Query psy10164
Match_columns 887
No_of_seqs 310 out of 824
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:29:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2347|consensus 100.0 4E-118 8E-123 1012.8 61.8 874 1-877 9-925 (934)
2 KOG2346|consensus 100.0 1.9E-49 4E-54 426.3 31.0 523 155-837 27-602 (636)
3 PF15469 Sec5: Exocyst complex 100.0 1.4E-41 2.9E-46 345.9 21.0 179 194-372 1-182 (182)
4 cd01180 IPT_plexin_repeat1 Fir 99.6 1.3E-14 2.8E-19 131.1 9.1 84 5-88 1-92 (94)
5 KOG3610|consensus 99.5 2.6E-14 5.7E-19 172.3 8.8 181 2-188 47-269 (1025)
6 cd01179 IPT_plexin_repeat2 Sec 99.4 1.2E-12 2.6E-17 116.1 8.6 81 5-89 1-84 (85)
7 PF04124 Dor1: Dor1-like famil 99.3 1.1E-08 2.3E-13 114.5 37.8 300 172-527 5-312 (338)
8 cd00603 IPT_PCSR IPT domain of 99.2 3.4E-11 7.5E-16 108.0 9.0 81 5-88 1-88 (90)
9 cd00102 IPT Immunoglobulin-lik 99.0 1.6E-09 3.4E-14 96.7 9.4 80 5-88 1-87 (89)
10 smart00429 IPT ig-like, plexin 98.9 5.5E-09 1.2E-13 93.6 8.3 69 4-75 1-76 (90)
11 cd01175 IPT_COE IPT domain of 98.7 5E-08 1.1E-12 82.8 7.3 69 5-79 1-71 (85)
12 cd01181 IPT_plexin_repeat3 Thi 98.7 3.8E-08 8.2E-13 89.7 7.1 57 5-66 1-63 (99)
13 PF01833 TIG: IPT/TIG domain; 98.7 4.3E-08 9.4E-13 86.4 7.2 81 5-87 1-84 (85)
14 cd02849 CGTase_C_term Cgtase ( 98.7 9.2E-08 2E-12 83.6 8.8 69 4-77 2-71 (81)
15 cd00604 IPT_CGTD IPT domain (d 98.5 4.1E-07 8.9E-12 79.5 9.1 68 5-77 1-69 (81)
16 PF08700 Vps51: Vps51/Vps67; 98.2 3.2E-06 6.9E-11 75.3 7.0 69 157-225 2-70 (87)
17 KOG3610|consensus 98.2 9.3E-06 2E-10 99.5 11.8 150 4-165 142-338 (1025)
18 PF10475 DUF2450: Protein of u 98.1 0.00094 2E-08 73.3 23.8 195 160-359 12-211 (291)
19 KOG2033|consensus 97.8 0.15 3.2E-06 59.9 41.5 193 174-381 17-229 (863)
20 KOG2069|consensus 97.5 0.0085 1.8E-07 69.0 20.7 180 172-359 29-211 (581)
21 PF06248 Zw10: Centromere/kine 97.5 0.49 1.1E-05 57.4 37.4 159 174-339 7-178 (593)
22 KOG2176|consensus 97.3 0.77 1.7E-05 55.3 44.7 562 183-830 50-703 (800)
23 PF04100 Vps53_N: Vps53-like, 97.0 0.073 1.6E-06 60.7 21.1 167 159-339 2-182 (383)
24 PF04091 Sec15: Exocyst comple 97.0 0.0015 3.2E-08 72.3 6.9 108 716-831 143-253 (311)
25 PF06148 COG2: COG (conserved 96.3 0.0059 1.3E-07 58.9 5.3 110 157-281 9-118 (133)
26 KOG2307|consensus 96.0 4.3 9.3E-05 47.1 41.0 175 157-338 29-208 (705)
27 PF10392 COG5: Golgi transport 96.0 0.065 1.4E-06 51.6 10.7 123 157-284 4-131 (132)
28 PF04437 RINT1_TIP1: RINT-1 / 95.3 0.097 2.1E-06 62.0 11.0 124 710-835 302-431 (494)
29 cd01176 IPT_RBP-Jkappa IPT dom 94.5 0.15 3.3E-06 44.6 7.1 58 2-65 3-60 (97)
30 KOG3691|consensus 94.3 1.7 3.7E-05 52.8 17.6 132 174-310 43-174 (982)
31 PF04048 Sec8_exocyst: Sec8 ex 92.5 1.1 2.4E-05 43.8 10.4 124 158-287 18-141 (142)
32 cd01179 IPT_plexin_repeat2 Sec 91.1 0.25 5.3E-06 43.7 3.8 38 98-136 31-73 (85)
33 TIGR03437 Soli_cterm Solibacte 90.9 0.72 1.6E-05 48.1 7.5 57 18-77 5-73 (215)
34 PF10474 DUF2451: Protein of u 90.2 6 0.00013 42.0 13.8 118 713-834 49-172 (234)
35 PF10191 COG7: Golgi complex c 90.0 62 0.0014 40.6 54.7 209 156-373 5-228 (766)
36 cd01180 IPT_plexin_repeat1 Fir 89.1 0.55 1.2E-05 42.4 4.4 38 98-136 34-80 (94)
37 cd01181 IPT_plexin_repeat3 Thi 87.8 0.96 2.1E-05 41.3 5.1 38 98-136 33-82 (99)
38 KOG2180|consensus 85.7 78 0.0017 38.4 20.1 168 159-338 17-196 (793)
39 KOG4424|consensus 83.1 14 0.00031 43.3 12.5 144 207-371 80-227 (623)
40 PF09099 Qn_am_d_aIII: Quinohe 79.4 2.5 5.4E-05 37.0 3.8 65 4-76 1-71 (81)
41 cd01178 IPT_NFAT IPT domain of 78.1 7.9 0.00017 35.3 6.7 82 5-89 2-100 (101)
42 PF06046 Sec6: Exocyst complex 75.8 1.1E+02 0.0025 36.8 18.2 149 673-832 317-476 (566)
43 cd07674 F-BAR_FCHO1 The F-BAR 70.5 1.6E+02 0.0035 31.7 16.7 47 291-337 163-209 (261)
44 PF10516 SHNi-TPR: SHNi-TPR; 69.0 4.2 9.2E-05 30.2 2.3 22 288-309 11-32 (38)
45 PF04129 Vps52: Vps52 / Sac2 f 68.3 2.3E+02 0.0049 33.9 17.9 56 234-296 44-99 (508)
46 cd00602 IPT_TF IPT domain of e 63.7 21 0.00045 32.7 6.2 82 5-89 1-100 (101)
47 cd00603 IPT_PCSR IPT domain of 59.7 13 0.00028 32.8 4.1 38 98-136 32-74 (90)
48 KOG2347|consensus 57.1 8.9 0.00019 47.0 3.3 225 155-389 84-339 (934)
49 PRK10548 flagellar biosynthesi 56.3 82 0.0018 29.9 9.0 96 268-386 4-99 (121)
50 KOG4603|consensus 55.9 1.5E+02 0.0033 29.6 10.7 67 212-305 99-165 (201)
51 PF07393 Sec10: Exocyst comple 54.9 5.1E+02 0.011 32.3 47.7 120 721-844 538-662 (710)
52 cd00102 IPT Immunoglobulin-lik 50.1 25 0.00054 30.5 4.4 38 98-136 31-74 (89)
53 PF14923 CCDC142: Coiled-coil 46.2 5.5E+02 0.012 30.1 29.5 94 746-839 259-360 (450)
54 cd07657 F-BAR_Fes_Fer The F-BA 45.7 4E+02 0.0087 28.3 16.6 157 175-336 66-227 (237)
55 PRK14082 hypothetical protein; 43.8 42 0.00092 27.9 4.2 51 319-369 7-64 (65)
56 PF04212 MIT: MIT (microtubule 42.8 58 0.0013 27.2 5.2 21 290-310 17-37 (69)
57 cd07651 F-BAR_PombeCdc15_like 42.6 4.3E+02 0.0094 27.8 16.2 48 291-338 170-217 (236)
58 cd02683 MIT_1 MIT: domain cont 40.4 74 0.0016 27.6 5.6 50 288-337 16-73 (77)
59 PF08385 DHC_N1: Dynein heavy 39.5 7.4E+02 0.016 29.7 16.6 186 176-390 226-453 (579)
60 PF00515 TPR_1: Tetratricopept 38.9 33 0.00071 23.8 2.7 21 288-308 11-31 (34)
61 KOG0520|consensus 38.9 58 0.0013 41.1 6.4 68 6-77 406-475 (975)
62 cd07671 F-BAR_PSTPIP1 The F-BA 38.7 5.2E+02 0.011 27.6 18.2 63 291-353 173-238 (242)
63 PF13176 TPR_7: Tetratricopept 38.5 32 0.00069 24.7 2.6 22 288-309 9-30 (36)
64 KOG0553|consensus 37.5 57 0.0012 35.6 5.4 75 287-361 90-181 (304)
65 smart00429 IPT ig-like, plexin 35.5 68 0.0015 28.0 4.8 33 103-136 39-78 (90)
66 KOG3743|consensus 34.5 76 0.0017 37.1 5.9 57 3-65 492-548 (622)
67 smart00745 MIT Microtubule Int 34.1 91 0.002 26.6 5.2 47 291-337 21-75 (77)
68 PF04011 LemA: LemA family; I 33.4 2.9E+02 0.0064 28.0 9.7 20 291-310 138-157 (186)
69 cd02682 MIT_AAA_Arch MIT: doma 32.3 1.1E+02 0.0024 26.4 5.3 48 287-334 15-70 (75)
70 KOG1961|consensus 30.8 1E+03 0.022 28.7 15.7 93 204-306 76-168 (683)
71 cd07648 F-BAR_FCHO The F-BAR ( 29.8 7.2E+02 0.016 26.6 14.9 46 292-337 164-209 (261)
72 PF07719 TPR_2: Tetratricopept 28.7 65 0.0014 22.0 2.8 22 288-309 11-32 (34)
73 cd07673 F-BAR_FCHO2 The F-BAR 28.3 7.9E+02 0.017 26.6 15.3 50 290-339 169-218 (269)
74 PF05769 DUF837: Protein of un 28.0 6.6E+02 0.014 25.6 12.3 95 235-339 13-109 (181)
75 cd02681 MIT_calpain7_1 MIT: do 27.7 1.4E+02 0.003 25.9 5.1 46 289-334 17-71 (76)
76 PF14734 DUF4469: Domain of un 27.4 1.9E+02 0.0042 26.5 6.3 60 18-78 19-89 (102)
77 PF13181 TPR_8: Tetratricopept 26.7 73 0.0016 21.9 2.8 21 288-308 11-31 (34)
78 PF10474 DUF2451: Protein of u 26.6 5.2E+02 0.011 27.4 10.4 85 294-378 14-106 (234)
79 PRK04863 mukB cell division pr 25.7 1.9E+03 0.041 30.1 18.6 203 176-387 788-1076(1486)
80 PF12022 DUF3510: Domain of un 25.3 2E+02 0.0043 27.4 6.3 49 747-795 22-71 (125)
81 cd07653 F-BAR_CIP4-like The F- 24.4 8.5E+02 0.018 25.7 16.5 46 290-335 180-226 (251)
82 COG1516 FliS Flagellin-specifi 24.2 6.6E+02 0.014 24.3 9.9 81 274-382 12-93 (132)
83 KOG0810|consensus 23.8 1E+03 0.022 26.3 14.2 51 174-225 33-83 (297)
84 KOG0994|consensus 23.6 1.6E+03 0.035 29.5 14.7 114 242-386 1411-1526(1758)
85 KOG0376|consensus 23.6 89 0.0019 36.3 4.1 53 282-334 69-126 (476)
86 PF10607 CLTH: CTLH/CRA C-term 23.5 6.4E+02 0.014 23.9 10.8 86 283-371 6-104 (145)
87 PF12209 SAC3: Leucine permeas 23.4 2.1E+02 0.0045 25.0 5.5 33 772-804 14-51 (79)
88 cd07649 F-BAR_GAS7 The F-BAR ( 22.9 9.2E+02 0.02 25.5 15.2 48 291-338 167-214 (233)
89 KOG4648|consensus 22.7 1E+03 0.022 26.9 11.5 75 287-363 106-199 (536)
90 smart00806 AIP3 Actin interact 22.6 1.2E+03 0.027 26.9 14.7 126 189-329 156-294 (426)
91 KOG2022|consensus 22.4 1.4E+03 0.03 29.1 13.8 107 750-877 847-971 (982)
92 PF04420 CHD5: CHD5-like prote 22.4 1.5E+02 0.0031 29.6 5.0 49 177-225 36-85 (161)
93 KOG4451|consensus 22.3 4E+02 0.0087 27.9 8.0 79 192-279 54-132 (286)
94 cd07680 F-BAR_PACSIN1 The F-BA 21.6 1E+03 0.022 25.6 13.4 48 291-338 188-235 (258)
95 cd07676 F-BAR_FBP17 The F-BAR 21.5 1E+03 0.022 25.5 13.9 46 289-334 181-227 (253)
96 PF12729 4HB_MCP_1: Four helix 21.4 7.2E+02 0.016 23.7 14.0 92 235-333 78-169 (181)
97 smart00340 HALZ homeobox assoc 21.3 1.8E+02 0.0039 22.1 3.9 16 816-831 2-17 (44)
98 PF07889 DUF1664: Protein of u 21.3 6.1E+02 0.013 24.3 8.6 40 234-273 70-109 (126)
99 PF06385 Baculo_LEF-11: Baculo 20.6 47 0.001 30.0 0.9 33 266-303 60-92 (94)
100 KOG4514|consensus 20.5 8.1E+02 0.018 24.8 9.4 23 252-274 198-220 (222)
101 KOG1924|consensus 20.5 6.2E+02 0.014 31.5 10.2 56 172-227 892-960 (1102)
No 1
>KOG2347|consensus
Probab=100.00 E-value=3.7e-118 Score=1012.79 Aligned_cols=874 Identities=35% Similarity=0.521 Sum_probs=743.7
Q ss_pred CCCCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC-ceeeEEEEEecCCc
Q psy10164 1 MSPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK-GRGEIIVSTSLGGE 79 (887)
Q Consensus 1 ~~p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~~g~v~V~v~~~~~ 79 (887)
|+++|.+|+.+|..||+||.++|+|.++|.+.+|+....|+|.+|.+..+|.+++.|.|++|++. +.|.+.|+..+++.
T Consensus 9 ~~q~p~vtg~s~~e~~p~t~~~ir~e~l~~~~sd~~~l~i~g~D~lls~~~~s~~~~~~~~g~a~~~~G~~r~~~~~~~~ 88 (934)
T KOG2347|consen 9 LAQQPRVTGLSPNEGGPGTAVTIRKEFLGNDESDVIGLSICGGDELLSAERKSPNGIIARVGLAKREKGDIRVTTLSGGK 88 (934)
T ss_pred ccCCccccCCCCCCCCCCcceeecCCccCcchhhHhhhhhcccchhhhhhcCCCCccccccccccCCCCceEEeeccCcc
Confidence 67899999999999999999999999999998988899999999998888999999999999998 59999999999999
Q ss_pred ccceeeec-ccccCCCCCceeEEEEcCcccccccccc-cccCCCCCCCCcCeEEEEecccccCCccccccCCCCCCCCCc
Q psy10164 80 GTCTIQFR-GYHETIGPLKESAVWIEEAPIQSLSWSR-RSMSPSSYQIEDPLGLSVEREDRKIPEDDLHELFPDGSGDLS 157 (887)
Q Consensus 80 ~~s~~~F~-~~~P~~gp~~~~~V~i~~~~C~~~~~~~-~~tsps~~~~~dPLgl~v~~~~~~~~~~~~~~~F~~ys~dp~ 157 (887)
|++++.|. ..+-..||+.++.||+++.+-....+++ ...+........|++..++......+. ++...||..++|+.
T Consensus 89 g~s~~~f~r~~~~qi~~l~~s~~~~d~~~~~~~~~~~~~~~~~t~l~~~~~l~~~i~~~k~~~~~-d~~~lfp~~~~Dl~ 167 (934)
T KOG2347|consen 89 GTSTVCFRRVNHEQIGPLDESAVRVDEQQDQRKVPGRLKGVALTSLQSEPPLGECIEPLKLKINE-DNKTLFPITSVDLR 167 (934)
T ss_pred ccCchhhhhhhHhhhccchhhhhhcccccccccccccccccCCcccccCCCcccccCchhhcchh-hhhhhccccccccc
Confidence 99999995 7778899999999999996554344444 333344444445777666655444433 23567999999999
Q ss_pred cccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHH
Q psy10164 158 LENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKV 237 (887)
Q Consensus 158 ~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L 237 (887)
+++|+|+||+...|..++|++|..+...|+++.+.+++..+.+|++||+.||+|+||+++++..++....+..+++|.+|
T Consensus 168 se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l 247 (934)
T KOG2347|consen 168 SEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKL 247 (934)
T ss_pred cccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999885555556788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHH
Q psy10164 238 EIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFK 317 (887)
Q Consensus 238 ~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~ 317 (887)
+..|+++++.|+.+|.||++|++|||++|+|+++|+||+||||||++++++|++|+||.+|+||.|||+++.++++++|+
T Consensus 248 ~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~t~v~~Fk 327 (934)
T KOG2347|consen 248 ENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGKTEVNLFK 327 (934)
T ss_pred HHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--
Q psy10164 318 KVLFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIRNLVNLDAGGDPGWDAIISQYEYITHLLESCKNEHMLLDVENS-- 395 (887)
Q Consensus 318 ~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~~~~~~~~~~~~~l~-- 395 (887)
++++|||..|++||..|+++|.+++.+.+++.++|++|.+|.+++||+|+||..|++|+...+..|.+.+...++.+.
T Consensus 328 k~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~wq~I~~q~k~i~~L~~s~~~~~~~~l~~~~~~ 407 (934)
T KOG2347|consen 328 KVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPVWQCIGVQNKRILGLLESCWDDHVARLEGLRLS 407 (934)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCchhhhccccchHHHhhhhhcchhHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877332
Q ss_pred C-CCCCCCC--CCCCCCcccC----CCC------CCCchHHHHHHHHHHHHHhhhhHHHhhhhhcccccccCCCCCCChH
Q psy10164 396 K-PKKPKHT--RSASGSHILE----PAP------VFVPQPILCVEELTAIVSERFPDLWKLGQSYFSGELQGTVEPTNQL 462 (887)
Q Consensus 396 ~-~~~~~~~--~~~~~~~~~~----~~~------~~~~~v~efv~~l~~~l~~~l~~fw~~~~~y~~g~~~~~~~~~~~~ 462 (887)
+ -..+..+ .-++.+...+ +.. ..+|..++||+.+++++.+++|.|||++.+|++|......++-+.+
T Consensus 408 ~~~~q~s~~g~~~S~t~s~~~~~~~q~~~~~~~~~k~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~~sq~~~s 487 (934)
T KOG2347|consen 408 DKWTQPSQNGVHLSDTASSMENSQNQVINEWKIREKTPERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSPSSQVQDS 487 (934)
T ss_pred ccccchhhcccccCchHHHHhhhhhhhccchhhhhhchHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCcccccChh
Confidence 1 0011111 0000000000 112 2577899999999999999999999999999999544433321223
Q ss_pred HH--------HHHHHHHHHHHHHHHHhccCCCCCCCccc-cccccc--ccchhchHHHHHHHHHHHHHHHhcCC-CCchH
Q psy10164 463 MF--------KKIILDVVALSSKSIRSSVLPHTCDSSVK-TFSLIY--KESLGSHLPTALQYLCDLYSNLLALD-LPTQA 530 (887)
Q Consensus 463 ~~--------~~m~~~~i~~~~~li~~~~~~~s~~~~~~-~~~g~~--sls~~~~L~~~l~~i~~~~~~l~~l~-~~~~~ 530 (887)
++ ..|....+..++.+....+.+.+-.+.+. ..+|+| +-+...|++.+++.++..++.|..++ +|.++
T Consensus 488 ~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~sL~ale~~P~~~ 567 (934)
T KOG2347|consen 488 DINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKACQSLEALESLPHDA 567 (934)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccccCccchhHHHHhHHHHHHHHHhhhChHHH
Confidence 33 34444555555555555554433223322 257888 33334899999999999999999999 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccc-CCCCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q psy10164 531 LQIVSKLLFDLKLHTLLCLVKHCGSQIKELKHKENWQYEF-NPNKGAITQLPKQIELLLSDMVQNIKTNVLSKDDKDNPL 609 (887)
Q Consensus 531 ~~~l~~L~~~~r~~~~~ai~~~~~~d~~~l~~lEdW~~~~-~~~~~~~T~lp~~~~~~~~~~l~~i~~il~~~~~~~~~i 609 (887)
++.|+.|+..+|.+|+++++.+.++.|+.+.+.|+|.++. .....++|.||..|+......|++++.+++..+ +|.++
T Consensus 568 lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~s~~~rn~s~t~LP~~fEt~ivssl~q~~~~~l~~~-gEa~~ 646 (934)
T KOG2347|consen 568 LQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPDSILERNRSITYLPLAFETVIVSSLEQVNSVLLSFE-GEAAL 646 (934)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcccchhhhhHHHHHHHhhhHHhhhhHHhhcc-ccccc
Confidence 9999999999999999999999999999999999999972 123456999999999999999999999966655 89999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCccccccCCCccccC---------cCCCCCCCcceEEEEec
Q psy10164 610 FNSDVAKHEFSIEVNKLLSAVVNLLDELSS-SSSDQEDNMPVSQLIGSPLVYSD---------KQLNGTFYEERLLLTLS 679 (887)
Q Consensus 610 v~~p~~~~~~~~~~~~~l~~~~~~l~~la~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~rlLLtLs 679 (887)
+.+|..+..+++++..++.+|+-|+++++. ..+.+.|.++.......+.++++ ..-.+.+++.|||++||
T Consensus 647 f~~~~~~~~i~el~I~~~~~fl~c~e~L~~h~~~~~~~~~q~~t~~~~~~~~~~~~qed~~~ns~~~~~~~~qrlLi~Ls 726 (934)
T KOG2347|consen 647 FEQPDMQAEIEELSISVRLAFLNCFEDLAIHLEQIGADLSQLTTQIEGQNGFSNAHQEDISINSADSVVDPEQRLLIVLS 726 (934)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcccccccccccccccchhhhcccccccCChhheeEEEec
Confidence 999999999999999999999999999987 33333333233322222222110 11224678999999999
Q ss_pred chHHHHHhhhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCCCCCCCCCCCCC
Q psy10164 680 NCQYICFFIFPRLDDLFIQNGLPTIKESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLK 759 (887)
Q Consensus 680 Nl~~l~~~~~p~L~~~f~~~f~~~lt~~~~~i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p~~Vr 759 (887)
|+.|++...+|.|++.| +.+...-....+.+...++++++++|++|++.+++++++++++++|.|+++|..+++|.+||
T Consensus 727 N~~yc~~~~~~~l~n~f-k~~~~~~~k~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~~~~~~W~~~~~~~~ir 805 (934)
T KOG2347|consen 727 NIGYCKDILAPTLLNIF-KYTWLLSRKNIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLLDGGIQWGMAPPVKGIR 805 (934)
T ss_pred cHHHHHHHHHHHHHHHH-HHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhccccccccCCCccchH
Confidence 99999999999999999 43333333334445669999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc-CCCCCccchhhHhhhHHHHHHHhhhhcchhHHH
Q psy10164 760 PYAKEIIGNIITVHAELVRIVPSVISKVISGIVETVAEELSRLMSC-VTKFSECGKQQAFIDMSSLKNTLSQYCTDSAKA 838 (887)
Q Consensus 760 ~yv~e~L~~LV~Vhsev~~~~p~L~~~IL~~l~~~~~~~ll~~~~~-v~~fs~~Gl~Qa~lDi~fl~~~L~~y~t~~a~~ 838 (887)
+|++|+|++||+|||||++++|+|+.+||..+|+.++++|+++|+| |+.||.+|.+||.||++||+.+|..|+|.++++
T Consensus 806 dYa~E~l~~lV~VhaEvf~iap~Ll~kiL~~~ve~i~d~L~~l~~~~v~s~S~nG~lQi~vdl~~l~~~l~~Ylt~~a~~ 885 (934)
T KOG2347|consen 806 DYAKEALHNLVAVHAEVFAIAPQLLDKILGETVEGISDELLRLFSCDVQSFSANGALQIMVDLEYLEDVLGPYLTKDAKE 885 (934)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcceeeeeeHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhhCCC-CChhHHHHHHHHHHHHHHHhHHHHhccc
Q psy10164 839 YFSEALDVIPP-LNATQQQRVEQILSQYQVRMKLQLLSLF 877 (887)
Q Consensus 839 ~~~~~~~~i~~-~~~~~~~~l~~~l~~~~~~t~~qf~cf~ 877 (887)
+|.+++..|++ .++++.+++|+||++++..|++|+.||.
T Consensus 886 slkqale~l~~~~~g~dtr~lee~ln~~k~sm~l~Lqc~~ 925 (934)
T KOG2347|consen 886 SLKQALEALSECLSGGDTRRLEECLNDDKQSMRLQLQCFQ 925 (934)
T ss_pred HHHHHHHHhhhhccCcchhhHHHHHHHhhHHHHHHHHHHH
Confidence 99988888877 6668999999999999999999999993
No 2
>KOG2346|consensus
Probab=100.00 E-value=1.9e-49 Score=426.34 Aligned_cols=523 Identities=14% Similarity=0.134 Sum_probs=385.0
Q ss_pred CCccccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcc
Q psy10164 155 DLSLENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPT 234 (887)
Q Consensus 155 dp~~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~ 234 (887)
|++..+|+|+.|+...-+.++++.|.+.+..|.++|+.+++|||+||||||||||+|+|||++|+++|..+ +++|
T Consensus 27 DlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~m----e~eM- 101 (636)
T KOG2346|consen 27 DLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGM----EQEM- 101 (636)
T ss_pred ccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhh----cchh-
Confidence 88999999999999999999999999999999999999999999999999999999999999999997666 4455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC-cch
Q psy10164 235 IKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK-TDV 313 (887)
Q Consensus 235 ~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~-~~~ 313 (887)
++|+++|..+++++..+.+.+.++|+.+.++-....++.+.||+|+||.+|++|++.+.|..+++.|..|...+.. .+.
T Consensus 102 d~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~~ 181 (636)
T KOG2346|consen 102 DGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDGR 181 (636)
T ss_pred hhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998886 669
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10164 314 ALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIRNLVNLDAGGDPGWDAIISQYEYITHLLESCKNEHMLLDVE 393 (887)
Q Consensus 314 ~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~~~~~~~~~~~~~ 393 (887)
|+|+-+...+++|...+.++|..||.++..+.....+++.+|+.||.+.|.....+.. +.++.+.
T Consensus 182 psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~-----------~~eqsLD---- 246 (636)
T KOG2346|consen 182 PSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLE-----------KLEQSLD---- 246 (636)
T ss_pred CcHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHH-----------HHhccch----
Confidence 9999999999999999999999999999999999999999999999988865333222 1222211
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhh-hcccccccCCCCCCChHHHHHHHHHHH
Q psy10164 394 NSKPKKPKHTRSASGSHILEPAPVFVPQPILCVEELTAIVSERFPDLWKLGQ-SYFSGELQGTVEPTNQLMFKKIILDVV 472 (887)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~efv~~l~~~l~~~l~~fw~~~~-~y~~g~~~~~~~~~~~~~~~~m~~~~i 472 (887)
+++ +|.... .|+.+-. ..-
T Consensus 247 ----------------------------vL~---------------~~d~~~s~fv~~l~-----------------s~a 266 (636)
T KOG2346|consen 247 ----------------------------VLQ---------------IKDEEASTFVEDLD-----------------SSA 266 (636)
T ss_pred ----------------------------hhe---------------eecccccccccchh-----------------hhh
Confidence 111 221111 1111100 011
Q ss_pred HHHHHHHHhccCCCCCC-CcccccccccccchhchHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 473 ALSSKSIRSSVLPHTCD-SSVKTFSLIYKESLGSHLPTALQYLCDLYSNLLALDLPTQALQIVSKLLFDLKLHTLLCLVK 551 (887)
Q Consensus 473 ~~~~~li~~~~~~~s~~-~~~~~~~g~~sls~~~~L~~~l~~i~~~~~~l~~l~~~~~~~~~l~~L~~~~r~~~~~ai~~ 551 (887)
..+..++..++..++.. +++ .++|.|+++.+ ++++---+++.++.+-+.+++.. .++++|.-.+-.
T Consensus 267 ~t~~alv~~~~~~e~~~~d~S---------~~vRAldr~fr-~s~~r~~~~a~~l~~~~~el~~~---v~~~e~~l~l~r 333 (636)
T KOG2346|consen 267 DTESALVHPAKIHEDAVRDFS---------EAVRALDRIFR-DSEERLFKLARALTAMLPELLLS---VLLRECFLILNR 333 (636)
T ss_pred hhhhhhhhhhhhhhccccchH---------HHHHHHHHHcc-cccchHHHhhhhhHHhhHHHHHH---HHHHHHHHHHHH
Confidence 12234444444332211 112 56788899988 88888777777765555555444 556665432211
Q ss_pred HHHHHHHhhhhccCcccccCCCCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCCCcccCchhhHHHHHHHHHHHHHHH
Q psy10164 552 HCGSQIKELKHKENWQYEFNPNKGAITQLPKQIELLLSDMVQNIKTNVLSKDDKDNPLFNSDVAKHEFSIEVNKLLSAVV 631 (887)
Q Consensus 552 ~~~~d~~~l~~lEdW~~~~~~~~~~~T~lp~~~~~~~~~~l~~i~~il~~~~~~~~~iv~~p~~~~~~~~~~~~~l~~~~ 631 (887)
.-.|-.+ .|+.+++++.. .-+..+.+.+...|.
T Consensus 334 -i~~~f~~-------------------------------~L~evr~ali~---------------~L~s~~~q~~~~~~k 366 (636)
T KOG2346|consen 334 -IYQDFRQ-------------------------------LLDEVRGALIK---------------DLISGWIQKGSQDFK 366 (636)
T ss_pred -HHHHHHH-------------------------------HHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 1111111 12222222111 111222222222222
Q ss_pred HHHH----HhhcCCCCCCCCCccccccCCCccccCcCCCCCCCcceEEEEecch--------HHHHHhhhHHHHHHHHHc
Q psy10164 632 NLLD----ELSSSSSDQEDNMPVSQLIGSPLVYSDKQLNGTFYEERLLLTLSNC--------QYICFFIFPRLDDLFIQN 699 (887)
Q Consensus 632 ~~l~----~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlLLtLsNl--------~~l~~~~~p~L~~~f~~~ 699 (887)
.++. =.|++-.- ...|.+. + +.....+||+.+..+ .++.+.++.+++...+++
T Consensus 367 ~sLaa~~Lfta~~vsf----------sN~p~~~--~---S~~~hegLiv~~~~~~li~~~~~~~~~~~~a~y~l~l~~eq 431 (636)
T KOG2346|consen 367 RSLAAQFLFTAGKVSF----------SNDPEGK--S---SDKIHEGLIVVLAQLSLIEQKVIPRVTEEIAAYFLGLNSEQ 431 (636)
T ss_pred HHHHHHHHHhcccccc----------ccCCCcc--c---ccchhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 2222 11111100 0000000 0 011122444443333 555555666777777788
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhc
Q psy10164 700 GLPTIKESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLKPYAKEIIGNIITVHAELVRI 779 (887)
Q Consensus 700 f~~~lt~~~~~i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~~~ 779 (887)
|.....-...+++.+++ .++|+.+|++.++..++.++++.|.. ++|..+.+|++||+||++++.++-.|+.||+.+
T Consensus 432 F~~~p~~~v~~lc~~~r--a~kLl~hY~~~~gl~vs~~LrK~~~t--~~w~~~~epr~vra~v~r~vee~~~~d~ev~ll 507 (636)
T KOG2346|consen 432 FENGPAFIVGELCRVFR--AEKLLQHYIDTRGLKVSVLLRKRFKT--PNWVKHKEPREVRAYVDRFVEELEEVDKEVKLL 507 (636)
T ss_pred HhcCCCcchHHHHHHHH--HHHHHHHHHhhcchhHHHHHHHHhcC--CccccccccchHHHHHHHHHHHHHHHhHHHHHh
Confidence 87754445566888888 88999999999999999999999999 999999999999999999999999999999964
Q ss_pred chh------------------------hH--------------HHHHHHHHHHHHHHHHHhhccCCCCCccchhhHhhhH
Q psy10164 780 VPS------------------------VI--------------SKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDM 821 (887)
Q Consensus 780 ~p~------------------------L~--------------~~IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Qa~lDi 821 (887)
-|+ |+ ..|++.|++..+|.|.|+.| .+|||+.|++|+||||
T Consensus 508 l~~~rK~k~s~~~~~~~~t~l~t~~~kLf~erid~f~~veFn~~SvvT~ivK~~LK~l~E~vR-LqTf~rfG~qQvQvDc 586 (636)
T KOG2346|consen 508 LPQFRKHKRSGSNKMARSTLLETHLAKLFKERIDIFTKVEFNQESVVTTIVKLCLKSLQEYVR-LQTFNRFGFQQVQVDC 586 (636)
T ss_pred ccccccccccCccccchhHHHHHHHHHHHHHHhhhhceeeecchhhhHHHHHHHHHHHHHHHH-HHhhcccceeeeehhH
Confidence 442 11 22999999999999999988 5999999999999999
Q ss_pred HHHHHHhhhhcchhHH
Q psy10164 822 SSLKNTLSQYCTDSAK 837 (887)
Q Consensus 822 ~fl~~~L~~y~t~~a~ 837 (887)
+|||.+||++++||+.
T Consensus 587 ~fLq~~L~~~V~DE~~ 602 (636)
T KOG2346|consen 587 QFLQAPLKEAVEDEAA 602 (636)
T ss_pred HHHHHHHHHHhchHHH
Confidence 9999999999999966
No 3
>PF15469 Sec5: Exocyst complex component Sec5
Probab=100.00 E-value=1.4e-41 Score=345.86 Aligned_cols=179 Identities=39% Similarity=0.533 Sum_probs=171.4
Q ss_pred chhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 194 KEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEH-GLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVL 272 (887)
Q Consensus 194 ~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l 272 (887)
++++|+||++||++||+||+|||+||.+|+.+.... ++.++++|++.|+++++.|+.+|+|++++|+|++++++|+++|
T Consensus 1 s~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 1 SEDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998876543 2346899999999999999999999999999999999999999
Q ss_pred HHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHH
Q psy10164 273 QRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKT--DVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQKT 350 (887)
Q Consensus 273 ~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~--~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~ 350 (887)
+|++|||+||++|++||++|||+++|+||.||++++++. +.++|++||+|||+||++||+.||++|.+++.+.+++++
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~ 160 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLK 160 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCChHHHHHHHH
Q psy10164 351 LIRNLVNLDAGGDPGWDAIISQ 372 (887)
Q Consensus 351 ~I~~Ll~L~~~~dPiw~~l~~~ 372 (887)
+|++|++|++++||||+||.+|
T Consensus 161 ~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 161 LIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred HHHHHHhCCCCCCHHHHHHHcC
Confidence 9999999999999999999875
No 4
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.55 E-value=1.3e-14 Score=131.11 Aligned_cols=84 Identities=36% Similarity=0.585 Sum_probs=68.4
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCee-eEEEcCccCeec-cccccCCEEEEEeCCCC---ceeeEEEEEecC
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLI-GLVICGCDCLLS-AEWKSPNKIIARSGPGK---GRGEIIVSTSLG 77 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~-~V~vg~~~C~~~-~~~~~~~~IvC~t~~~~---~~g~v~V~v~~~ 77 (887)
|+|++|+|+.||. ||+|||+|+|||.+.+|.. +|+|||.+|.+. ..|.++++|+|+|+++. +.++|.|.++.+
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~~ 80 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGHG 80 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECCc
Confidence 8999999999999 9999999999999975443 899999999987 45888999999999876 467888888654
Q ss_pred C-cccceeeecc
Q psy10164 78 G-EGTCTIQFRG 88 (887)
Q Consensus 78 ~-~~~s~~~F~~ 88 (887)
. ...+...|++
T Consensus 81 ~~~~~~~~~F~Y 92 (94)
T cd01180 81 SFRTESSEGFSF 92 (94)
T ss_pred eecccccCceEE
Confidence 2 2334456654
No 5
>KOG3610|consensus
Probab=99.50 E-value=2.6e-14 Score=172.34 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=149.0
Q ss_pred CCCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCee-eEEEcCccCeec-cccccCCEEEEEeCCCCc-eeeEEEEEec
Q psy10164 2 SPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLI-GLVICGCDCLLS-AEWKSPNKIIARSGPGKG-RGEIIVSTSL 76 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~-~V~vg~~~C~~~-~~~~~~~~IvC~t~~~~~-~g~v~V~v~~ 76 (887)
||.|.|++++|..||+ ||.+||.|.|||...+|+. .|.|+|++|... .+|..+..|+|.++++.. +|+|.|++..
T Consensus 47 c~~P~i~~~~P~~g~~eggt~iti~g~nlg~~~~dv~~~v~Va~v~c~~~~~~y~~~~~i~C~~~~~~~~~g~v~~~v~~ 126 (1025)
T KOG3610|consen 47 CPLPSITALSPLNGPIEGGTNISIVGTNLGNSLNDVSDGVKVAGVRCSPVAEEYDCSPCIACSPGANGSWPGPINVAVGV 126 (1025)
T ss_pred cCCCcccceeeccccccCCceeeeeeeehhhhhhhccCCceEeeeecCCCccccccccceeeccCCCCCCCCceeEEecc
Confidence 8999999999999999 9999999999999999986 899999999988 789999999999988774 7998888874
Q ss_pred C--Cccccee-------eecccccCCCCCc----------------eeEEEEcCc-ccccccccc-----cc-cCCCCCC
Q psy10164 77 G--GEGTCTI-------QFRGYHETIGPLK----------------ESAVWIEEA-PIQSLSWSR-----RS-MSPSSYQ 124 (887)
Q Consensus 77 ~--~~~~s~~-------~F~~~~P~~gp~~----------------~~~V~i~~~-~C~~~~~~~-----~~-tsps~~~ 124 (887)
. +.+.+.. .|.++.|..||.+ .+.|.+++. ||. +.... .| +++....
T Consensus 127 ~~~~~~~ss~~~s~~~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~gs~~~~vv~~~~~c~-~~~~~~~~~~~c~t~~~~~~ 205 (1025)
T KOG3610|consen 127 TPYGPALSSCGSSLQGPCFLSAEPVNGPASGGTQVHCTGSPLDTGSCPDCVVSGLGPCV-ISVVQDSAVIFCVTSSQGAG 205 (1025)
T ss_pred ccccccccccceeecceeEEeeccCcCCCCCCcceEEeccccccCCCceEEecCCccce-eEeecCceEEEEecCCCCCC
Confidence 1 2234322 2367889999998 578888888 997 55443 23 5555555
Q ss_pred CCcCeEEEEecccccCCccccccCCCCCCCCCccccccccccccccc-----cCCChhhHHHhHHHHhh
Q psy10164 125 IEDPLGLSVEREDRKIPEDDLHELFPDGSGDLSLENFEPTWFLLDHH-----HATSFDDLRVGLSFLKR 188 (887)
Q Consensus 125 ~~dPLgl~v~~~~~~~~~~~~~~~F~~ys~dp~~~~f~P~~~l~~~~-----~~~sl~~L~~~~~~l~~ 188 (887)
.++|+-++|++.+...+. ..| .|..||+.....|.+++..|| .|++|..+|.+......
T Consensus 206 ~~~~~~v~f~~~~~~~~~----~~f-~y~~dps~~~i~P~~si~~gg~~i~v~G~~f~tVQ~~~i~~~~ 269 (1025)
T KOG3610|consen 206 SEAPVLVSFDRTPQKLTP----LAF-NYTADPSYSSVLPATSIKYGGRFITVNGTYFLTVQRPRLDVQT 269 (1025)
T ss_pred CccceEEEecccccccCC----CCc-ccccCCcceeccceeeEeeCCEEEEEeeeeeeeccCceEEeec
Confidence 789999999988766652 358 999999999999999999999 89999999988765544
No 6
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.38 E-value=1.2e-12 Score=116.10 Aligned_cols=81 Identities=28% Similarity=0.493 Sum_probs=63.6
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCCc-cc
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGGE-GT 81 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~~-~~ 81 (887)
|.|++|+|..||. ||+|||+|+||+.+.. + .|+|||.+|.+. +.++++|+|+++++...|.+.|.|..++. ..
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~~~-~-~V~ig~~~C~~~--~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~~ 76 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSS-V-RVTVGGQPCKIL--SVSSSQIVCLTPPSASPGEAPVKVLIDGARRL 76 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCCCe-E-EEEECCeEeeEE--EecCCEEEEECCCCCCCceEEEEEEECCcccC
Confidence 8999999999999 9999999999998743 5 899999999986 66789999999987755554444444432 33
Q ss_pred ceeeeccc
Q psy10164 82 CTIQFRGY 89 (887)
Q Consensus 82 s~~~F~~~ 89 (887)
+...|++.
T Consensus 77 ~~~~F~Y~ 84 (85)
T cd01179 77 APLVFTYT 84 (85)
T ss_pred CCccEEEe
Confidence 45666553
No 7
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.32 E-value=1.1e-08 Score=114.53 Aligned_cols=300 Identities=14% Similarity=0.121 Sum_probs=217.1
Q ss_pred cCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHH
Q psy10164 172 HATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKL 251 (887)
Q Consensus 172 ~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~ 251 (887)
...++++|..--..|..++...+.+++.|-.+||.-||...+++..+..++...... ++.|.+.+.+....+...
T Consensus 5 ~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~-----l~~L~~~l~~L~~~~~~f 79 (338)
T PF04124_consen 5 TSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDS-----LDSLLDSLPELDEACQRF 79 (338)
T ss_pred ccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 456888898888999999999999999999999999999999999999987654221 456666666655555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHHH
Q psy10164 252 FQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK-TDVALFKKVLFEVESNINDL 330 (887)
Q Consensus 252 ~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~-~~~~~f~~v~~eve~ii~~~ 330 (887)
-...-+-.++..+...+++-..+...+++||.-+..||.+|.|+.+.+-+..++++... .+.+++++|+.||+..+..+
T Consensus 80 ~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 80 SSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 44444444555667788888899999999999999999999999999999999998776 67899999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHcCCC-CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCC
Q psy10164 331 RNMLRKKLKIMPQTLQEQKTLIRNLVNLDA-GGDP-GWDAIISQYEYITHLLESCKNEHMLLDVENSKPKKPKHTRSASG 408 (887)
Q Consensus 331 r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~~-~~dP-iw~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 408 (887)
...|-.+|..+ .......++|.+|-.++. .+.. -..|+.++..|+.+.+...-..
T Consensus 160 l~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~---------------------- 216 (338)
T PF04124_consen 160 LSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKS---------------------- 216 (338)
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhh----------------------
Confidence 99999999877 888999999999999987 3333 6889999999998844432111
Q ss_pred CcccCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhccc--ccc-cC--CCCCCChHHHHHHHHHHHHHHHHHHHhcc
Q psy10164 409 SHILEPAPVFVPQPILCVEELTAIVSERFPDLWKLGQSYFS--GEL-QG--TVEPTNQLMFKKIILDVVALSSKSIRSSV 483 (887)
Q Consensus 409 ~~~~~~~~~~~~~v~efv~~l~~~l~~~l~~fw~~~~~y~~--g~~-~~--~~~~~~~~~~~~m~~~~i~~~~~li~~~~ 483 (887)
+...++.+..+++-.++-+---.+.+-|. +.- .. .......+.+-.++...+..|...++..+
T Consensus 217 ------------~~~~~lkr~iei~R~~~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L 284 (338)
T PF04124_consen 217 ------------DPYRYLKRYIEIYREHLFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYL 284 (338)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHh
Confidence 12234444444443332222222222222 110 00 00001123455577788888888888876
Q ss_pred CCCCCCCcccccccccccchhchHHHHHHHHHHHHHHHhcCCCC
Q psy10164 484 LPHTCDSSVKTFSLIYKESLGSHLPTALQYLCDLYSNLLALDLP 527 (887)
Q Consensus 484 ~~~s~~~~~~~~~g~~sls~~~~L~~~l~~i~~~~~~l~~l~~~ 527 (887)
|.. . ...+..++..+.-|+..++.++.+
T Consensus 285 -~~~-~--------------~~~~~sll~q~~y~~~S~~r~g~D 312 (338)
T PF04124_consen 285 -PRV-D--------------ESSRESLLTQLMYFASSFGRVGAD 312 (338)
T ss_pred -hcc-c--------------cchHHHHHHHHHHHHHhcCccCCC
Confidence 321 1 114566777777888888887754
No 8
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.23 E-value=3.4e-11 Score=107.97 Aligned_cols=81 Identities=31% Similarity=0.494 Sum_probs=67.0
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCce--eeEEEEEecCC--
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGR--GEIIVSTSLGG-- 78 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~--g~v~V~v~~~~-- 78 (887)
|+|++|+|..||. ||.|||+|+||+....++ .|++|+.+|.+. ..++++|+|.+++.... ++|.|.+....
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~-~V~ig~~~C~~~--~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~ 77 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRV-RVTVGGVPCKVL--NVSSTEIVCRTPAAATPGEGPVEVTVDGANVS 77 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceE-EEEECCEECcEE--ecCCCEEEEECCCCCCCCcEeEEEEECCcccc
Confidence 8999999999999 999999999999887556 899999999986 56889999999988754 77888886654
Q ss_pred -cccceeeecc
Q psy10164 79 -EGTCTIQFRG 88 (887)
Q Consensus 79 -~~~s~~~F~~ 88 (887)
...+...|++
T Consensus 78 ~~~~~~~~F~Y 88 (90)
T cd00603 78 ARVLSNTTFTY 88 (90)
T ss_pred ccccCCcceEE
Confidence 2334555654
No 9
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=99.00 E-value=1.6e-09 Score=96.70 Aligned_cols=80 Identities=33% Similarity=0.544 Sum_probs=65.7
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEE-cCccCeeccccccCCEEEEEeCCCCce--eeEEEEEecCC-
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVI-CGCDCLLSAEWKSPNKIIARSGPGKGR--GEIIVSTSLGG- 78 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~v-g~~~C~~~~~~~~~~~IvC~t~~~~~~--g~v~V~v~~~~- 78 (887)
|.|++|+|..||. ||.|||.|+||+.+. ++ .|++ |+.+|.+. ..+++.|+|.+++.... ++|.|.+...+
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~-~~-~v~~~g~~~c~~~--~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~ 76 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGS-NL-RVTFGGGVPCSVL--SVSSTAIVCTTPPYANPGPGPVEVTVDRGNG 76 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCC-cE-EEEEeCCCeEEEE--EecCCEEEEECCCCCCCCcEEEEEEEeCCCC
Confidence 8999999999999 999999999998885 56 8999 99999986 45789999999887754 88888887654
Q ss_pred -cccceeeecc
Q psy10164 79 -EGTCTIQFRG 88 (887)
Q Consensus 79 -~~~s~~~F~~ 88 (887)
.......|++
T Consensus 77 ~~~~~~~~F~Y 87 (89)
T cd00102 77 GITSSPLTFTY 87 (89)
T ss_pred cccCCCccEEe
Confidence 2333455654
No 10
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=98.88 E-value=5.5e-09 Score=93.64 Aligned_cols=69 Identities=28% Similarity=0.418 Sum_probs=53.5
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCee-eEEEcCccCeeccccccCCEEEEEeCCCC-c--eeeE-EEEEe
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLI-GLVICGCDCLLSAEWKSPNKIIARSGPGK-G--RGEI-IVSTS 75 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~-~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~--~g~v-~V~v~ 75 (887)
+|.|++|+|..||. ||.|||+|+||+.+.. +. .+..++.+|.+. ..++++|+|.+++.. . ..+| .|.+.
T Consensus 1 ~P~I~~i~P~~g~~~GGt~iti~G~nf~~~~~-~~~~~~~~~~~c~~~--~~~~~~i~C~tp~~~~~~~~~~v~~v~~~ 76 (90)
T smart00429 1 DPVITRISPTSGPVSGGTEITLCGKNLDSISV-VFVEVGVGEAPCTFL--PSSSTAIVCKTPPYHTIPGSVPVREVGLR 76 (90)
T ss_pred CCEEEEEccCcCcCCCCeEEEEeeecCCcceE-EEEEEEeCCEEeEEe--CCcceEEEEECCCCCCCCCCcCeEEEEEe
Confidence 59999999999999 8999999999998533 31 445567999987 447789999998876 3 4445 44443
No 11
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=98.69 E-value=5e-08 Score=82.77 Aligned_cols=69 Identities=29% Similarity=0.404 Sum_probs=59.6
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCCc
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGGE 79 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~~ 79 (887)
|+|+.|.|.+|+. ||.|||.|.|| ++++ .|.+|+.. .-.++++.+.|+|.|+|+..+|+|.|++.....
T Consensus 1 P~I~ai~P~eG~~tGGt~VtI~GenF---~~gl-~V~FG~~~--~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~ 71 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVIIIGDNF---FDGL-QVVFGTML--VWSELITPHAIRVQTPPRHIPGVVEVTLSYKSK 71 (85)
T ss_pred CcccEecCCCCcccCCeEEEEECCCC---CCCc-EEEECCEe--EEEEEeccceEEEecCCCCCCceEEEEEEECce
Confidence 8999999999999 99999999999 3445 89999985 224677889999999999999999999987643
No 12
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.69 E-value=3.8e-08 Score=89.68 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=49.6
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCC-CeeeEEEcCc---cCeeccccccCCEEEEEeCCCCc
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPN-DLIGLVICGC---DCLLSAEWKSPNKIIARSGPGKG 66 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~-di~~V~vg~~---~C~~~~~~~~~~~IvC~t~~~~~ 66 (887)
|+|++|+|..||. ||+|||+|+||+++.+ .+ .|++++. +|.+. +++.|+|.+++...
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~-~V~~~~~~~~~C~v~----s~~~i~C~tP~~~~ 63 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRI-RVKYGGVEKTSCKVR----NSTLMTCPAPSLAL 63 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEE-EEEECCceeccceeC----CCCEEEeCCCCCcc
Confidence 8999999999999 9999999999999864 45 7888997 99983 56889999987663
No 13
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=98.68 E-value=4.3e-08 Score=86.36 Aligned_cols=81 Identities=28% Similarity=0.439 Sum_probs=60.5
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC-ceeeEEEEEecCCccc
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK-GRGEIIVSTSLGGEGT 81 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~~g~v~V~v~~~~~~~ 81 (887)
|.|++|+|..|+. |+.|||.|.||+....++ .|.+|+..|... .+.+++.|.|.+++.. +..+|.|.+.......
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~-~v~i~~~~~~~~-~~~~~~~i~c~~p~~~~~~~~v~v~~~~~~~~~ 78 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNI-SVKIGGSQCTVI-TVVSSTQITCTSPALPSGNVNVSVTVNGQQIYS 78 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTE-EEEETTEEEEEE-GEEETTEEEEE--SCSSEEEEEEEEETTSEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCce-EEEECCEeeeEE-EEECCcEEEEEECCCCCccEEEEEEECCcCeEE
Confidence 8999999999999 999999999997776767 999999999875 2788999999998776 3445555544321233
Q ss_pred ceeeec
Q psy10164 82 CTIQFR 87 (887)
Q Consensus 82 s~~~F~ 87 (887)
....|+
T Consensus 79 ~~~~F~ 84 (85)
T PF01833_consen 79 NNTSFT 84 (85)
T ss_dssp EEEEEE
T ss_pred CCeeeE
Confidence 344553
No 14
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=98.67 E-value=9.2e-08 Score=83.56 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=59.1
Q ss_pred CCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC-ceeeEEEEEecC
Q psy10164 4 PPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK-GRGEIIVSTSLG 77 (887)
Q Consensus 4 ~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~~g~v~V~v~~~ 77 (887)
.|.|.+|.|..|++|+.|||+|++||.... +|++|+.+|.+. ..++++|+|.++... +.++|.|....+
T Consensus 2 ~P~I~~i~P~~g~~G~~VtI~G~gFg~~~~---~V~~g~~~a~v~--s~sdt~I~~~vP~~~aG~~~V~V~~~~G 71 (81)
T cd02849 2 TPLIGHVGPMMGKAGNTVTISGEGFGSAPG---TVYFGTTAATVI--SWSDTRIVVTVPNVPAGNYDVTVKTADG 71 (81)
T ss_pred CCEEeeEcCCCCCCCCEEEEEEECCCCCCc---EEEECCEEeEEE--EECCCEEEEEeCCCCCceEEEEEEeCCC
Confidence 599999999999999999999999986432 799999999986 568899999998873 778888886544
No 15
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=98.54 E-value=4.1e-07 Score=79.50 Aligned_cols=68 Identities=28% Similarity=0.370 Sum_probs=56.7
Q ss_pred CeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC-ceeeEEEEEecC
Q psy10164 5 PVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK-GRGEIIVSTSLG 77 (887)
Q Consensus 5 P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~~g~v~V~v~~~ 77 (887)
|.|.+|.|..|++|+.|||.|++||... - .|++|+.+|.+. ..+.++|.|.+|... +..+|.|....+
T Consensus 1 P~I~~i~P~~g~pG~~VtI~G~gFg~~~--~-~V~~g~~~a~v~--s~sdt~I~~~VP~~~~g~~~i~V~~~~G 69 (81)
T cd00604 1 PLIGSVGPVMGKPGNTVTISGEGFGSTG--G-TVYFGGTAAEVL--SWSDTSIVVEVPRVAPGNYNISVTTVDG 69 (81)
T ss_pred CeEeeEcCCCCCCCCEEEEEEECCCCCc--c-EEEECCEEEEEE--EECCCEEEEEeCCCCCCceEEEEEECCC
Confidence 8999999999999999999999998742 2 799999999987 668899999998765 455677775444
No 16
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.21 E-value=3.2e-06 Score=75.26 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=64.5
Q ss_pred ccccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHh
Q psy10164 157 SLENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEAN 225 (887)
Q Consensus 157 ~~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~ 225 (887)
.+++|+|..|+...-+..+..++.+-...|..+++..+++++.+||+||..||.|.++|..|..++..-
T Consensus 2 ~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l 70 (87)
T PF08700_consen 2 DSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSEL 70 (87)
T ss_pred CCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999888999999999999999999999999999999999999999999999999986443
No 17
>KOG3610|consensus
Probab=98.16 E-value=9.3e-06 Score=99.52 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=101.7
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCc-cCeeccccccCCE-EEEEeCCCC--ceeeEEEEEecC
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGC-DCLLSAEWKSPNK-IIARSGPGK--GRGEIIVSTSLG 77 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~-~C~~~~~~~~~~~-IvC~t~~~~--~~g~v~V~v~~~ 77 (887)
.|.+.+++|..||. ||++||+|++|.++ +++ .+.+||. +|.+. +..+.. |.|++++.. ...++.|.++..
T Consensus 142 ~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~g-s~~-~~vv~~~~~c~~~--~~~~~~~~~c~t~~~~~~~~~~~~v~f~~~ 217 (1025)
T KOG3610|consen 142 GPCFLSAEPVNGPASGGTQVHCTGSPLDTG-SCP-DCVVSGLGPCVIS--VVQDSAVIFCVTSSQGAGSEAPVLVSFDRT 217 (1025)
T ss_pred ceeEEeeccCcCCCCCCcceEEeccccccC-CCc-eEEecCCccceeE--eecCceEEEEecCCCCCCCccceEEEeccc
Confidence 48899999999999 99999999999999 667 8999999 99987 555555 999997766 356677777655
Q ss_pred Ccccceeee--------cccccCCCCCc------------------eeEEEEcC----cccccccccc--cccCCCCC--
Q psy10164 78 GEGTCTIQF--------RGYHETIGPLK------------------ESAVWIEE----APIQSLSWSR--RSMSPSSY-- 123 (887)
Q Consensus 78 ~~~~s~~~F--------~~~~P~~gp~~------------------~~~V~i~~----~~C~~~~~~~--~~tsps~~-- 123 (887)
........| .++.|.+...+ ++.|+..+ .+|. +..+. .+..|...
T Consensus 218 ~~~~~~~~f~y~~dps~~~i~P~~si~~gg~~i~v~G~~f~tVQ~~~i~~~~~~~~~~~~c~-i~~~t~~~c~~P~~~~~ 296 (1025)
T KOG3610|consen 218 PQKLTPLAFNYTADPSYSSVLPATSIKYGGRFITVNGTYFLTVQRPRLDVQTSGLRRIRACS-INNGTYMECQTPLIFIP 296 (1025)
T ss_pred ccccCCCCcccccCCcceeccceeeEeeCCEEEEEeeeeeeeccCceEEeeccceeeccccc-cccccceeeecccccCC
Confidence 432223334 33445555433 44555544 4887 66555 44334322
Q ss_pred -------CCCcCeEEEEecccccCCccccccCCCCCCCCCccccccccc
Q psy10164 124 -------QIEDPLGLSVEREDRKIPEDDLHELFPDGSGDLSLENFEPTW 165 (887)
Q Consensus 124 -------~~~dPLgl~v~~~~~~~~~~~~~~~F~~ys~dp~~~~f~P~~ 165 (887)
....+.++..|+. .. -...| .|.+||...-|.+..
T Consensus 297 ~~~~~~~~~~~~~~fl~d~~---~~---~~~~f-~~~~dp~f~~f~~~~ 338 (1025)
T KOG3610|consen 297 KRRRGTIERKVEYTFLQDAQ---LA---RQIGF-SYYPDPLFGVFAQSK 338 (1025)
T ss_pred cccccccccceeeeEEeech---hh---cccCc-eecCCceEEeecccc
Confidence 1123355555641 10 02469 999999999999997
No 18
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.05 E-value=0.00094 Score=73.33 Aligned_cols=195 Identities=10% Similarity=0.156 Sum_probs=157.1
Q ss_pred cccccccccccc-cC-CChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHH
Q psy10164 160 NFEPTWFLLDHH-HA-TSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKV 237 (887)
Q Consensus 160 ~f~P~~~l~~~~-~~-~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L 237 (887)
.|||..|.-..- .. .+.+++..-...+.+..+.-+..+...|-+|++.|+.+...++.+..++..... ....+
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~-----~~~~~ 86 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALV-----ICKNL 86 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 889988754333 33 567777777788888888778889999999999999999999999999876632 24677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC-cchHHH
Q psy10164 238 EIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK-TDVALF 316 (887)
Q Consensus 238 ~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~-~~~~~f 316 (887)
.+.|+.+......---.++..+.|-.++..++..|+..+.+.+.=..|+..++.|||..|++-+...+.++.. .+...+
T Consensus 87 R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~ 166 (291)
T PF10475_consen 87 RRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCV 166 (291)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHH
Confidence 7777777776555566778888888999999999999999999999999999999999999999999999865 566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHcCC
Q psy10164 317 KKVLFEVESNINDLRNMLRKKLKIM--PQTLQEQKTLIRNLVNLD 359 (887)
Q Consensus 317 ~~v~~eve~ii~~~r~~L~~~L~~~--~~s~~~~~~~I~~Ll~L~ 359 (887)
+.+-..+++....+.++|-..|... ....+.+.+++.--.-||
T Consensus 167 ~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLg 211 (291)
T PF10475_consen 167 RHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLG 211 (291)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 7777777777777777777777655 356677777777766666
No 19
>KOG2033|consensus
Probab=97.80 E-value=0.15 Score=59.86 Aligned_cols=193 Identities=14% Similarity=0.115 Sum_probs=144.0
Q ss_pred CChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHH-
Q psy10164 174 TSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLF- 252 (887)
Q Consensus 174 ~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~- 252 (887)
-+..++..-...++..|+..++++.++|-+-|--.+.|-|||..|+.- -++|.+.+.++......+.
T Consensus 17 hsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sl------------a~~L~~~I~~t~~ncrsL~a 84 (863)
T KOG2033|consen 17 HSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSL------------ADKLASDIANTRVNCRSLHA 84 (863)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhhhccc
Confidence 455666666778899999999999999999999999999999999874 2344444444333333322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC-----------cchHHH
Q psy10164 253 -----QDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK-----------TDVALF 316 (887)
Q Consensus 253 -----~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~-----------~~~~~f 316 (887)
.|-+..+. -+..+..+..-+-|.|.++|-.|..|+..+.+=.+..-|-.++.+-.+ .+.|+.
T Consensus 85 ~svA~tp~raeqn--p~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~nfP~l 162 (863)
T KOG2033|consen 85 NSVAKTPGRAEQN--PAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLKNFPAL 162 (863)
T ss_pred ccccCCcchhhcC--chhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHhhcHHH
Confidence 22222222 355667778889999999999999999999999999999999877552 466788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHcCCCCCCh---HHHHHHHHHHHHHHHHH
Q psy10164 317 KKVLFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIRNLVNLDAGGDP---GWDAIISQYEYITHLLE 381 (887)
Q Consensus 317 ~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~~~~dP---iw~~l~~~~~~l~~~l~ 381 (887)
.+=|.-++--=.++..+....|.+...+.....++..-++-|+. .|| .-.||+.|..|+...|+
T Consensus 163 ~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLde-sdpsqvLelFL~~Rk~~il~lLn 229 (863)
T KOG2033|consen 163 TNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDE-SDPSQVLELFLEKRKEHILHLLN 229 (863)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888666777777788888888777666655555555543 455 56699999999988775
No 20
>KOG2069|consensus
Probab=97.51 E-value=0.0085 Score=68.98 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=130.1
Q ss_pred cCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCC--CcchHHHHHHHHHHHHHH
Q psy10164 172 HATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGL--DPTIKVEIAIKKSMTEAT 249 (887)
Q Consensus 172 ~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~--~~~~~L~~~l~~~~~~a~ 249 (887)
.+..++++.+....|..++...+.+++.|--.||..|+.+-..+++++.++........+ .-...|.....+....+.
T Consensus 29 ~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f~~~~~ 108 (581)
T KOG2069|consen 29 TTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRFQDFAE 108 (581)
T ss_pred cCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHHHHHHH
Confidence 577899999999999999999999999999999999999889999999998766432110 001233333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHH
Q psy10164 250 KLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK-TDVALFKKVLFEVESNIN 328 (887)
Q Consensus 250 ~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~-~~~~~f~~v~~eve~ii~ 328 (887)
. .+++..--+.++.+......+.+||..|.+||+.|.|+.+.+--+-+.++-.. ...|++++|-.+++..+.
T Consensus 109 ~-------i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi~~i~~~v~~tv~ 181 (581)
T KOG2069|consen 109 E-------ISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVIQEIATEVEQTVQ 181 (581)
T ss_pred H-------hhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 2 22333334456666677788999999999999999999998765555555433 445999999999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHcCC
Q psy10164 329 DLRNMLRKKLKIMPQTLQEQKTLIRNLVNLD 359 (887)
Q Consensus 329 ~~r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~ 359 (887)
.+-.+|.++|..+- -.-+..+.|.||-...
T Consensus 182 ~ll~qL~~~l~~pl-~l~~cirvv~ylr~~~ 211 (581)
T KOG2069|consen 182 KLLEQLIQQLRTPL-QLPECIRVVGYLRRMA 211 (581)
T ss_pred HHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH
Confidence 99999999998652 3344555565655444
No 21
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.48 E-value=0.49 Score=57.45 Aligned_cols=159 Identities=15% Similarity=0.199 Sum_probs=111.0
Q ss_pred CChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcC----CCcchHHHHHHHHHHHHHH
Q psy10164 174 TSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHG----LDPTIKVEIAIKKSMTEAT 249 (887)
Q Consensus 174 ~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~----~~~~~~L~~~l~~~~~~a~ 249 (887)
-+-+++......|.+.++..+++.+..+.+||..|+....+.+++..+.+.-.++.. ....+.+...+.++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~---- 82 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAA---- 82 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH----
Confidence 355788888899999999999999999999999999888777777665433321110 000122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCc------chHHHHHHHHHH
Q psy10164 250 KLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKT------DVALFKKVLFEV 323 (887)
Q Consensus 250 ~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~------~~~~f~~v~~ev 323 (887)
..+-.-+++.+....+++++++.+-+=++=..+...++.|+|-.|++--.+++..+... +..+|+-+..|.
T Consensus 83 ---~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~ 159 (593)
T PF06248_consen 83 ---EELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEY 159 (593)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHH
Confidence 23334445556666666677776666666689999999999999999999999998862 345888777777
Q ss_pred HHHHHHHHHHH---HHhhc
Q psy10164 324 ESNINDLRNML---RKKLK 339 (887)
Q Consensus 324 e~ii~~~r~~L---~~~L~ 339 (887)
...-+.+...| |+++.
T Consensus 160 ~~lr~~L~~~L~~~w~~lv 178 (593)
T PF06248_consen 160 SELRENLQYQLSEEWERLV 178 (593)
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 77777777776 66664
No 22
>KOG2176|consensus
Probab=97.28 E-value=0.77 Score=55.29 Aligned_cols=562 Identities=11% Similarity=0.097 Sum_probs=278.1
Q ss_pred HHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 183 LSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERA 262 (887)
Q Consensus 183 ~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~ 262 (887)
...|...|++++.+...+-..||.-||.+-+-|.++..+.++-+.. +.++...+.++...--..-..+...|...
T Consensus 50 ~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~-----vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 50 MEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQ-----VSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888999999999999999999999998888886654322 23444445544444444456778888889
Q ss_pred HHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC------------cchHHHH-------------
Q psy10164 263 DKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK------------TDVALFK------------- 317 (887)
Q Consensus 263 ~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~------------~~~~~f~------------- 317 (887)
.++..|++.++..=...++-+++++.+++|.|=.|.+.-.--.+++-+ ...|..+
T Consensus 125 rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL~~~~~~~~~~~i~~~Ip~ik~~i~~~~~~~~~e 204 (800)
T KOG2176|consen 125 RNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYLPRVSNFRFLIVIQNRIPFIKEVIKSKSMSDFRE 204 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcccchhhHHHhhcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997776543333222111 1111111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHh-hccCCCCHHHHHHHHHHHH--cCCC------------------------
Q psy10164 318 ----------KVLFEVESNINDLRNMLRKK-LKIMPQTLQEQKTLIRNLV--NLDA------------------------ 360 (887)
Q Consensus 318 ----------~v~~eve~ii~~~r~~L~~~-L~~~~~s~~~~~~~I~~Ll--~L~~------------------------ 360 (887)
+|=..+-.+.+ ..++.|++ +.......+++.+.--..+ .++.
T Consensus 205 ~L~~irk~s~~iGq~ai~~~~-~ar~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e~d~~~~s~~~~~~~~~~~~~~~~ 283 (800)
T KOG2176|consen 205 WLENIRKKSPKIGQTAIQQAK-EARQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFEEDDEHDSIMIFQDLNELSGAIDK 283 (800)
T ss_pred HHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhhccchHHHhhhhhHHHHhcccccccccccccchhccCcccccchhee
Confidence 22233333333 22233442 1222222333322221111 1111
Q ss_pred -CCChHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCcccCCCCCCCchHHHHH-HHHHHHHHhhh
Q psy10164 361 -GGDPGWDAIISQY-EYITHLLESCKNEHMLLDVENSKPKKPKHTRSASGSHILEPAPVFVPQPILCV-EELTAIVSERF 437 (887)
Q Consensus 361 -~~dPiw~~l~~~~-~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~efv-~~l~~~l~~~l 437 (887)
+.+|...|+.-+. --+.+.++..++.-... ++...- +.+...+..+++. ++++.+
T Consensus 284 ~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~--q~~~~~---------------q~~~t~~~~l~~~~ty~~~i----- 341 (800)
T KOG2176|consen 284 FDFEPLYRCLHIHSVLGLRERFRAYYQMNRRL--QADLVL---------------QPPFTQLDSLEGYQTYFNQI----- 341 (800)
T ss_pred ecccHHHHHHHHHHHHhhHHHHHHHHHHhHHH--hhhccc---------------CCCcchhhHHHHHHHHHHHH-----
Confidence 1256544443211 11112222222221111 100000 0011122222222 222221
Q ss_pred hHHHhhhhhcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccchhchHHHHHHHHHHH
Q psy10164 438 PDLWKLGQSYFSGELQGTVEPTNQLMFKKIILDVVALSSKSIRSSVLPHTCDSSVKTFSLIYKESLGSHLPTALQYLCDL 517 (887)
Q Consensus 438 ~~fw~~~~~y~~g~~~~~~~~~~~~~~~~m~~~~i~~~~~li~~~~~~~s~~~~~~~~~g~~sls~~~~L~~~l~~i~~~ 517 (887)
.-|-++..++.-.... -....++..+-..++..++..++..+...+. + ..|-++=..|--.
T Consensus 342 -~Gffived~il~t~~~---~~s~~~ve~lW~~~i~k~v~~L~~~~s~~~t-~--------------~~ll~lKd~i~L~ 402 (800)
T KOG2176|consen 342 -AGFFIVEDHILRTTGG---FLSYNEVEELWDTAISKLVATLSYQSSRCQT-P--------------NHLLKLKDLIVLL 402 (800)
T ss_pred -hhHHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-h--------------hHHHHHHhHHHHH
Confidence 1233333333221111 0111467777778888999988888732111 1 1333333333334
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCCCCCcccchHHHHHHHHHHHHHHHH
Q psy10164 518 YSNLLALDLPTQALQIVSKLLFDLKLHTLLCLVKHCGSQIKELKHKENWQYEFNPNKGAITQLPKQIELLLSDMVQNIKT 597 (887)
Q Consensus 518 ~~~l~~l~~~~~~~~~l~~L~~~~r~~~~~ai~~~~~~d~~~l~~lEdW~~~~~~~~~~~T~lp~~~~~~~~~~l~~i~~ 597 (887)
...|..-+++ ++.|.+++..+|.+..+++...|.+-....-..++...-. +.+ +......+...-
T Consensus 403 ~~tl~~yg~~---V~~l~~~l~~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~------V~~-----e~~Ye~~v~~fp- 467 (800)
T KOG2176|consen 403 GATLENYGFN---VEPLYDLLVEIRDKYHEVLLRKWRKIFREALEKDDFMPMV------VKK-----EEEYEKNVLSFP- 467 (800)
T ss_pred HHHHHHcCCc---hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhcccccc------ccc-----HHHHhhhhhccc-
Confidence 4555544443 5678888889999999999999988766654443333211 000 111110010000
Q ss_pred hhccCC-------CCCCCccc-CchhhHHHHHHHHHHHHHHHHHHH-------HhhcCCCCCCCCC-ccccccCCCcccc
Q psy10164 598 NVLSKD-------DKDNPLFN-SDVAKHEFSIEVNKLLSAVVNLLD-------ELSSSSSDQEDNM-PVSQLIGSPLVYS 661 (887)
Q Consensus 598 il~~~~-------~~~~~iv~-~p~~~~~~~~~~~~~l~~~~~~l~-------~la~~~~~~~~~~-~~~~~~~~~~~~~ 661 (887)
+... |.-.++.. .|-.=.-+..++-.++.-+.+... +...+.......+ ..+-....+.
T Consensus 468 --~~~~e~~~~~Fp~~~pFS~mvP~~c~~~k~fi~~~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~vl~~~~~~~~--- 542 (800)
T KOG2176|consen 468 --FQNEELEPLPFPKTFPFSPMVPDVCTQAKKFIYACVKFLSDLVLLETEVLNKIRKDTNLLLTRSLVLSLTSSLPS--- 542 (800)
T ss_pred --cccccccCCCCcccCCCCcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 1111 11111111 011100111122222222222211 1000000000000 0000000000
Q ss_pred CcCCCCCCCcceEEEEecchHHHHHhhhHHHHHHHHHc-----C--CCCchHH-HHHHHHHHHHHHHHHHHHHHhhccch
Q psy10164 662 DKQLNGTFYEERLLLTLSNCQYICFFIFPRLDDLFIQN-----G--LPTIKES-LELSTENLVILENKLIENYIEIKSDP 733 (887)
Q Consensus 662 ~~~~~~~~~~~rlLLtLsNl~~l~~~~~p~L~~~f~~~-----f--~~~lt~~-~~~i~~~l~~l~~~Lf~~Yv~~~~~~ 733 (887)
.+ =.++.=++.|+.|+... ...|.+. + ....+.. ..+-.-.-++.+..=+..|++.|-+-
T Consensus 543 ------~~-lsq~~QI~~n~~~fe~a-----~~~f~~~a~~~~~~~~~~~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~ 610 (800)
T KOG2176|consen 543 ------LN-LSQAMQIAANLDYFEIA-----ADFFLEFACHLNGIPNRDAERPSSSTKLLASRKLAETELIELIKLKIDD 610 (800)
T ss_pred ------cc-HHHHHHHHHHHHHHHHh-----hHHHHHHHHHccCCccccccccccchhhhhhhhhHHHHHHHHHhhhhHH
Confidence 00 00111122333333321 2222221 1 1111111 01111123344444455677776665
Q ss_pred hhhhhhhhhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHhhcc--CCCCC
Q psy10164 734 LVGTIEPSMYLGHFEWDTVIPPIDLKPYAKEIIGNIITVHAELVRIVP-SVISKVISGIVETVAEELSRLMSC--VTKFS 810 (887)
Q Consensus 734 l~~~i~~~v~~~~~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~~~~p-~L~~~IL~~l~~~~~~~ll~~~~~--v~~fs 810 (887)
+-+.+ + .||-..-.|.++..|+-|++..|-++-+++.++.| .....+.-..++.++..+...+-. +++++
T Consensus 611 f~~l~-----~--~dW~t~e~pq~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~~~his~~iv~llldd~ik~is 683 (800)
T KOG2176|consen 611 FLELI-----E--YDWTTTEVPQGPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRELDHISTSIVGLLLDDSIKQIS 683 (800)
T ss_pred HHHHh-----h--ccccccccCCCccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 54443 4 89999999999999999999999999999999998 455556556666666666665533 48999
Q ss_pred ccchhhHhhhHHHHHHHhhh
Q psy10164 811 ECGKQQAFIDMSSLKNTLSQ 830 (887)
Q Consensus 811 ~~Gl~Qa~lDi~fl~~~L~~ 830 (887)
.++.+|.-+|+.++...-.+
T Consensus 684 ~~Ai~~fnlDv~~lEsfa~~ 703 (800)
T KOG2176|consen 684 MGAITNFNLDVNYLESFAAS 703 (800)
T ss_pred HHHHHccchhHHHHHHhccC
Confidence 99999999999998876655
No 23
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.99 E-value=0.073 Score=60.68 Aligned_cols=167 Identities=14% Similarity=0.209 Sum_probs=117.2
Q ss_pred ccccccccccccc-cCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHH
Q psy10164 159 ENFEPTWFLLDHH-HATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKV 237 (887)
Q Consensus 159 ~~f~P~~~l~~~~-~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L 237 (887)
++|||--|+...- ...|+.+|-.-...+...+..+++++...|.+--..=-.+...+...+..+ ..|
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i------------~~L 69 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAI------------QEL 69 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH------------HHH
Confidence 4688888888777 567788888778889999999999999888765422122222233332221 222
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy10164 238 EIAIKKSMTEATKLFQDV---------LARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLF 308 (887)
Q Consensus 238 ~~~l~~~~~~a~~~~~pl---------l~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~ 308 (887)
...|.++..+|+.-=.-| |+...| +|-.++.+|+|++-|.+-=..|+..+++++|..+..-|.-.+.|+
T Consensus 70 ~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKr--NLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 70 FEKISEIKSKAEESEQMVQEITRDIKQLDNAKR--NLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 222222222222111111 333333 788889999999999999999999999999999999999999987
Q ss_pred cC----cchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10164 309 GK----TDVALFKKVLFEVESNINDLRNMLRKKLK 339 (887)
Q Consensus 309 ~~----~~~~~f~~v~~eve~ii~~~r~~L~~~L~ 339 (887)
.. .++|-+..++..++.+=.+++.++.+.+.
T Consensus 148 ~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~ 182 (383)
T PF04100_consen 148 EHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDFE 182 (383)
T ss_pred HHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 67888889999999888888888777654
No 24
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.95 E-value=0.0015 Score=72.26 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHH
Q psy10164 716 VILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLKPYAKEIIGNIITVHAELVRIVP-SVISKVISGIVET 794 (887)
Q Consensus 716 ~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~~~~p-~L~~~IL~~l~~~ 794 (887)
+..|++|+ .-+..|.+-+ + .+.. +||.+...|.+.++||.+++..|-.+-+.+....| .+...+.....+.
T Consensus 143 ~~Ae~~I~-~lv~~KIDe~---l--ela~--yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~h 214 (311)
T PF04091_consen 143 KAAEKRIF-ELVNSKIDEF---L--ELAE--YDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDH 214 (311)
T ss_dssp THHHHHHH-HHHHHHHHHH---H--TT----TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH---H--hhcc--cceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445554 3344444444 2 3334 99998888899999999999999999988877777 5668899999999
Q ss_pred HHHHHHHhh--ccCCCCCccchhhHhhhHHHHHHHhhhh
Q psy10164 795 VAEELSRLM--SCVTKFSECGKQQAFIDMSSLKNTLSQY 831 (887)
Q Consensus 795 ~~~~ll~~~--~~v~~fs~~Gl~Qa~lDi~fl~~~L~~y 831 (887)
+++.+++.+ ..+++++.+|+.|.-+|+.|+......-
T Consensus 215 is~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~ 253 (311)
T PF04091_consen 215 ISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSL 253 (311)
T ss_dssp HHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999 8889999999999999999999988777
No 25
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.30 E-value=0.0059 Score=58.94 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=22.3
Q ss_pred ccccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchH
Q psy10164 157 SLENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIK 236 (887)
Q Consensus 157 ~~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~ 236 (887)
..+.|+|..|+.+.++..++++|.+-+..+... ++++|..+|.+||..||+--..+..+.+. +..
T Consensus 9 ~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~---L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~------------i~~ 73 (133)
T PF06148_consen 9 TKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKE---LKNELIELINDDYADFVSLSTNLVGMDEK------------IEE 73 (133)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHccHHHH------------HHH
Confidence 458999999999988999999999766655555 56799999999999999877776665543 355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy10164 237 VEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSL 281 (887)
Q Consensus 237 L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~L 281 (887)
+..+|.........+-+.+...++.++..-..+.-+..-+.+-.+
T Consensus 74 l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~ 118 (133)
T PF06148_consen 74 LRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLKL 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444444444443333
No 26
>KOG2307|consensus
Probab=96.02 E-value=4.3 Score=47.12 Aligned_cols=175 Identities=10% Similarity=0.130 Sum_probs=95.4
Q ss_pred ccccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcC--CCcc
Q psy10164 157 SLENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHG--LDPT 234 (887)
Q Consensus 157 ~~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~--~~~~ 234 (887)
..++|+.+.|+....+-..|+.|++ .|.-=.+.++.+|-.|+.+-|.-||+--..+-.|-..+.......+ .+-+
T Consensus 29 mkedFdve~f~s~~R~~v~letLrd---dLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei 105 (705)
T KOG2307|consen 29 MKEDFDVERFMSLARQKVDLETLRD---DLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEI 105 (705)
T ss_pred ccccCCHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHH
Confidence 4667888888888888888888875 4455556677899999999999999887665444443332211000 0001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCc
Q psy10164 235 IKVEIAIKKSMTEATKLFQDVLARRERADKTRN---ALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKT 311 (887)
Q Consensus 235 ~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~---~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~ 311 (887)
.++.+++.+....-.+--...-..|++-.-++. ++..++|..-+.+-|.+=.+.++.-+.+.+--+.++++......
T Consensus 106 ~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnqlkf~a~h~ 185 (705)
T KOG2307|consen 106 KSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQLKFHASHL 185 (705)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHHHHHh
Confidence 223333333333333233334444444443333 33334455555444443333455556777777888887765431
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10164 312 DVALFKKVLFEVESNINDLRNMLRKKL 338 (887)
Q Consensus 312 ~~~~f~~v~~eve~ii~~~r~~L~~~L 338 (887)
+.-.+...+..|+..+..|.+.|
T Consensus 186 ----k~~l~p~~e~ria~~~~~L~qsl 208 (705)
T KOG2307|consen 186 ----KGSLFPHSEERIAAEKIILSQSL 208 (705)
T ss_pred ----hcccCcchhhHHhhHHHHHHHHH
Confidence 11233334444455444444333
No 27
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=95.97 E-value=0.065 Score=51.63 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=95.0
Q ss_pred ccccccccccccccc-----cCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCC
Q psy10164 157 SLENFEPTWFLLDHH-----HATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGL 231 (887)
Q Consensus 157 ~~~~f~P~~~l~~~~-----~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~ 231 (887)
-+++|+|..|-...- ...+=-++..++..|...|+..+..+.+.|.+|++..++....+..+..-+.....
T Consensus 4 l~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~---- 79 (132)
T PF10392_consen 4 LSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRS---- 79 (132)
T ss_pred CCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHH----
Confidence 467888888876554 34556677889999999999999999999999999999999888887774332211
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHH
Q psy10164 232 DPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLS 284 (887)
Q Consensus 232 ~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~ 284 (887)
-++.|..+.+.+...--.=|..+.......+++..+..+|++--.++.|-.+
T Consensus 80 -~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L~~r 131 (132)
T PF10392_consen 80 -SVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQLVRR 131 (132)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1477777777777777777777888888888888888888887777666443
No 28
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=95.29 E-value=0.097 Score=62.01 Aligned_cols=124 Identities=17% Similarity=0.273 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCCCCCCCC-----CCCCChHHHHHHHHHHHHHHHHhh-cchhh
Q psy10164 710 LSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIP-----PIDLKPYAKEIIGNIITVHAELVR-IVPSV 783 (887)
Q Consensus 710 ~i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~-----p~~Vr~yv~e~L~~LV~Vhsev~~-~~p~L 783 (887)
+....+..+.+++.+.++..-...+...+++.+.. -.|..... |..+++-.-..|..|-..=+-+.+ ++|..
T Consensus 302 e~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~--~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~ 379 (494)
T PF04437_consen 302 ETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKR--SQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPAD 379 (494)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT----GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--cCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 35566778888888888888888888888888875 78866543 478999888888888777776664 56778
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCccchhhHhhhHHHHHHHhhhhcchh
Q psy10164 784 ISKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQYCTDS 835 (887)
Q Consensus 784 ~~~IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Qa~lDi~fl~~~L~~y~t~~ 835 (887)
+.+|-..+...+...|.+.+=...+||..|..|.+.|++.|-.+|..|....
T Consensus 380 f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p 431 (494)
T PF04437_consen 380 FRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRP 431 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhccCH
Confidence 8889999999999999997766789999999999999999999999986653
No 29
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=94.52 E-value=0.15 Score=44.62 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=48.2
Q ss_pred CCCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC
Q psy10164 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK 65 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~ 65 (887)
-|-|+|.++.=.-|--..++.++|+||-.. . +|.+|+.+..-. |.+.+.+.|.+++.+
T Consensus 3 TPvPvV~sl~lnGggdvamlEl~GenF~pn---L-kVWFG~veaeTm--yR~~e~l~CvvPdis 60 (97)
T cd01176 3 TPVPVVSSLELNGGGDVAMLELHGENFTPN---L-KVWFGDVEAETM--YRCEESLLCVVPDIS 60 (97)
T ss_pred cccceEeEEEEcCCCcEEEEEEecCcCCCC---c-eEEECCcceEEE--EEccceeEEecCCHH
Confidence 478999998877666689999999999333 4 899999988765 899999999998764
No 30
>KOG3691|consensus
Probab=94.34 E-value=1.7 Score=52.79 Aligned_cols=132 Identities=9% Similarity=0.050 Sum_probs=107.9
Q ss_pred CChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q psy10164 174 TSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQ 253 (887)
Q Consensus 174 ~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~ 253 (887)
.+.+.....+..|...-+.-+.+++.||.++..-|-.|-.+-.++-+.+.+... -+-.++++|..+...-+.--+
T Consensus 43 e~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~re-----rI~~vK~~L~~~k~ll~~~rd 117 (982)
T KOG3691|consen 43 EDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRE-----RIHNVKNNLEACKELLNTRRD 117 (982)
T ss_pred CcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCHH
Confidence 455566666777777777778889999999999998888887777766554321 156778888887777666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC
Q psy10164 254 DVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK 310 (887)
Q Consensus 254 pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~ 310 (887)
.|.+--.+..+.+.++++|++.+.+-.+|.++..+|.++.|-+|-+--.+|..+++.
T Consensus 118 eLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng 174 (982)
T KOG3691|consen 118 ELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNG 174 (982)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777788889999999999999999999999999999999999999999988876
No 31
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=92.54 E-value=1.1 Score=43.78 Aligned_cols=124 Identities=7% Similarity=0.095 Sum_probs=87.2
Q ss_pred cccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHH
Q psy10164 158 LENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKV 237 (887)
Q Consensus 158 ~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L 237 (887)
...|+|-.--.+.-..++.+ +......+...-+..+.+++.+|.+||..|=++-.+--.|...+..... .+..+
T Consensus 18 ~~~~~pv~~al~~ld~ss~g-~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~-----~i~~l 91 (142)
T PF04048_consen 18 TDDFNPVELALSLLDDSSVG-RAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQE-----RIREL 91 (142)
T ss_pred cCCCcHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 44555543333333344432 2223344444445566889999999999999999888888887766532 15677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHH
Q psy10164 238 EIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISN 287 (887)
Q Consensus 238 ~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~ 287 (887)
++.|.++...=..--..|.+-..+..+.+.++.+|.....+-.+|.+|.+
T Consensus 92 K~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 92 KESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 77777777665555567777778888899999999999999999998854
No 32
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=91.14 E-value=0.25 Score=43.68 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=24.4
Q ss_pred eeEEEEcCcccccccccc----cc-cCCCCCCCCcCeEEEEecc
Q psy10164 98 ESAVWIEEAPIQSLSWSR----RS-MSPSSYQIEDPLGLSVERE 136 (887)
Q Consensus 98 ~~~V~i~~~~C~~~~~~~----~~-tsps~~~~~dPLgl~v~~~ 136 (887)
...|++|+.+|. +...+ .| +++....+..++.|.+|+.
T Consensus 31 ~~~V~ig~~~C~-~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~ 73 (85)
T cd01179 31 SVRVTVGGQPCK-ILSVSSSQIVCLTPPSASPGEAPVKVLIDGA 73 (85)
T ss_pred eEEEEECCeEee-EEEecCCEEEEECCCCCCCceEEEEEEECCc
Confidence 478999999998 54433 45 4443333345677788764
No 33
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=90.90 E-value=0.72 Score=48.13 Aligned_cols=57 Identities=25% Similarity=0.354 Sum_probs=44.2
Q ss_pred CCEEEEEeccCCCCC------------CCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecC
Q psy10164 18 GTRVTIRGENLGKQP------------NDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLG 77 (887)
Q Consensus 18 GT~ltI~G~nlg~~~------------~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~ 77 (887)
|..+||.|.||+-.. ..+ +|+|+|++.-+. |.+..+|-|.++..-..|...|.+...
T Consensus 5 G~~vsIfG~~L~~~t~~~~~~plpt~l~Gv-~V~vnG~~APl~--yvSp~QIN~qvP~~~~~g~~~v~V~~~ 73 (215)
T TIGR03437 5 GSIVSIFGTNLAPATLTAAGGPLPTSLGGV-SVTVNGVAAPLL--YVSPGQINAQVPYEVAPGAATVTVTYN 73 (215)
T ss_pred CcEEEEEeccCCCccccccCCCCccccCCe-EEEECCEEEEEE--EeCcceEEEEeCCCcCCCcEEEEEEeC
Confidence 899999999998532 334 899999999987 999999999998765445555555443
No 34
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=90.19 E-value=6 Score=42.04 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh------hcchhhHHH
Q psy10164 713 ENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLKPYAKEIIGNIITVHAELV------RIVPSVISK 786 (887)
Q Consensus 713 ~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~------~~~p~L~~~ 786 (887)
+...++-.-++......- .++. -+-..|.. ..|.-.--+.+-++||..++-.+-.....+. .+.+++..-
T Consensus 49 ~~v~dLr~~iy~~~a~~~-l~~~-~i~~~Ia~--vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~ 124 (234)
T PF10474_consen 49 SAVPDLREPIYKCVASRL-LDLE-QILNSIAN--VKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNV 124 (234)
T ss_pred HHHHHHHHHHHHHHHHHH-cCHH-HHHHHHHH--cCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 344445544444433332 2333 23345555 7897666678889999999999998888773 345567778
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccchhhHhhhHHHHHHHhhhhcch
Q psy10164 787 VISGIVETVAEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQYCTD 834 (887)
Q Consensus 787 IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Qa~lDi~fl~~~L~~y~t~ 834 (887)
+...++..+.+.|++.|..+++=|..|--+.++|..-|+.-|+.....
T Consensus 125 lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~ 172 (234)
T PF10474_consen 125 LWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGI 172 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999999999999877654
No 35
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=89.99 E-value=62 Score=40.64 Aligned_cols=209 Identities=11% Similarity=0.109 Sum_probs=119.7
Q ss_pred Cccccccccccccccc----cCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHH----hhhHHHHHHHHHHHHhhh
Q psy10164 156 LSLENFEPTWFLLDHH----HATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVM----EQMDTLFIFKEKFEANVK 227 (887)
Q Consensus 156 p~~~~f~P~~~l~~~~----~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi----~akdtid~~~~~~~~~~~ 227 (887)
.+..+|||+.++...- ...+.+..-+....|..+++-...+.-.-+++.-..-+ ++---++.|+.+...-..
T Consensus 5 f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~ 84 (766)
T PF10191_consen 5 FSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQE 84 (766)
T ss_pred hCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3567899998876543 33333444333445555544444444444555555544 233334444444322211
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy10164 228 EHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNL 307 (887)
Q Consensus 228 ~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l 307 (887)
. +..+.+.++.+...+......|.+-..=-.++..+...|+.-.-.=.|-+.+..-++.|||+.+-+--..++.-
T Consensus 85 ----~-~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~s 159 (766)
T PF10191_consen 85 ----Q-MASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRS 159 (766)
T ss_pred ----H-HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1 24555555555555555555555544444567777788888888888999999999999999887666665542
Q ss_pred hcC-cchHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q psy10164 308 FGK-TDVALFKKVLFEVESNINDLRNMLRKKLKIM------PQTLQEQKTLIRNLVNLDAGGDPGWDAIISQY 373 (887)
Q Consensus 308 ~~~-~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~------~~s~~~~~~~I~~Ll~L~~~~dPiw~~l~~~~ 373 (887)
+.- .+.|= |+|-...++.++++|-..+... ...+++...++.++-.+|-.+.=--+|-.+|.
T Consensus 160 L~~l~~~pd----~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~ 228 (766)
T PF10191_consen 160 LAVLQDVPD----YEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRK 228 (766)
T ss_pred HHHHcCCCc----hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221 22222 3555666666666654444311 25678888888888888743332333333333
No 36
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=89.09 E-value=0.55 Score=42.37 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=24.7
Q ss_pred eeEEEEcCccccccc---ccc----cc-cCCCCCC-CCcCeEEEEecc
Q psy10164 98 ESAVWIEEAPIQSLS---WSR----RS-MSPSSYQ-IEDPLGLSVERE 136 (887)
Q Consensus 98 ~~~V~i~~~~C~~~~---~~~----~~-tsps~~~-~~dPLgl~v~~~ 136 (887)
...|+||+.+|. +. ... .| ++|+... ...++.|.+++.
T Consensus 34 ~~~V~ig~~~C~-i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~~ 80 (94)
T cd01180 34 RHGVRVGGVPCN-PEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGHG 80 (94)
T ss_pred eeEEEECCEECc-ccCCCcCcCCEEEEECCCCCCCCcceEEEEEECCc
Confidence 368999999998 54 211 34 5554432 467788888754
No 37
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=87.76 E-value=0.96 Score=41.26 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=24.2
Q ss_pred eeEEEEcCc---ccccccccc--cccCCCCCC-------CCcCeEEEEecc
Q psy10164 98 ESAVWIEEA---PIQSLSWSR--RSMSPSSYQ-------IEDPLGLSVERE 136 (887)
Q Consensus 98 ~~~V~i~~~---~C~~~~~~~--~~tsps~~~-------~~dPLgl~v~~~ 136 (887)
.+.|++++. +|. +.+.+ .|.+|+... ...|+.+.+|..
T Consensus 33 ~~~V~~~~~~~~~C~-v~s~~~i~C~tP~~~~~~~~~~~~~~~~~~~fd~~ 82 (99)
T cd01181 33 RIRVKYGGVEKTSCK-VRNSTLMTCPAPSLALLNRSPEPGERPVEFGLDGD 82 (99)
T ss_pred EEEEEECCceeccce-eCCCCEEEeCCCCCcccccccCCCCcCeEEEEecc
Confidence 678888887 998 66555 675555432 345666666643
No 38
>KOG2180|consensus
Probab=85.66 E-value=78 Score=38.40 Aligned_cols=168 Identities=10% Similarity=0.107 Sum_probs=98.7
Q ss_pred ccccccccccccc-cCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHH
Q psy10164 159 ENFEPTWFLLDHH-HATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKV 237 (887)
Q Consensus 159 ~~f~P~~~l~~~~-~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L 237 (887)
+.|+---|+...- ...|+..+-.-...+..+|+..+..++.+|..+=|.=-+.+..+++....+ .+|
T Consensus 17 ~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai------------~eL 84 (793)
T KOG2180|consen 17 PEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAI------------EEL 84 (793)
T ss_pred cchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHH------------HHH
Confidence 3344444444333 345555555445567777887777777777766665555555554444432 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC
Q psy10164 238 EIAIKKSMTEATKLFQDVLARRERA-------DKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK 310 (887)
Q Consensus 238 ~~~l~~~~~~a~~~~~pll~~r~k~-------~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~ 310 (887)
...|.++.+.|+.-=.-+.+--..+ .+|-.++..|+|++-|..==-+|...+.++.|..+++-|.-...+++.
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 4444444444333322222222222 256677888999999888888899999999999999999988888763
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10164 311 ----TDVALFKKVLFEVESNINDLRNMLRKKL 338 (887)
Q Consensus 311 ----~~~~~f~~v~~eve~ii~~~r~~L~~~L 338 (887)
.+++=+...-.-++++=..+..++.+.+
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df 196 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDF 196 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444
No 39
>KOG4424|consensus
Probab=83.15 E-value=14 Score=43.30 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=92.5
Q ss_pred hHHhhhHHHHHHHHH-HHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHH
Q psy10164 207 SVMEQMDTLFIFKEK-FEANVKEHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSI 285 (887)
Q Consensus 207 kFi~akdtid~~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L 285 (887)
.||.+..-+|++.-. +.... ....+++-.|-.++..+...-.+.+-|.+..|. +-.+++|+-.|+.+
T Consensus 80 ~Yv~~L~lLd~~F~~~L~~~~-~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~-------Iadv~qKlAPFLKm---- 147 (623)
T KOG4424|consen 80 TYVKRLHLLDQVFCRRLLEEA-SIPADVITGLFGNISSIHNFHGQFLLPELEKRI-------IADVFQKLAPFLKM---- 147 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH-------HHHHHHHhhhHHHH----
Confidence 566666666665432 11111 111233466777777777777777888777776 67788999998877
Q ss_pred HHHHhhcCHHHHHHHHHHHHHhhcC-cch-HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH-HHHHHHHHcCCCCC
Q psy10164 286 SNNITKNDIDAVINDYARAMNLFGK-TDV-ALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQ-KTLIRNLVNLDAGG 362 (887)
Q Consensus 286 ~~~i~~~dy~~~v~dY~kak~l~~~-~~~-~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~-~~~I~~Ll~L~~~~ 362 (887)
|..-+.+|.+|..++.+ ++. +.|++|.+++++.-.-=.-.|.-.|..|-.-+--+ +-+=+||+.| +++
T Consensus 148 --------YseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~l-p~~ 218 (623)
T KOG4424|consen 148 --------YSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYL-PPD 218 (623)
T ss_pred --------HHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhC-CCC
Confidence 88999999999999998 454 89999999999876544445555555442222222 3333455555 556
Q ss_pred ChHHHHHHH
Q psy10164 363 DPGWDAIIS 371 (887)
Q Consensus 363 dPiw~~l~~ 371 (887)
||=|.=+..
T Consensus 219 d~D~~d~~k 227 (623)
T KOG4424|consen 219 DPDYKDLKK 227 (623)
T ss_pred CcchHHHHH
Confidence 664443333
No 40
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=79.42 E-value=2.5 Score=36.98 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=38.2
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEc-CccC-eeccccccCCEEEEEeCCCC--ceeeEEEEEec
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVIC-GCDC-LLSAEWKSPNKIIARSGPGK--GRGEIIVSTSL 76 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg-~~~C-~~~~~~~~~~~IvC~t~~~~--~~g~v~V~v~~ 76 (887)
.|.|++++|..-.. .|.|||.|.||+ .++ .++ |..- .+ .+.+..+++-....+. ..|...|.+..
T Consensus 1 ~p~i~aV~P~~lkaG~~t~vti~Gt~L~---~~v---~l~~Gv~v~~v--~~~s~~~v~v~V~~aa~a~~G~~~v~vg~ 71 (81)
T PF09099_consen 1 APTILAVSPAGLKAGEETTVTIVGTGLA---GTV---DLGPGVEVLKV--VSASPDEVVVRVKAAADAAPGIRTVRVGS 71 (81)
T ss_dssp SSEEEEEESSEEETTCEEEEEEEEES-T---T-E---E--TTEEEEEE--EEE-STCEEEEEEEECTSSSEEEEEEETT
T ss_pred CCeEEEECchhccCCCeEEEEEEecCcc---cce---ecCCCeEEEEE--EEeCCCEEEEEEEEcCCCCCccEEEEecc
Confidence 48999999998777 459999999992 222 222 2111 11 2456677776443333 46777777754
No 41
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=78.09 E-value=7.9 Score=35.29 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=49.7
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEc----Cc-----cCeeccccccCCEEEEEeCCCC---ceeeE
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVIC----GC-----DCLLSAEWKSPNKIIARSGPGK---GRGEI 70 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg----~~-----~C~~~~~~~~~~~IvC~t~~~~---~~g~v 70 (887)
|.|...+-.+|+. |-.|-+.|.|+.. |+.-++.- |. .-.+.........|+|+|+|=. ...||
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~k---DikV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~~I~~pV 78 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLK---DSKVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNKHVAAPV 78 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCC---CCEEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCCCcCCce
Confidence 8999999999999 9999999999944 45223331 11 1112212233466999999876 24555
Q ss_pred EEEEe--cCCcccc-eeeeccc
Q psy10164 71 IVSTS--LGGEGTC-TIQFRGY 89 (887)
Q Consensus 71 ~V~v~--~~~~~~s-~~~F~~~ 89 (887)
.|.+. .+....| ...|+++
T Consensus 79 ~V~~~l~~~~~~~S~~~~FtY~ 100 (101)
T cd01178 79 QVQFYVVNGKRKRSQPQTFTYT 100 (101)
T ss_pred EEEEEEEcCCCCcCCCCCcEec
Confidence 55543 3322223 4566553
No 42
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=75.75 E-value=1.1e+02 Score=36.76 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=94.2
Q ss_pred eEEEEecchHHHHHhhhHHHHHHHHHcCCCCch----HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCC
Q psy10164 673 RLLLTLSNCQYICFFIFPRLDDLFIQNGLPTIK----ESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFE 748 (887)
Q Consensus 673 rlLLtLsNl~~l~~~~~p~L~~~f~~~f~~~lt----~~~~~i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~d 748 (887)
.++-+++|+..++. .+..+...+.+.-..... .....+.+.+..+.+...+..++.--.-|...+.+-+ + ..
T Consensus 317 yliA~~N~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lf-t--~~ 392 (566)
T PF06046_consen 317 YLIAVANNCLRCRD-YVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLF-T--KK 392 (566)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTT-S--GG
T ss_pred HHHHHhccHHHHHH-HHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC-c--Cc
Confidence 45555666666665 555566666554332111 2222344455555554333333333333444443333 4 89
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHhhccCC------CCCccchhhHhhhH
Q psy10164 749 WDTVIPPIDLKPYAKEIIGNIITVHAELVR-IVPSVISKVISGIVETVAEELSRLMSCVT------KFSECGKQQAFIDM 821 (887)
Q Consensus 749 W~~~~~p~~Vr~yv~e~L~~LV~Vhsev~~-~~p~L~~~IL~~l~~~~~~~ll~~~~~v~------~fs~~Gl~Qa~lDi 821 (887)
|... +.|..++..+--....... +.|++...++.++...+..+.++++..-+ .-...+.-|+.-|+
T Consensus 393 W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~ 465 (566)
T PF06046_consen 393 WYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDA 465 (566)
T ss_dssp GCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHH
T ss_pred CcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHH
Confidence 9855 8888888888888888888 88999999999999999777777765421 22567889999999
Q ss_pred HHHHHHhhhhc
Q psy10164 822 SSLKNTLSQYC 832 (887)
Q Consensus 822 ~fl~~~L~~y~ 832 (887)
+-|...|..|.
T Consensus 466 ~~l~~~F~~~~ 476 (566)
T PF06046_consen 466 EQLKSFFSKLG 476 (566)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999999
No 43
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.49 E-value=1.6e+02 Score=31.75 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=35.3
Q ss_pred hcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10164 291 KNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKK 337 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~ 337 (887)
..+|...+..|++++.-+...-..+|++.++-=++.+.-+|..||.-
T Consensus 163 ~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~ 209 (261)
T cd07674 163 AESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGY 209 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33588888888888777775555577777777778888888888765
No 44
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=69.03 E-value=4.2 Score=30.17 Aligned_cols=22 Identities=18% Similarity=0.557 Sum_probs=19.0
Q ss_pred HHhhcCHHHHHHHHHHHHHhhc
Q psy10164 288 NITKNDIDAVINDYARAMNLFG 309 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~ 309 (887)
+++.++|++|+.||.+|..+..
T Consensus 11 sle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 11 SLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHhccHHHHHHHHHHHHHHHH
Confidence 5789999999999999986644
No 45
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=68.28 E-value=2.3e+02 Score=33.87 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHH
Q psy10164 234 TIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDA 296 (887)
Q Consensus 234 ~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~ 296 (887)
...+...|..+...+..+..-+-.||...++|...++-+ -+|-.|.+.|-.|+-+.
T Consensus 44 L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i-------~ipP~lI~~I~~~~v~e 99 (508)
T PF04129_consen 44 LGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI-------VIPPDLIRSICEGPVNE 99 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------cCCHHHHHhHhcCCCCH
Confidence 378888999999999999999999998888887766543 38999999999998776
No 46
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=63.70 E-value=21 Score=32.75 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=49.5
Q ss_pred CeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCcc---C------eeccccccCCEEEEEeCCCC---ceeeE
Q psy10164 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCD---C------LLSAEWKSPNKIIARSGPGK---GRGEI 70 (887)
Q Consensus 5 P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~---C------~~~~~~~~~~~IvC~t~~~~---~~g~v 70 (887)
|.|..++-.+||. |..+.+.|.++.. .|+ .|.++... + .+....+....|||.|++-. ...||
T Consensus 1 l~I~r~s~~s~~~~GG~ev~Ll~~k~~k--~di-kV~F~e~~~g~~~WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~pV 77 (101)
T cd00602 1 LPICRVSSLSGSVNGGDEVFLLCDKVNK--PDI-KVWFGEKGPGETVWEAEAMFRQEDVRQVAIVFKTPPYHNKWITRPV 77 (101)
T ss_pred CceEEEeCCeeEcCCCcEEEEEecCCCC--CCC-EEEEEecCCCCCeEEEEEEECHHHceEeEEEecCCCcCCCCccccE
Confidence 4677788899999 9999999999966 567 67666521 1 11111112345888888766 24455
Q ss_pred EEEE--ecC-Cccc-ceeeeccc
Q psy10164 71 IVST--SLG-GEGT-CTIQFRGY 89 (887)
Q Consensus 71 ~V~v--~~~-~~~~-s~~~F~~~ 89 (887)
.|.+ ... +... .+..|++.
T Consensus 78 ~V~i~L~r~~~~~~S~~~~FtY~ 100 (101)
T cd00602 78 QVPIQLVRPDDRKRSEPLTFTYT 100 (101)
T ss_pred EEEEEEEeCCCCeecCCcCeEEc
Confidence 5544 333 2222 34566653
No 47
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=59.66 E-value=13 Score=32.78 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=24.4
Q ss_pred eeEEEEcCcccccccccc----cccCCCCCC-CCcCeEEEEecc
Q psy10164 98 ESAVWIEEAPIQSLSWSR----RSMSPSSYQ-IEDPLGLSVERE 136 (887)
Q Consensus 98 ~~~V~i~~~~C~~~~~~~----~~tsps~~~-~~dPLgl~v~~~ 136 (887)
+..|++|+.+|. +...+ .|..|.... +..++.+.+++.
T Consensus 32 ~~~V~ig~~~C~-~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~ 74 (90)
T cd00603 32 RVRVTVGGVPCK-VLNVSSTEIVCRTPAAATPGEGPVEVTVDGA 74 (90)
T ss_pred eEEEEECCEECc-EEecCCCEEEEECCCCCCCCcEeEEEEECCc
Confidence 588999999998 44322 454454332 246787777754
No 48
>KOG2347|consensus
Probab=57.09 E-value=8.9 Score=46.97 Aligned_cols=225 Identities=9% Similarity=0.001 Sum_probs=131.9
Q ss_pred CCccccccccccccccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhh-hhcCCCc
Q psy10164 155 DLSLENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANV-KEHGLDP 233 (887)
Q Consensus 155 dp~~~~f~P~~~l~~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~-~~~~~~~ 233 (887)
+-....++|..|....|..-+ .+..+...+.. ++.+.-.+...+.-|+.++.... -.+..+..++... ....
T Consensus 84 ~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~-~~~~~~~~~~~~~~~~t~l~~~~-~l~~~i~~~k~~~~~d~~--- 156 (934)
T KOG2347|consen 84 LSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE-QQDQRKVPGRLKGVALTSLQSEP-PLGECIEPLKLKINEDNK--- 156 (934)
T ss_pred ccCccccCchhhhhhhHhhhc--cchhhhhhccc-ccccccccccccccCCcccccCC-CcccccCchhhcchhhhh---
Confidence 445666777777776664433 44444444433 34455556666777777777766 3333333322221 0000
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC---
Q psy10164 234 TIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK--- 310 (887)
Q Consensus 234 ~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~--- 310 (887)
+.......+ . +..+---++.+.+-.+.-........+.-+|+-|+.|+..+.++-+++++.+|+.|...-.+-.+
T Consensus 157 ~lfp~~~~D-l-~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~ 234 (934)
T KOG2347|consen 157 TLFPITSVD-L-RSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLER 234 (934)
T ss_pred hhccccccc-c-ccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhc
Confidence 000000011 0 11122224566666777777777777888899999999999999999999999999998666332
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH------HHcC----------C-------CCCC
Q psy10164 311 ----TDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIRN------LVNL----------D-------AGGD 363 (887)
Q Consensus 311 ----~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~~------Ll~L----------~-------~~~d 363 (887)
-|...-+++|.-++... ..++.+|+.+.......|.--..... |..| | .-+.
T Consensus 235 ~e~~~~gs~t~~l~n~i~~~~-s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYek 313 (934)
T KOG2347|consen 235 GEEDPHGSGTTKLENCIKNST-SRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEK 313 (934)
T ss_pred cccCccchHHHHHHHHHHHhh-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhh
Confidence 23345667888888777 88899999887553211111111111 1111 1 1236
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 364 PGWDAIISQYEYITHLLESCKNEHML 389 (887)
Q Consensus 364 Piw~~l~~~~~~l~~~l~~~~~~~~~ 389 (887)
|.-.|..+...-++..|++.-.++..
T Consensus 314 AKsl~~~t~v~~Fkk~l~Eve~~m~~ 339 (934)
T KOG2347|consen 314 AKSLFGKTEVNLFKKVLEEVEKRMQS 339 (934)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHH
Confidence 67777777777777777765555544
No 49
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=56.28 E-value=82 Score=29.88 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=68.0
Q ss_pred HHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH
Q psy10164 268 ALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQE 347 (887)
Q Consensus 268 ~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~ 347 (887)
...+|..++.+-.|...+....+.|++|.+|.- -.+|-.-|+.++. .=...+.+..+
T Consensus 4 ~~~ll~~Yq~I~~lS~~ML~aA~~g~Wd~Li~l-------------------E~~y~~~Ve~l~~----~~~~~~l~~~~ 60 (121)
T PRK10548 4 APHLLSAWQQILTLSQSMLRLATEGQWDELIEQ-------------------EVAYVQAVEEIAH----LTIPPDISTVM 60 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-------------------HHHHHHHHHHHHh----cCCCCCCCHHH
Confidence 456789999999999999999999999999843 2222222222222 22233456777
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 348 QKTLIRNLVNLDAGGDPGWDAIISQYEYITHLLESCKNE 386 (887)
Q Consensus 348 ~~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~~~~~~ 386 (887)
+..+..+|-++=.++.-|-.-+..+.+.|...|.....+
T Consensus 61 q~~~~~lL~~IL~nda~Ir~Llq~rl~eL~~li~~~~rq 99 (121)
T PRK10548 61 QEQLRPMLRQILDNEAELKQLLQQRMDELSSLIGQSTRQ 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 777777777776677778888888988888888765443
No 50
>KOG4603|consensus
Probab=55.94 E-value=1.5e+02 Score=29.60 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhh
Q psy10164 212 MDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITK 291 (887)
Q Consensus 212 kdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~ 291 (887)
++|+..|-.+++.-.+... +..+.+ ....+=..+-+.++|..+++...+. +..
T Consensus 99 ~~t~s~veaEik~L~s~Lt---~eemQe-------~i~~L~kev~~~~erl~~~k~g~~~-----------------vtp 151 (201)
T KOG4603|consen 99 QQTCSYVEAEIKELSSALT---TEEMQE-------EIQELKKEVAGYRERLKNIKAGTNH-----------------VTP 151 (201)
T ss_pred HHHHHHHHHHHHHHHHhcC---hHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccc-----------------CCH
Confidence 4566666666544322111 233333 3444556777888888888877654 445
Q ss_pred cCHHHHHHHHHHHH
Q psy10164 292 NDIDAVINDYARAM 305 (887)
Q Consensus 292 ~dy~~~v~dY~kak 305 (887)
.|-+++-+.|.++-
T Consensus 152 edk~~v~~~y~~~~ 165 (201)
T KOG4603|consen 152 EDKEQVYREYQKYC 165 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777777776
No 51
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=54.85 E-value=5.1e+02 Score=32.27 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=86.7
Q ss_pred HHHHHHHhhccchhhhhhhhhhccCCCCCCCCCCC----CCCChHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHH
Q psy10164 721 KLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPP----IDLKPYAKEIIGNIITVHAELVR-IVPSVISKVISGIVETV 795 (887)
Q Consensus 721 ~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p----~~Vr~yv~e~L~~LV~Vhsev~~-~~p~L~~~IL~~l~~~~ 795 (887)
..++.-+..-..++..++. .=.. .|..+.... ...-+.+.+++..|-.++..+.. +...-+...+++|-..+
T Consensus 538 ~gL~~~i~~l~~~v~~iL~-~Qkk--~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l 614 (710)
T PF07393_consen 538 AGLNKGIDVLMNWVEFILS-EQKK--TDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERL 614 (710)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCC--CCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 4555555555555555554 2222 344332211 36778899999999988887773 44566778888888888
Q ss_pred HHHHHHhhccCCCCCccchhhHhhhHHHHHHHhhhhcchhHHHHHHHHH
Q psy10164 796 AEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQYCTDSAKAYFSEAL 844 (887)
Q Consensus 796 ~~~ll~~~~~v~~fs~~Gl~Qa~lDi~fl~~~L~~y~t~~a~~~~~~~~ 844 (887)
...|++.++. -+||..|.+|++=|+.+.+.++..+..+.....|..+.
T Consensus 615 ~~~l~~h~kk-~~vs~~Gg~~l~~Dl~~Y~~~~~~~~~~~v~~~F~~L~ 662 (710)
T PF07393_consen 615 HRLLLKHLKK-FTVSSTGGLQLIKDLNEYQDFIRSWGIPSVDEKFEALK 662 (710)
T ss_pred HHHHHHHHHh-CccCchhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 8888888875 57899999999999999999999998887776665444
No 52
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=50.12 E-value=25 Score=30.50 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=23.0
Q ss_pred eeEEEE-cCcccccccccc----cccCCC-CCCCCcCeEEEEecc
Q psy10164 98 ESAVWI-EEAPIQSLSWSR----RSMSPS-SYQIEDPLGLSVERE 136 (887)
Q Consensus 98 ~~~V~i-~~~~C~~~~~~~----~~tsps-~~~~~dPLgl~v~~~ 136 (887)
++.|++ |+.+|. +...+ .|..|. ......++.+.+++.
T Consensus 31 ~~~v~~~g~~~c~-~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~ 74 (89)
T cd00102 31 NLRVTFGGGVPCS-VLSVSSTAIVCTTPPYANPGPGPVEVTVDRG 74 (89)
T ss_pred cEEEEEeCCCeEE-EEEecCCEEEEECCCCCCCCcEEEEEEEeCC
Confidence 589999 899997 44322 453343 322236677777754
No 53
>PF14923 CCDC142: Coiled-coil protein 142
Probab=46.18 E-value=5.5e+02 Score=30.07 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCCCCCCC--C-CCCCChHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHhh-ccCCCCCccchhhHhhh
Q psy10164 746 HFEWDTVI--P-PIDLKPYAKEIIGNIITVHAELVR-IVPSVISKVISGIVETVAEELSRLM-SCVTKFSECGKQQAFID 820 (887)
Q Consensus 746 ~~dW~~~~--~-p~~Vr~yv~e~L~~LV~Vhsev~~-~~p~L~~~IL~~l~~~~~~~ll~~~-~~v~~fs~~Gl~Qa~lD 820 (887)
+.-|.... + |...+.||-.++..++.=.-|... ..|..-..+++.+++.+.+.-++.+ ...=+||..|.+|++-|
T Consensus 259 g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~D 338 (450)
T PF14923_consen 259 GRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQD 338 (450)
T ss_pred cchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHH
Confidence 46786544 3 679999999999998876666554 4444444566666666655555553 22348999999999999
Q ss_pred HHHHHHHhhh--h-cchhHHHH
Q psy10164 821 MSSLKNTLSQ--Y-CTDSAKAY 839 (887)
Q Consensus 821 i~fl~~~L~~--y-~t~~a~~~ 839 (887)
..+++..+.. + ++++.++.
T Consensus 339 F~~Vr~wl~~e~~~Ls~e~rq~ 360 (450)
T PF14923_consen 339 FGYVRDWLESECSGLSPELRQT 360 (450)
T ss_pred HHHHHHHHHhhhccCCHHHHHH
Confidence 9999998876 3 55555543
No 54
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=45.65 E-value=4e+02 Score=28.34 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=92.1
Q ss_pred ChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q psy10164 175 SFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQD 254 (887)
Q Consensus 175 sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~p 254 (887)
++.++......+.++.+...+++..-|-+.+..++.-+..+++-+.+.-..-.. + .......|+.+...=+..+..
T Consensus 66 sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~---e-l~~~~~el~k~Kk~Y~~~~~e 141 (237)
T cd07657 66 SWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDE---Q-YKKLTDEVEKLKSEYQKLLED 141 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH
Confidence 488888888889998888888888889999999999999998888653322100 0 011122222222222222222
Q ss_pred HHHHHHHHHHHHH----HHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchH-HHHHHHHHHHHHHHH
Q psy10164 255 VLARRERADKTRN----ALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVA-LFKKVLFEVESNIND 329 (887)
Q Consensus 255 ll~~r~k~~~l~~----~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~-~f~~v~~eve~ii~~ 329 (887)
.-..|+|.++.-. .-.-++|.|-=+ --....-+..+++|-..++..++.+.-|=..++| +|+..++=-|..|..
T Consensus 142 ~e~Ar~k~e~a~~~~~~~~~~~eKak~k~-~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~ 220 (237)
T cd07657 142 YKAAKSKFEEAVVKGGRGGRKLDKARDKY-QKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQ 220 (237)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222332222111 111122222111 1122233457889999999999998888778888 777777666667776
Q ss_pred HHHHHHH
Q psy10164 330 LRNMLRK 336 (887)
Q Consensus 330 ~r~~L~~ 336 (887)
.+.-|.+
T Consensus 221 ~k~~l~~ 227 (237)
T cd07657 221 WKKILQE 227 (237)
T ss_pred HHHHHHH
Confidence 6665543
No 55
>PRK14082 hypothetical protein; Provisional
Probab=43.79 E-value=42 Score=27.86 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-C-----HHHHHHHHHHHHcCCCCCCh-HHHHH
Q psy10164 319 VLFEVESNINDLRNMLRKKLKIMPQ-T-----LQEQKTLIRNLVNLDAGGDP-GWDAI 369 (887)
Q Consensus 319 v~~eve~ii~~~r~~L~~~L~~~~~-s-----~~~~~~~I~~Ll~L~~~~dP-iw~~l 369 (887)
.-.|++.+|+.|.-++++.|.+.+- . +|=.+++|+++-.+...+-| -|+||
T Consensus 7 ~~~e~e~ii~~FepkIkKsL~~T~yqeREDLeQElk~Ki~eK~~~~~~~e~PGF~efi 64 (65)
T PRK14082 7 DTEEIEHLIENFSPMIKKKLSNTSYQEREDLEQELKIKIIEKADMLLCQEVPGFWEFI 64 (65)
T ss_pred hHHHHHHHHHHccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCcHHHhh
Confidence 3468899999999999999988752 2 22247889998888888888 88886
No 56
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=42.85 E-value=58 Score=27.23 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=18.5
Q ss_pred hhcCHHHHHHHHHHHHHhhcC
Q psy10164 290 TKNDIDAVINDYARAMNLFGK 310 (887)
Q Consensus 290 ~~~dy~~~v~dY~kak~l~~~ 310 (887)
+.|+|+.|++.|..|-.+|..
T Consensus 17 ~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HTTSHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999887765
No 57
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=42.63 E-value=4.3e+02 Score=27.85 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=37.8
Q ss_pred hcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10164 291 KNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKL 338 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L 338 (887)
+.+|..+|+.|++.+..+...-..+|++.++==+..|.-+|..||.--
T Consensus 170 ~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 170 RRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999999998877766556788887777888888888887543
No 58
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.36 E-value=74 Score=27.57 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=37.4
Q ss_pred HHhhcCHHHHHHHHHHHHHhhcC-----cc---hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10164 288 NITKNDIDAVINDYARAMNLFGK-----TD---VALFKKVLFEVESNINDLRNMLRKK 337 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~~-----~~---~~~f~~v~~eve~ii~~~r~~L~~~ 337 (887)
+=+.|+|+.|+..|..|..+|.. .+ ...++.-..|.-..++.+|..|.+.
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~ 73 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQE 73 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34589999999999999887764 22 2367777777888888888777543
No 59
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=39.52 E-value=7.4e+02 Score=29.66 Aligned_cols=186 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHhhhhhhcchhhHHHHhhh---------hhhHHhhhHHHHHHHHHHHHhh---------hhcCCCcchHH
Q psy10164 176 FDDLRVGLSFLKRKVESQKEGQLSFLKSN---------VSSVMEQMDTLFIFKEKFEANV---------KEHGLDPTIKV 237 (887)
Q Consensus 176 l~~L~~~~~~l~~~i~~~~~~~~~lV~~N---------f~kFi~akdtid~~~~~~~~~~---------~~~~~~~~~~L 237 (887)
++.+.+.+..+. ++...-.++..+.+.. -...-...+.++.++..|.... .....+. ...
T Consensus 226 ~~~f~~Rl~~i~-~i~~~~~~f~~l~~~~~~g~~g~~~~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~~~w~~~~-~~f 303 (579)
T PF08385_consen 226 LDAFKERLEDIK-EIRETHEQFSRLLKSEFGGLRGKELSEGIDEIEEEFNEAYEPFKSLDYDILDVSNEEEWERDF-SEF 303 (579)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCcchhhHHHHH-HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHH
Q psy10164 238 EIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFK 317 (887)
Q Consensus 238 ~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~ 317 (887)
.+.++.+......++...+ +.+..+..++.++.+++.|+.-|. +++.+... +.
T Consensus 304 ~~~i~~lE~~l~~~l~~~f---~~~~s~~~~~~ll~~f~~L~~Rp~-I~~~l~~~-----------------------~~ 356 (579)
T PF08385_consen 304 RERIEDLERRLANILRQAF---DDCSSPEEAFRLLQKFKSLLNRPR-IRKALQEK-----------------------YE 356 (579)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCcCCHHHHHHHHHHHHhHhcchH-HHHHHHHH-----------------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccCC-------------------CCHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q psy10164 318 KVLFEVESNINDLRNMLRKKL-----KIMP-------------------QTLQEQKTLIRNLVNLDAGGDPGWDAIISQY 373 (887)
Q Consensus 318 ~v~~eve~ii~~~r~~L~~~L-----~~~~-------------------~s~~~~~~~I~~Ll~L~~~~dPiw~~l~~~~ 373 (887)
.++..+.+-++.++....+.. .+++ .-.+..+..+..++.=+..+.|-..-+...+
T Consensus 357 ~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 436 (579)
T PF08385_consen 357 QLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLLGPDWLDSPEGKELKQKY 436 (579)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhccchhhcchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy10164 374 EYITHLLESCKNEHMLL 390 (887)
Q Consensus 374 ~~l~~~l~~~~~~~~~~ 390 (887)
+.+...|...-.....+
T Consensus 437 ~~l~~~l~~~e~~~~~~ 453 (579)
T PF08385_consen 437 NELLKKLDEYEKEIFEE 453 (579)
T ss_pred HHHHHHHHHHHHHHHHH
No 60
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=38.95 E-value=33 Score=23.85 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.2
Q ss_pred HHhhcCHHHHHHHHHHHHHhh
Q psy10164 288 NITKNDIDAVINDYARAMNLF 308 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~ 308 (887)
+...|+|+.++..|.+|..+-
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 11 YFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHhCCchHHHHHHHHHHHHC
Confidence 467899999999999998764
No 61
>KOG0520|consensus
Probab=38.90 E-value=58 Score=41.08 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=46.7
Q ss_pred eeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecC
Q psy10164 6 VVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLG 77 (887)
Q Consensus 6 ~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~ 77 (887)
.|++|+|..|-. |+.|-|+|..-....+. ..+++|+. |.+ ++.+...-+.|..||. .+|-|.+.|..+
T Consensus 406 ~I~DfSP~Wsy~~ggvKVlV~G~~~~~~~~~-ysc~Fg~~-~VP-Aeliq~GVLrC~~P~h-~~G~V~l~V~c~ 475 (975)
T KOG0520|consen 406 TITDFSPEWSYLDGGVKVLVTGFPQDETRSN-YSCMFGEQ-RVP-AELIQEGVLRCYAPPH-EPGVVNLQVTCR 475 (975)
T ss_pred eeeccCcccccCCCCcEEEEecCccccCCCc-eEEEeCCc-ccc-HHHhhcceeeeecCcc-CCCeEEEEEEec
Confidence 489999999988 99999999622222222 27888865 444 3567788899998884 555555555433
No 62
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=38.69 E-value=5.2e+02 Score=27.61 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=48.1
Q ss_pred hcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCHHHHHHHHH
Q psy10164 291 KNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMP---QTLQEQKTLIR 353 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~---~s~~~~~~~I~ 353 (887)
+.+|..+|..|.+.+.-+......+|++.++-=++.|+=+|..||.--...+ ++.|+.-+=|+
T Consensus 173 ~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~s~~Cv~dD~~~e~~r 238 (242)
T cd07671 173 ERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCNHFSMQCVKDDELYEEVR 238 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHcCcHHHHHHHH
Confidence 5889999999999998888888888999888888999999999996543322 33344444444
No 63
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=38.54 E-value=32 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.1
Q ss_pred HHhhcCHHHHHHHHHHHHHhhc
Q psy10164 288 NITKNDIDAVINDYARAMNLFG 309 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~ 309 (887)
+.+.|+|+.|+..|.+|..+-.
T Consensus 9 ~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 9 YRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcc
Confidence 4678999999999999875543
No 64
>KOG0553|consensus
Probab=37.53 E-value=57 Score=35.63 Aligned_cols=75 Identities=13% Similarity=0.241 Sum_probs=48.5
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhcC------------cchHHHHHHHHHHHHHHH--HHHHHHHHhhccCCCC---HHHHH
Q psy10164 287 NNITKNDIDAVINDYARAMNLFGK------------TDVALFKKVLFEVESNIN--DLRNMLRKKLKIMPQT---LQEQK 349 (887)
Q Consensus 287 ~~i~~~dy~~~v~dY~kak~l~~~------------~~~~~f~~v~~eve~ii~--~~r~~L~~~L~~~~~s---~~~~~ 349 (887)
+.++.++|..||.-|.+|..|--. ....-+..-|++|+.-+. ..-.+.|.||.-.-.. .++..
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 458899999999999999988754 122234467788887553 4556677777533223 34445
Q ss_pred HHHHHHHcCCCC
Q psy10164 350 TLIRNLVNLDAG 361 (887)
Q Consensus 350 ~~I~~Ll~L~~~ 361 (887)
+.-.+=|+|+++
T Consensus 170 ~aykKaLeldP~ 181 (304)
T KOG0553|consen 170 EAYKKALELDPD 181 (304)
T ss_pred HHHHhhhccCCC
Confidence 555555666544
No 65
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=35.45 E-value=68 Score=28.01 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=17.3
Q ss_pred EcCcccccccccc----cccCCCC--CCCCcCe-EEEEecc
Q psy10164 103 IEEAPIQSLSWSR----RSMSPSS--YQIEDPL-GLSVERE 136 (887)
Q Consensus 103 i~~~~C~~~~~~~----~~tsps~--~~~~dPL-gl~v~~~ 136 (887)
.++.+|. +...+ .|..|.. .....|+ .+.++..
T Consensus 39 ~~~~~c~-~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~~~ 78 (90)
T smart00429 39 VGEAPCT-FLPSSSTAIVCKTPPYHTIPGSVPVREVGLRNG 78 (90)
T ss_pred eCCEEeE-EeCCcceEEEEECCCCCCCCCCcCeEEEEEeCC
Confidence 3457897 54322 4544443 2345667 6666543
No 66
>KOG3743|consensus
Probab=34.53 E-value=76 Score=37.09 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=42.1
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK 65 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~ 65 (887)
|-|.|..+.=.-|---+++.+.|.|| ..++ +|..|+++..-. |.++..+.|.+++-.
T Consensus 492 pvp~v~~l~l~G~gd~amlel~g~nf---~p~l-~vwfg~~e~et~--~r~~~sl~c~Vp~vs 548 (622)
T KOG3743|consen 492 PVPVVVSLELDGGGDVAMLELHGQNF---VPNL-QVWFGDVEAETY--YRSGESLQCVVPDVS 548 (622)
T ss_pred ccceeEEEEEecCcceeEEEecCCCC---CCCc-eeeccccCchhh--hcccceEEEEeCChh
Confidence 34666665544443378899999999 3446 899999988755 778889999998755
No 67
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.08 E-value=91 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=29.6
Q ss_pred hcCHHHHHHHHHHHHHhhcC-----cchH---HHHHHHHHHHHHHHHHHHHHHHh
Q psy10164 291 KNDIDAVINDYARAMNLFGK-----TDVA---LFKKVLFEVESNINDLRNMLRKK 337 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~-----~~~~---~f~~v~~eve~ii~~~r~~L~~~ 337 (887)
.|+|+.|+..|..|-..+.. .+.. .++.=-.+.-..++.++..+..+
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~r 75 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLER 75 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999887664 2322 33333344444555555555444
No 68
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=33.45 E-value=2.9e+02 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=12.2
Q ss_pred hcCHHHHHHHHHHHHHhhcC
Q psy10164 291 KNDIDAVINDYARAMNLFGK 310 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~ 310 (887)
+..|..+|.+|+.+..-|-.
T Consensus 138 R~~YN~av~~yN~~i~~FP~ 157 (186)
T PF04011_consen 138 RRAYNDAVRDYNTAIRQFPT 157 (186)
T ss_dssp HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHhccH
Confidence 66788888888888765543
No 69
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=32.27 E-value=1.1e+02 Score=26.41 Aligned_cols=48 Identities=15% Similarity=0.371 Sum_probs=35.7
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhcC-----cch---HHHHHHHHHHHHHHHHHHHHH
Q psy10164 287 NNITKNDIDAVINDYARAMNLFGK-----TDV---ALFKKVLFEVESNINDLRNML 334 (887)
Q Consensus 287 ~~i~~~dy~~~v~dY~kak~l~~~-----~~~---~~f~~v~~eve~ii~~~r~~L 334 (887)
++=+.|+|..++..|++|-.+|-+ .|. ..|+.--.|.-+.++.++..+
T Consensus 15 e~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 15 KAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344589999999999999887765 232 367777777777777777764
No 70
>KOG1961|consensus
Probab=30.76 E-value=1e+03 Score=28.75 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=57.4
Q ss_pred hhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcH
Q psy10164 204 NVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPL 283 (887)
Q Consensus 204 Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~ 283 (887)
|...--+.-+.+|.+..+|..+-.....+ .+.+..-|..++.+++.+-.-|-.|+....+|... =.=+-+|.
T Consensus 76 ~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~-L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~f-------Vdd~iVpp 147 (683)
T KOG1961|consen 76 NLASLHNQIRACDSVLERMETMLSSFQSD-LSSISSDIKILQEKSNDMQLRLENRQAVESKLSQF-------VDDLIVPP 147 (683)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH-------hccccCCH
Confidence 44444444455555555555542222112 36777778888888888887777777766666332 22245899
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHH
Q psy10164 284 SISNNITKNDIDAVINDYARAMN 306 (887)
Q Consensus 284 ~L~~~i~~~dy~~~v~dY~kak~ 306 (887)
.|.+-|-.|+-+.- +|..++.
T Consensus 148 ~lI~~I~~g~vne~--~f~~~Le 168 (683)
T KOG1961|consen 148 ELIKTIVDGDVNEP--EFLEALE 168 (683)
T ss_pred HHHHHHHcCCCCch--HHHHHHH
Confidence 99999999876542 4444443
No 71
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.78 E-value=7.2e+02 Score=26.59 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10164 292 NDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKK 337 (887)
Q Consensus 292 ~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~ 337 (887)
.+|...|..|++++.-+...-..+|++.++-=+..++.+|..||.-
T Consensus 164 ~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y 209 (261)
T cd07648 164 DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASY 209 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888887777777654444477777777777777777777653
No 72
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=28.66 E-value=65 Score=22.02 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=17.5
Q ss_pred HHhhcCHHHHHHHHHHHHHhhc
Q psy10164 288 NITKNDIDAVINDYARAMNLFG 309 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~ 309 (887)
..+.|+|+.+++.|.+|..+..
T Consensus 11 ~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHHHCc
Confidence 3678999999999999987653
No 73
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.31 E-value=7.9e+02 Score=26.61 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=36.6
Q ss_pred hhcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10164 290 TKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLK 339 (887)
Q Consensus 290 ~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~ 339 (887)
...+|...|+.|++.+.-+...-..+|++.++==++.+.-+|.-||.--.
T Consensus 169 a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~ 218 (269)
T cd07673 169 ATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSN 218 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888888888888776655567777766667778888888775543
No 74
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=27.96 E-value=6.6e+02 Score=25.59 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC-cc-
Q psy10164 235 IKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK-TD- 312 (887)
Q Consensus 235 ~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~-~~- 312 (887)
..|.+.|++--..|+.+......-..+++..+....-+...+.+..-..+ .++.+.+=. + +.|..+ .+
T Consensus 13 k~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~--~~l~~En~q--i------~~Lq~EN~eL 82 (181)
T PF05769_consen 13 KRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPR--AGLQQENRQ--I------RQLQQENREL 82 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHhhHH--H------HHHHHHHHHH
Confidence 56666666666677777776666677777777666666666666664433 122111100 0 111110 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10164 313 VALFKKVLFEVESNINDLRNMLRKKLK 339 (887)
Q Consensus 313 ~~~f~~v~~eve~ii~~~r~~L~~~L~ 339 (887)
..++..-...+|.||..||.....-+.
T Consensus 83 ~~~leEhq~alelIM~KyReq~~~l~~ 109 (181)
T PF05769_consen 83 RQSLEEHQSALELIMSKYREQMSQLMM 109 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113444556678999999988765554
No 75
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=27.67 E-value=1.4e+02 Score=25.89 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=29.4
Q ss_pred HhhcCHHHHHHHHHHHHHhhcC------cch---HHHHHHHHHHHHHHHHHHHHH
Q psy10164 289 ITKNDIDAVINDYARAMNLFGK------TDV---ALFKKVLFEVESNINDLRNML 334 (887)
Q Consensus 289 i~~~dy~~~v~dY~kak~l~~~------~~~---~~f~~v~~eve~ii~~~r~~L 334 (887)
=+.|+|+.|+..|..|-.+|-. .+. ..++.-..|.-..++.+|..|
T Consensus 17 D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999877653 111 133444455555555555554
No 76
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=27.36 E-value=1.9e+02 Score=26.53 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=37.4
Q ss_pred CCEEEEEeccCCCCCCCe-eeEEEcC--------ccCeeccccccCCEEEEEeCCCC--ceeeEEEEEecCC
Q psy10164 18 GTRVTIRGENLGKQPNDL-IGLVICG--------CDCLLSAEWKSPNKIIARSGPGK--GRGEIIVSTSLGG 78 (887)
Q Consensus 18 GT~ltI~G~nlg~~~~di-~~V~vg~--------~~C~~~~~~~~~~~IvC~t~~~~--~~g~v~V~v~~~~ 78 (887)
|-.+.|+|++|-....|- ..|++-. ++|... -...++++.+..|..- |...+.|+..+++
T Consensus 19 G~~~~I~G~~LKi~g~d~~~Gv~l~~~~~g~~~~v~~~~i-~~N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 19 GGPVRITGSNLKIDGDDPSQGVFLVSDDEGTETKVPCSSI-VRNKPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCeEEEEeeEEEEecCCCceEEEEEcCCCCceEEecHHHe-EeCCCcEEEEECcCccCceEEEEEEEEEecC
Confidence 778889999887754442 1555533 445222 1445677888887644 5666777777664
No 77
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=26.66 E-value=73 Score=21.89 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHhhcCHHHHHHHHHHHHHhh
Q psy10164 288 NITKNDIDAVINDYARAMNLF 308 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~ 308 (887)
..+.|+|+.++..|.+|..+-
T Consensus 11 y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 11 YEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC
Confidence 356899999999999998764
No 78
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=26.58 E-value=5.2e+02 Score=27.43 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcC----cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH----HcCCCCCChH
Q psy10164 294 IDAVINDYARAMNLFGK----TDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIRNL----VNLDAGGDPG 365 (887)
Q Consensus 294 y~~~v~dY~kak~l~~~----~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~~L----l~L~~~~dPi 365 (887)
-.-+.+.+...++.+.. .+.+.+...+.+.-.++.++|.-++......-.+.+.....|..- -+++..-+|-
T Consensus 14 l~fLa~~l~~~~p~l~~lLp~~~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~vKWdvkev~~qhs~Y 93 (234)
T PF10474_consen 14 LSFLARQLESLRPYLESLLPPNKRDFLEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANVKWDVKEVMSQHSSY 93 (234)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcCCCCCCCCCccCHH
Confidence 34556666666666553 566778899999999999999999977765556666666666653 2333344664
Q ss_pred HHHHHHHHHHHHH
Q psy10164 366 WDAIISQYEYITH 378 (887)
Q Consensus 366 w~~l~~~~~~l~~ 378 (887)
.+.|......+..
T Consensus 94 Vd~l~~~~~~f~~ 106 (234)
T PF10474_consen 94 VDQLVQEFQQFSE 106 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.72 E-value=1.9e+03 Score=30.13 Aligned_cols=203 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHhhhhhhcchhhHHH--HhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q psy10164 176 FDDLRVGLSFLKRKVESQKEGQLSF--LKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQ 253 (887)
Q Consensus 176 l~~L~~~~~~l~~~i~~~~~~~~~l--V~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~ 253 (887)
+..|..-...+...-.....+.+++ .+..|+.||...-.+. +...-......+.....++...-+....
T Consensus 788 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---------f~~~pe~~~~~~~~~~~~~~~~l~~~~~ 858 (1486)
T PRK04863 788 IEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVA---------FEADPEAELRQLNRRRVELERALADHES 858 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchh---------cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc------CcHHHHH--------------------------------HHhhcCHH
Q psy10164 254 DVLARRERADKTRNALTVLQRYRFLFS------LPLSISN--------------------------------NITKNDID 295 (887)
Q Consensus 254 pll~~r~k~~~l~~~~~~l~r~~flF~------LP~~L~~--------------------------------~i~~~dy~ 295 (887)
.....|.+.+.++..+..|.++-..++ |+.++.+ +-...+|+
T Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e 938 (1486)
T PRK04863 859 QEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFE 938 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHHHHHHHHHHhhcC---------------------------------------------cchHHHHHHHHHHHHHHHHH
Q psy10164 296 AVINDYARAMNLFGK---------------------------------------------TDVALFKKVLFEVESNINDL 330 (887)
Q Consensus 296 ~~v~dY~kak~l~~~---------------------------------------------~~~~~f~~v~~eve~ii~~~ 330 (887)
.+-.+|.-|+.-... ......++-|.+.++..+++
T Consensus 939 ~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~ 1018 (1486)
T PRK04863 939 QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQY 1018 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHcCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 331 RNMLRKKLKIMPQTLQEQKTLIRNLVNLDAGGDP-GWDAIISQYEYITHLLESCKNEH 387 (887)
Q Consensus 331 r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~~~~dP-iw~~l~~~~~~l~~~l~~~~~~~ 387 (887)
...+..--.....-.+++.+.-..|-+||++.++ .-.-...+-+-|...|..+..+.
T Consensus 1019 ~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 1076 (1486)
T PRK04863 1019 NQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRR 1076 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHH
No 80
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=25.26 E-value=2e+02 Score=27.41 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=35.5
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHH
Q psy10164 747 FEWDTVIPPIDLKPYAKEIIGNIITVHAELV-RIVPSVISKVISGIVETV 795 (887)
Q Consensus 747 ~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~-~~~p~L~~~IL~~l~~~~ 795 (887)
+.|-+-+.|+..++||-.+|.-|-....+.. .+.+.....++..++..+
T Consensus 22 YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v 71 (125)
T PF12022_consen 22 YRMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEV 71 (125)
T ss_pred hhccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 4577778999999999999999999888884 344444455444444444
No 81
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=24.43 E-value=8.5e+02 Score=25.69 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=28.9
Q ss_pred hhcCHHHHHHHHHHHHHhhcCcchH-HHHHHHHHHHHHHHHHHHHHH
Q psy10164 290 TKNDIDAVINDYARAMNLFGKTDVA-LFKKVLFEVESNINDLRNMLR 335 (887)
Q Consensus 290 ~~~dy~~~v~dY~kak~l~~~~~~~-~f~~v~~eve~ii~~~r~~L~ 335 (887)
.+++|...|+.++..+..+=..++| +|+....=-+..++.++.-|+
T Consensus 180 a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~ 226 (251)
T cd07653 180 AKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLL 226 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3677888888877776555445555 555555555666666666654
No 82
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=6.6e+02 Score=24.28 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=58.1
Q ss_pred HhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q psy10164 274 RYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIR 353 (887)
Q Consensus 274 r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~ 353 (887)
.++---.=|..|..-+ ||-+++.-.+|+...++.+.+-+-.-..-+..|+.+++..|
T Consensus 12 qn~V~taSP~~Li~ML----yeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~L------------------- 68 (132)
T COG1516 12 QNQVNTASPHKLILML----YEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASL------------------- 68 (132)
T ss_pred HHHHhcCCHHHHHHHH----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 3344445688887777 88999999999999999888866666666777777666553
Q ss_pred HHHcCCC-CCChHHHHHHHHHHHHHHHHHH
Q psy10164 354 NLVNLDA-GGDPGWDAIISQYEYITHLLES 382 (887)
Q Consensus 354 ~Ll~L~~-~~dPiw~~l~~~~~~l~~~l~~ 382 (887)
+. .+.-+...|..-|+|+...|..
T Consensus 69 -----d~E~Ggeia~nL~~LY~y~~~rL~~ 93 (132)
T COG1516 69 -----DYEKGGEIAQNLDALYDYMVRRLVQ 93 (132)
T ss_pred -----CHhhcchHHHHHHHHHHHHHHHHHH
Confidence 22 2355667777888888777654
No 83
>KOG0810|consensus
Probab=23.84 E-value=1e+03 Score=26.34 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=43.7
Q ss_pred CChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHh
Q psy10164 174 TSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEAN 225 (887)
Q Consensus 174 ~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~ 225 (887)
..+++.-.....+...|+.+++....+-+.| .+.+........++.+|+..
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h-s~~l~~~~~~~~~k~~l~~~ 83 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLH-SKSLHSPNADKELKRKLESL 83 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHhccccccHHHHHHHHHH
Confidence 6688888888899999999999999998888 88888888888888877665
No 84
>KOG0994|consensus
Probab=23.57 E-value=1.6e+03 Score=29.48 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchH--HHHHH
Q psy10164 242 KKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVA--LFKKV 319 (887)
Q Consensus 242 ~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~--~f~~v 319 (887)
..+-..|...=..|....++++++.+++.-.+. .+-+.|.+|++.|.+.+.. -..+-
T Consensus 1411 ~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~---------------------~aseA~~~Aq~~~~~a~as~~q~~~s 1469 (1758)
T KOG0994|consen 1411 GGALLMAGDADTQLRSKLAEAEQTLSMVREAKL---------------------SASEAQQSAQRALEQANASRSQMEES 1469 (1758)
T ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 320 LFEVESNINDLRNMLRKKLKIMPQTLQEQKTLIRNLVNLDAGGDPGWDAIISQYEYITHLLESCKNE 386 (887)
Q Consensus 320 ~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~~~~~~ 386 (887)
-.|.+++|+++++=| .+...++++.+++-..-|+|..+-+|- |+..|..+|.....+
T Consensus 1470 ~~el~~Li~~v~~Fl----t~~~adp~si~~vA~~vL~l~lp~tpe------qi~~L~~~I~e~v~s 1526 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFL----TQPDADPDSIEEVAEEVLALELPLTPE------QIQQLTGEIQERVAS 1526 (1758)
T ss_pred HHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHh
No 85
>KOG0376|consensus
Probab=23.56 E-value=89 Score=36.34 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=47.5
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHHHHHHHHHHH
Q psy10164 282 PLSISNNITKNDIDAVINDYARAMNLFGK-----TDVALFKKVLFEVESNINDLRNML 334 (887)
Q Consensus 282 P~~L~~~i~~~dy~~~v~dY~kak~l~~~-----~~~~~f~~v~~eve~ii~~~r~~L 334 (887)
|..++-++.+|.|-.+...|++|+..|+. .+.+-++|..+||+.++.+++-+.
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ 126 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEK 126 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999998886 577889999999999999877653
No 86
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=23.51 E-value=6.4e+02 Score=23.94 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhhcCcchH-HHH-------HH--HHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy10164 283 LSISNNITKNDIDAVINDYARAMNLFGKTDVA-LFK-------KV--LFEVESNINDLRNMLRKKLKIMPQTLQEQKTLI 352 (887)
Q Consensus 283 ~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~-~f~-------~v--~~eve~ii~~~r~~L~~~L~~~~~s~~~~~~~I 352 (887)
..|+++|.+||.+.|+.--+.-+.-+.+.+.. .|. .+ -.++++.++=.|..+ ....+ .-.++..++.
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~~~--~~~~~l~~~~ 82 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL-SPFND--EFLEELKKLM 82 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhHH--HHHHHHHHHH
Confidence 46888999999999998887776655543211 111 11 135556666566655 32222 2456778888
Q ss_pred HHHHcCCCCC---ChHHHHHHH
Q psy10164 353 RNLVNLDAGG---DPGWDAIIS 371 (887)
Q Consensus 353 ~~Ll~L~~~~---dPiw~~l~~ 371 (887)
.+|.=-++.. +|...++..
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~~ 104 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLSP 104 (145)
T ss_pred HHHHcCCcccccchHHHHHhCh
Confidence 8888777776 687777764
No 87
>PF12209 SAC3: Leucine permease transcriptional regulator helical domain; InterPro: IPR024293 This domain is found in fungal proteins, including the nuclear mRNA export protein SAC3. It has been suggested this domain provides a scaffold within the yeast Sac3:Cdc31:Sus1:Thp1 (TREX-2) complex to integrate interactions between protein complexes to facilitate the coupling of transcription and mRNA export during gene expression [].; PDB: 3FWC_N 3FWB_B.
Probab=23.43 E-value=2.1e+02 Score=25.04 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=24.9
Q ss_pred HHHHHhhcchhhHHH-----HHHHHHHHHHHHHHHhhc
Q psy10164 772 VHAELVRIVPSVISK-----VISGIVETVAEELSRLMS 804 (887)
Q Consensus 772 Vhsev~~~~p~L~~~-----IL~~l~~~~~~~ll~~~~ 804 (887)
||+|+..+.|.++.+ --..+++.++++|.++|=
T Consensus 14 V~~el~~~l~~~l~~~n~~~~R~~iI~sLs~ELy~AFi 51 (79)
T PF12209_consen 14 VHSELSKILKNLLRRQNARKERKQIIDSLSEELYDAFI 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 899999988887754 344778889999999873
No 88
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.90 E-value=9.2e+02 Score=25.54 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=39.1
Q ss_pred hcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10164 291 KNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKL 338 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L 338 (887)
..+|...+..|.+++.-+......+|....+-=+..+.-||..||.--
T Consensus 167 ~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~ 214 (233)
T cd07649 167 GDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYT 214 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888777777777888888888889999999987644
No 89
>KOG4648|consensus
Probab=22.65 E-value=1e+03 Score=26.94 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=44.9
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhcCc------------chHHHHHHHHHHHHHHHHHHH-------HHHHhhccCCCCHHH
Q psy10164 287 NNITKNDIDAVINDYARAMNLFGKT------------DVALFKKVLFEVESNINDLRN-------MLRKKLKIMPQTLQE 347 (887)
Q Consensus 287 ~~i~~~dy~~~v~dY~kak~l~~~~------------~~~~f~~v~~eve~ii~~~r~-------~L~~~L~~~~~s~~~ 347 (887)
+..++|.|+.+|++|.++..+.-.. ....|--.-.+|+..+.-=+. +.-.|.. -.-.+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~--Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES--LGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH--HhhHHH
Confidence 4578999999999999998876631 223455555667665542222 1111110 023355
Q ss_pred HHHHHHHHHcCCCCCC
Q psy10164 348 QKTLIRNLVNLDAGGD 363 (887)
Q Consensus 348 ~~~~I~~Ll~L~~~~d 363 (887)
.++--+.-|+|++..+
T Consensus 184 AKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNI 199 (536)
T ss_pred HHHhHHHHHhhCcccH
Confidence 6666677788887744
No 90
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=22.57 E-value=1.2e+03 Score=26.93 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=60.4
Q ss_pred hhhhcchhhHHH--HhhhhhhHHhhhHHHHHHHHHHHHhhh---h-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 189 KVESQKEGQLSF--LKSNVSSVMEQMDTLFIFKEKFEANVK---E-HGLDPTIKVEIAIKKSMTEATKLFQDVLARRERA 262 (887)
Q Consensus 189 ~i~~~~~~~~~l--V~~Nf~kFi~akdtid~~~~~~~~~~~---~-~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~ 262 (887)
+++++..++-.+ +|.+|.+.| +.+|..+..+...-.. . .|+..-.-++..=.+++..++.+..-+=+-.+=+
T Consensus 156 el~~lrrdLavlRQ~~~~~~~~~--~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSFFTEI--KESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 677776665 4555555554433211 1 1222112333333344455555554443333333
Q ss_pred HHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcC------cchHHHHHHHH-HHHHHHHH
Q psy10164 263 DKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGK------TDVALFKKVLF-EVESNIND 329 (887)
Q Consensus 263 ~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~------~~~~~f~~v~~-eve~ii~~ 329 (887)
+.||.= |. .|..==+|..| +.+-+|-..|+.-+.+ .+.|+|+|||+ |.+.+.++
T Consensus 234 E~LRkD--V~--~RgVRp~~~qL---------e~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE 294 (426)
T smart00806 234 EALRKD--VA--QRGVRPSKKQL---------ETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE 294 (426)
T ss_pred HHHHHH--HH--HcCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Confidence 333321 11 23344455544 3444555555544443 67899999996 55555543
No 91
>KOG2022|consensus
Probab=22.42 E-value=1.4e+03 Score=29.11 Aligned_cols=107 Identities=14% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCCCCCCCCChHHHHH---HH-----HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhHhhhH
Q psy10164 750 DTVIPPIDLKPYAKEI---IG-----NIITVHAELVRIVPSVISKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDM 821 (887)
Q Consensus 750 ~~~~~p~~Vr~yv~e~---L~-----~LV~Vhsev~~~~p~L~~~IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Qa~lDi 821 (887)
.+.|+|..||+...=. ++ ++++|-..|..++|+|+..|+.++.-...+. ++
T Consensus 847 l~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS---------------------~l 905 (982)
T KOG2022|consen 847 LNSPEPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILIYAIMRGVGGEASRS---------------------TL 905 (982)
T ss_pred cCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHHHHHHHhcCcCccc---------------------hh
Confidence 4567777777654322 21 2667777777889988888877664433333 33
Q ss_pred HHHHHHhhhh---cchhHHHHHHHHHhhCCC----CChhHHHHHH-HHHHHH--HHHhHHHHhccc
Q psy10164 822 SSLKNTLSQY---CTDSAKAYFSEALDVIPP----LNATQQQRVE-QILSQY--QVRMKLQLLSLF 877 (887)
Q Consensus 822 ~fl~~~L~~y---~t~~a~~~~~~~~~~i~~----~~~~~~~~l~-~~l~~~--~~~t~~qf~cf~ 877 (887)
..+.+.|..+ ...+++.-+.+.++...- .+|+.+.++- .+|++- +++-+.+..||.
T Consensus 906 d~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer~n~R~~k~~il~~~ 971 (982)
T KOG2022|consen 906 DALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRERGNKRNFKQQILEFN 971 (982)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 3344444444 445778888888865543 4667766654 555554 456666667764
No 92
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.37 E-value=1.5e+02 Score=29.64 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=39.9
Q ss_pred hhHHHhHHHHhhhhhhcchhhHHH-HhhhhhhHHhhhHHHHHHHHHHHHh
Q psy10164 177 DDLRVGLSFLKRKVESQKEGQLSF-LKSNVSSVMEQMDTLFIFKEKFEAN 225 (887)
Q Consensus 177 ~~L~~~~~~l~~~i~~~~~~~~~l-V~~Nf~kFi~akdtid~~~~~~~~~ 225 (887)
.........++.+++++++++..+ -.|+|-|+.+..-.+|++.++++..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888999888888887 8999999999988899988887665
No 93
>KOG4451|consensus
Probab=22.35 E-value=4e+02 Score=27.89 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=55.9
Q ss_pred hcchhhHHHHhhhhhhHHhhhHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 192 SQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTV 271 (887)
Q Consensus 192 ~~~~~~~~lV~~Nf~kFi~akdtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~ 271 (887)
...-+|-.++.+|... .+-||.++.++..+.+. .+..++..+.+.+.+..++..-+++|..+|.+|...-=
T Consensus 54 ey~~em~~lL~ekm~H----veelr~iHadiN~men~-----ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR~~~lg 124 (286)
T KOG4451|consen 54 EYELEMGVLLLEKMGH----VEELREIHADINEMEND-----IKQVKALEQHITSCNGRKGEEYMELKSHADELRQINLG 124 (286)
T ss_pred HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhcC
Confidence 3444566777888777 56778888776555321 35666677778888889999999999999999976555
Q ss_pred HHHhhhhh
Q psy10164 272 LQRYRFLF 279 (887)
Q Consensus 272 l~r~~flF 279 (887)
|.+++.|-
T Consensus 125 l~~L~Dl~ 132 (286)
T KOG4451|consen 125 LNTLEDLT 132 (286)
T ss_pred ccchhhHh
Confidence 55555443
No 94
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.61 E-value=1e+03 Score=25.65 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=39.9
Q ss_pred hcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10164 291 KNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKL 338 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L 338 (887)
+.+|...+.++++...-+......+|.+.++-=++.|.-+|..||.-=
T Consensus 188 k~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~ 235 (258)
T cd07680 188 QEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIK 235 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887777777777999999998999999999998644
No 95
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.53 E-value=1e+03 Score=25.54 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=30.2
Q ss_pred HhhcCHHHHHHHHHHHHHhhcCcchH-HHHHHHHHHHHHHHHHHHHH
Q psy10164 289 ITKNDIDAVINDYARAMNLFGKTDVA-LFKKVLFEVESNINDLRNML 334 (887)
Q Consensus 289 i~~~dy~~~v~dY~kak~l~~~~~~~-~f~~v~~eve~ii~~~r~~L 334 (887)
..+++|...++.+++.+.-+=..++| +|+++++==|..+..++.-|
T Consensus 181 ~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l 227 (253)
T cd07676 181 DSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESM 227 (253)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888433334455 77777666666666665543
No 96
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.37 E-value=7.2e+02 Score=23.69 Aligned_cols=92 Identities=9% Similarity=0.019 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchH
Q psy10164 235 IKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVA 314 (887)
Q Consensus 235 ~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~ 314 (887)
+.+.+.+.+.....+..+..+...-.-.+.-...-.+-+.++.+...-..+...++.|+++.+...|. ..-.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~ 150 (181)
T PF12729_consen 78 QEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILN-------GEARP 150 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-------HhHHH
Confidence 44555555555555555444433311111111223333334444555577778888888886554433 22335
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10164 315 LFKKVLFEVESNINDLRNM 333 (887)
Q Consensus 315 ~f~~v~~eve~ii~~~r~~ 333 (887)
.+..+-..++++++.-.+.
T Consensus 151 ~~~~~~~~l~~l~~~~~~~ 169 (181)
T PF12729_consen 151 AFDELRDALDELIEYNNQQ 169 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665544443
No 97
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.28 E-value=1.8e+02 Score=22.13 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=12.3
Q ss_pred hHhhhHHHHHHHhhhh
Q psy10164 816 QAFIDMSSLKNTLSQY 831 (887)
Q Consensus 816 Qa~lDi~fl~~~L~~y 831 (887)
|--||++||.+.....
T Consensus 2 QTEvdCe~LKrcce~L 17 (44)
T smart00340 2 QTEVDCELLKRCCESL 17 (44)
T ss_pred chHHHHHHHHHHHHHH
Confidence 6678999998876653
No 98
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.28 E-value=6.1e+02 Score=24.28 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 234 TIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQ 273 (887)
Q Consensus 234 ~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~ 273 (887)
.+.|...|++....+..+=..+.+-|+..+.++.=.+-++
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4777777777777777777777777777777766555443
No 99
>PF06385 Baculo_LEF-11: Baculovirus LEF-11 protein; InterPro: IPR009429 This family consists of several Baculovirus LEF-11 proteins. The exact function of this family is unknown although it has been shown that LEF-11 is required for viral DNA replication during the infection cycle [] and plays a role in late/very late gene activation.; GO: 0006355 regulation of transcription, DNA-dependent, 0019058 viral infectious cycle
Probab=20.58 E-value=47 Score=29.97 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHH
Q psy10164 266 RNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYAR 303 (887)
Q Consensus 266 ~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~k 303 (887)
+.+-.-++|..-+|+||.+| ..+|..++..|..
T Consensus 60 k~v~~H~~Ri~~if~L~~sL-----~~EY~~~v~ky~~ 92 (94)
T PF06385_consen 60 KRVAPHHKRINRIFNLPTSL-----EDEYNYCVSKYNG 92 (94)
T ss_pred ccHHHHHHHHHHHHcCcchH-----HHHHHHHHHhccC
Confidence 55566678889999999877 4578888888764
No 100
>KOG4514|consensus
Probab=20.52 E-value=8.1e+02 Score=24.85 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 252 FQDVLARRERADKTRNALTVLQR 274 (887)
Q Consensus 252 ~~pll~~r~k~~~l~~~~~~l~r 274 (887)
.+|+-.-..++..+|..+++|+.
T Consensus 198 m~pv~~La~qir~irRlve~les 220 (222)
T KOG4514|consen 198 MKPVEQLAQQIRQIRRLVEMLES 220 (222)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777777777777764
No 101
>KOG1924|consensus
Probab=20.51 E-value=6.2e+02 Score=31.50 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=41.5
Q ss_pred cCCChhhHHHhHHHHhhhhhhcchhhHHH-Hhh-hhhhHHh-----------hhHHHHHHHHHHHHhhh
Q psy10164 172 HATSFDDLRVGLSFLKRKVESQKEGQLSF-LKS-NVSSVME-----------QMDTLFIFKEKFEANVK 227 (887)
Q Consensus 172 ~~~sl~~L~~~~~~l~~~i~~~~~~~~~l-V~~-Nf~kFi~-----------akdtid~~~~~~~~~~~ 227 (887)
.--|.+.++...+.+..+|..+..+++.. +.. --++|+. .-+++..|+.+|+..-+
T Consensus 892 Srvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye 960 (1102)
T KOG1924|consen 892 SRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYE 960 (1102)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999888876 333 2344443 33788889998887643
Done!