BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10164
(887 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HK6|A Chain A, Ral Binding Domain From Sec5
Length = 95
Score = 115 bits (288), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 1 MSPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIAR 60
M PP+VTGISP EG P T+VTIRGENLG P DLIGL ICG +CLL+AEW S +KI+ R
Sbjct: 2 MRQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCR 61
Query: 61 SGPGKG-RGEIIVSTSLGGEGTCTIQFR 87
G K +G+IIV+T GG+GT T+ F+
Sbjct: 62 VGQAKNDKGDIIVTTKSGGKGTSTVSFK 89
>pdb|1UAD|C Chain C, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|D Chain D, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 99
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 4 PPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGP 63
PP+VTGISP EG P T+VTIRGENLG P DLIGL ICG +CLL+AEW S +KI+ R G
Sbjct: 7 PPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQ 66
Query: 64 GKG-RGEIIVSTSLGGEGTCTIQFR 87
K +G+IIV+T GG GT T+ F+
Sbjct: 67 AKNDKGDIIVTTKSGGRGTSTVSFK 91
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 4 PPVVTGISPKEGPPGTRVTIRGENLG 29
P V++ SPKEG GTR + GEN G
Sbjct: 17 PVVISEFSPKEGGLGTRXLLYGENFG 42
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 5 PVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPG 64
P++ + P G G +VTI GE G G V G W + ++A
Sbjct: 495 PIIGHVGPMMGQVGHQVTIDGEGFGTN----TGTVKFGTTAANVVSWSNNQIVVAVPNVS 550
Query: 65 KGRGEIIVSTSLG 77
G+ I V +S G
Sbjct: 551 PGKYNITVQSSSG 563
>pdb|1MG5|A Chain A, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
pdb|1MG5|B Chain B, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
Length = 255
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 700 GLPTIKESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLK 759
GL T KE L+ +NLVIL+ IEN I + I P + + + +D +P +
Sbjct: 19 GLDTSKELLKRDLKNLVILDR--IENPAAIAE---LKAINPKVTVTFYPYDVTVPIAETT 73
Query: 760 PYAKEIIGNIITV 772
K I + TV
Sbjct: 74 KLLKTIFAQLKTV 86
>pdb|2H3B|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
pdb|2H3B|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
Length = 494
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + R D + GW
Sbjct: 46 KTENSKVRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKEVYREHFQDDVFNERGW 104
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 105 NYILEKYD--GHLPIEVKAVPEGSVIPRGNVLFTVENTDPE 143
>pdb|2GVL|A Chain A, Crystal Structure Of Murine Nmprtase
pdb|2GVL|B Chain B, Crystal Structure Of Murine Nmprtase
Length = 491
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + R D + GW
Sbjct: 43 KTENSKVRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKEVYREHFQDDVFNERGW 101
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 102 NYILEKYD--GHLPIEVKAVPEGSVIPRGNVLFTVENTDPE 140
>pdb|2H3D|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
pdb|2H3D|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
Length = 494
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + R D + GW
Sbjct: 46 KTENSKVRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKEVYREHFQDDVFNERGW 104
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 105 NYILEKYD--GHLPIEVKAVPEGSVIPRGNVLFTVENTDPE 143
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + R D + GW
Sbjct: 43 KTENSKVRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKEVYREHFQDDVFNERGW 101
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 102 NYILEKYD--GHLPIEVKAVPEGSVIPRGNVLFTVENTDPE 140
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 267 NALTVLQRYRFLFSLPLS--ISNN-ITKNDIDAV----INDYARAMNLFGKTDVALFKKV 319
N + +L+RY + +PL I+N IT ++DA+ IN +NL VA +
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKKITDQELDAIFDRTINTALEIVNLHASPYVAPAAAI 243
Query: 320 LFEVESNINDLRNML 334
+ ES I DLR +L
Sbjct: 244 IEMAESYIRDLRKVL 258
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + + D + GW
Sbjct: 51 KTENSKLRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGW 109
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 110 NYILEKYD--GHLPIEIKAVPEGFVIPRGNVLFTVENTDPE 148
>pdb|2GVJ|A Chain A, Crystal Structure Of Human Nmprtase In Complex With Fk866
pdb|2GVJ|B Chain B, Crystal Structure Of Human Nmprtase In Complex With Fk866
Length = 491
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + + D + GW
Sbjct: 43 KTENSKLRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGW 101
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 102 NYILEKYD--GHLPIEIKAVPEGFVIPRGNVLFTVENTDPE 140
>pdb|2GVG|A Chain A, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|B Chain B, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|C Chain C, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|D Chain D, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|E Chain E, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|F Chain F, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
Length = 491
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 310 KTDVALFKKVLFEVESNINDLRNMLRKKLK---IMPQTLQEQKTLIRNLVNLDAGGDPGW 366
KT+ + +KV +E E+ L+ +L K LK + + +QE K + + D + GW
Sbjct: 43 KTENSKLRKVKYE-ETVFYGLQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGW 101
Query: 367 DAIISQYEYITHLLESCK---------NEHMLLDVENSKPK 398
+ I+ +Y+ HL K ++L VEN+ P+
Sbjct: 102 NYILEKYD--GHLPIEIKAVPEGFVIPRGNVLFTVENTDPE 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,101,156
Number of Sequences: 62578
Number of extensions: 953459
Number of successful extensions: 2601
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2595
Number of HSP's gapped (non-prelim): 18
length of query: 887
length of database: 14,973,337
effective HSP length: 107
effective length of query: 780
effective length of database: 8,277,491
effective search space: 6456442980
effective search space used: 6456442980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)