLSCE-VAQAQTEVTWYKD 47
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 54.7 bits (132), Expect = 1e-09
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV-- 395
P + + + V L C P TW K ++ S+ + +DG
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFPA-TWYKDGQKVEESE-LLVVKMDGRKH 65
Query: 396 -LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L + QD+G + C F V V+
Sbjct: 66 RLILPEAKVQDSGEFECRTEGV-----SAFFGVTVQ 96
Score = 28.5 bits (64), Expect = 1.9
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 118 AVASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
+ +S P + ++ V L C P TW K
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPA-TWYKDGQ 48
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 57.5 bits (138), Expect = 1e-09
Identities = 22/120 (18%), Positives = 30/120 (25%), Gaps = 15/120 (12%)
Query: 326 VYTSTPYT--PNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVY--TWSKGEVSI 381
Y S Y +E G + L C A W
Sbjct: 89 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 148
Query: 382 D----------GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G L I G+ R D G+Y C A++G+ + V V
Sbjct: 149 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHE 207
Score = 41.3 bits (96), Expect = 4e-04
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 3/103 (2%)
Query: 331 PYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG-HYK 389
+P I S H + + V + C+ + V ++ DG
Sbjct: 2 YRSPFIASVSDQHG--VVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS 59
Query: 390 LTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGN 432
I + AG+ C A + V+V G
Sbjct: 60 WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY 102
Score = 34.8 bits (79), Expect = 0.047
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 153
C+A+ ++ + + +E G + L C A
Sbjct: 81 CEAKINDESYQSI-----MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV 135
Query: 154 VYTWS 158
++
Sbjct: 136 GIDFN 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 59.0 bits (142), Expect = 1e-09
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVR-Q 404
P + G+ V LRC G + W E+ + L + +
Sbjct: 164 QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDL 223
Query: 405 DAGIYVCVAANGIGDPIRK-EFNVIVRGNYEQWYYDRDTDSCQPFQYGG 452
+ C A N +G + NV + + C PF G
Sbjct: 224 NRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDG 272
Score = 50.5 bits (120), Expect = 9e-07
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 31/136 (22%)
Query: 305 YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRC 362
+C N + V+ ++P + +
Sbjct: 228 VTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH-------------------WCIPF 268
Query: 363 IAIGYPIPVYTWSKGEVSIDGSDGHYKLTL---------DGVLQIVGLVRQDAGIYVCVA 413
G P P W ++ + + L G L++ + G Y +A
Sbjct: 269 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 328
Query: 414 ANGIGDPIRKEFNVIV 429
AN G
Sbjct: 329 ANPFGQ-ASASIMAAF 343
Score = 32.4 bits (73), Expect = 0.47
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVS 163
P + G+ V LRC G + W E+
Sbjct: 164 QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELE 198
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 54.8 bits (132), Expect = 2e-09
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH 387
+S ++ S + + V A V L C + P W+K + S
Sbjct: 2 SSGSSGTDVSSWIVYPSGKV-YVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVESP-A 58
Query: 388 YKLTLDG---VLQIVGLVRQDAGIYVCVAAN 415
L + L + + +D+G Y+C +
Sbjct: 59 LLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89
Score = 30.9 bits (70), Expect = 0.41
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 118 AVASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ + Y V A V L C + P W+K
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTK 48
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 54.3 bits (131), Expect = 2e-09
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 339 PPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG---HYKLTLD 393
P P + G+ V + + W K V + D Y+ D
Sbjct: 8 PVLI---VTPLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Query: 394 G---VLQIVGLVRQDAGIYVCVAANG 416
G +L +V++D G Y + G
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVITNGG 89
Score = 29.2 bits (66), Expect = 1.3
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 6/45 (13%)
Query: 120 ASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
+ P P + G+ V + + W K V
Sbjct: 6 SGPVLI---VTPLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGV 46
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 338 SPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-- 394
S + + T G + L+C W+K + + SD K+ G
Sbjct: 6 SGLKI--LTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESD-RLKVVQKGRI 60
Query: 395 -VLQIVGLVRQDAGIYVCVAANG 416
L I + +D G YV
Sbjct: 61 HKLVIANALTEDEGDYVFAPDAY 83
Score = 28.5 bits (64), Expect = 2.3
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 120 ASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+S + + T G + L+C W+K
Sbjct: 5 SSGLKI--LTPLTDQTVNLGKEICLKCEISENIPG--KWTKN 42
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 54.7 bits (131), Expect = 3e-09
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 13/98 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTW------------SKGEVSIDGSDGHYKLTLD 393
+E G + L C A + + G
Sbjct: 14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 73
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
L I G+ R D G+Y C A++G+ + V V
Sbjct: 74 STLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHE 110
Score = 32.0 bits (72), Expect = 0.19
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWS 158
+E G + L C A ++
Sbjct: 14 PSHGIELSVGEKLVLNCTARTELNVGIDFN 43
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 53.9 bits (130), Expect = 3e-09
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 338 SPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG- 394
F +E ++ EE C +P TW KG + + S ++ + +G
Sbjct: 7 GANCF---TEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASG-KHQPSQEGL 61
Query: 395 --VLQIVGLVRQDAGIYVCVAAN 415
L I L + D+ Y C
Sbjct: 62 TLRLTISALEKADSDTYTCDIGQ 84
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 120 ASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ F +E ++ EE C +P TW KG
Sbjct: 6 SGANCF---TEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKG 44
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 54.3 bits (130), Expect = 3e-09
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 334 PNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPV--YTWSKGEVSIDGSDGHYKLT 391
P I P T A G+ V+ C A + W ++ ++
Sbjct: 11 PQITVQP-------ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 392 LD----------GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L +L++ + G Y CV +N G + +
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 28.9 bits (64), Expect = 1.7
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 131 PTVEAEEGNFVTLRCIAIGYPIPVYTWS 158
T A G+ V+ C A T++
Sbjct: 18 ETQSAIXGSDVSFTCSAASSSDSPMTFA 45
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 56.4 bits (136), Expect = 3e-09
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 329 STPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA-IGYPIPVYTWSKGEVSIDGSDGH 387
S P + + E + + LRC + + T+ +
Sbjct: 79 SDPVQLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH- 135
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ I +D+G Y C G + + + +
Sbjct: 136 -----NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Score = 41.8 bits (98), Expect = 2e-04
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 10/77 (12%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPV-YTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
E + VTL+C P W E I I D+
Sbjct: 15 QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS--------YFIDAATVDDS 66
Query: 407 GIYVCVAANGIG-DPIR 422
G Y C DP++
Sbjct: 67 GEYRCQTQLSTLSDPVQ 83
Score = 32.5 bits (74), Expect = 0.27
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 116 RIAVASPPRFHNYSEPTVEAEEGNFVTLRCIA-IGYPIPVYTWSKGEVSRKFFLRG 170
++ V + E + + LRC + + T+ + RK+F
Sbjct: 83 QLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN 136
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 53.8 bits (129), Expect = 5e-09
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 350 VEAEEGNFVTLRCIAIGYPI---PVYTWSKGEVS--IDGSDGHYKLTLDG---------V 395
+ G +T + P W KG+ + H +L
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+QI+ AG Y C F++ V
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEV 109
Score = 30.3 bits (68), Expect = 0.68
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 133 VEAEEGNFVTLRCIAIGYPI---PVYTWSKGE 161
+ G +T + P W KG+
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGK 48
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 55.3 bits (132), Expect = 6e-09
Identities = 19/130 (14%), Positives = 30/130 (23%), Gaps = 5/130 (3%)
Query: 292 CTGQAKCCPNDCGYSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVE 351
C G Y D + + + V
Sbjct: 66 CKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVS 125
Query: 352 AEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQ--DAGIY 409
G V L C YP W + +I G + + D + + +G Y
Sbjct: 126 IS-GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYY 182
Query: 410 VCVAANGIGD 419
VC +
Sbjct: 183 VCYPRGSKPE 192
Score = 49.5 bits (117), Expect = 7e-07
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 351 EAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYV 410
+ +E V L C TW K I K + + G+Y
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK-----WNLGSNAKDPRGMYQ 65
Query: 411 CVAANGIGDPIRKEFNVIV 429
C + P++ + +
Sbjct: 66 CKGSQNKSKPLQVYYRMGS 84
Score = 27.6 bits (60), Expect = 9.7
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 134 EAEEGNFVTLRCIAIGYPIPVYTWSKG 160
+ +E V L C TW K
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFKD 37
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 56.8 bits (136), Expect = 7e-09
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 18/145 (12%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
ND G Y+C N + + V + P + +E
Sbjct: 88 LNDTGNYTCMLRNTTYCSKVAFPLE----VVQKDSCFNSPMKLP----VHKLYIEYGIQR 139
Query: 357 FV--TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVA- 413
+ P TW G I + + L + + + G Y CV
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVT 197
Query: 414 --ANGIGDPIRKEFNVIVRGNYEQW 436
NG + + V V G+ +
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNA 222
Score = 47.9 bits (113), Expect = 5e-06
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 22/150 (14%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTV-EAEEGNF 357
++ G Y+C + T ++ V P PP H+ ++ V E E G
Sbjct: 186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS--PKNAVPPVIHSPNDHVVYEKEPGEE 243
Query: 358 VTLRCIAI----GYPIPVYTWSKGEVSIDGSDGHYKL------------TLDGVLQIVGL 401
+ + C W+ D + T +L I +
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303
Query: 402 VRQD-AGIYVCVAANGIGDPIRKEFNVIVR 430
+D YVC A + G+ + K V +
Sbjct: 304 TSEDLKRSYVCHARSAKGE-VAKAAKVKQK 332
Score = 45.2 bits (106), Expect = 3e-05
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 19/103 (18%)
Query: 348 PTVEAEEGNFVTLRCIAI-----------GYPIPVYTWSK------GEVSIDGSDGHYKL 390
++ E ++C W E I+ ++
Sbjct: 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI 74
Query: 391 TLD-GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGN 432
+ + VL + D G Y C+ N + F + V
Sbjct: 75 SKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQK 116
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 52.8 bits (127), Expect = 8e-09
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 337 PSPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG 394
P RF ++ T EA EG TL+C + W KG ++ Y L DG
Sbjct: 6 SGPARF---TQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGG-RYSLKQDG 59
Query: 395 ---VLQIVGLVRQDAGIYVCVAAN 415
LQI L DAG Y C+
Sbjct: 60 TRCELQIHDLSVADAGEYSCMCGQ 83
Score = 28.1 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 120 ASPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
+ P RF ++ T EA EG TL+C + W KG
Sbjct: 6 SGPARF---TQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPE 45
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 55.7 bits (134), Expect = 9e-09
Identities = 18/121 (14%), Positives = 28/121 (23%), Gaps = 24/121 (19%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
ND G Y C + S P+ + EG +
Sbjct: 57 VNDSGEYRC------QRGLSGRSD--PIQLEIHRGWLLLQVSSR--------VFTEGEPL 100
Query: 359 TLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI 417
LRC A + + + + + L I+ G Y C
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFKFFHW------NSNLTILKTNISHNGTYHCSGMGKH 154
Query: 418 G 418
Sbjct: 155 R 155
Score = 54.2 bits (130), Expect = 3e-08
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
+ G Y CS + T+ +S V + P + + T EGN V
Sbjct: 140 ISHNGTYHCSGMGKHRYTSAGIS--VTVK-------ELFPAPVLN--ASVTSPLLEGNLV 188
Query: 359 TLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
TL C + + QI+ R+D+G+Y C AA G
Sbjct: 189 TLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-NTSSEYQILTARREDSGLYWCEAATEDG 247
Query: 419 DPIRK--EFNVIVRG 431
+ +++ E + V G
Sbjct: 248 NVLKRSPELELQVLG 262
Score = 48.4 bits (115), Expect = 2e-06
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIP-VYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
P V + VTL C + P W + S +I D+
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS--------YRITSASVNDS 60
Query: 407 GIYVCVAANGIG-DPIRKEF 425
G Y C DPI+ E
Sbjct: 61 GEYRCQRGLSGRSDPIQLEI 80
Score = 33.7 bits (77), Expect = 0.13
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 97 RCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVY 155
RC G S + + S EG + LRC A +
Sbjct: 64 RCQRGLSGRSDPIQLE------IHRGWLLLQVSSRVFT--EGEPLALRCHAWKDKLVYNV 115
Query: 156 TWSKGEVSRKFF 167
+ + + KFF
Sbjct: 116 LYYRNGKAFKFF 127
Score = 29.5 bits (66), Expect = 3.2
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTW 157
P + T EGN VTL C
Sbjct: 169 FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQ 204
Score = 29.1 bits (65), Expect = 4.3
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 131 PTVEAEEGNFVTLRCIAIGYPIP-VYTWSK 159
P V + VTL C + P W
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFL 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 56.7 bits (137), Expect = 1e-08
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 334 PNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK--GE-VSIDGSDGHYKL 390
P I PP + EG L+C A + +W G ++ +
Sbjct: 342 PVIVEPPA-------DLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAV 393
Query: 391 TLDGVLQIVGLVRQDAGIYVCVAANGIG 418
DG L + QD G+Y C+ +N +G
Sbjct: 394 LSDGTLNFTNVTVQDTGMYTCMVSNSVG 421
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 52.0 bits (125), Expect = 1e-08
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 8/84 (9%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
+ + + +C + W K V + S ++ G
Sbjct: 8 QLEV--LQDIADLTVKAAEQAVFKCEVSDEKVTG-KWYKNGVEVRPSK-RITISHVGRFH 63
Query: 395 VLQIVGLVRQDAGIYVCVAANGIG 418
L I + +D G Y V
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYAL 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 56.7 bits (137), Expect = 1e-08
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 334 PNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK--GEVSIDGS-DGHYKL 390
P I PR + EG L+C P+ W G V S +
Sbjct: 353 PFIMDAPR-------DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISV 403
Query: 391 TLDGVLQIVGLVRQDAGIYVCVAANGIG 418
DG L ++ D G+Y C+ N G
Sbjct: 404 LNDGTLNFSHVLLSDTGVYTCMVTNVAG 431
>3ngg_A Omwaprin-A; venom protein, racemic protein crystallography, direct
metho antibiotic; 1.33A {Oxyuranus microlepidotus}
Length = 50
Score = 49.9 bits (119), Expect = 2e-08
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 270 KEGECRPQPQNVCADNCKDDADCTGQAKCCPNDCGYSC 307
K G C P+PQ C CK+D C GQ KCC C C
Sbjct: 6 KPGLCPPRPQKPCVKECKNDDSCPGQQKCCNYGCKDEC 43
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.4 bits (136), Expect = 2e-08
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQDA 406
E EG C I PV TW K + + S Y +G L I + D
Sbjct: 492 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV-KYMKRYNGNDYGLTINRVKGDDK 550
Query: 407 GIYVCVAANGIG 418
G Y A N G
Sbjct: 551 GEYTVRAKNSYG 562
Score = 32.5 bits (74), Expect = 0.44
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 133 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEV----SRKF 166
E EG C I PV TW K + S K+
Sbjct: 492 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY 529
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 51.2 bits (123), Expect = 2e-08
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 334 PNIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTL 392
P F +P VE G+ + V W +G I S+ Y L
Sbjct: 3 PGKKPVSAFS--KKPRSVEVAAGSPAVFEAETERAGVKV-RWQRGGSDISASN-KYGLAT 58
Query: 393 DG---VLQIVGLVRQDAGIYVCVAAN 415
+G L + + D G Y +A +
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIAGS 84
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 52.0 bits (125), Expect = 2e-08
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 339 PPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG--- 394
P +F EA EG LRC PV W KG ++ D + L DG
Sbjct: 19 PIKFT--EGLRNEEATEGATAVLRCELSKMA-PV-EWWKGHETLRDGD-RHSLRQDGARC 73
Query: 395 VLQIVGLVRQDAGIYVCVA 413
LQI GLV +DAG Y+C+
Sbjct: 74 ELQIRGLVAEDAGEYLCMC 92
Score = 26.9 bits (60), Expect = 8.9
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 119 VASPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
A P +F EA EG LRC PV W KG
Sbjct: 16 RALPIKFT--EGLRNEEATEGATAVLRCELSKMA-PV-EWWKGHE 56
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 54.0 bits (129), Expect = 2e-08
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 347 EPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDA 406
E A+ G+ V+L C G P ++W S + T L + + +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGT-TSTLTMNPVSFGNE 66
Query: 407 GIYVCVAANGIGDPIRKEFNVIVRGNYEQ 435
Y+C A + K V + +
Sbjct: 67 HSYLCTATCESR-KLEKGIQVEIYSFPKD 94
Score = 40.1 bits (93), Expect = 8e-04
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 26/127 (20%)
Query: 303 CGYSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRC 362
C +C + + P I E G +T++C
Sbjct: 71 CTATCESRKLEKGIQVEIYSFPKD-------PEIHLSG----------PLEAGKPITVKC 113
Query: 363 IAIG-YPIP--VYTWSKGEVSIDGS------DGHYKLTLDGVLQIVGLVRQDAGIYVCVA 413
YP KG+ + D T + ++ + VC A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173
Query: 414 ANGIGDP 420
I +
Sbjct: 174 KLHIDEM 180
Score = 37.1 bits (85), Expect = 0.007
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 130 EPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE---VSRKFFLRGFISANDLCFLESESGP 186
E A+ G+ V+L C G P ++W ++ K G S + + +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 187 ---CTQQEAAWYFDRNSFITMPELTPNTFLFQWTCVISGKNARCRC 229
CT + ++ + + + + + +GK +C
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113
Score = 31.7 bits (71), Expect = 0.55
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 12/71 (16%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPI 152
C A C ++ + S P+ E G +T++C YP
Sbjct: 71 CTATCESRKLEKGI--------QVEIYSFPKDPEIHLSG-PLEAGKPITVKCSVADVYPF 121
Query: 153 P--VYTWSKGE 161
KG+
Sbjct: 122 DRLEIDLLKGD 132
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 53.3 bits (128), Expect = 2e-08
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 349 TVEAEEGNFVTLRC--IAIGYPIPVYTWSKG-----------EVSIDGSDGHYKLTLDGV 395
G + L + I W K E YKL +G
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 396 LQIVGLVRQDAGIYVCVAANGIG-DPIRKEFNVIV 429
L+I L D IY + G + + K F++ +
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102
Score = 48.3 bits (115), Expect = 1e-06
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQD 405
S+P + N TL C + P + L L +
Sbjct: 107 SKPKISWTCIN-TTLTCEVMNGTDPELNLYQDGKH---------LKLSQRVITHKWTTSL 156
Query: 406 AGIYVCVAANGIG 418
+ + C A N +
Sbjct: 157 SAKFKCTAGNKVS 169
Score = 32.5 bits (74), Expect = 0.21
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
S+P + N TL C + P +
Sbjct: 107 SKPKISWTCIN-TTLTCEVMNGTDPELNLYQD 137
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 50.4 bits (121), Expect = 4e-08
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 338 SPPRFHNYSEP--TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI-DGSDGHYKLTLDG 394
S ++ A G V L C + W K I G Y++ ++G
Sbjct: 6 SGIMV---TKQLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 395 ---VLQIVGLVRQDAGIYVCVAANG 416
+L I G + DA Y + G
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTGG 86
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 49.6 bits (118), Expect = 1e-07
Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 15/94 (15%)
Query: 350 VEAEEGNFVTLRCIAIGYPI---PVYTWSKGE-----------VSIDGSDGHYKLTLDGV 395
E G +T G + PV W KG+ + + S
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 396 LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
L I G Y C + FN+ V
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLTV 106
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 133 VEAEEGNFVTLRCIAIGYPI---PVYTWSKGE 161
E G +T G + PV W KG+
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGK 45
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 50.4 bits (120), Expect = 4e-07
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK--GEVSIDGSDGHYKLTLDG-- 394
P V + L C A GYP W+ +V + +
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 395 -VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
V + + I+ C + +++
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPE-ENHTAELVIPE 211
Score = 35.7 bits (82), Expect = 0.022
Identities = 9/40 (22%), Positives = 12/40 (30%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
P V + L C A GYP W+ +
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD 154
Score = 30.7 bits (69), Expect = 1.1
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 27/113 (23%)
Query: 349 TVEAEEGNFVTLRCIAIGYP---------------IPVYTWSKGEVSIDGSDGHYK---- 389
E G+ +T+ C + + GE + Y+
Sbjct: 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR 69
Query: 390 LTLDGV------LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNYEQW 436
L D + LQI + QDAG+Y C+ + G K V V Y +
Sbjct: 70 LLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKI 120
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 52.3 bits (124), Expect = 4e-07
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 15/127 (11%)
Query: 216 WTCVISGKNARC-RCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLY----- 269
+ V + +C +C PC+ +C + + + C L
Sbjct: 49 GSLVWCQNHKQCSKCLEPCKESGDLRK--HQCQSFCEPLFPKKSYECLTSCEFLKYILLV 106
Query: 270 KEGECRPQPQ------NVCADNCKDDADCTGQAKCCPNDCGYSCSNLFDITTTTTTVSPA 323
K+G+C P P+ C ++C+ D +C+G KCC N CG++C +
Sbjct: 107 KQGDC-PAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRK 165
Query: 324 YPVYTST 330
+T
Sbjct: 166 ELRFTEL 172
Score = 32.2 bits (72), Expect = 0.54
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 238 PQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQ-NVCADNCKDDADCTGQA 296
RCA + TR + + + C+ Q + C + CK+ D
Sbjct: 18 AGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLR--- 74
Query: 297 KCCPNDCGYSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEA 352
+ C C LF + S + Y + P+P + ++ VE+
Sbjct: 75 ---KHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVES 127
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 49.2 bits (117), Expect = 5e-07
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 349 TVEAEEGNFVTLRC--IAIGYPIPVYTWSKGEVSI---------DGSDGHYKLTLDGVLQ 397
TV G+ + L + I W +G + G +++ +G L+
Sbjct: 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK 64
Query: 398 IVGLVRQDAGIYVCVAANGIG-DPIRKEFNV 427
I L R D+G Y + G + K ++
Sbjct: 65 IKNLTRDDSGTYNVTVYSTNGTRILNKALDL 95
Score = 41.5 bits (97), Expect = 2e-04
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQD 405
S+P + E N TL C + +G+ + +
Sbjct: 102 SKPMIYWECSN-ATLTCEVLEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNL 151
Query: 406 AGIYVCVAANGIG 418
+ C A N +
Sbjct: 152 RAPFKCKAVNRVS 164
Score = 29.5 bits (66), Expect = 2.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKG 160
S+P + E N TL C + +G
Sbjct: 102 SKPMIYWECSN-ATLTCEVLEGTDVELKLYQG 132
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 49.3 bits (117), Expect = 7e-07
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
+ +E V L C A GYP+ +W V + S + T +G+ Q
Sbjct: 101 VKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS---HIRTPEGLYQ 157
Query: 398 IVGLVR---QDAGIYVCVAANGIGDPIRKEFNVIVRGNYE 434
+ ++R Q + + C+ N + E
Sbjct: 158 VTSVLRLKPQPSRNFSCMFWNAHM-KELTSAIIDPLSRME 196
Score = 42.3 bits (99), Expect = 1e-04
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 347 EPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSD-----GHYKLTLDGV------ 395
+ + G+ V+L C + + +D L + +
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 396 LQIVGLVRQDAGIYVCVAANGIG 418
I + +D+G Y C+ G
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAA 91
Score = 35.4 bits (81), Expect = 0.026
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 103 FVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEV 162
V AA D + V + +E V L C A GYP+ +W V
Sbjct: 85 LVICGAAWD--YKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV 142
Query: 163 S 163
Sbjct: 143 P 143
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 49.4 bits (117), Expect = 3e-06
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG-----HYKLT 391
P H VE G F T +C AIG + + + +
Sbjct: 161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 392 LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+V ++DAG Y C+ G I ++V+
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Score = 32.1 bits (72), Expect = 0.60
Identities = 12/108 (11%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 311 FDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP 370
F + + N FH + + G + + P+
Sbjct: 48 FMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGL-LNVYVKVNNGPLG 106
Query: 371 VYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
W+ S + L I + V +G
Sbjct: 107 NPIWNI-------SGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQ 147
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 45.0 bits (106), Expect = 6e-06
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 340 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH-------YKLTL 392
N++E T+ EEG +TL+C+ W + + Y+L
Sbjct: 2 GSLTNHTE-TITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60
Query: 393 ----DGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ + + QD G+Y C+ + KE VIV
Sbjct: 61 HSANQLSITVPNVTLQDEGVYKCLHYS--DSVSTKEVKVIV 99
Score = 30.0 bits (67), Expect = 0.95
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 123 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
N++E T+ EEG +TL+C+ W
Sbjct: 2 GSLTNHTE-TITVEEGQTLTLKCVTSLRKNSSLQWLT 37
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 47.1 bits (111), Expect = 8e-06
Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 18/117 (15%)
Query: 312 DITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPT-VEAEEGNFVTLRC---IAIGY 367
+ + TV + + + N +EP V L + G
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGK 122
Query: 368 PIPV-----YTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419
Y+WSKGE ID + + I G+Y D
Sbjct: 123 TPADNYELHYSWSKGEDVIDTT---------QDITIQEFTADKNGVYTVKVWGESED 170
Score = 43.7 bits (102), Expect = 1e-04
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 19/89 (21%)
Query: 334 PNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPV---YTWSKGEVSIDGSDGHYK 389
+ G+ TL G P+P YTW+K + + +
Sbjct: 3 FTVSIQS-------NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-- 53
Query: 390 LTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
L + ++AG Y +
Sbjct: 54 ------LTVADATSENAGSYKVTVQDTDT 76
Score = 41.4 bits (96), Expect = 6e-04
Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 36/142 (25%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+ G Y+ + + + + + + GN
Sbjct: 154 ADKNGVYTVKVWGESEDSAASASTKIMLA-----TMNVDQDVVE--------SKTVALGN 200
Query: 357 FVTLRCI--------AIGYPIPVYTWS-----KGEVS-------IDGSDGHYKLTLDGVL 396
++L + + G P ++ +G++S + + + +T DG L
Sbjct: 201 EISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHL 260
Query: 397 QIVGLVRQDAGIYVCVAANGIG 418
D + CVA
Sbjct: 261 FKESATYDDTAKFWCVAKLYQQ 282
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 44.5 bits (105), Expect = 9e-06
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 349 TVEAEEGNFVTLRC-IAIGYPIPVYTWSKGE----VSIDGS-----DGHYK--LTLD--- 393
+ G+ VTL ++ TW V D + +K + LD
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 394 GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
G L I + ++D Y+ G+ + + V
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 46.5 bits (109), Expect = 2e-05
Identities = 21/149 (14%), Positives = 35/149 (23%), Gaps = 14/149 (9%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
+D G Y C + + ++ F + E N
Sbjct: 194 LSDAGQYLCQAGDDS--NSNKKNADLQVLKPEPELVYEDLRGSVTF----HCALGPEVAN 247
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG-----VLQIVGLVRQDAGIYVC 411
C + +G L + I GL ++DAG Y+C
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307
Query: 412 VAANGIGDPIRKEFNVIVRGNYEQWYYDR 440
A + E+ R
Sbjct: 308 GAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Score = 44.6 bits (104), Expect = 8e-05
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 13/96 (13%)
Query: 348 PTVEAEEGNFVTLRCI----AIGYPIPVYTWSKGEVSIDGSDGHYKL---------TLDG 394
V A G + + C Y W+ S +
Sbjct: 450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLV 509
Query: 395 VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
L + + R D G Y C G V V
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 9/179 (5%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYS-EPTVEAEEGNF 357
+D G Y C + + VS + + + + E
Sbjct: 84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQK 143
Query: 358 VTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG------VLQIVGLVRQDAGIYVC 411
IG + S G V+ G +L + G + I L DAG Y+C
Sbjct: 144 RKSLYKQIGLYPVLVIDSSGYVN-PNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLC 202
Query: 412 VAANGIGDPIRKEFNVIVRGNYEQWYYDRDTDSCQPFQYGGCQGNHNRFNDQWSCQKRC 470
A + + +++ E Y D G N +F + S + C
Sbjct: 203 QAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENC 261
Score = 39.2 bits (90), Expect = 0.004
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 21/96 (21%)
Query: 349 TVEAEEGNFVTLRC---IAIGYPIPVYTWSKGE-----VSIDGSDGHYKLTLDG------ 394
V + EGN V++ C W + +++ S+G+ G
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 395 -------VLQIVGLVRQDAGIYVCVAANGIGDPIRK 423
V+ I L + D+G Y C
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD 104
Score = 39.2 bits (90), Expect = 0.004
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 21/102 (20%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP-VYTWSKGEVSIDG-------SDGHYKL 390
S V+ G+ V + C + W E + +G S+G K
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389
Query: 391 TLDG-------------VLQIVGLVRQDAGIYVCVAANGIGD 419
+G + + L +DAG Y C+
Sbjct: 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Score = 28.4 bits (62), Expect = 7.6
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 122 PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIP-VYTWSKGEVSRKFFLRGFISAN 175
S V+ G+ V + C + W E ++ + +
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE 384
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 42.2 bits (99), Expect = 4e-05
Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 14/100 (14%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVY--TWSK------------GEVSIDGSDGHYKLT 391
+ + AE+G + L+C V W + G
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68
Query: 392 LDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
L + L D G Y C+ + V
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE 108
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 44.1 bits (103), Expect = 6e-05
Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 26/111 (23%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCI---AIGYPIPVYTWSKGEVSIDGS---------- 384
P S P + G V + C+ + W + D S
Sbjct: 4 GLPGL-TVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNL 62
Query: 385 ---DGHYK---------LTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRK 423
G ++ DG L + + + D GIY C + K
Sbjct: 63 SVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMK 113
Score = 42.2 bits (98), Expect = 3e-04
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 30/143 (20%)
Query: 345 YSEPTVEAEEGNFVTLRCIAIGYP---IPVYTWSK-----------------GEVSIDGS 384
+ G+ +RC + W S
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 385 DGHYK---------LTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRK-EFNVIVRGNYE 434
G ++ DG +++ + D GIY C G + + +V+
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Query: 435 QWYYDRDTDSCQPFQYGGCQGNH 457
TD Q G Q +H
Sbjct: 243 TISPTPPTDKGQQGILNGNQHHH 265
Score = 29.8 bits (66), Expect = 2.5
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 4/42 (9%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCI---AIGYPIPVYTWSK 159
P S P + G V + C+ + W
Sbjct: 4 GLPGL-TVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLF 44
Score = 28.3 bits (62), Expect = 7.0
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 7/63 (11%)
Query: 104 VTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIGYP---IPVYTWSKG 160
+ ++ + + P + G+ +RC + W
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPRD----LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158
Query: 161 EVS 163
S
Sbjct: 159 SGS 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-05
Identities = 78/498 (15%), Positives = 139/498 (27%), Gaps = 211/498 (42%)
Query: 5 FLQFIAKDICLQPAVIGDCANYVLTWYYDSNTSCFPQFIAKDI-CLQPAVIGD------C 57
FL +++ + +P+ +G + VL +C+ + DI L ++ +
Sbjct: 64 FLGYVSSLV--EPSKVGQ-FDQVLNLCLTEFENCYLE--GNDIHALAAKLLQENDTTLVK 118
Query: 58 ANYVLTWYYDSLEARCR-------------------QFY--YGGCGGNQNNFMTE----- 91
++ Y + R Q +GG GN +++ E
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-QGNTDDYFEELRDLY 177
Query: 92 --------EACQARCAGGTFVTSSAAPDQ--------------LENRIAV------ASPP 123
+ + + T LEN S P
Sbjct: 178 QTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 124 RFHNYSEPTVEAEE-GNFVTLRCIAIGY-PIPVYTWSKGEVSRKFFLRGFISANDLCFLE 181
S P + + ++V +G+ P + ++ KG +G ++A + E
Sbjct: 236 ----ISCPLIGVIQLAHYVVT-AKLLGFTPGELRSYLKGATGH---SQGLVTA--VAIAE 285
Query: 182 SESGPCTQQEAAW-YFDRNSFITMPELTPNTFLFQWTCVISGKNARCRCFNPCQNQDPQC 240
++S W F + + T LF + G RC P
Sbjct: 286 TDS---------WESFFVSVRKAI------TVLF-FI----G----VRC----YEAYPNT 317
Query: 241 ---PSNTRCAVD----------LVRNPETRETQ----------------YIA-------- 263
PS +++ + N + Q I+
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 264 -VCRP---LYKEGECRPQPQNVCADNCKDDADCTGQAKCCPNDCGYS-----CSNLFDIT 314
V P LY G + A + D Q++ P +S SN F
Sbjct: 378 VVSGPPQSLY--GLNL-TLRKAKAPSGLD------QSRI-P----FSERKLKFSNRFL-- 421
Query: 315 TTTTTVSPAYPVYTSTPYTPNIPSPPRFH-NYSEPTVEAEEGNFVTLRCIAIGYP----- 368
PV ++P FH + P + + L + +
Sbjct: 422 ----------PV--ASP----------FHSHLLVPASDLINKD---LVKNNVSFNAKDIQ 456
Query: 369 IPVY-TWSKGEVSIDGSD 385
IPVY T+ DGSD
Sbjct: 457 IPVYDTF-------DGSD 467
Score = 36.6 bits (84), Expect = 0.028
Identities = 81/606 (13%), Positives = 149/606 (24%), Gaps = 217/606 (35%)
Query: 139 NFVTLRCIAIGY-------PIPVYTWSKGEVSRKFFL-------RGFISAND-------- 176
+ + R + + + +P ++ ++ F GF + ++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 177 ---LCFLES--ESGPCTQQEAA-----WYFDRN--------SFI-TMPELTPNTFLFQWT 217
L ++ S E Q + F+ + + + T
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT------ 115
Query: 218 CVISGKNARCRC-FNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVC----------- 265
+ + + A L R Q +A+
Sbjct: 116 --LVKTKELIKNYITARIMAKRPFDKKSNSA--LFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 266 --RPLYKEGECRPQP-QNVCADNCKDDADCTGQAKCCPNDCGYSCSNLFDITT--TTTTV 320
R LY+ A+ + D + +I +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIR-------TTLDAEKVFTQGLNILEWLENPSN 224
Query: 321 SPAYPVYTSTPYT-PNI----------------PSPPRFHNYSEPTVEAEEGNFVTLRCI 363
+P S P + P I +P +Y + +G VT I
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTAVAI 283
Query: 364 A---------------------IG------YP---IPV----YTWSKGE------VSIDG 383
A IG YP +P + E +SI
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 384 SDGHYKLTLDGVLQIVGLVRQ----DAGIYVCVAANGIGDPIRKEFNVIVRGNYEQWY-- 437
LT + V V + + + NG K N++V G + Y
Sbjct: 344 ------LTQEQVQDYVNKTNSHLPAGKQVEISL-VNG-----AK--NLVVSGPPQSLYGL 389
Query: 438 --------YDRDTDSCQ-PFQYGGCQ---GNHNRFNDQWSCQKRCVQNIPPPDPAQTP-- 483
D + PF + NRF P +P
Sbjct: 390 NLTLRKAKAPSGLDQSRIPF----SERKLKFSNRF-----------------LPVASPFH 428
Query: 484 STTLAPRQEAARNDLCFLESESGPCTQQEAAWYFDRNTYRCQSFIYGGCEGNANRFNTEE 543
S L P + DL + F+ + +Y +G+ R +
Sbjct: 429 SHLLVPASDLINKDL------------VKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGS 474
Query: 544 QCERLCGEFRAEDPV------GQRPAAVIGEDPTSESNGTTTRIGNSAVNSTMEA--VRA 595
ER+ PV + ++ P G + +G + + VR
Sbjct: 475 ISERIVDCI-IRLPVKWETTTQFKATHILDFGP-----GGASGLG-VLTHRNKDGTGVRV 527
Query: 596 ITTGSI 601
I G++
Sbjct: 528 IVAGTL 533
Score = 33.9 bits (77), Expect = 0.19
Identities = 52/300 (17%), Positives = 84/300 (28%), Gaps = 113/300 (37%)
Query: 17 PAVIG--DCANYVLTWYYDSNTSCFPQFIAKDICLQPAVIGD-------CANYVL----- 62
P +IG A+YV+T AK + P + + ++
Sbjct: 239 P-LIGVIQLAHYVVT--------------AKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 63 ----TW--YYDSLEARCRQFYYGGCGGNQNNFMTEEACQARCAGGTFVTSSAAPDQLENR 116
+W ++ S+ ++ G C T + S D LEN
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGV-----------RCY-EAYPNTSLPPSILEDSLENN 331
Query: 117 IAVASP-------PRFH--------NYSEPTVEAEE-----G--NFVTLRCIAIGYPIPV 154
V SP + N P + E G N V ++ G P
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV----VS-GPPQ-- 384
Query: 155 YTWSKGEVSRKFFLRGFISANDLCFLESESGPCTQ-QEAAWYFDR-----NSF--ITMPE 206
S L G L P Q + +R N F + P
Sbjct: 385 ---S---------LYGLNLT-----LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 207 ----LTP-----NTFLFQWTCVISGKNARCRCFNPCQNQDPQCPSN--TRCAVD-LVRNP 254
L P N L + + K+ + ++ D + S + VD ++R P
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
>1udk_A Nawaprin; antiparallel beta-sheet, spiral backbone configuration,
unknown function; NMR {Naja nigricollis} SCOP: g.3.14.1
Length = 51
Score = 39.5 bits (92), Expect = 9e-05
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 270 KEGECRPQPQN------VCADNCKDDADCTGQAKCCPNDCG 304
K G C P +C C D+ C KCC N CG
Sbjct: 3 KSGSC-PDMSMPIPPLGICKTLCNSDSGCPNVQKCCKNGCG 42
>1fle_I Elafin; hydrolase, serine protease, 3D-structure, zymogen,
pancreas, signal, complex (serine protease/inhibitor);
1.90A {Homo sapiens} SCOP: g.3.14.1 PDB: 2rel_A
Length = 57
Score = 39.6 bits (92), Expect = 1e-04
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 270 KEGECRPQPQNVCA-----DNCKDDADCTGQAKCCPNDCGYSCSN 309
K G C P CA + C D DC G KCC CG +C
Sbjct: 12 KPGSC-PIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFV 55
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 42.2 bits (98), Expect = 2e-04
Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 346 SEPTVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQ 404
EP V G L C W + S+ T VL +
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSD---TGRSVLTVRNASLS 69
Query: 405 DAGIYVCVAANGIGDPIRKEFNVIVRGNYEQW 436
AG VCV + G G + ++V Q
Sbjct: 70 AAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQL 100
Score = 28.7 bits (63), Expect = 4.6
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 118 AVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVS 163
++ P EP V G L C W + S
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS 48
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 40.2 bits (94), Expect = 2e-04
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 11/83 (13%)
Query: 340 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGH-------YKLTL 392
+ V EG L C WS D +L
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR 65
Query: 393 DG----VLQIVGLVRQDAGIYVC 411
+ + + D G Y C
Sbjct: 66 ASWHELSISVSDVSLSDEGQYTC 88
Score = 28.7 bits (64), Expect = 2.1
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 123 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
+ V EG L C WS
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSN 42
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.2 bits (93), Expect = 3e-04
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 15/116 (12%)
Query: 330 TPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPI---PVYTWSKGE----VSID 382
+ + P +V E G + G + P W KG+ S
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61
Query: 383 GSDGHYKLTLDGV-------LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
G+ +K + + L I +V D G Y FN+ V
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC-DSCGFNIDVEA 116
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.4 bits (98), Expect = 4e-04
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 340 PRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIV 399
P S + G L+C + W + Y L L I
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIF 591
Query: 400 GLVRQDAGIYVCVA 413
L D+G+Y C++
Sbjct: 592 NLSEGDSGVYQCLS 605
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 41.3 bits (96), Expect = 4e-04
Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 16/95 (16%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHY------- 388
P E+ C + G P P TW + ++
Sbjct: 116 PEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTS 175
Query: 389 --------KLTLDGVLQIVGLVRQDAGIYVCVAAN 415
L+L L + + C A
Sbjct: 176 RTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHY 210
Score = 40.6 bits (94), Expect = 8e-04
Identities = 21/106 (19%), Positives = 26/106 (24%), Gaps = 23/106 (21%)
Query: 347 EPTVEAEEGNFVTLRCIAIGYPIP-VYTWSKGE----------------------VSIDG 383
P VE G V L C G + W + G
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 384 SDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
Y+L G L + D YVCV G + V
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Score = 35.2 bits (80), Expect = 0.046
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 121 SPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKG 160
E+ C + G P P TW +
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN 157
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 40.6 bits (95), Expect = 4e-04
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQD 405
S+P + E N TL C + +G+ L +
Sbjct: 107 SKPMIYWECSN-ATLTCEVLEGTDVELKLYQGKEH---------LRSLRQKTMSYQWTNL 156
Query: 406 AGIYVCVAANGIG 418
+ C A N +
Sbjct: 157 RAPFKCKAVNRVS 169
Score = 39.5 bits (92), Expect = 0.001
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 342 FHNYSEPTVEAEEGNFVTLRC-IAIGYPIPVYTWSKG------EVSIDGS----DGHYK- 389
F + S P V A G+ VTL TW E +G + +K
Sbjct: 1 FQDQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKD 60
Query: 390 -LTLD---GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ LD G L+I + ++D G Y + D + + + V
Sbjct: 61 RVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED--QWKITMEV 102
Score = 29.1 bits (65), Expect = 3.0
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGE 161
S+P + E N TL C + +G+
Sbjct: 107 SKPMIYWECSN-ATLTCEVLEGTDVELKLYQGK 138
>2z7f_I Antileukoproteinase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens}
Length = 50
Score = 37.6 bits (87), Expect = 4e-04
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 270 KEGECRPQPQNVCA-----DNCKDDADCTGQAKCCPNDCGYSC 307
K G+C P C + C+ D C KCC CG SC
Sbjct: 3 KPGKC-PVTYGQCLMLNPPNFCEMDGQCKRDLKCCMGMCGKSC 44
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 41.8 bits (97), Expect = 4e-04
Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 16/121 (13%)
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAI-GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVL 396
P + + + G+ VTL C + W + + + + L
Sbjct: 5 RCPAQEV-ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW-AGMGRRL 62
Query: 397 QIVGLVRQDAGIYVCVAANG--------IGDPIRKEFNVIVRGNYE-----QWYYDRDTD 443
+ + D+G Y C A + P + R + +W
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPS 122
Query: 444 S 444
Sbjct: 123 L 123
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 39.1 bits (91), Expect = 6e-04
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 346 SEPTVEAEEGNFVTLRC-IAIGYPIPVYTWSKGE----------VSIDGSDGHYK--LTL 392
S P + A G+ VTL+ P TW + + + +K + L
Sbjct: 9 SIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYL 68
Query: 393 D---GVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ G L I + ++D G Y + + + V
Sbjct: 69 EENNGALHISNVRKEDKGTYYMRVLRETEN--ELKITLEVF 107
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.5 bits (96), Expect = 8e-04
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 2/107 (1%)
Query: 307 CSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG 366
C + + + + P+ V + L C
Sbjct: 467 CGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES 526
Query: 367 YPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVA 413
Y+W E + + + + +L I L Q G Y C A
Sbjct: 527 -RHATYSWRHKENVEQSCEPGH-QSPNCILFIENLTAQQYGHYFCEA 571
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 39.6 bits (92), Expect = 0.001
Identities = 11/122 (9%), Positives = 22/122 (18%), Gaps = 23/122 (18%)
Query: 300 PNDCG-YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFV 358
D G Y + ++ + + + +
Sbjct: 79 MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI-----------QVTNHSQLFQNMTCEL 127
Query: 359 TLRCIAI-GYPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANG 416
L C + W G + Y C+A N
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDP---------RISSEQDYTCIAENA 178
Query: 417 IG 418
+
Sbjct: 179 VS 180
Score = 38.0 bits (88), Expect = 0.003
Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 22/124 (17%)
Query: 349 TVEAEEGNFVTLRC-IAIGYPIPVYTWSKGEVSI-----------------DGSDGHYKL 390
V G VTL G + TW E S+
Sbjct: 7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF 66
Query: 391 TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNYEQWYYDRDTDSCQPFQY 450
T LQ+ L +D G Y + + + Q + T+ Q FQ
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTK-TSAKLSSYTLR---ILRQLRNIQVTNHSQLFQN 122
Query: 451 GGCQ 454
C+
Sbjct: 123 MTCE 126
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 39.5 bits (91), Expect = 0.001
Identities = 14/101 (13%), Positives = 20/101 (19%), Gaps = 8/101 (7%)
Query: 321 SPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVS 380
A S + V L C G W K
Sbjct: 88 DAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSI 144
Query: 381 IDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPI 421
I + + + G Y C A +P+
Sbjct: 145 ISPLNATKN-----TWNLGNNAKDPRGTYQCQGAKETSNPL 180
Score = 38.3 bits (88), Expect = 0.003
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAA 414
G V L C W K + + L L ++ +D+G YVC
Sbjct: 14 GTSVELTCPL--DSDENLKWEKNGQELPQKHDKH-LVLQDFSEV-----EDSGYYVCYTP 65
Query: 415 NG 416
Sbjct: 66 AS 67
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 38.0 bits (88), Expect = 0.001
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 23/107 (21%)
Query: 349 TVEAEEGNFVTLRC-IAIGYPIPVYTW-------------SKGEVSIDGSDGHYK----- 389
TV G VT I + + W S+ + + +Y
Sbjct: 8 TVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHA 67
Query: 390 LTLDGVLQIVGLVRQDAGIYVC-VAANGIGDPIRKEFNVIVRGNYEQ 435
L + L I L +DAG Y + K +N+ + Y +
Sbjct: 68 LGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI---YRR 111
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 38.8 bits (90), Expect = 0.002
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 349 TVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSI------------DGSDGHYKLTLDGVL 396
+ VT P+ W K + + + Y T+ G L
Sbjct: 4 QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 397 QIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
I L D Y + N +F + V
Sbjct: 63 TIYNLTSSDEDEYEMESPNITD---TMKFFLYV 92
Score = 34.5 bits (79), Expect = 0.039
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQD 405
S+P + E N TL C + +G+ + +
Sbjct: 97 SKPMIYWECSN-ATLTCEVLEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNL 146
Query: 406 AGIYVCVAANGIG 418
+ C A N +
Sbjct: 147 RAPFKCKAVNRVS 159
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 37.1 bits (86), Expect = 0.003
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 23/105 (21%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYT--WSKGE--------VSIDGSDGHYKLTLDG- 394
+E E +EG + ++C W + + G
Sbjct: 10 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGR 69
Query: 395 ------------VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427
+++V L +D+G+Y CV +P +
Sbjct: 70 IILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRI 114
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.8 bits (85), Expect = 0.004
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 23/108 (21%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYT-WSKGE----------VSIDGS------DGHY 388
S V+ G+ VTL C Y T W +G+ + +G Y
Sbjct: 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 389 KLTLDGV-----LQIVGLVRQDAGIYVC-VAANGIGDPIRKEFNVIVR 430
L L I V D+G+Y C V G + + F++ V+
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK 110
Score = 27.2 bits (60), Expect = 6.5
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 129 SEPTVEAEEGNFVTLRCIAIGYPIPVYT-WSKGEVSRKFFLRGFISAN 175
S V+ G+ VTL C Y T W +G+ I N
Sbjct: 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTN 50
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 35.8 bits (83), Expect = 0.006
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYT--W-----SKGEVSIDGSDGHYKLTLDGV--- 395
+ +V E G +T+ C+ + + W +G G Y T++
Sbjct: 6 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKS 65
Query: 396 --LQIVGLVRQDAGIYVCVAANGIGDP 420
L+I L +D G Y C G
Sbjct: 66 FSLRINDLTVEDGGTYRCGLGVAGGYC 92
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.8 bits (87), Expect = 0.006
Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 13/102 (12%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVYTWSKGEVSIDGSDGHYKLTLDGV 395
P V+ RC++ G P TW + + L G
Sbjct: 117 PQNT----AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTS-QVPGFLSGT 171
Query: 396 LQIVGLV-----RQDAG-IYVCVAAN-GIGDPIRKEFNVIVR 430
+ + L Q G C + P ++ V
Sbjct: 172 VTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213
Score = 31.2 bits (70), Expect = 0.80
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 103 FVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVYTWSKG 160
FVT ++ + V + P+ V+ RC++ G P TW
Sbjct: 97 FVTFPQGSRSVDIWLRVLAKPQNT-AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD 154
Score = 30.4 bits (68), Expect = 1.2
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 25/108 (23%)
Query: 347 EPTVEAEEGNFVTLRCIAIGY-------------------PIPVYTWSKGEVSIDGSDGH 387
V G+ VTL C + V+ ++G +
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 388 YKLTLDGV------LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ G L++ GL +D G Y C+ + + V
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 37.3 bits (86), Expect = 0.008
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 14/117 (11%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
Y C + + T P + E N + C
Sbjct: 80 YECV----VLKYEKDAFKREHLAEVTLSVKADFPTPSISD-----FEIPTSNIRRIICST 130
Query: 365 IG-YPIPVYTWSK-GEVSIDGSDGHYKLTLDGVLQIVGLVR---QDAGIYVCVAANG 416
G +P P +W + GE + + + + + ++C+ G
Sbjct: 131 SGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
Score = 32.7 bits (74), Expect = 0.24
Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 17/99 (17%)
Query: 349 TVEAEEGNFVTLRCIAIG----YPIPVYTWSKGEVSI-------DGSDGHYK----LTLD 393
V E TL C W K + + YK +
Sbjct: 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62
Query: 394 GV--LQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVR 430
+ I+ L D G Y CV D ++E V
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVT 101
Score = 31.5 bits (71), Expect = 0.57
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 117 IAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVYTWSKG 160
+ ++ F S E N + C G +P P +W +
Sbjct: 100 VTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLEN 144
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 37.6 bits (87), Expect = 0.008
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 15/120 (12%)
Query: 321 SPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGY-PIPV-YTWSKGE 378
SP + ++ + P S P A + V+ C + G+ P + W K
Sbjct: 98 SPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNG 157
Query: 379 VSI---------DGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGI--GDPIRKEFNV 427
+ G Y ++ ++V +C A+ GDP+R N+
Sbjct: 158 NELSDFQTNVDPVGESVSY--SIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANL 215
Score = 28.0 bits (62), Expect = 8.5
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 15/122 (12%)
Query: 325 PVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPV-YTWSKGEVSID 382
T P ++ N V + C YP + TW +
Sbjct: 207 DPLRGTANLSETIRVPPTLEVTQQ--PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSR 264
Query: 383 G---------SDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNY 433
DG Y L + +D C + + K ++ V +
Sbjct: 265 TETASTVTENKDGTY--NWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSTRH 322
Query: 434 EQ 435
Sbjct: 323 HH 324
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 36.3 bits (83), Expect = 0.009
Identities = 14/100 (14%), Positives = 22/100 (22%), Gaps = 16/100 (16%)
Query: 325 PVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS 384
+ S P + + G V L+C + WS
Sbjct: 28 DKAMADINLSQDDSQPWTSDET-----VVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYF 82
Query: 385 DGH-------YKLTLDG----VLQIVGLVRQDAGIYVCVA 413
+L + I + D G Y C
Sbjct: 83 GEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 34.8 bits (80), Expect = 0.015
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 23/105 (21%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYT--WSKGE--------VSIDGSDGHYKLTLDG- 394
+E E +EG + ++C W + + G
Sbjct: 5 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGR 64
Query: 395 ------------VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427
+++V L +D+G+Y CV +P +
Sbjct: 65 IILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRI 109
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 34.6 bits (79), Expect = 0.020
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 350 VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDG---------HYKLTLDGV---LQ 397
V+ +G + I TW + ++ Y++ G+ L
Sbjct: 18 VQVYDGEDAVFSL-DLSTIIQG-TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75
Query: 398 IVGLVRQDAGIYVCVAANGI 417
+ + QD+G V + G+
Sbjct: 76 LHAVKHQDSGALVGFSCPGV 95
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 35.8 bits (82), Expect = 0.025
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 349 TVEAEEGNFVTLRCIAIG-YPIPVYTWSKGE-VSIDGSDGHYKLTLDGVLQIVGLVR--- 403
V+ + + L C + G YP P WS + +I + G+ + V
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG 186
Query: 404 QDAGIYVCVAANGIGDPIRKEFNVIV 429
C + + + K ++ +
Sbjct: 187 SSGEGVSCTIRSSLL-GLEKTASISI 211
Score = 31.6 bits (71), Expect = 0.51
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 25/99 (25%)
Query: 346 SEPTVEAEEGNFVTLRCIAI---------------GYPIPVYTWSKGEVSIDGSDGHYK- 389
+ A G L C V ++ G+ D Y+
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69
Query: 390 ---LTLDGV------LQIVGLVRQDAGIYVCVAANGIGD 419
+ DG+ L+I + D+G Y+C +G
Sbjct: 70 RTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108
Score = 29.7 bits (66), Expect = 2.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 132 TVEAEEGNFVTLRCIAIG-YPIPVYTWSKGE 161
V+ + + L C + G YP P WS +
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNK 157
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 33.4 bits (76), Expect = 0.057
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 24/109 (22%)
Query: 346 SEPTVEAEEGNFVTLRCI--AIGYPIPVYTWSKGE----------VSIDGS------DGH 387
SE T+ G VTL C + W KG + DG+
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 388 YKLTLDGV-----LQIVGLVRQDAGIYVC-VAANGIGDPIRKEFNVIVR 430
Y L L I R D+G+Y C + G + ++K + +R
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELR 110
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 33.1 bits (76), Expect = 0.064
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 346 SEPTVEAEEGNFVTLRCIAIGYPIPVYTWS-------KGEVSIDGSDGHYKLTLDGV--- 395
+ + E G +T+ C+ + T G Y T++
Sbjct: 6 TPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKS 65
Query: 396 --LQIVGLVRQDAGIYVCVAANGIGD 419
L+I L +D+G Y C + G
Sbjct: 66 FSLRINDLTVKDSGTYRCKPESRYGS 91
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 32.7 bits (74), Expect = 0.069
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 373 TWSKGEVSI----DGS---DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPI-RKE 424
W +G + G +++ +G L+I L R D+G Y + G I K
Sbjct: 31 RWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILDKA 90
Query: 425 FNVIV 429
++ +
Sbjct: 91 LDLRI 95
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 33.3 bits (76), Expect = 0.076
Identities = 19/116 (16%), Positives = 29/116 (25%), Gaps = 31/116 (26%)
Query: 346 SEPTVEAEEGNFVTLRCI--------------------AIGYPIPVYTWSKGEVSIDGSD 385
E +E +G L C V G+ D
Sbjct: 11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 386 GHYK----LTLDGV------LQIVGLVRQDAGIYVCVAANGIGDPIRK-EFNVIVR 430
K T + + + + L D G Y C G +K V+V+
Sbjct: 71 PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 32.6 bits (74), Expect = 0.11
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 23/89 (25%)
Query: 346 SEPTVEAEEGNFVTLRCI--AIGYPIPVYTWSKGE----------VSIDGS------DGH 387
S V+ G+ VTL CI I W GE + +G +
Sbjct: 3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62
Query: 388 YKLTLDGV-----LQIVGLVRQDAGIYVC 411
Y+L + L I V D G Y C
Sbjct: 63 YQLKGNISEGNVSLTIENTVVGDGGPYCC 91
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 33.7 bits (77), Expect = 0.11
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 12/95 (12%)
Query: 325 PVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS 384
T + P + G ++L C + P ++ +K +G
Sbjct: 92 YSDTLELVVTGLYGKPFLSADRGLVLM--PGENISLTCSSAHIPFDRFSLAK-----EGE 144
Query: 385 DGHYKLTLDGVLQ----IVGLVRQDAGIYVCVAAN 415
+ G + + +GIY C
Sbjct: 145 LSLPQ-HQSGEHPANFSLGPVDLNVSGIYRCYGWY 178
Score = 32.2 bits (73), Expect = 0.39
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 11/107 (10%)
Query: 60 YVLTWY-YDSLEARCRQFYYGGCGGNQNNF----MTEE-ACQARCAGGTFVTSSAAPDQL 113
L + R+ + F M A + +C D L
Sbjct: 39 TQLMIIKNSTYREIGRRLKFWN--ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL 96
Query: 114 ENRIAVAS-PPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSK 159
E + P + G ++L C + P ++ +K
Sbjct: 97 ELVVTGLYGKPFLSADRGLVLM--PGENISLTCSSAHIPFDRFSLAK 141
Score = 28.7 bits (64), Expect = 4.1
Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 8/83 (9%)
Query: 344 NYSEPTVEAE------EGNFVTLRC-IAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD-GV 395
++ P + A+ V ++C + K +
Sbjct: 6 DFPMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65
Query: 396 LQIVGLVRQDAGIYVCVAANGIG 418
I + AG Y C G
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHY 88
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 33.7 bits (76), Expect = 0.13
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 4/94 (4%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIP--VYTWSKGEVSIDGS 384
++ + P + G +TLRC G P +GE +
Sbjct: 74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE 133
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
+ + ++ + C +
Sbjct: 134 PAVGEPA-EVTTTVLVRRDHHGANFSCRTELDLR 166
Score = 32.5 bits (73), Expect = 0.31
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPI 152
C + C G + + V P + G +TLRC G P
Sbjct: 65 CYSNCPDGQSTAKT--------FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Query: 153 P--VYTWSKGE 161
+GE
Sbjct: 117 ANLTVVLLRGE 127
Score = 32.5 bits (73), Expect = 0.39
Identities = 15/111 (13%), Positives = 25/111 (22%), Gaps = 7/111 (6%)
Query: 328 TSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVYTWSK----GEVSID 382
TS PY P E T+ C G +P+ ++
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235
Query: 383 GSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNY 433
+ G+ + V + C G V +
Sbjct: 236 VTYGNDSFSA-KASVSVTAEDEGTQRLTCAVILG-NQSQETLQTVTIYSFP 284
Score = 28.3 bits (62), Expect = 7.2
Identities = 7/66 (10%), Positives = 13/66 (19%), Gaps = 1/66 (1%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPI 152
C+ ++ P E T+ C G +P+
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPV 218
Query: 153 PVYTWS 158
Sbjct: 219 SEAQVH 224
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 31.4 bits (71), Expect = 0.22
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 27/108 (25%)
Query: 349 TVEAEEGNFVTLRCI----AIGYPIPVYTWSKGEVSI----------------DGSDGHY 388
+ E G L C G +P+ W KG Y
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMC-WGKGFCPWSQCTNELLRTDERNVTYQKSSRY 61
Query: 389 KLTLDGV-----LQIVGLVRQDAGIYVC-VAANGIGDPIRKEFNVIVR 430
+L D L I + D G Y C + G+ + + E + ++
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.5 bits (71), Expect = 0.23
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 20/99 (20%)
Query: 349 TVEAEEGNFVTLRCIAIG--YPIPVYTWSKGE--------VSIDGS-----DGHYKLTLD 393
+++ G +T+RC W K V+ + + D
Sbjct: 19 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDD 78
Query: 394 G-----VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427
+ + L +D+G Y C + + K
Sbjct: 79 PDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRF 117
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.5 bits (71), Expect = 0.25
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 21/92 (22%)
Query: 348 PTVEAEEGNFVTLRC----IAIGYPIPVYTWSKGEVS----------------IDGSDGH 387
P + EG+ L C I TW + EV +
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74
Query: 388 YKLTLDGVLQIVGLVRQDAGIYVC-VAANGIG 418
+ L I + DA IYVC V G+G
Sbjct: 75 FLHDHQAELHIRDVRGHDASIYVCRVEVLGLG 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.30
Identities = 44/325 (13%), Positives = 79/325 (24%), Gaps = 100/325 (30%)
Query: 11 KDICLQPAVIGDCANYVLTWYY-DSNTSCFPQFIAKDICLQPAVIGDCANYVLTWYYDSL 69
I + + L W +F+ + L+ NY + +
Sbjct: 52 DHIIMSKDAVS--GTLRLFWTLLSKQEEMVQKFV--EEVLRI-------NY--KFLMSPI 98
Query: 70 EARCRQFYYGGCGGNQNNFMTEEACQARCAGGTFVTSSAAPDQLENRIAVASP---PRFH 126
+ R Q + MT + R D+L N V + R
Sbjct: 99 KTEQR----------QPSMMTRMYIEQR-------------DRLYNDNQVFAKYNVSRLQ 135
Query: 127 NYSEPT---VEAEEGNFVTLR--------CIAI----------GYPIPVYTW-SKGEVSR 164
Y + +E V + +A+ ++ W + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNS 194
Query: 165 KFFLRGFISANDLCFL-------ESESGPCTQQEAAWYFDRNSFITMPELTPNTFLFQWT 217
+ L + S+ + + + N L
Sbjct: 195 PETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---- 248
Query: 218 CVISG-KNARC-RCFNPCQNQDPQCPS--NTR--CAVDLVRNPETRETQYIAVCRPLYK- 270
V+ +NA+ F + C TR D + T L
Sbjct: 249 -VLLNVQNAKAWNAF------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 271 EGE--------CRPQ--PQNVCADN 285
E + CRPQ P+ V N
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTN 326
Score = 29.1 bits (64), Expect = 5.6
Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 24/124 (19%)
Query: 167 FLRGFISANDLC--FLESESGPCTQQEAAWYFDRNSFITMPELTPNTFLFQWTCVISGKN 224
F F+ D C + +++E D I + T WT + +
Sbjct: 25 FEDAFVDNFD-CKDVQDMPKSILSKEE----IDH--IIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 225 ARCRCFNPCQNQDPQ---CPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGE-------C 274
+ + + P T R P YI LY + +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQ-----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 275 RPQP 278
R QP
Sbjct: 133 RLQP 136
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 30.9 bits (69), Expect = 0.32
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 355 GNFVTLRCIAIGYPIPVYTWSKGEVSIDGS-DGHYKLTLDGVLQIVGLVR-QDAGIYVCV 412
G V L C YP W + +I G D + + L + + +G YVC
Sbjct: 21 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 413 AANGIGD 419
+
Sbjct: 79 PRGSKPE 85
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 32.1 bits (72), Expect = 0.33
Identities = 10/118 (8%), Positives = 19/118 (16%), Gaps = 17/118 (14%)
Query: 305 YSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIA 364
Y + + + E G L C
Sbjct: 97 YFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPL---------ESGRPTRLSCSL 147
Query: 365 I----GYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIG 418
P ++W+ +S + L + C
Sbjct: 148 PGSCEAGPPLTFSWTGNALSPLDPETTRS----SELTLTPRPEDHGTNLTCQMKRQGA 201
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 32.7 bits (73), Expect = 0.35
Identities = 32/229 (13%), Positives = 54/229 (23%), Gaps = 28/229 (12%)
Query: 325 PVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGS 384
P+ P P+ S E V+A +A P P T D
Sbjct: 39 PLDGCGPLHPSWVSLMPPKQVPETVVDAACMRAPVPLAMAYAPPAPSATGGLR---TDFV 95
Query: 385 DGHYKLTLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRGNYEQWYYDRDTDS 444
++ L I G+ D+G+Y + I DP R+ +V++
Sbjct: 96 WQERAAVVNRSLVIHGVRETDSGLYTLSVGD-IKDPARQVASVVLVVQPAPVP---TPPP 151
Query: 445 CQPFQYGGCQGNHNRFNDQWSCQKRCVQNIPPPDPAQTPSTTLAPRQEAAR--------- 495
+ + + PPP P ++ +
Sbjct: 152 TPADYDEDDNDEGEDESLAGTPASGTPRLPPPPAPPRSWPSAPEVSHVRGVTVRMETPEA 211
Query: 496 -----NDLCFLESESGPCTQQEAA------WYFDRNTYRCQSF-IYGGC 532
+ + W C IY C
Sbjct: 212 ILFSPGETFSTNVSIHAIAHDDQTYSMDVVWLRFDVPTSCAEMRIYESC 260
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 32.0 bits (72), Expect = 0.39
Identities = 15/71 (21%), Positives = 16/71 (22%), Gaps = 11/71 (15%)
Query: 94 CQARCAGGTFVTSSAAPDQLENRIAVASPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPI 152
C RCA T I P G TL C G P
Sbjct: 68 CFFRCARRTLQARG--------LIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR 119
Query: 153 P--VYTWSKGE 161
T +G
Sbjct: 120 ASLTLTLLRGA 130
Score = 28.9 bits (64), Expect = 3.5
Identities = 9/84 (10%), Positives = 15/84 (17%), Gaps = 10/84 (11%)
Query: 348 PTVEAEEGNFVTLRCIAIGYPIPVYTW--SKGEVSIDGSDGHYKLTLDGVLQIVGLVRQD 405
E G + L C S L +R+
Sbjct: 10 RVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVD-------IREP 62
Query: 406 AGIYVCVAANGIGDPIRKEFNVIV 429
VC ++ +
Sbjct: 63 ETQPVCFFRCA-RRTLQARGLIRT 85
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 31.9 bits (72), Expect = 0.69
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 227 CRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQNVCADNC 286
C C +P Q C + T C L + + C+ ECR D+C
Sbjct: 231 CDCGSPADCQSACCNATT-CK--LQHEAQCDSEECCEKCKFKGARAECRAA-----KDDC 282
Query: 287 KDDADCTGQAKCCPNDC----GYSCSN 309
CTGQ+ CP D G C N
Sbjct: 283 DLPELCTGQSAECPTDVFQRNGLPCQN 309
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 31.5 bits (71), Expect = 0.82
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 227 CRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQNVCADNC 286
C C +P +DP C + T L + + E CR ECR D C
Sbjct: 234 CDCGSPRTCRDPCCDATTCK---LRQGAQCAEGLCCDQCRFKGAGTECRAA-----KDEC 285
Query: 287 KDDADCTGQAKCCPND---CGYSCSN 309
CTG++ C + G C N
Sbjct: 286 DMADVCTGRSAECTDRFQRNGQPCKN 311
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 30.3 bits (68), Expect = 0.86
Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 25/99 (25%)
Query: 346 SEPTVEAEEGNFVTLRC----------IAI-----GYPIPVYTWSKGEVSIDGSDGHYK- 389
+ A G+ L C + + + V+ + G+ Y+
Sbjct: 12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 390 ---------LTLDGVLQIVGLVRQDAGIYVCVAANGIGD 419
L+I + D G Y C +
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQ 110
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 31.4 bits (70), Expect = 0.89
Identities = 7/62 (11%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 335 NIPSPPRFHNYSEPT-VEAEEGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLD 393
I P P G+ +T C++ + I + + +
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIR 251
Query: 394 GV 395
+
Sbjct: 252 NI 253
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.9 bits (67), Expect = 1.0
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 349 TVEAEEGNFVTLRCI-AIGYPIPVYTWSKGE--------VSIDGS-----DGHYKLTLDG 394
TV E +T++C+ G+ + W +G V GS + +
Sbjct: 11 TVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ 70
Query: 395 -----VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+ + L++ DA Y C D V +
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGIEKTGNDLG-VTVQVTI 109
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 30.2 bits (68), Expect = 1.3
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 344 NYSEPTVEAE------EGNFVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGVLQ 397
+P+++A VTLRC P V + + VL
Sbjct: 5 PLPKPSLQALPSSLVPLEKPVTLRC---QGPPGVDLY------RLEKLSSSRYQDQAVLF 55
Query: 398 IVGLVRQDAGIYVCVAANGIG 418
I + R AG Y C NG
Sbjct: 56 IPAMKRSLAGRYRCSYQNGSL 76
Score = 28.6 bits (64), Expect = 4.3
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Query: 311 FDITTTTTTVSPAYPVYTSTPYTPNIPSPPR----FHNYSEPTVEA------EEGNFVTL 360
I +++ Y ++PS +++P++ A G VTL
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTL 113
Query: 361 RCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQDAGIYVCVAANG 416
+C + K +G YK I+ + +G Y C + +
Sbjct: 114 QCQTRYGF-DQFALYK-----EGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 31.0 bits (69), Expect = 1.4
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 219 VISGKNARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQP 278
++ K+ C + C + C ++ + C
Sbjct: 145 IVLNKDDNEECGDICPGTAKGKTN---CPATVINGQFVERCWTHSHC------------- 188
Query: 279 QNVCADNCKDDADCTGQAKCCPNDCGYSCS 308
Q VC CK CT + CC ++C +CS
Sbjct: 189 QKVCPTICKSHG-CTAEGLCCHSECLGNCS 217
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 30.6 bits (69), Expect = 1.6
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 17/124 (13%)
Query: 300 PNDCG-YSC--SNLFDITTTTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGN 356
G Y+C S+ T + +P + T P++ + P P V+ G
Sbjct: 83 TAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG------PLVK--SGE 134
Query: 357 FVTLRCIAIGYPIPVYTWSKGEVSIDGSDGHYKLTLDGV----LQIVGLVRQDAGIYVCV 412
V L+C + + K E DGV I ++ AG Y C
Sbjct: 135 RVILQCWSDIMFE-HFFLHK-EGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCY 192
Query: 413 AANG 416
+
Sbjct: 193 GSVT 196
>1ncq_C Coat protein VP3; HRV, pleconaril, icosahedral virus; HET: W11;
2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_3*
1hrv_3* 1hri_3* 1na1_C* 1k5m_C* 1r08_3* 1r09_3* 1rmu_3
1ruc_3* 1rud_3* 1rue_3* 1ruf_3 1rug_3* 1ruh_3* 1rui_3*
1ruj_3 1rvf_3 1vrh_3* 2hwb_3* 2hwc_3* ...
Length = 236
Score = 30.0 bits (67), Expect = 1.7
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 317 TTTVSPAYPVYTSTPYTPNIPSPPRFHNYSE----PTVEAEEGNFVTLRCIAIGYPIPVY 372
TT + + TP I P + HN E T+ N + Y IP+
Sbjct: 15 TTDDRQSPSALPNYEPTPRIHIPGKVHNLLEIIQVDTL--IPMNNTHTKDEVNSYLIPLN 72
Query: 373 TWSKGE----VSIDGSDGHYKLTLDGVL 396
+ E ++ DG +K TL G +
Sbjct: 73 ANRQNEQVFGTNLFIGDGVFKTTLLGEI 100
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 29.9 bits (68), Expect = 2.4
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 582 GNSAVNSTMEAVRAITTGSIPGRNVRRCVARRIR 615
GN+ S +RA+ T + R+ RR + +
Sbjct: 351 GNTGNQSATLIIRALATRDLDLRDWRRVFLKEMG 384
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 28.6 bits (64), Expect = 2.4
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 25/110 (22%)
Query: 347 EPTVEAEEGNFVTLRCIAIGYPIPVY-----TWSKGEVSIDGSDGHYKL----------- 390
V G+ VTL C + V TW++ S + H
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 391 ---------TLDGVLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNVIVRG 431
+ L++ GL +D G Y C+ + + V
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 30.0 bits (67), Expect = 2.4
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 250 LVRNPETRETQYIAVCRPLYKEG--ECRPQPQNVCADNCKDDADCT--GQAKCCPNDCGY 305
+ P ++ VC E EC C + C D A C A+C C Y
Sbjct: 201 IFNPPLRKDIVSPPVCGNEIWEEGEECDCGSPANCQNPCCDAATCKLKPGAECGNGLCCY 260
Query: 306 SC 307
C
Sbjct: 261 QC 262
Score = 28.4 bits (63), Expect = 7.6
Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 227 CRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQNVCADNC 286
C C +P Q+P C + T C L E C+ CR D C
Sbjct: 227 CDCGSPANCQNPCCDAAT-CK--LKPGAECGNGLCCYQCKIKTAGTVCRRA-----RDEC 278
Query: 287 KDDADCTGQAKCCPNDC----GYSCSN 309
CTGQ+ CP D G C N
Sbjct: 279 DVPEHCTGQSAECPRDQLQQNGKPCQN 305
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I
complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1de4_A*
Length = 275
Score = 29.5 bits (67), Expect = 2.6
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 358 VTLRCIAIG-YPIPVY-TWSKGEVSIDGSDGHYKLTL---DGVLQI---VGLVRQDAGIY 409
TLRC A+ YP + W K + +D + K L DG Q + + + Y
Sbjct: 199 TTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRY 258
Query: 410 VCV 412
C
Sbjct: 259 TCQ 261
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 29.8 bits (67), Expect = 3.0
Identities = 19/115 (16%), Positives = 24/115 (20%), Gaps = 7/115 (6%)
Query: 199 NSFITMPELTPNTFLFQWTCVISGKNARCRCFNPCQNQDPQCPSNTRC--AVDLVRNPET 256
N F E P + + A RC C RC + V E
Sbjct: 7 NIFGNASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYHRCDGVTNTVTPEEV 66
Query: 257 RETQYIAVCRPLYKEGECRPQPQNVCADN-----CKDDADCTGQAKCCPNDCGYS 306
T + EC C P+ CG
Sbjct: 67 INTTGEGIFDIRENANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSFCGIR 121
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 29.6 bits (66), Expect = 3.0
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 316 TTTTVSPAYPVYTSTPYTPNIPSPPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVY-T 373
T T P+ P P + + L C G P +
Sbjct: 377 TCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLM 436
Query: 374 WSKGEVSIDGSDG 386
W + + ++ S
Sbjct: 437 WLEDQREVNTSGF 449
>2wzr_3 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase,
nucleotidyltransferase, HOST cytoplasmic vesicle, capsid
protein; 3.00A {Foot-and-mouth disease virus}
Length = 221
Score = 29.3 bits (65), Expect = 3.1
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 317 TTTVSPAYPVYTSTPYTPNIPSPPRFHNYSE 347
T + PVY P RF N +
Sbjct: 16 NTDPKTSDPVYGHVYNPARTLYPGRFTNLLD 46
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 27.9 bits (62), Expect = 4.1
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 346 SEP-TVEAEEGNFVTLRCI-AIGYPIPVYTWSKGE--------VSIDGS----DGHYKLT 391
S+ TV G ++++C + W + V GS +G +
Sbjct: 1 SKARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIR 60
Query: 392 LDG-----VLQIVGLVRQDAGIYVC-VAANGIGDPIRKEFNVIV 429
+ + L +DAG Y C V + D V V
Sbjct: 61 DSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEV 104
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 29.1 bits (64), Expect = 4.5
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 337 PSPPRFHNYSEPTVEAEEGNFVTLRCIAIGY-PIPVYTWSKGEVSIDGSDGHYKLTLD-- 393
P H VE G F T +C AIG W +G D K+T
Sbjct: 161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 394 --GVLQIVGLVRQDAGIYVCVAANGIG 418
+V ++DAG Y C+ G
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGG 247
>1tme_3 Theiler'S murine encephalomyelitis virus (subunit VP3); icosahedral
virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_3
Length = 236
Score = 28.8 bits (64), Expect = 4.6
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 317 TTTVSPAYPVYTSTPYTPNIPSPPRFHNYSE 347
+T P+Y T TPN F + E
Sbjct: 16 STNPDTTVPIYGKTISTPNDYMCGEFSDLLE 46
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 28.0 bits (62), Expect = 4.7
Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 23/97 (23%)
Query: 346 SEPTVEAEEGNFVTLRCI---AIGYPIPVYTWSKGEVS------IDGSDGHYKL------ 390
+ +V V ++CI GY + W S + S G +
Sbjct: 7 TPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRG 66
Query: 391 --------TLDGVLQIVGLVRQDAGIYVCVAANGIGD 419
D LQI L D Y C D
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPD 103
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 29.2 bits (64), Expect = 4.8
Identities = 28/157 (17%), Positives = 36/157 (22%), Gaps = 23/157 (14%)
Query: 221 SGKNARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGEC---RPQ 277
CRC D C S + C D + +C + EC R
Sbjct: 32 EVGPPDCRC-------DNLCKSYSSCCHD-----------FDELCLKTARGWECTKDRCG 73
Query: 278 PQNVCADNCKDDADCTGQAKCCPNDCGYSCSNLFDITTTTTTVSPAYPVYTSTPYTPNIP 337
+ C DC + CC N + + I
Sbjct: 74 EVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIF 133
Query: 338 SPPRFHNYSEPTVEAEEGNFVTLRCIAIGYP--IPVY 372
S F N LR P PVY
Sbjct: 134 SVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVY 170
>1qqp_3 FMDV, protein (genome polyprotein); heparan sulphate,
virus-receptor interactions/protein carbohydrate
interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth
disease virus} SCOP: b.121.4.1 PDB: 1fod_3 1bbt_3*
1fmd_3 1qgc_3 1zba_3* 1zbe_3
Length = 220
Score = 28.5 bits (63), Expect = 5.1
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 317 TTTVSPAYPVYTSTPYTPNIPSPPRFHNYSE 347
TT A PVY P P RF N +
Sbjct: 16 TTDPKTADPVYGKVFNPPRNQLPGRFTNLLD 46
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.1 bits (64), Expect = 5.1
Identities = 17/101 (16%), Positives = 22/101 (21%), Gaps = 21/101 (20%)
Query: 216 WTCVISGKNARCRCFNP-CQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGEC 274
C G A C + C Q T+C CR Y +G C
Sbjct: 194 TICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVA----------------CRNFYLDGRC 237
Query: 275 RPQ-PQNVCADNCKDDADCTGQAKC---CPNDCGYSCSNLF 311
P + + C N C
Sbjct: 238 VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYV 278
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 28.8 bits (64), Expect = 5.6
Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 198 RNSFITMPELTPNTFLF------QWTCVISGKNARCRCFNPCQNQDPQCPSNTRCAVDLV 251
I + + T F F ++ + +C N + D S C V
Sbjct: 164 PGPCIMLKKRTAPAFQFSSCSIREYREYLLRDRPQC-ILNKPLSTDIV--SPPICGNYFV 220
Query: 252 RNPETRETQYIAVCR-PLYKEGECRPQPQNVCADNCKDDAD----CTGQAKCCPNDC--- 303
E + C+ C+ + KDD D CTGQ+ CP D
Sbjct: 221 EVGEECDCGSPQACQSACCNAATCQFKGAETECRVAKDDCDLPELCTGQSAECPTDSLQR 280
Query: 304 -GYSCSN 309
G+ C N
Sbjct: 281 NGHPCQN 287
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 27.4 bits (60), Expect = 6.3
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 371 VYTWSKGEVSIDGSDGHYKLTLDG---VLQIVGLVRQDAGIYVCVAANGIGDPIRKEFNV 427
+ W S D L I QD+G Y+ N G K F +
Sbjct: 49 ILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQL 108
Query: 428 IV 429
++
Sbjct: 109 LI 110
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 27.2 bits (60), Expect = 7.2
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 30/100 (30%)
Query: 345 YSEPTVEAEEGNFVTLRCI-----AIGYPIPVYTWSK---------------GEVSIDGS 384
Y++ V G+ VTL C + I TW
Sbjct: 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISF-TWRYQPEGGRDAISIFHYAKGQPYIDE 62
Query: 385 DGHYK---------LTLDGVLQIVGLVRQDAGIYVCVAAN 415
G +K DG + I L D G + C N
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKN 102
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 28.3 bits (62), Expect = 7.2
Identities = 12/97 (12%), Positives = 18/97 (18%), Gaps = 8/97 (8%)
Query: 216 WTCVISGKNARCRCFNPCQNQDPQCPS--------NTRCAVDLVRNPETRETQYIAVCRP 267
C + G RC C C + C + R + + R
Sbjct: 82 KACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRC 141
Query: 268 LYKEGECRPQPQNVCADNCKDDADCTGQAKCCPNDCG 304
C + A C
Sbjct: 142 RKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPS 178
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 28.6 bits (63), Expect = 7.3
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 218 CVISGKNARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQ 277
+ + N P + CP + E Y +
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYR---------CWTTNR 180
Query: 278 PQNVCADNCKDDADCTGQAKCCPNDCGYSCSN 309
Q +C C A CT +CC +C SCS
Sbjct: 181 CQKMCPSTCGKRA-CTENNECCHPECLGSCSA 211
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 28.4 bits (62), Expect = 7.5
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 222 GKNARCRCFNPCQNQDPQCPSNTRCAVDLVRNPETRETQYIAVCRPLYKEGECRPQPQNV 281
KN RC+ + +C S R + E + +
Sbjct: 8 AKNGRCQVLYKTELSKEECCSTGR--LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKET 65
Query: 282 CADN-CKDDADC----TGQAKC-CPNDC 303
C + C C + +C C DC
Sbjct: 66 CENVDCGPGKKCRMNKKNKPRCVCAPDC 93
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 28.5 bits (64), Expect = 7.5
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 12/82 (14%)
Query: 339 PPRFHNYSEPTVEAEEGNFVTLRCIAIG-YPIPVY-TWSKGEVSIDGSDGHYKLTL---D 393
P+ YS AE G L C G +P + K I+ + D
Sbjct: 7 TPKIQVYS--RHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE--KVEHSDLSFSKD 62
Query: 394 GVLQI---VGLVRQDAGIYVCV 412
+ + Y C
Sbjct: 63 WSFYLLYYTEFTPTEKDEYACR 84
>2mev_3 Mengo virus coat protein (subunit VP3); cardio picornavirus coat
protein, icosahedral virus; 3.00A {Mengo virus} SCOP:
b.121.4.1 PDB: 1mec_3
Length = 231
Score = 28.0 bits (62), Expect = 8.1
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 317 TTTVSPAYPVYTSTPYTPNIPSPPRFHNYSE 347
+T P+Y TP P + ++ E
Sbjct: 16 STLPDSTVPIYGKTPVAPANYMVGEYKDFLE 46
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.8 bits (59), Expect = 8.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 398 IVGLVRQDAGIYVCVAANGIGDPIRKEFNVIV 429
+V L +DAG Y C+ G I ++ +
Sbjct: 72 MVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type
(immunoglobulin-like) domain, histocompatibi antigen,
immune system; HET: 16A; 1.32A {Gallus gallus} PDB:
3p77_A*
Length = 275
Score = 28.0 bits (63), Expect = 9.6
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 17/67 (25%)
Query: 358 VTLRCIAIG-YPIPVY-TWSKGEVSIDGSDGH----YKLTL---DGVLQI---VGLVRQD 405
+TL C A G YP P+ +W K DG + + DG + ++ +D
Sbjct: 197 LTLSCHAHGFYPRPITISWMK-----DGMVRDQETRWGGIVPNSDGTYHASAAIDVLPED 251
Query: 406 AGIYVCV 412
Y C
Sbjct: 252 GDKYWCR 258
>3vbh_C EV71, genome polyprotein, vapsid protein VP3; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_C* 3vbs_C* 3vbo_C 3vbr_C 3vbu_C 4aed_C* 4agy_C
4agx_C
Length = 242
Score = 27.7 bits (61), Expect = 9.7
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 317 TTTVSPAYPVYTSTPYTPNIPSPPRFHNYSE----PTVEAEEGNFVTLRCIAIGYPIPV 371
TT + P+ + TP I P N E T+ + PV
Sbjct: 15 TTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPV 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.448
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,657,947
Number of extensions: 582284
Number of successful extensions: 2960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2474
Number of HSP's successfully gapped: 948
Length of query: 615
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 516
Effective length of database: 3,937,614
Effective search space: 2031808824
Effective search space used: 2031808824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)