Query psy10164
Match_columns 887
No_of_seqs 310 out of 824
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:30:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uad_C RSEC5, exocyst complex 99.8 6.8E-20 2.3E-24 165.3 7.6 91 2-92 5-96 (99)
2 2uzx_B Hepatocyte growth facto 99.5 3.9E-14 1.3E-18 171.1 8.1 135 4-140 541-712 (727)
3 3tc9_A Hypothetical hydrolase; 99.0 2.5E-10 8.5E-15 130.7 7.8 83 3-88 16-103 (430)
4 2cxk_A Camta1, calmodulin bind 99.0 1.2E-09 4.1E-14 97.1 8.5 86 2-94 4-95 (95)
5 4hw6_A Hypothetical protein, I 99.0 5.3E-10 1.8E-14 128.0 7.9 83 3-88 18-105 (433)
6 3kya_A Putative phosphatase; s 98.9 1.9E-09 6.5E-14 124.3 7.2 83 3-88 16-101 (496)
7 3hrp_A Uncharacterized protein 98.6 5E-08 1.7E-12 110.7 8.0 79 4-86 17-100 (409)
8 3muj_A Transcription factor CO 98.3 1.1E-06 3.9E-11 81.0 8.7 72 1-78 2-75 (138)
9 2uzx_B Hepatocyte growth facto 98.3 6.6E-08 2.3E-12 116.8 0.3 71 4-78 635-707 (727)
10 3mlp_A Transcription factor CO 97.9 2.5E-05 8.5E-10 82.2 8.6 70 3-78 230-301 (402)
11 3orj_A Sugar-binding protein; 96.8 0.0016 5.6E-08 71.1 7.3 73 2-78 111-187 (439)
12 2d2s_A Exocyst complex compone 96.4 0.14 4.9E-06 52.9 18.4 198 274-527 14-218 (235)
13 2a2f_X Exocyst complex compone 96.2 0.0085 2.9E-07 65.0 8.2 84 746-830 205-291 (325)
14 2cxk_A Camta1, calmodulin bind 95.0 0.0091 3.1E-07 52.7 2.1 70 82-158 5-94 (95)
15 3orj_A Sugar-binding protein; 94.9 0.094 3.2E-06 57.5 10.1 89 2-97 10-127 (439)
16 2fji_1 Exocyst complex compone 92.9 12 0.00042 41.4 23.1 152 673-835 138-297 (399)
17 3n1e_A Vacuolar protein sortin 92.8 1.6 5.3E-05 41.1 13.0 82 748-831 42-126 (141)
18 3fhn_A Protein transport prote 90.4 1 3.5E-05 53.4 10.9 122 708-831 504-636 (706)
19 2yrp_A Nuclear factor of activ 88.6 2.7 9.2E-05 37.9 9.8 83 4-89 8-107 (114)
20 3iag_C Recombining binding pro 88.0 2 6.8E-05 46.8 10.1 56 2-64 326-382 (422)
21 1uad_C RSEC5, exocyst complex 76.5 1.6 5.6E-05 38.5 3.3 34 100-135 40-80 (99)
22 1ikn_C P50D, protein (NF-kappa 71.5 15 0.0005 33.4 8.2 87 2-90 1-105 (119)
23 1u36_A DNA-binding, nuclear fa 69.7 12 0.00041 33.3 7.1 85 2-89 1-104 (106)
24 3brd_A LIN-12 and GLP-1 phenot 68.4 5.1 0.00017 44.5 5.4 56 3-65 375-431 (477)
25 3swh_A MUNC13-1, protein UNC-1 65.4 26 0.00087 37.9 10.2 121 674-803 118-256 (341)
26 3hr0_A COG4; conserved oligome 58.5 29 0.00099 36.1 8.8 70 760-830 125-195 (263)
27 2rpa_A Katanin P60 ATPase-cont 55.4 17 0.00058 30.4 5.1 25 286-310 20-44 (78)
28 1qho_A Alpha-amylase; glycosid 52.8 28 0.00094 41.5 8.6 67 3-75 497-563 (686)
29 3mmi_A Myosin-4; globular tail 45.3 72 0.0025 34.9 9.5 119 708-830 134-259 (386)
30 1zk9_A Transcription factor RE 42.8 28 0.00095 31.1 4.7 80 3-89 11-108 (110)
31 1my7_A NF-kappab P65 (RELA) su 40.1 64 0.0022 28.9 6.7 84 4-90 3-100 (114)
32 2v0o_A FCHO2, FCH domain only 38.7 3.2E+02 0.011 27.6 14.8 43 292-335 177-220 (276)
33 3a7m_A Flagellar protein FLIT; 37.0 65 0.0022 29.3 6.4 90 269-381 5-94 (122)
34 1imh_C NF-AT5, tonebp, nuclear 36.7 74 0.0025 33.2 7.6 83 3-89 180-279 (281)
35 3nkz_A Flagellar protein FLIT; 35.7 75 0.0026 28.9 6.6 92 267-381 6-97 (123)
36 4gco_A Protein STI-1; structur 33.5 81 0.0028 27.8 6.6 22 288-309 23-44 (126)
37 3dwc_A TCMCP-1, metallocarboxy 31.8 6E+02 0.021 28.7 17.0 130 213-360 82-225 (505)
38 2jqq_A Conserved oligomeric go 31.4 55 0.0019 31.9 5.1 88 248-335 74-177 (204)
39 3bu8_A Telomeric repeat-bindin 30.2 1E+02 0.0036 30.8 7.0 35 266-300 89-136 (235)
40 3h3m_A Flagellar protein FLIT; 29.0 80 0.0027 28.8 5.6 91 269-382 18-108 (126)
41 3haj_A Human pacsin2 F-BAR; pa 28.3 6.6E+02 0.023 28.0 15.3 47 291-337 205-251 (486)
42 2f6h_X Myosin-2, type V myosin 28.0 6.3E+02 0.022 27.7 14.7 132 711-844 143-289 (419)
43 1a3q_A Protein (nuclear factor 26.2 1.9E+02 0.0064 30.3 8.5 83 4-89 185-284 (285)
44 2l0d_A Cell surface protein; s 25.7 53 0.0018 29.5 3.7 30 1-31 1-33 (114)
45 1wfd_A Hypothetical protein 15 25.4 1.1E+02 0.0038 26.1 5.7 48 289-336 26-81 (93)
46 2fzt_A Hypothetical protein TM 25.1 2.5E+02 0.0085 23.0 7.0 43 278-320 4-46 (79)
47 2v6x_A Vacuolar protein sortin 23.3 1.3E+02 0.0046 25.0 5.7 47 289-335 24-78 (85)
48 2w2u_A Hypothetical P60 katani 23.0 86 0.0029 26.3 4.3 45 288-332 29-81 (83)
49 1nfk_A Protein (nuclear factor 22.7 2E+02 0.0068 30.6 8.0 85 3-90 208-311 (325)
50 4ga2_A E3 SUMO-protein ligase 22.1 2.3E+02 0.0077 25.4 7.7 23 288-310 41-63 (150)
51 4avm_A Bridging integrator 2; 21.9 4E+02 0.014 26.7 10.1 31 424-454 174-204 (237)
52 3zx6_A HAMP, methyl-accepting 21.8 3.8E+02 0.013 28.4 10.4 131 169-303 176-323 (341)
53 1p7h_L Nuclear factor of activ 21.5 2.7E+02 0.0092 29.0 8.6 82 4-89 185-284 (286)
54 3bmv_A Cyclomaltodextrin gluca 21.4 3.4E+02 0.012 31.8 10.9 67 3-75 497-563 (683)
55 1cyg_A Cyclodextrin glucanotra 21.1 3.5E+02 0.012 31.7 10.9 66 3-74 493-558 (680)
56 1oy3_C Transcription factor P6 20.9 2.1E+02 0.0073 26.3 6.8 83 4-89 3-99 (136)
57 1ikn_A P65, protein (NF-kappa- 20.4 2E+02 0.0068 30.0 7.3 85 3-90 174-272 (286)
58 3okq_A BUD site selection prot 20.3 2.5E+02 0.0085 26.0 7.0 19 311-329 79-98 (141)
No 1
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=99.79 E-value=6.8e-20 Score=165.32 Aligned_cols=91 Identities=58% Similarity=1.025 Sum_probs=80.7
Q ss_pred CCCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC-ceeeEEEEEecCCcc
Q psy10164 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK-GRGEIIVSTSLGGEG 80 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~~g~v~V~v~~~~~~ 80 (887)
||+|.|++|+|.+||+||+|||+|+|||.+.+||.+|+|||++|.+.++|.++++|+|+++++. +.|+|.|++..++.+
T Consensus 5 ~p~P~It~i~P~~Gp~GT~vTI~G~nlg~~~sdv~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~~~g~V~V~v~~~~~~ 84 (99)
T 1uad_C 5 RQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTKSGGRG 84 (99)
T ss_dssp CCCCEEEEEESSEESTTCEEEEEEECSCSSGGGEEEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEETTTEEC
T ss_pred CCCCEEEEEECCCcCCCCEEEEEEEeCCCCcccceEEEECCEEceEeeceeecCEEEEEeCCCCCcceeEEEEECCCCcE
Confidence 6779999999999999999999999999999999779999999998767889999999998877 589999999764456
Q ss_pred cceeeecccccC
Q psy10164 81 TCTIQFRGYHET 92 (887)
Q Consensus 81 ~s~~~F~~~~P~ 92 (887)
.+...|+++.|.
T Consensus 85 ~s~~~F~y~~P~ 96 (99)
T 1uad_C 85 TSTVSFKLLKPE 96 (99)
T ss_dssp EESSCCEECCC-
T ss_pred EecceEEEeCce
Confidence 778899888775
No 2
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=99.46 E-value=3.9e-14 Score=171.13 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=63.6
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCC------CCeeeEEEcCccCeeccccccCCEEEEEeCCCC-ceeeEEEEE
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQP------NDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK-GRGEIIVST 74 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~------~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~-~~g~v~V~v 74 (887)
+|+|++|+|..||. ||+|||+|+|||.+. +.+ .|+|||.+|.+...+.++++|+|+++++. +.++|.|++
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~-~V~igg~~C~~~~~~~s~t~I~C~tp~~~~~~~~v~V~v 619 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKT-RVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSIII 619 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTC-EEEETTEECEECGGGCCSSEEEEECCC-----CCCEEEE
T ss_pred CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCccc-EEEECCCccceeeeeccCCEEEEEeCCCCCCCccEEEEE
Confidence 69999999999999 999999999999864 234 89999999998644678899999999877 577888888
Q ss_pred ecCCcccceeee-------cccccCCCCCc----------------eeEEEEcCcccccccccc----cc-cCCCCCCCC
Q psy10164 75 SLGGEGTCTIQF-------RGYHETIGPLK----------------ESAVWIEEAPIQSLSWSR----RS-MSPSSYQIE 126 (887)
Q Consensus 75 ~~~~~~~s~~~F-------~~~~P~~gp~~----------------~~~V~i~~~~C~~~~~~~----~~-tsps~~~~~ 126 (887)
..+....+...| +++.|..||.+ ++.|.||+.+|. +...+ .| +||....+.
T Consensus 620 ~~~~~~~~~~~FtY~~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~~C~-i~~~s~t~I~C~tP~~~~~g~ 698 (727)
T 2uzx_B 620 SNGHGTTQYSTFSYVDPVITSISPKYGPMAGGTLLTLTGNYLNSGNSRHISIGGKTCT-LKSVSNSILECYTPAQTISTE 698 (727)
T ss_dssp ECSSCEEEEECCBCCCC---------------------------------------------------------------
T ss_pred eCCcceecccccccccceeEEECCCccccCCCEEEEEEEECCCCCCceEEEECCEEee-EEeecCCEEEEEcCCCCCCce
Confidence 765433334445 67789999986 467889999997 54333 45 444444456
Q ss_pred cCeEEEEecccccC
Q psy10164 127 DPLGLSVEREDRKI 140 (887)
Q Consensus 127 dPLgl~v~~~~~~~ 140 (887)
.||.|.+++..+..
T Consensus 699 ~~V~V~idg~~~~~ 712 (727)
T 2uzx_B 699 FAVKLKIDLANRET 712 (727)
T ss_dssp --------------
T ss_pred EEEEEEECCEEecC
Confidence 78888999876544
No 3
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.5e-10 Score=130.68 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=73.0
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCC----
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGG---- 78 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~---- 78 (887)
.+|+||+|+|++|++||+|+|+|+|||...+++ .|+|||++|.++ ..++++|+|++|...+.|++.|++..+.
T Consensus 16 ~p~~i~~~~P~~g~~~~~~~i~G~nfg~~~~~~-~v~~~~~~~~v~--~~~~~~i~~~vp~~~~~g~~~v~~~~~~~~~~ 92 (430)
T 3tc9_A 16 KPVVISEFSPKEGGLGTRMLLYGENFGSDISKI-KVTIGGQDSKVV--GAKGKSLYCVVPAKAYDGDIKLSILNDEGEEI 92 (430)
T ss_dssp SCCEEEEEECSEECTTCEEEEEEECCCSCGGGE-EEEETTEEECEE--EECSSEEEEECCTTCTTCCEEEEEECTTSCEE
T ss_pred CCCEEEEEcCCCCCCCCEEEEEEEcCCCCccce-EEEECCEEEEEE--EECCCEEEEEeCCCCCCccEEEEEecCCccee
Confidence 367999999999999999999999999988888 999999999997 6889999999999888899999988765
Q ss_pred -cccceeeecc
Q psy10164 79 -EGTCTIQFRG 88 (887)
Q Consensus 79 -~~~s~~~F~~ 88 (887)
.+.++.+|++
T Consensus 93 ~~~~~~~~F~y 103 (430)
T 3tc9_A 93 ANTEANEKFVY 103 (430)
T ss_dssp EEEECSSCCEE
T ss_pred eEEEEeeEEEE
Confidence 2456777754
No 4
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=98.97 E-value=1.2e-09 Score=97.09 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCcc--CeeccccccCCEEEEEeCCCCceeeEEEEEecC
Q psy10164 2 SPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCD--CLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLG 77 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~--C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~ 77 (887)
++.-.|++|+|..||. ||+|+|+|.+|..+. ++ .|++|+.+ |.+ +++..|.|.++|. ..|.|.|.+..+
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs-~~-~~~fG~~~vpa~~----~s~~vl~C~tPp~-~~G~v~~~v~~d 76 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEASN-NY-SCLFDQISVPASL----IQPGVLRCYCPAH-DTGLVTLQVAFN 76 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCCSS-CE-EEEETTEEEECEE----EETTEEEEECCCC-CSEEEEEEEEET
T ss_pred CCcEEEEEECCCcccCCCCEEEEEEeECCCCCc-cE-EEEECCEEEeEEE----eECCEEEEEecCC-CCceEeEEEEEC
Confidence 3566899999999999 999999999999885 45 99999966 554 5678899999985 667676666655
Q ss_pred Ccccc-eeeecccc-cCCC
Q psy10164 78 GEGTC-TIQFRGYH-ETIG 94 (887)
Q Consensus 78 ~~~~s-~~~F~~~~-P~~g 94 (887)
+...+ ...|++.. |+.|
T Consensus 77 ~~~~s~~~~FeY~~~Pt~~ 95 (95)
T 2cxk_A 77 NQIISNSVVFEYKSGPSSG 95 (95)
T ss_dssp TEECSCCEEEEECCC----
T ss_pred CeecCCceEEEEeCCCCCC
Confidence 54223 45677664 6654
No 5
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.97 E-value=5.3e-10 Score=128.01 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCCc---
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGGE--- 79 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~~--- 79 (887)
.+++|++|+|++|++||+|+|+|+|||+..+.+ +|+|||++|.++ ..++++|+|++|+..+.|+|.|+|..++.
T Consensus 18 ~p~~i~~~~P~~g~~~~~~~i~G~nfg~~~~~~-~v~~~~~~a~v~--~~~~~~i~~~vp~~~~~g~~~v~v~~~~~~~~ 94 (433)
T 4hw6_A 18 EEIVVEKFLPTEGRKGTRVVVYGRNFGNDVSKV-KVTIGGYPAKVI--NVKGESLLCICPSKAYEGDVKVSVVGDDEAEL 94 (433)
T ss_dssp SCCEEEEEESSEECTTCEEEEEEECCCSCGGGE-EEEETTEEEEEE--EECSSEEEEECCTTCTTCCEEEEEECTTSCEE
T ss_pred CCCEEEEECCCCCCCCCEEEEEeECCCCCccee-EEEECCEEEEEE--EeCCCEEEEEeCCCCCCCCEEEEEecCCccee
Confidence 356999999999999999999999999998877 999999999997 68899999999998889999999877652
Q ss_pred --ccceeeecc
Q psy10164 80 --GTCTIQFRG 88 (887)
Q Consensus 80 --~~s~~~F~~ 88 (887)
+.++.+|++
T Consensus 95 ~~~~~~~~F~y 105 (433)
T 4hw6_A 95 KSGVCEAKFDY 105 (433)
T ss_dssp EEEECSSCCEE
T ss_pred eEEEeeeEEEE
Confidence 455667743
No 6
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.9e-09 Score=124.28 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=72.4
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCC---c
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGG---E 79 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~---~ 79 (887)
.+++|++|+|.+|+.||+|+|+|+|||+..++| .|+|||++|.++ ..+.++|+|++|...+.|++.|+|..+. .
T Consensus 16 ~p~~i~~~~P~~G~~~t~~~I~G~nFg~d~~~i-~V~~~~~~a~v~--~~~~~~i~~~vp~~~~~G~~~v~v~~~~~~~~ 92 (496)
T 3kya_A 16 KPVAISDFTPKEGGAYQKLLIYGENFGTDVSKV-KVKIGGKDAIVI--NVKSTYVYCFVPSGAFSGEIEITVGEGENAVT 92 (496)
T ss_dssp SCCEEEEEECSEECTTCEEEEEEECCCSCGGGE-EEEETTEEECEE--EECSSEEEEECCTTCTTCCEEEEESCGGGCEE
T ss_pred CCcEEEEEcCCCCCCCCEEEEEeecCCCCccee-EEEECCEEEEEE--EECCCEEEEEECCCCCCCcEEEEEEecCCceE
Confidence 367999999999999999999999999999988 999999999997 7889999999999888899999987654 2
Q ss_pred ccceeeecc
Q psy10164 80 GTCTIQFRG 88 (887)
Q Consensus 80 ~~s~~~F~~ 88 (887)
+.+...|++
T Consensus 93 ~~~~~~F~Y 101 (496)
T 3kya_A 93 TTASTTFSY 101 (496)
T ss_dssp EECSSCCEE
T ss_pred EEecceEEE
Confidence 455667743
No 7
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.59 E-value=5e-08 Score=110.69 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcC----ccCeeccccccCCEEEEEeCCCCc-eeeEEEEEecCC
Q psy10164 4 PPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICG----CDCLLSAEWKSPNKIIARSGPGKG-RGEIIVSTSLGG 78 (887)
Q Consensus 4 ~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~----~~C~~~~~~~~~~~IvC~t~~~~~-~g~v~V~v~~~~ 78 (887)
+|+|++|+|.+|..||.|+|+|+|||+..+++ .|+||| ++|.++ ..+.++|+|.+|.... ..+|.|.+..+
T Consensus 17 ~~~~~~~~p~~g~~~~~~~i~g~nfg~~~~~~-~v~~~~~~~~~~~~v~--~~~~~~~~~~vp~~~~g~~~i~v~~~~~- 92 (409)
T 3hrp_A 17 PVTVESFMPVEGKLREKVIVKGSNFGTDKSKV-KVYFVDEAAERLSTVI--GIDNNTLYCLAPRQLPGGNRIKVIVDGK- 92 (409)
T ss_dssp CCEEEEEECSEECTTCEEEEEEECCCSCGGGE-EEEEECSSCEEEEEEE--EEETTEEEEECCSCCSEEEEEEEEETTE-
T ss_pred CcEEEEEcCCCCCCCcEEEEEeEcCCCCccce-EEEECCcccceEEEEE--EECCCEEEEEECCCCCCcEEEEEEECCe-
Confidence 56999999999999999999999999999988 999999 999998 6789999999998876 45666665443
Q ss_pred cccceeee
Q psy10164 79 EGTCTIQF 86 (887)
Q Consensus 79 ~~~s~~~F 86 (887)
...++..|
T Consensus 93 ~~~~~~~F 100 (409)
T 3hrp_A 93 EVTTDGTF 100 (409)
T ss_dssp EEECSSCE
T ss_pred eEEEeeeE
Confidence 24455566
No 8
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=98.35 E-value=1.1e-06 Score=81.03 Aligned_cols=72 Identities=29% Similarity=0.388 Sum_probs=59.8
Q ss_pred CCCCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCC
Q psy10164 1 MSPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGG 78 (887)
Q Consensus 1 ~~p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~ 78 (887)
|..+|.|+.+.|.+||. |+.|+|.|.||-.| . .|.+|+..-- .+..+++.|+|.++|+...|.|.|++...+
T Consensus 2 ~~~~P~I~~i~P~eG~~~GG~~V~I~G~nF~~G---l-qV~FG~t~~w--~e~itphairv~~PP~~~pG~V~VTl~~k~ 75 (138)
T 3muj_A 2 MEATPCIKAISPSEGWTTGGATVIIIGDNFFDG---L-QVVFGTMLVW--SELITPHAIRVQTPPRHIPGVVEVTLSYKS 75 (138)
T ss_dssp --CCCEEEEEESSEEETTCCCEEEEEEESCCTT---C-EEEETTEEEC--EEEEETTEEEEECCCCSSCEEEEEEEEETT
T ss_pred CCCCCceeEecCCCCCccCCeEEEEeCCCcccC---C-EEEECCeeee--eeeecccceEEECCCCCCCCceEEEEeecC
Confidence 77889999999999999 99999999999555 3 7999996422 346788999999999988999999997654
No 9
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=98.33 E-value=6.6e-08 Score=116.83 Aligned_cols=71 Identities=30% Similarity=0.357 Sum_probs=1.7
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCC
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGG 78 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~ 78 (887)
+|+|++|+|..||. ||.|||+|+||+.+. ++ .|+||+.+|.+. ..+++.|+|+++++...|.+.|+|..++
T Consensus 635 ~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~-~~-~V~ig~~~C~i~--~~s~t~I~C~tP~~~~~g~~~V~V~idg 707 (727)
T 2uzx_B 635 DPVITSISPKYGPMAGGTLLTLTGNYLNSGN-SR-HISIGGKTCTLK--SVSNSILECYTPAQTISTEFAVKLKIDL 707 (727)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred cceeEEECCCccccCCCEEEEEEEECCCCCC-ce-EEEECCEEeeEE--eecCCEEEEEcCCCCCCceEEEEEEECC
Confidence 69999999999999 999999999999884 35 899999999975 6788899999998876665555554444
No 10
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=97.88 E-value=2.5e-05 Score=82.19 Aligned_cols=70 Identities=27% Similarity=0.376 Sum_probs=60.5
Q ss_pred CCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEecCC
Q psy10164 3 PPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTSLGG 78 (887)
Q Consensus 3 p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~~~~ 78 (887)
++|.|+.|+|.+||. |+.|+|.|.||-.| . .|.+|+..-- .++.+++.|.|.++|+..+|.|.|++...+
T Consensus 230 ~tP~IkaIsPnEG~~tGG~tV~IiGenFf~G---L-QVvFGtt~vW--selITphAIRV~tPPr~~PGvVdVTLs~ks 301 (402)
T 3mlp_A 230 ATPCIKAISPSEGWTTGGATVIIIGDNFFDG---L-QVIFGTMLVW--SELITPHAIRVQTPPRHIPGVVEVTLSYKS 301 (402)
T ss_dssp SCCEEEECSSCEECTTCCCEEEEEEECCCTT---C-EEEETTEEEC--EEEEETTEEEEECCCCSSCEEEEEEEEETT
T ss_pred CCcceEEecCCCCCccCCeEEEEeCCCcccC---C-EEEEccEeee--eEEecccceEEECCCCCCCCceEEEEEecC
Confidence 679999999999999 99999999999555 3 7999987632 357889999999999988999999997665
No 11
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=96.82 E-value=0.0016 Score=71.11 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=56.5
Q ss_pred CCCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcC-ccCe-eccccccCCEEEEEeCCCCc--eeeEEEEEecC
Q psy10164 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICG-CDCL-LSAEWKSPNKIIARSGPGKG--RGEIIVSTSLG 77 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~-~~C~-~~~~~~~~~~IvC~t~~~~~--~g~v~V~v~~~ 77 (887)
.|.|+|++++|..|+.|+.|||+|+||+.. ..|+++| .+-. +..-..+.++|.-++|.... .|.|.|....|
T Consensus 111 aPaPtITSISpe~~~aGd~VTItGsNF~~i----skV~FgG~veaT~~~svs~S~T~ItVtVPaGA~~~sG~ItVvT~~G 186 (439)
T 3orj_A 111 AAAPSITKISNCMPNVGEPIIVYGSGLTEI----AKVVFPGNVVVTEGIISDLDGEYFMVDMPAGVSEEGGSIFVEGSNG 186 (439)
T ss_dssp CSCCEEEEESCSSCCTTCEEEEEEECCTTC----CEEEETTTEEECSSCEECTTSSEEEEECCTTCCTTCBCCEEEETTE
T ss_pred cCCCEEEEeCCCCCCCCCEEEEEccCCCce----eEEEECCCeeEEEEEEecCCCCEEEEEecCCCcCCCceEEEEeCCC
Confidence 488999999999998899999999999665 3899987 4332 21002267899998988776 89999987655
Q ss_pred C
Q psy10164 78 G 78 (887)
Q Consensus 78 ~ 78 (887)
.
T Consensus 187 t 187 (439)
T 3orj_A 187 G 187 (439)
T ss_dssp E
T ss_pred c
Confidence 3
No 12
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=96.39 E-value=0.14 Score=52.85 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=143.3
Q ss_pred HhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcc-------hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHH
Q psy10164 274 RYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTD-------VALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQ 346 (887)
Q Consensus 274 r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~-------~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~ 346 (887)
..+-+-+.|-.|.-+|...+|+.||.--.+++.++.... .....-+-..+++....+...|-+.+.. .....
T Consensus 14 ~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~ 92 (235)
T 2d2s_A 14 RLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIV 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHH
T ss_pred hHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHH
Confidence 356667788999999999999999999999999887522 3345567777888888888888888844 67788
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCcccCCCCCCCchHHHHH
Q psy10164 347 EQKTLIRNLVNLDAGGDPGWDAIISQYEYITHLLESCKNEHMLLDVENSKPKKPKHTRSASGSHILEPAPVFVPQPILCV 426 (887)
Q Consensus 347 ~~~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~efv 426 (887)
+..+.|+.|.+||-.+.-.-.||.++..+|...+.++ . -+.+...|+
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l------~---------------------------~~gd~~~Yi 139 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQI------G---------------------------SVDNPTNYL 139 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-----------------------------------CCSHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHh------c---------------------------ccCCHHHHH
Confidence 9999999999999888778899999999998877432 1 113466788
Q ss_pred HHHHHHHHhhhhHHHhhhhhcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccchhch
Q psy10164 427 EELTAIVSERFPDLWKLGQSYFSGELQGTVEPTNQLMFKKIILDVVALSSKSIRSSVLPHTCDSSVKTFSLIYKESLGSH 506 (887)
Q Consensus 427 ~~l~~~l~~~l~~fw~~~~~y~~g~~~~~~~~~~~~~~~~m~~~~i~~~~~li~~~~~~~s~~~~~~~~~g~~sls~~~~ 506 (887)
..++.++-+. .-+++..|..-+-.. +..-...+-.++.+-++.|+++++..+... . .+ |
T Consensus 140 ~~Ls~i~Fs~---I~~t~~~f~~~F~~~--~~~~~S~lV~Wa~~eve~f~~l~~rqv~~~---~------------~l-~ 198 (235)
T 2d2s_A 140 TQLAVIRFQT---IKKTVEDFQDIFKEL--GAKISSILVDWCSDEVDNHFKLIDKQLLND---E------------ML-S 198 (235)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------C-C
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhCCC--CcccccHHHHHHHHHHHHHHHHHHHHccCC---c------------cH-H
Confidence 8888766555 334444554422110 000124688889999999999999998651 1 11 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q psy10164 507 LPTALQYLCDLYSNLLALDLP 527 (887)
Q Consensus 507 L~~~l~~i~~~~~~l~~l~~~ 527 (887)
.+|+...+.-+..|...++.
T Consensus 199 -~ecv~i~~~~~~~L~~vGLd 218 (235)
T 2d2s_A 199 -PGSIKSSRKQIDGLKAVGLD 218 (235)
T ss_dssp -HHHHHHHHHHHHGGGGGTCC
T ss_pred -HHHHHHHHHHHHHHHHcCCC
Confidence 27888888888888877653
No 13
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.21 E-value=0.0085 Score=65.01 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHhhcc--CCCCCccchhhHhhhHH
Q psy10164 746 HFEWDTVIPPIDLKPYAKEIIGNIITVHAELVRIVP-SVISKVISGIVETVAEELSRLMSC--VTKFSECGKQQAFIDMS 822 (887)
Q Consensus 746 ~~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~~~~p-~L~~~IL~~l~~~~~~~ll~~~~~--v~~fs~~Gl~Qa~lDi~ 822 (887)
.+||.+..+|.+.++|+.+++..|-.+-+ ....-| ++...+..+..+.+++.++..+-. |++|+.+|+.|.-+|+.
T Consensus 205 ~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~ 283 (325)
T 2a2f_X 205 AYDWLLVEPPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLM 283 (325)
T ss_dssp CTTCC----CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHH
T ss_pred ccCCCCCCCCCCccHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHH
Confidence 39999888899999999999999988888 454444 577888899999999999998864 59999999999999999
Q ss_pred HHHHHhhh
Q psy10164 823 SLKNTLSQ 830 (887)
Q Consensus 823 fl~~~L~~ 830 (887)
|+.+....
T Consensus 284 ~lE~fa~~ 291 (325)
T 2a2f_X 284 QCEFFAAS 291 (325)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988744
No 14
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=94.95 E-value=0.0091 Score=52.70 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=44.4
Q ss_pred ceeeecccccCCCCCc----------------eeEEEEcCc--ccccccccc--cccCCCCCCCCcCeEEEEecccccCC
Q psy10164 82 CTIQFRGYHETIGPLK----------------ESAVWIEEA--PIQSLSWSR--RSMSPSSYQIEDPLGLSVEREDRKIP 141 (887)
Q Consensus 82 s~~~F~~~~P~~gp~~----------------~~~V~i~~~--~C~~~~~~~--~~tsps~~~~~dPLgl~v~~~~~~~~ 141 (887)
+....+.+.|.+||.+ ++.|.+|+. ||. +.... .|.+|....+..|+.|.+|+... .
T Consensus 5 ~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~vpa~-~~s~~vl~C~tPp~~~G~v~~~v~~d~~~~--s 81 (95)
T 2cxk_A 5 SSGMVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPAS-LIQPGVLRCYCPAHDTGLVTLQVAFNNQII--S 81 (95)
T ss_dssp CCSCCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEEEECE-EEETTEEEEECCCCCSEEEEEEEEETTEEC--S
T ss_pred CcEEEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEEEeEE-EeECCEEEEEecCCCCceEeEEEEECCeec--C
Confidence 3445577888888887 788899986 476 43333 66444345566788888886543 2
Q ss_pred ccccccCCCCCCCCCcc
Q psy10164 142 EDDLHELFPDGSGDLSL 158 (887)
Q Consensus 142 ~~~~~~~F~~ys~dp~~ 158 (887)
+ ...| +|..||++
T Consensus 82 ~---~~~F-eY~~~Pt~ 94 (95)
T 2cxk_A 82 N---SVVF-EYKSGPSS 94 (95)
T ss_dssp C---CEEE-EECCC---
T ss_pred C---ceEE-EEeCCCCC
Confidence 1 2359 99999975
No 15
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=94.88 E-value=0.094 Score=57.48 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=62.0
Q ss_pred CCCCeeeeee---c---------CCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCc---
Q psy10164 2 SPPPVVTGIS---P---------KEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKG--- 66 (887)
Q Consensus 2 ~p~P~It~i~---P---------~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~--- 66 (887)
+-+|+|++|+ | +.|.+|+.|+|.|+||+.. ..|.+||+...+...|.++++|.-++|....
T Consensus 10 ~~~i~It~vy~~~~~p~~~Ds~IT~a~pGd~ItItGsNL~~v----tkV~FNdvea~fnstyiTdtsI~VtIPs~aP~G~ 85 (439)
T 3orj_A 10 SSVMNITGIYLEDAKSNVPDRLVDFARLGQLIRIEGEGFNGL----KKVYINGYNCYFNPVFVSNKSFLVSVNSKVPTTE 85 (439)
T ss_dssp CSSCEEEEEEEECTTSSSSEEEESEEETTCEEEEEEECCTTC----CEEEETTEECCBCGGGCCSSEEEEECCTTCCSTT
T ss_pred cCCceEEEEEecCCCccccccccccccCCCEEEEEeeCCCCe----eEEEECCEEeeeccccccCCEEEEEcCCCCCCcc
Confidence 3468888885 1 2566699999999999654 4899999998765557888999887775442
Q ss_pred -----eeeEEEEEecCCcccceeee---------cccccCCCCCc
Q psy10164 67 -----RGEIIVSTSLGGEGTCTIQF---------RGYHETIGPLK 97 (887)
Q Consensus 67 -----~g~v~V~v~~~~~~~s~~~F---------~~~~P~~gp~~ 97 (887)
.+.|.|....+ . ....| +++.|..++.+
T Consensus 86 vd~~VtnkI~VvTdgG-t--~ty~FtVlaPaPtITSISpe~~~aG 127 (439)
T 3orj_A 86 ADENVRNTIRLVKDGG-E--YVYDFQIRAAAPSITKISNCMPNVG 127 (439)
T ss_dssp SCTTTTTEEEEEETTE-E--EEEECEEECSCCEEEEESCSSCCTT
T ss_pred ccccccceEEEEECCC-E--EeeeeEEecCCCEEEEeCCCCCCCC
Confidence 44677766322 2 22234 67778777655
No 16
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=92.91 E-value=12 Score=41.40 Aligned_cols=152 Identities=9% Similarity=0.034 Sum_probs=95.8
Q ss_pred eEEEEecchHHHHHhhhHHHHHHHHHcCCCCc----hHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCC
Q psy10164 673 RLLLTLSNCQYICFFIFPRLDDLFIQNGLPTI----KESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFE 748 (887)
Q Consensus 673 rlLLtLsNl~~l~~~~~p~L~~~f~~~f~~~l----t~~~~~i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~d 748 (887)
.++.+++|+..+.. .+..|...|.+.-.... ......+.+.+..+.+.-++..++.--..|...+ +.+.+ ..
T Consensus 138 ~liA~~Nn~~~~~e-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~-~~lft--~~ 213 (399)
T 2fji_1 138 YLIAVSNDQMKAAD-YAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPY-QEIFS--KT 213 (399)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHH-TTTTS--GG
T ss_pred hhhhhhccHHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC--ch
Confidence 44555566665544 55666666664333221 1122233334444444322222222222233222 22234 79
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHH-hhcchhhHHHHHHHHHHHHHHHHHHhhccCCCCC---ccchhhHhhhHHHH
Q psy10164 749 WDTVIPPIDLKPYAKEIIGNIITVHAEL-VRIVPSVISKVISGIVETVAEELSRLMSCVTKFS---ECGKQQAFIDMSSL 824 (887)
Q Consensus 749 W~~~~~p~~Vr~yv~e~L~~LV~Vhsev-~~~~p~L~~~IL~~l~~~~~~~ll~~~~~v~~fs---~~Gl~Qa~lDi~fl 824 (887)
|.... +|..++..+-..-... ..+.|++...++..+...+..+.+.++..-.+|. ..|..|+.-|++-|
T Consensus 214 W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l 286 (399)
T 2fji_1 214 WYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIF 286 (399)
T ss_dssp GTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHH
T ss_pred hcCCc-------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Confidence 97532 8888888888888888 5788889999999999998877777776434677 88999999999999
Q ss_pred HHHhhhhcchh
Q psy10164 825 KNTLSQYCTDS 835 (887)
Q Consensus 825 ~~~L~~y~t~~ 835 (887)
...|..|.+..
T Consensus 287 ~~~f~~~~~~~ 297 (399)
T 2fji_1 287 YQLFVKVLDGN 297 (399)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHhcccc
Confidence 99999998743
No 17
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=92.84 E-value=1.6 Score=41.09 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHHHHhhccCCCCCccchhh--HhhhHHHH
Q psy10164 748 EWDTVIPPIDLKPYAKEIIGNIITVHAELVRIVPS-VISKVISGIVETVAEELSRLMSCVTKFSECGKQQ--AFIDMSSL 824 (887)
Q Consensus 748 dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~~~~p~-L~~~IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Q--a~lDi~fl 824 (887)
+|... |..+++|+..+.=++++.|-=+..+.|+ -+..|+..+....-+.|-++|+...--+.+|-+. ++-|++|+
T Consensus 42 ~Wd~k--~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff 119 (141)
T 3n1e_A 42 KYEVK--APVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFY 119 (141)
T ss_dssp TCCCC--SSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHH
T ss_pred HhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHH
Confidence 89743 3379999999999999999999988875 4577888888888888899998887778888876 88999999
Q ss_pred HHHhhhh
Q psy10164 825 KNTLSQY 831 (887)
Q Consensus 825 ~~~L~~y 831 (887)
...|...
T Consensus 120 ~~~L~~L 126 (141)
T 3n1e_A 120 TGNLQAL 126 (141)
T ss_dssp HHHHHTS
T ss_pred HHHhccc
Confidence 9988765
No 18
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=90.38 E-value=1 Score=53.36 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhccchhhhhhhhhhccCCCCCCCCCCC--------CCCChHHHHHHHHHHHHHHHHhh
Q psy10164 708 LELSTENLVILENK-LIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPP--------IDLKPYAKEIIGNIITVHAELVR 778 (887)
Q Consensus 708 ~~~i~~~l~~l~~~-Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p--------~~Vr~yv~e~L~~LV~Vhsev~~ 778 (887)
..+....+..+..+ +.+.++..-...+...+++.+.. -.|..-+.| ..+++-.-++|-.|...=+.+.+
T Consensus 504 FDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~--s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~ 581 (706)
T 3fhn_A 504 FQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKI--STWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDS 581 (706)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHC--CGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888 88999999999999999999986 589754422 34677788888888887777776
Q ss_pred c--chhhHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhHhhhHHHHHHHhhhh
Q psy10164 779 I--VPSVISKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQY 831 (887)
Q Consensus 779 ~--~p~L~~~IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Qa~lDi~fl~~~L~~y 831 (887)
. ++.++.+|-..+...+...+.+.+=...+||.+|+.|...|++.|-.++..+
T Consensus 582 ~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~lp 636 (706)
T 3fhn_A 582 MDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILSLP 636 (706)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 4 7778888888888888888888765568999999999999999999988844
No 19
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.59 E-value=2.7 Score=37.89 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEc----Cc-----cCeeccccccCCEEEEEeCCCC---ceee
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVIC----GC-----DCLLSAEWKSPNKIIARSGPGK---GRGE 69 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg----~~-----~C~~~~~~~~~~~IvC~t~~~~---~~g~ 69 (887)
.|.|..++..+||. |-.|-|.|.|+.. |+.-++.- |. .-.+.........|+|+|+|=. ...|
T Consensus 8 ~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~k---d~kV~F~E~~~dG~~~WE~~a~f~~d~~~q~aivf~tPpY~~~~I~~p 84 (114)
T 2yrp_A 8 LPQVEAYSPSACSVRGGEELVLTGSNFLP---DSKVVFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYSNKRVSRP 84 (114)
T ss_dssp CCEEEEEESSCEETTCCSEEEEEEESCCT---TCEEEEECBCTTSCBCCCCBCCBCTTTCBTTEEEEECCCCSCCSCSSC
T ss_pred CCEEEEecCcccccCCCCEEEEEecccCC---CCEEEEEEECCCCCcceEEeeEEChHHcccccEEEecCCCCCCccCCC
Confidence 49999999999999 9999999999953 56323442 21 0111111223457999999876 2556
Q ss_pred EEEEEec--C-Ccccceeeeccc
Q psy10164 70 IIVSTSL--G-GEGTCTIQFRGY 89 (887)
Q Consensus 70 v~V~v~~--~-~~~~s~~~F~~~ 89 (887)
|.|.+.. + +.......|+++
T Consensus 85 V~V~~~l~~~~rk~Se~~~FtY~ 107 (114)
T 2yrp_A 85 VQVYFYVSNGRRKRSPTQSFRFL 107 (114)
T ss_dssp EEEEEEEECSSSCBCCCEEEEEE
T ss_pred eEEEEEECCCCCcccCCcCcEEe
Confidence 6555533 3 222335577664
No 20
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=87.97 E-value=2 Score=46.78 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=45.8
Q ss_pred CCCCeeeeeecCCCCC-CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCC
Q psy10164 2 SPPPVVTGISPKEGPP-GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPG 64 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~-GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~ 64 (887)
.|-|.|..+. ..|.- -..+.|+|+||- .++ +|.+|+++..-. |.+++.+.|.+++-
T Consensus 326 tPvP~v~~l~-l~g~g~~amlEl~G~nF~---~~L-~VWFG~v~aeT~--yR~~e~l~c~vP~~ 382 (422)
T 3iag_C 326 TPVPVVESLQ-LNGGGDVAMLELTGQNFT---PNL-RVWFGDVEAETM--YRCGESMLCVVPDI 382 (422)
T ss_dssp CSCCEEEEEE-ECCCSSSCEEEEEEESCC---TTE-EEEETTEECCEE--EEETTEEEEECCCG
T ss_pred CCCCeEEEEE-ecCCCceeEEEEEccCCC---CCc-eEEECCCCceeE--EeccceEEEeCCCH
Confidence 4679999886 55655 789999999993 345 999999998765 89999999998873
No 21
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=76.53 E-value=1.6 Score=38.46 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=22.8
Q ss_pred EEEEcCccccccc--ccc----cc-cCCCCCCCCcCeEEEEec
Q psy10164 100 AVWIEEAPIQSLS--WSR----RS-MSPSSYQIEDPLGLSVER 135 (887)
Q Consensus 100 ~V~i~~~~C~~~~--~~~----~~-tsps~~~~~dPLgl~v~~ 135 (887)
.|+|++.+|. +. +.+ .| ++|+.. +..|+.|.++.
T Consensus 40 ~V~vgg~~C~-~~~~~~s~~~IvC~~~~~~~-~~g~V~V~v~~ 80 (99)
T 1uad_C 40 GLTICGHNCL-LTAEWMSASKIVCRVGQAKN-DKGDIIVTTKS 80 (99)
T ss_dssp EEEETTEECG-GGCEEEETTEEEEECCCCSS-SSCCEEEEETT
T ss_pred EEEECCEEce-EeeceeecCEEEEEeCCCCC-cceeEEEEECC
Confidence 7999999998 53 222 34 555543 36888888864
No 22
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=71.47 E-value=15 Score=33.44 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=52.3
Q ss_pred CCCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEE----cCc----cCeeccccc-cCCEEEEEeCCCC---ce
Q psy10164 2 SPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVI----CGC----DCLLSAEWK-SPNKIIARSGPGK---GR 67 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~v----g~~----~C~~~~~~~-~~~~IvC~t~~~~---~~ 67 (887)
+-.|.|..++=.+||. |..|-+.|.|+.- .||.-++. +|. .-.+....+ ....|+|+|||=. ..
T Consensus 1 ~s~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K--~dikV~F~e~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~ 78 (119)
T 1ikn_C 1 ASNLKIVRMDRTAGCVTGGEEIYLLCDKVQK--DDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNIT 78 (119)
T ss_dssp CCCCCEEEESCSEEETTCCCEEEEEESCCCT--TSEEEEEEEECTTSCEEEEECCCCGGGEETTTEEEEECCCCSCTTCS
T ss_pred CCCCEEEEeeCCccccCCCCEEEEEeccccC--CCCEEEEEEeCCCCCceEEeEEeChhhccccceEEEECCCCCCCCcC
Confidence 3578999999999999 9999999999942 35632233 121 001110011 1356999998876 25
Q ss_pred eeEEEEEec----CCcccceeeecccc
Q psy10164 68 GEIIVSTSL----GGEGTCTIQFRGYH 90 (887)
Q Consensus 68 g~v~V~v~~----~~~~~s~~~F~~~~ 90 (887)
.||.|.+.- ++.......|+++.
T Consensus 79 ~pV~V~i~L~r~sd~~~Sep~~FtY~P 105 (119)
T 1ikn_C 79 KPASVFVQLRRKSDLETSEPKPFLYYP 105 (119)
T ss_dssp SCEEEEEEEEETTTCCBCCCEEEEEEC
T ss_pred CCEEEEEEEEcCCCCCccCCcccEeec
Confidence 566655532 23233356776653
No 23
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=69.72 E-value=12 Score=33.28 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=50.3
Q ss_pred CCCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEc-----Cc----cCeeccccc-cCCEEEEEeCCCC---c
Q psy10164 2 SPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVIC-----GC----DCLLSAEWK-SPNKIIARSGPGK---G 66 (887)
Q Consensus 2 ~p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg-----~~----~C~~~~~~~-~~~~IvC~t~~~~---~ 66 (887)
+..|.|..++=.+||. |..|-+.|.|+.. .|| .|.+- |. .-.+....+ ....|+|+|||-. .
T Consensus 1 ~s~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K--~di-kV~F~E~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I 77 (106)
T 1u36_A 1 ASNLKIVRMDRTAGCVTGGEEIWLLCDKVQK--DDI-QIRFYEEEENGGVWEGFGDFSPTDVHRQFAICFKTPKYKDVNI 77 (106)
T ss_dssp --CCCEEEESCSEEETTCCCEEEEEESCCCT--TSC-EEEEEECC----CEEEECBCCGGGEETTTEEEEECCCCSCTTC
T ss_pred CCCCEEEEeeCCccccCCCCEEEEEeccccC--CCC-EEEEEEeCCCCCceEEeeecCHHHcccceEEEEECCCCCCCcc
Confidence 3578999999999999 9999999999943 355 34331 21 001110011 1356999999876 2
Q ss_pred eeeEEEEEec----CCcccceeeeccc
Q psy10164 67 RGEIIVSTSL----GGEGTCTIQFRGY 89 (887)
Q Consensus 67 ~g~v~V~v~~----~~~~~s~~~F~~~ 89 (887)
..||.|.+.- ++.......|+++
T Consensus 78 ~~pV~V~~~l~r~sd~~~Sep~~FtY~ 104 (106)
T 1u36_A 78 TKPASVFVQLRRKSDLETSEPKPFLYY 104 (106)
T ss_dssp SSCEEEEEEEECTTTCCBCCCEEEEEE
T ss_pred CCCEEEEEEEEcCCCCCccCCcCcEEc
Confidence 5666665532 2222335577653
No 24
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=68.39 E-value=5.1 Score=44.48 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=43.3
Q ss_pred CCCeeeeeecCCCCC-CCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCC
Q psy10164 3 PPPVVTGISPKEGPP-GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGK 65 (887)
Q Consensus 3 p~P~It~i~P~~GP~-GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~ 65 (887)
|-|.|..+ |..|.- .-.+.++|+||- .++ +|.+|.+||.-. |.+++.+.|.+++-+
T Consensus 375 PvP~V~~~-~~~g~g~~~mlel~G~nF~---~~l-~VWfG~~~aeT~--~r~~e~l~c~vP~~s 431 (477)
T 3brd_A 375 PCPVVGSL-EVDGHGEASRVELHGRDFK---PNL-KVWFGATPVETT--FRSEESLHCSIPPVS 431 (477)
T ss_dssp SCCEEEEE-EEECSGGGCEEEEEEECCC---TTE-EEEETTEEECEE--EEETTEEEEECCCHH
T ss_pred CCCeeeEE-eecCCCceeEEEEEcccCC---CCC-eEEECCccceee--EEccceeeccCCCHH
Confidence 56777764 444444 688999999993 345 999999999876 888899999987643
No 25
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=65.37 E-value=26 Score=37.94 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=59.2
Q ss_pred EEEEecchHHHHHhhhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCCCCC----
Q psy10164 674 LLLTLSNCQYICFFIFPRLDDLFIQNGLPTIKESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEW---- 749 (887)
Q Consensus 674 lLLtLsNl~~l~~~~~p~L~~~f~~~f~~~lt~~~~~i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW---- 749 (887)
+-++|+|++++|.. |.+.+++.+...+......+.+.+..--...+++-+..-+..+...|++.+.. +-|
T Consensus 118 ~Cv~lNNie~lR~~----L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~--m~~~l~~ 191 (341)
T 3swh_A 118 PCILMNNTQQLRVQ----LEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQ--MGDILSQ 191 (341)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--HHHHHHT
T ss_pred hhhhcccHHHHHHH----HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 55788999999965 44566666666665543333333333333333333333333333344433322 222
Q ss_pred -------CCC-CCC--CCCChHHHHHHHHHHHHHHHHhh----cchhhHHHHHHHHHHHHHHHHHHhh
Q psy10164 750 -------DTV-IPP--IDLKPYAKEIIGNIITVHAELVR----IVPSVISKVISGIVETVAEELSRLM 803 (887)
Q Consensus 750 -------~~~-~~p--~~Vr~yv~e~L~~LV~Vhsev~~----~~p~L~~~IL~~l~~~~~~~ll~~~ 803 (887)
.+. -.| .++...+..++.. ++.+... ..+..+.+||.+|-+.+...+...+
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~ai~PLm~y---Ld~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i 256 (341)
T 3swh_A 192 VKGTGNVPASACSSVAQDADNVLQPIMDL---LDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTI 256 (341)
T ss_dssp CC-----------CHHHHHHHHHHHHHHH---HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccccCCccccccccccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001 1222333333332 2333333 3455677788888888877777754
No 26
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=58.52 E-value=29 Score=36.07 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhHhhhHHHHHHHhhh
Q psy10164 760 PYAKEIIGNIITVHAELV-RIVPSVISKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQ 830 (887)
Q Consensus 760 ~yv~e~L~~LV~Vhsev~-~~~p~L~~~IL~~l~~~~~~~ll~~~~~v~~fs~~Gl~Qa~lDi~fl~~~L~~ 830 (887)
||+.+.+..+-.+=.-.. ...|....+.++.++..+++.+=..+.. .+|+..|.+|.-=|+..|..++..
T Consensus 125 ~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~-~~fn~lGal~LdrDvr~li~~~~~ 195 (263)
T 3hr0_A 125 PWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK-STFNRLGGLQFDKELRSLIAYLTT 195 (263)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh-CCcCchhHHHHHHHHHHHHHHHHh
Confidence 455555544433322222 1235555666666666666555554443 789999999999999999999954
No 27
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.40 E-value=17 Score=30.45 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHHhhcC
Q psy10164 286 SNNITKNDIDAVINDYARAMNLFGK 310 (887)
Q Consensus 286 ~~~i~~~dy~~~v~dY~kak~l~~~ 310 (887)
|++.-.|+||.++.+|..|...+++
T Consensus 20 Re~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4567789999999999999776664
No 28
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=52.79 E-value=28 Score=41.45 Aligned_cols=67 Identities=24% Similarity=0.440 Sum_probs=45.6
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEe
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTS 75 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~ 75 (887)
+.|.|..+-|..|..|.+++|.|..+|..+. +|.+++. |.-+..| ++.+|.-.+| ....|...|.|.
T Consensus 497 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~~~p-~~~~g~~~~~v~ 563 (686)
T 1qho_A 497 SAPQIGSVAPNMGIPGNVVTIDGKGFGTTQG---TVTFGGV-TATVKSW-TSNRIEVYVP-NMAAGLTDVKVT 563 (686)
T ss_dssp SSCEEEEEESSEECTTCEEEEEEECCCSSCC---EEEETTE-ECCEEEE-CSSEEEEECC-SCCCEEEEEEEE
T ss_pred CCCccccccccccCCCCEEEEEeecCCCcce---EEEEecc-eeeEEEc-CCCcEEEecC-CCCCCceEEEEe
Confidence 3588999999999888889999998887644 6999995 6544233 3445554444 333454444444
No 29
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=45.30 E-value=72 Score=34.89 Aligned_cols=119 Identities=9% Similarity=-0.061 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHH----HHHHHHHhhccchhhhhhhhhhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh--hcch
Q psy10164 708 LELSTENLVILEN----KLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLKPYAKEIIGNIITVHAELV--RIVP 781 (887)
Q Consensus 708 ~~~i~~~l~~l~~----~Lf~~Yv~~~~~~l~~~i~~~v~~~~~dW~~~~~p~~Vr~yv~e~L~~LV~Vhsev~--~~~p 781 (887)
..+.+.+|+.++- ++++.+++.-...|..+| |++..+++.-. .. ....+-+..++-.|-.+|.-.. .+-|
T Consensus 134 l~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~il-P~~~~~~~~k~--~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~p 209 (386)
T 3mmi_A 134 TLIYLNDLENETLKVFDKIYSTWLVKFMKHASAHI-EIFDMVLNEKL--FK-NSGDEKFAKLFTFLNEFDAVLCKFQVVD 209 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHTCGGG--SS-SCCHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-ccccccccccc--cC-CCCccCHHHHHHHHHHHHHHHHHcCCCH
Confidence 3446777888877 899999999998898877 88865321111 11 2345668888888998988776 5788
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCC-CccchhhHhhhHHHHHHHhhh
Q psy10164 782 SVISKVISGIVETVAEELSRLMSCVTKF-SECGKQQAFIDMSSLKNTLSQ 830 (887)
Q Consensus 782 ~L~~~IL~~l~~~~~~~ll~~~~~v~~f-s~~Gl~Qa~lDi~fl~~~L~~ 830 (887)
.++.++++++...+.-.++..+=..+.+ +..--+|++.-+.-|.+=+..
T Consensus 210 ~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~ 259 (386)
T 3mmi_A 210 SMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP 259 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh
Confidence 9999999999999977777765333333 434445777666666666655
No 30
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=42.82 E-value=28 Score=31.10 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=51.5
Q ss_pred CCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcC---------ccCeeccccccCCEEEEEeCCCC---cee
Q psy10164 3 PPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICG---------CDCLLSAEWKSPNKIIARSGPGK---GRG 68 (887)
Q Consensus 3 p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~---------~~C~~~~~~~~~~~IvC~t~~~~---~~g 68 (887)
..|.|..++=.+||. |..|-+.|.|+..+ || .|.+-. .+..+. ....|+|+|+|-. ...
T Consensus 11 ~~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~--Di-~V~F~e~~WE~~~~f~~~Dvh----~Q~aIvf~tPpY~~~~I~~ 83 (110)
T 1zk9_A 11 SELRICRINKESGPCTGGEELYLLCDKVQKE--DI-SVVFSTASWEGRADFSQADVH----RQIAIVFKTPPYEDLEISE 83 (110)
T ss_dssp TTSCEEEESCSCCCTTCCCCCCEEESCCCTT--SC-CCEEEETTEEEECCCCGGGCC----CCCCCCCCCCCCSCTTCSS
T ss_pred CCCEEEEecCCccccCCCCEEEEEecccccC--Cc-EEEEechheeeccccCccccc----ccceEEEECCCCCCcccCC
Confidence 358999999999999 99999999999553 45 332211 122221 2245999998876 367
Q ss_pred eEEEEEecCC---cccc-eeeeccc
Q psy10164 69 EIIVSTSLGG---EGTC-TIQFRGY 89 (887)
Q Consensus 69 ~v~V~v~~~~---~~~s-~~~F~~~ 89 (887)
+|.|.+.--. ...| ...|+++
T Consensus 84 pV~V~i~L~r~sd~~~Sep~~FtY~ 108 (110)
T 1zk9_A 84 PVTVNVFLQRLTDGVCSEPLPFTYL 108 (110)
T ss_dssp CEEEEECCBCTTTCCBCCCEEEEEC
T ss_pred CeEEEEEEEeCCCCCccCCcCcEEc
Confidence 7777775331 1233 4567653
No 31
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=40.15 E-value=64 Score=28.93 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=50.4
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeE-EEcCc-cC--eec-cccccCCEEEEEeCCCC---ceeeEEEE
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGL-VICGC-DC--LLS-AEWKSPNKIIARSGPGK---GRGEIIVS 73 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V-~vg~~-~C--~~~-~~~~~~~~IvC~t~~~~---~~g~v~V~ 73 (887)
...|..++=.+||. |..|-+.|.++.. .|| .| +.-.. .+ .+. ........|+|+|||-. ...||.|.
T Consensus 3 ~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K--~Di-~VrF~e~~WE~~g~f~~~Dvh~Q~aIvfktPpY~~~~I~~pV~V~ 79 (114)
T 1my7_A 3 ELKICRVNRRSGSCLGGDEIFLLCDKVQK--EDI-EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVS 79 (114)
T ss_dssp SCCEEEESCSEEETTCCCEEEEEESCCCT--TSC-EEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSCEEEE
T ss_pred ccEEEEecCCceecCCCcEEEEEeccccc--CCC-EEEEEccCeEEecccChhhcccceeEEEECCCCCCCccCCCEEEE
Confidence 46788899999999 9999999999944 356 44 33210 00 010 01112356999999876 35666665
Q ss_pred Eec----CCcccceeeecccc
Q psy10164 74 TSL----GGEGTCTIQFRGYH 90 (887)
Q Consensus 74 v~~----~~~~~s~~~F~~~~ 90 (887)
+.- ++...-...|+++.
T Consensus 80 i~L~r~sd~~~Sep~~FtY~P 100 (114)
T 1my7_A 80 MQLRRPSDRELSEPMEFQYLP 100 (114)
T ss_dssp EEEEETTTTEECCCEEEEEEC
T ss_pred EEEEeCCCCCcCCCcccEEec
Confidence 532 33222255776654
No 32
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=38.71 E-value=3.2e+02 Score=27.56 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=18.5
Q ss_pred cCHHHHHHHHHHHHHhhcCcchH-HHHHHHHHHHHHHHHHHHHHH
Q psy10164 292 NDIDAVINDYARAMNLFGKTDVA-LFKKVLFEVESNINDLRNMLR 335 (887)
Q Consensus 292 ~dy~~~v~dY~kak~l~~~~~~~-~f~~v~~eve~ii~~~r~~L~ 335 (887)
.+|...|..|++++.-+ ..+.| +|+.+..=-+..+..+|..|+
T Consensus 177 ~~Y~~~v~~~n~~~~~~-~~~~~~~~~~lQ~le~~R~~~lk~~l~ 220 (276)
T 2v0o_A 177 DTYKLYVEKYALAKADF-EQKMTETAQKFQDIEETHLIHIKEIIG 220 (276)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444 22222 333333333344444444443
No 33
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=36.95 E-value=65 Score=29.26 Aligned_cols=90 Identities=10% Similarity=0.071 Sum_probs=58.1
Q ss_pred HHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH
Q psy10164 269 LTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQ 348 (887)
Q Consensus 269 ~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~ 348 (887)
..++..++-+..|...+....+.||+|.++.- -.+|-..|+.++ +.=...+.+..++
T Consensus 5 ~~ll~~Yq~i~~lS~~ML~aA~~gdWD~Lv~l-------------------E~~y~~~Ve~l~----~~~~~~~l~~~~~ 61 (122)
T 3a7m_A 5 VEFINRWQRIALLSQSLLELAQRGEWDLLLQQ-------------------EVSYLQSIETVM----EKQTPPGITRSIQ 61 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH-------------------HHHHHHHHHHHH----SSCCCSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-------------------HHHHHHHHHHHH----hCCCCCCCCHHHH
Confidence 46788899999999999999999999999842 111222222211 1112223456666
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q psy10164 349 KTLIRNLVNLDAGGDPGWDAIISQYEYITHLLE 381 (887)
Q Consensus 349 ~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~ 381 (887)
.....+|-.+=..+.-|-..+..+.+.|...|.
T Consensus 62 ~~~~~lL~~IL~nDaeIr~Ll~~rl~~L~~li~ 94 (122)
T 3a7m_A 62 DMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIG 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555556677777777777777665
No 34
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=36.70 E-value=74 Score=33.23 Aligned_cols=83 Identities=14% Similarity=0.060 Sum_probs=51.3
Q ss_pred CCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEE-cCccC--------eeccccccCCEEEEEeCCCC---cee
Q psy10164 3 PPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVI-CGCDC--------LLSAEWKSPNKIIARSGPGK---GRG 68 (887)
Q Consensus 3 p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~v-g~~~C--------~~~~~~~~~~~IvC~t~~~~---~~g 68 (887)
..|.|..++-.+||. |..|-|.|.++.. || .|.+ -..+- .+....+....|+|+|+|=. ...
T Consensus 180 ~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~K---di-kVrF~E~~~d~~~WE~~~~f~~~dvhQ~aIvf~tPpY~~~~I~~ 255 (281)
T 1imh_C 180 GVPEILKKSLHSCSVKGEEEVFLIGKNFLK---GT-KVIFQENVSDENSWKSEAEIDMELFHQNHLIVKVPPYHDQHITL 255 (281)
T ss_dssp CCCEEEEESCCEEETTCCCEEEEEEECCCT---TC-EEEEESSSCTTCSCEEEECBCGGGCCSSEEEEECCCCSCTTCSS
T ss_pred CCCeEEEEecCccccCCCcEEEEEeeccCC---Cc-EEEEEEeCCCCCceEEeEEeChhhcccceEEEECCCCccCccCC
Confidence 468999999999999 9999999999965 45 3433 21110 01111223467999998876 255
Q ss_pred eEEEEEe--cCCcccc-eeeeccc
Q psy10164 69 EIIVSTS--LGGEGTC-TIQFRGY 89 (887)
Q Consensus 69 ~v~V~v~--~~~~~~s-~~~F~~~ 89 (887)
||.|.+. .+....| ...|+++
T Consensus 256 pV~V~iqL~rsd~~~S~p~~FtY~ 279 (281)
T 1imh_C 256 PVSVGIYVVTNAGRSHDVQPFTYT 279 (281)
T ss_dssp CEEEEEEEEETTEECCSCEEEEEE
T ss_pred CeEEEEEEEeCCCCccCCcCceec
Confidence 6555553 2222233 4677664
No 35
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=35.68 E-value=75 Score=28.90 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHH
Q psy10164 267 NALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQ 346 (887)
Q Consensus 267 ~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~ 346 (887)
+...+|..++-|..|...+....+.||+|.+|.- -.++-..|+.++.. =...+.+.+
T Consensus 6 ~~~~ll~~Y~~il~lS~~ML~aA~~gdWD~Lv~l-------------------E~~y~~lVe~L~~~----~~~~~ls~~ 62 (123)
T 3nkz_A 6 RHQHLLSEYQQILTLSEQMLVLATEGNWDALVDL-------------------EMTYLKAVESTANI----TISSCSSLM 62 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHH-------------------HHHHHHHHHHHHHH----HHHTCSCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH-------------------HHHHHHHHHHHHhc----CCCCCCCHH
Confidence 4456799999999999999999999999999843 22333334444332 122334566
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q psy10164 347 EQKTLIRNLVNLDAGGDPGWDAIISQYEYITHLLE 381 (887)
Q Consensus 347 ~~~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~ 381 (887)
++.....+|-.+=..+.-|-.-+..+.+.|...|.
T Consensus 63 ~~~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~li~ 97 (123)
T 3nkz_A 63 LQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVG 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555444445566666666666665554
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=33.46 E-value=81 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHhhcCHHHHHHHHHHHHHhhc
Q psy10164 288 NITKNDIDAVINDYARAMNLFG 309 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~ 309 (887)
..++|+|+.++..|.+|..+-.
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p 44 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDP 44 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 3567777777777777766543
No 37
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=31.84 E-value=6e+02 Score=28.66 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhh-
Q psy10164 213 DTLFIFKEKFEANVKEHGLDPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITK- 291 (887)
Q Consensus 213 dtid~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~- 291 (887)
..|+.|+.+.+...+ .-..|-+.+..+++.++.+|...-. .+ .-..+.--++-+++|-....+.+..
T Consensus 82 a~lr~~~r~~~~~~~-----iP~elv~~~~~~~s~~~~~W~~Ar~----~n---Df~~F~P~L~~vv~l~re~A~~~~~~ 149 (505)
T 3dwc_A 82 ANLREMRRAWELENL-----LPEEFVERKTVLTTKAHQVWKTCRE----KN---DFAGFLPTLKELIALFREEGKLRAGN 149 (505)
T ss_dssp HHHHHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHHHHHHH----HT---CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHHH----hC---CHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 445666655544421 2278889999999999999976532 22 3344455556678888888777764
Q ss_pred ---cCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhh---------ccCCCCHHHHHHHHHHHHc-C
Q psy10164 292 ---NDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKL---------KIMPQTLQEQKTLIRNLVN-L 358 (887)
Q Consensus 292 ---~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L---------~~~~~s~~~~~~~I~~Ll~-L 358 (887)
.-||.++++|..+.. ..-++.||.++..-+-.+.+++.++= ...+.+.+.|.++...+++ |
T Consensus 150 ~~~~pYDaLLd~yEpg~t------~~~ld~iF~~lk~~L~~Ll~~i~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~l~~l 223 (505)
T 3dwc_A 150 SGKHPYEALVDIYEPGMT------LQRLDEIFGNVRSWLPELLKEVQEKQKALGETVLEPKGPFPVSKQEALCRFFMDVW 223 (505)
T ss_dssp SCCCHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHhhCCCCC------HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCCCCCHHHHHHHHHHHHHHc
Confidence 349999999976542 23344555555544444444443321 1224577888777665443 4
Q ss_pred CC
Q psy10164 359 DA 360 (887)
Q Consensus 359 ~~ 360 (887)
|-
T Consensus 224 Gf 225 (505)
T 3dwc_A 224 KF 225 (505)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 38
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=31.36 E-value=55 Score=31.89 Aligned_cols=88 Identities=10% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhh--cC--------HHHHHHH---HHHHHHhhc---Cc
Q psy10164 248 ATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITK--ND--------IDAVIND---YARAMNLFG---KT 311 (887)
Q Consensus 248 a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~--~d--------y~~~v~d---Y~kak~l~~---~~ 311 (887)
+.++....++-=+|.|.+.+.+.--......+.+.++|.+++.. |+ .+.+++- ..|+..+|. +.
T Consensus 74 Tre~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~pld~eLc~~l~~qL~~L~~~~~~ll~~l~dl 153 (204)
T 2jqq_A 74 TQEIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIEPLEEEICSGLIEQLYKLITASRRILESCADS 153 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444443333444455556666665541 11 1122222 234445544 36
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 312 DVALFKKVLFEVESNINDLRNMLR 335 (887)
Q Consensus 312 ~~~~f~~v~~eve~ii~~~r~~L~ 335 (887)
+-|...++.+|-..++++|+.-|.
T Consensus 154 ~Sp~l~h~RN~yq~i~q~Fqi~lk 177 (204)
T 2jqq_A 154 NSPYIHHLRNDYQDLLQEFQISLK 177 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888887653
No 39
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.17 E-value=1e+02 Score=30.77 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhhhcCcHHH-------------HHHHhhcCHHHHHHH
Q psy10164 266 RNALTVLQRYRFLFSLPLSI-------------SNNITKNDIDAVIND 300 (887)
Q Consensus 266 ~~~~~~l~r~~flF~LP~~L-------------~~~i~~~dy~~~v~d 300 (887)
-+|+.+++..+--+.||..+ .=||++|.|+.|.+-
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~ei 136 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKI 136 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34445555555555555544 337888888877644
No 40
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=28.99 E-value=80 Score=28.85 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH
Q psy10164 269 LTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMPQTLQEQ 348 (887)
Q Consensus 269 ~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~L~~~~~s~~~~ 348 (887)
..+|..++-|..|...+....+.||+|.+|.- -.+|-..|+.++.. =...+.+.+++
T Consensus 18 ~~ll~~Yq~Il~lS~~ML~aA~~gdWD~Lv~l-------------------E~~y~~lVe~L~~~----~~~~~l~~~~r 74 (126)
T 3h3m_A 18 APVLEIYQDIANLTSRMLAAANASNWDLVLNH-------------------GQEYVCLVERLREL----EPGEPLDEAAR 74 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------------------HHHHHHHHHHHHHH----CSCSCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH-------------------HHHHHHHHHHHHhC----CCCCCCCHHHH
Confidence 35688899999999999999999999999843 22233333333321 12334566666
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q psy10164 349 KTLIRNLVNLDAGGDPGWDAIISQYEYITHLLES 382 (887)
Q Consensus 349 ~~~I~~Ll~L~~~~dPiw~~l~~~~~~l~~~l~~ 382 (887)
.....+|-.+=..+.-|-.-+..+.+.|...|..
T Consensus 75 ~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li~~ 108 (126)
T 3h3m_A 75 GMKFDLLVRILENDAAVRDLALPQLARLSDLLGR 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555554444455666666666666665543
No 41
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.27 E-value=6.6e+02 Score=27.97 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=35.6
Q ss_pred hcCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10164 291 KNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKK 337 (887)
Q Consensus 291 ~~dy~~~v~dY~kak~l~~~~~~~~f~~v~~eve~ii~~~r~~L~~~ 337 (887)
+++|...|..|++.+..+...-..+|+.+++=-++.+..+|..||.-
T Consensus 205 ~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y 251 (486)
T 3haj_A 205 KEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 251 (486)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888887776665445577777777788888888888763
No 42
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=28.02 E-value=6.3e+02 Score=27.68 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccCC----C----CCC----CCCCCCCCChHHHHHHHHHHHHHHHHh-
Q psy10164 711 STENLVILENKLIENYIEIKSDPLVGTIEPSMYLGH----F----EWD----TVIPPIDLKPYAKEIIGNIITVHAELV- 777 (887)
Q Consensus 711 i~~~l~~l~~~Lf~~Yv~~~~~~l~~~i~~~v~~~~----~----dW~----~~~~p~~Vr~yv~e~L~~LV~Vhsev~- 777 (887)
.+..|..+..++|...++.-...|..+|.++|.... + +|. .... ...+-+..++-.|-.+|.-..
T Consensus 143 ~~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~~ 220 (419)
T 2f6h_X 143 LKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFAN--TEEYTMDDILTFFNSIYWCMKS 220 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC-----------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccccccC--CCccCHHHHHHHHHHHHHHHHH
Confidence 345666677778888887777778777777776521 0 111 1111 112346778888888888765
Q ss_pred -hcchhhHHHHHHHHHHHHHHHHHHhhccCCCCCc-cchhhHhhhHHHHHHHhhhhcchhHHHHHHHHH
Q psy10164 778 -RIVPSVISKVISGIVETVAEELSRLMSCVTKFSE-CGKQQAFIDMSSLKNTLSQYCTDSAKAYFSEAL 844 (887)
Q Consensus 778 -~~~p~L~~~IL~~l~~~~~~~ll~~~~~v~~fs~-~Gl~Qa~lDi~fl~~~L~~y~t~~a~~~~~~~~ 844 (887)
.+-|.++.++++++...+.-.++..+=..+.+.. .--+|++.-+..|.+=+...--..+...++-+.
T Consensus 221 ~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l~~a~~~L~~l~ 289 (419)
T 2f6h_X 221 FHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGLTDGTECLQHLI 289 (419)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCChhHHHHHHHHH
Confidence 5778899999999999998888887654454432 223688888888877776654444443344333
No 43
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=26.20 E-value=1.9e+02 Score=30.25 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCc-cC------eecccccc-CCEEEEEeCCCC---ceeeE
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGC-DC------LLSAEWKS-PNKIIARSGPGK---GRGEI 70 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~-~C------~~~~~~~~-~~~IvC~t~~~~---~~g~v 70 (887)
.+.|..++-.+||. |..|-|.|.++.. .|| .|.+-.. +- .+....+. ...|+|+|+|=. ...||
T Consensus 185 eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K--~Di-~V~F~E~~~~gWE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV 261 (285)
T 1a3q_A 185 NLKISRMDKTAGSVRGGDEVYLLCDKVQK--DDI-EVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPV 261 (285)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCT--TTE-EEEEEECSSSCEEEECBCCGGGEETTTEEEEECCCCSCTTCSSCE
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccC--CCC-EEEEEecCCCCCEEeeEeCHHHccceeeEEEECCCCCCCCCCCCe
Confidence 57899999999999 9999999999943 356 4433211 00 11101111 345999998876 25566
Q ss_pred EEEEe--c--CCcccceeeeccc
Q psy10164 71 IVSTS--L--GGEGTCTIQFRGY 89 (887)
Q Consensus 71 ~V~v~--~--~~~~~s~~~F~~~ 89 (887)
.|.+. . ++.......|+++
T Consensus 262 ~V~iqL~r~sd~~~Sep~~FtY~ 284 (285)
T 1a3q_A 262 TVFLQLKRKRGGDVSDSKQFTYY 284 (285)
T ss_dssp EEEEEEEETTTCCBCCCEEEEEE
T ss_pred EEEEEEEeCCCCCccCCCCceeC
Confidence 65553 2 2322335677653
No 44
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=25.73 E-value=53 Score=29.49 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCCCeeeeeecCCCCC-CCEEEEEe--ccCCCC
Q psy10164 1 MSPPPVVTGISPKEGPP-GTRVTIRG--ENLGKQ 31 (887)
Q Consensus 1 ~~p~P~It~i~P~~GP~-GT~ltI~G--~nlg~~ 31 (887)
|.|+.+|+++.|.. |. |..+||.- +|-|..
T Consensus 1 ~~PDL~vt~itP~~-~~~~~~~ti~atVkN~G~~ 33 (114)
T 2l0d_A 1 MIPDLVPVSLTPVT-VVPNTVNTMTATIENQGNK 33 (114)
T ss_dssp CCCCEEEEEEECSE-ECTTSEEEEEEEEEECSSS
T ss_pred CCCCcEEEeccCCC-cCCCCeEEEEEEEEECCCC
Confidence 89999999999988 77 88877754 566653
No 45
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.39 E-value=1.1e+02 Score=26.14 Aligned_cols=48 Identities=4% Similarity=0.196 Sum_probs=33.9
Q ss_pred HhhcCHHHHHHHHHHHHHhhcC-----cc---hHHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 289 ITKNDIDAVINDYARAMNLFGK-----TD---VALFKKVLFEVESNINDLRNMLRK 336 (887)
Q Consensus 289 i~~~dy~~~v~dY~kak~l~~~-----~~---~~~f~~v~~eve~ii~~~r~~L~~ 336 (887)
=+.|+|+.|+..|..|..+|.. .+ ...++.-..|--..++.++..|-.
T Consensus 26 D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~ 81 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3479999999999999887664 22 235666666666777777776643
No 46
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=25.13 E-value=2.5e+02 Score=22.99 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=32.6
Q ss_pred hhcCcHHHHHHHhhcCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy10164 278 LFSLPLSISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVL 320 (887)
Q Consensus 278 lF~LP~~L~~~i~~~dy~~~v~dY~kak~l~~~~~~~~f~~v~ 320 (887)
+|++-..+..+|++.||+.+-.-..+-..++..-.....+-++
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~~e~l~~i~ 46 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEIL 46 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 5667788999999999999998888888888864444444333
No 47
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.29 E-value=1.3e+02 Score=25.02 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=32.6
Q ss_pred HhhcCHHHHHHHHHHHHHhhcC-----cc---hHHHHHHHHHHHHHHHHHHHHHH
Q psy10164 289 ITKNDIDAVINDYARAMNLFGK-----TD---VALFKKVLFEVESNINDLRNMLR 335 (887)
Q Consensus 289 i~~~dy~~~v~dY~kak~l~~~-----~~---~~~f~~v~~eve~ii~~~r~~L~ 335 (887)
=+.|+|+.++..|..|-.+|-. .+ ...++.-..|--..++.++..|-
T Consensus 24 D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~ 78 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLE 78 (85)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999887654 22 23566666666666677766553
No 48
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=23.02 E-value=86 Score=26.33 Aligned_cols=45 Identities=16% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHhhcCHHHHHHHHHHHHHhhcC-----c---chHHHHHHHHHHHHHHHHHHH
Q psy10164 288 NITKNDIDAVINDYARAMNLFGK-----T---DVALFKKVLFEVESNINDLRN 332 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~~-----~---~~~~f~~v~~eve~ii~~~r~ 332 (887)
+=+.|+|+.++..|..|-.+|.. . -...++.=..|.-+.++.++.
T Consensus 29 ~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~ 81 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKE 81 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34589999999999999877654 1 122455444555555555443
No 49
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=22.71 E-value=2e+02 Score=30.60 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=51.2
Q ss_pred CCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEE-----cCc----cCeeccccc-cCCEEEEEeCCCC---ce
Q psy10164 3 PPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVI-----CGC----DCLLSAEWK-SPNKIIARSGPGK---GR 67 (887)
Q Consensus 3 p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~v-----g~~----~C~~~~~~~-~~~~IvC~t~~~~---~~ 67 (887)
..+.|..++-.+||. |..|-|.|.++.. .|| .|.+ +|. .-.+....+ ....|+|+|||=. ..
T Consensus 208 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K--~Di-~VrF~E~~~~g~~WE~~g~f~~~Dvh~Q~AIvfkTPpY~~~~I~ 284 (325)
T 1nfk_A 208 SNLKIVRMDRTAGCVTGGEEIYLLCDKVQK--DDI-QIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNIT 284 (325)
T ss_dssp CCCCEEEESCSCEESSCCCEEEEEESCCCT--TTE-EEEEEECCCSSCCEEEECBCCGGGBCTTSEEEEECCCTTSSCCC
T ss_pred CCCeEEEecCCccccCCCCEEEEEeccccc--CCC-EEEEEEeCCCCCeeEEeeeeCHHHccceeEEEEECCCCCCCCcC
Confidence 357899999999999 9999999999943 466 4433 121 001110011 1346999999876 25
Q ss_pred eeEEEEEec----CCcccceeeecccc
Q psy10164 68 GEIIVSTSL----GGEGTCTIQFRGYH 90 (887)
Q Consensus 68 g~v~V~v~~----~~~~~s~~~F~~~~ 90 (887)
.||.|.+.- ++.......|+++.
T Consensus 285 ~pV~V~iqL~r~sd~~~Sep~~FtY~P 311 (325)
T 1nfk_A 285 KPASVFVQLRRKSDLETSEPKPFLYYP 311 (325)
T ss_dssp SSEEEEEEEEETTTCCBCCCEEEEEEC
T ss_pred CCeEEEEEEEcCCCCCccCCccceeec
Confidence 566555532 22223356776643
No 50
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=22.07 E-value=2.3e+02 Score=25.44 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=18.2
Q ss_pred HHhhcCHHHHHHHHHHHHHhhcC
Q psy10164 288 NITKNDIDAVINDYARAMNLFGK 310 (887)
Q Consensus 288 ~i~~~dy~~~v~dY~kak~l~~~ 310 (887)
..+.|+|+.|+..|.+|..+-.+
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~ 63 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQER 63 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 36789999999999999877443
No 51
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=21.90 E-value=4e+02 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhcccccccC
Q psy10164 424 LCVEELTAIVSERFPDLWKLGQSYFSGELQG 454 (887)
Q Consensus 424 efv~~l~~~l~~~l~~fw~~~~~y~~g~~~~ 454 (887)
+=.+.+.+.|...||.||.....|++..++.
T Consensus 174 ~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~ 204 (237)
T 4avm_A 174 TVFEDLNQELLEELPILYNSRIGCYVTIFQN 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888899999999999998875544
No 52
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=21.84 E-value=3.8e+02 Score=28.43 Aligned_cols=131 Identities=11% Similarity=0.038 Sum_probs=60.5
Q ss_pred ccccCCChhhHHHhHHHHhhhhhhcchhhHHHHhhhhhhHHhhhHHHHHH-------HHHHHHh-------h---hhcCC
Q psy10164 169 DHHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIF-------KEKFEAN-------V---KEHGL 231 (887)
Q Consensus 169 ~~~~~~sl~~L~~~~~~l~~~i~~~~~~~~~lV~~Nf~kFi~akdtid~~-------~~~~~~~-------~---~~~~~ 231 (887)
.|-.|.+|..+-.....|-.+...-..+...+|.+.....-.....++.. ...+..- . ....
T Consensus 176 AGE~GrGFAVVAdEVRkLAe~t~~at~~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~- 254 (341)
T 3zx6_A 176 AGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQS- 254 (341)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34477778777766666665544444444444443322222222222222 2111111 0 0000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHHHhhcCHHHHHHHHHH
Q psy10164 232 DPTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYAR 303 (887)
Q Consensus 232 ~~~~~L~~~l~~~~~~a~~~~~pll~~r~k~~~l~~~~~~l~r~~flF~LP~~L~~~i~~~dy~~~v~dY~k 303 (887)
..++.+...+.++...++..-.-+-+-..-++.|.....-|++.---|.+|..- ....++..+++.|..
T Consensus 255 ~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fki~~~~---~~~~~~~~~~~~~~s 323 (341)
T 3zx6_A 255 RGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQ---QQQRETSAVVKTVTP 323 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---chhhhhhHHhccCCC
Confidence 113566666666666666666666666666777777777777777788888855 344667777777653
No 53
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=21.50 E-value=2.7e+02 Score=29.04 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCc-c---Cee------ccccccCCEEEEEeCCCC---cee
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGC-D---CLL------SAEWKSPNKIIARSGPGK---GRG 68 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~-~---C~~------~~~~~~~~~IvC~t~~~~---~~g 68 (887)
.|.|..++-.+||. |..|-|.|.++. .|| .|.+-.. + ... .........|+|+|++=. ...
T Consensus 185 ~l~I~r~s~~sg~v~GG~Ei~Llc~kv~---KDi-kVrF~E~~~dg~~~We~~g~f~~dvh~Q~AIvfkTPpY~~~~I~~ 260 (286)
T 1p7h_L 185 LPMVERQDTDSCLVYGGQQMILTGQNFT---SES-KVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRT 260 (286)
T ss_dssp CCEEEEESCSEEETTCCCEEEEEEESCC---SSC-EEEEEEECSSSCEEEEEEECBCTTTCBTTEEEEECCCCSCTTCSS
T ss_pred CCeEEEeccccccccCCcEEEEEecccC---CCc-EEEEEEECCCCCcceEEeEEeCccccccceEEEECCCCccCccCC
Confidence 48999999999999 999999999994 266 4433110 0 111 001122356999998876 255
Q ss_pred eEEEEEe--cC-Ccccceeeeccc
Q psy10164 69 EIIVSTS--LG-GEGTCTIQFRGY 89 (887)
Q Consensus 69 ~v~V~v~--~~-~~~~s~~~F~~~ 89 (887)
||.|.+. .+ +.......|+++
T Consensus 261 pV~V~~~l~r~d~~~Sep~~FtY~ 284 (286)
T 1p7h_L 261 PVKVNFYVINGKRKRSQPQHFTYH 284 (286)
T ss_dssp CEEEEEEEEETTTEECCCEEEEEE
T ss_pred CeEEEEEEeCCCCCcCCCcCceEe
Confidence 6555553 33 222225577664
No 54
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=21.41 E-value=3.4e+02 Score=31.84 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=46.5
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEEe
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVSTS 75 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v~ 75 (887)
+.|.|..+-|..|..|.+++|.|+.+|.... .|++++..-.+. .|. .++|.-.++ ....|...+++.
T Consensus 497 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~w~-~~~~~~~~~-~~~~g~~~~~~~ 563 (683)
T 3bmv_A 497 NSPLIGHVGPTMTKAGQTITIDGRGFGTTSG---QVLFGSTAGTIV-SWD-DTEVKVKVP-SVTPGKYNISLK 563 (683)
T ss_dssp CCCEEEEEECSEECTTCEEEEEEECCCSSCC---EEEETTEECEEE-EEC-SSEEEEECC-CCCSEEEEEEEE
T ss_pred CCCceecccccccCCCceEEEecccCCCcce---EEEEeccccccc-ccc-CceEEEECC-CCCCceEEEEEE
Confidence 3588888889888888899999999987644 788998855443 354 446666554 333455555554
No 55
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=21.06 E-value=3.5e+02 Score=31.70 Aligned_cols=66 Identities=21% Similarity=0.437 Sum_probs=45.5
Q ss_pred CCCeeeeeecCCCCCCCEEEEEeccCCCCCCCeeeEEEcCccCeeccccccCCEEEEEeCCCCceeeEEEEE
Q psy10164 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPGKGRGEIIVST 74 (887)
Q Consensus 3 p~P~It~i~P~~GP~GT~ltI~G~nlg~~~~di~~V~vg~~~C~~~~~~~~~~~IvC~t~~~~~~g~v~V~v 74 (887)
..|.|..+-|..|..|.+++|.|+.+|.... .|.+++..-.+. .|. .++|.-.++ ....|...+.+
T Consensus 493 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~w~-~~~~~~~~~-~~~~g~~~~~~ 558 (680)
T 1cyg_A 493 STPIIGHVGPMMGQVGHQVTIDGEGFGTNTG---TVKFGTTAANVV-SWS-NNQIVVAVP-NVSPGKYNITV 558 (680)
T ss_dssp CSCEEEEEECSEECTTCEEEEEEECCCSSCC---EEEETTEECCEE-ECC-SSEEEEECC-SCCSEEEEEEE
T ss_pred CCCceeeccccccCCCceEEEEeeecCCcce---EEEEeeeecccc-ccc-CceEEEEcC-CCCCceeEEEE
Confidence 3588888899888888889999999987654 789999855443 354 446665554 33344444444
No 56
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=20.93 E-value=2.1e+02 Score=26.35 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=49.2
Q ss_pred CCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCc--cCe--ec-cccccCCEEEEEeCCCC---ceeeEEEE
Q psy10164 4 PPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGC--DCL--LS-AEWKSPNKIIARSGPGK---GRGEIIVS 73 (887)
Q Consensus 4 ~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~--~C~--~~-~~~~~~~~IvC~t~~~~---~~g~v~V~ 73 (887)
...|..++=.+||. |..|-+-|.++.. .|| .|.+=.. .+. +. ...-....|||+|+|-. -.-+|.|.
T Consensus 3 ~L~I~r~s~~sg~v~GG~Ev~LLceKv~K--~Di-~VrF~e~~WE~~g~f~~~dVh~Q~AIvfkTPpY~~~~I~~pV~V~ 79 (136)
T 1oy3_C 3 ELKICRVNRNSGSCLGGDEIFLLCDKVQK--EDI-EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVS 79 (136)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCT--TSC-EEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSCEEEE
T ss_pred ccEEEEecCCccccCCCcEEEEEcccccc--CCC-EEEEEccCeEEecccChhheecceEEEEECCCCCCccCCCCeEEE
Confidence 46788899999999 9999999999943 466 4433211 000 10 01112346999999876 25555555
Q ss_pred Ee----cCCcccceeeeccc
Q psy10164 74 TS----LGGEGTCTIQFRGY 89 (887)
Q Consensus 74 v~----~~~~~~s~~~F~~~ 89 (887)
+. +++...-...|+++
T Consensus 80 iqL~rpsd~~~Sep~~F~Y~ 99 (136)
T 1oy3_C 80 MQLRRPSDRELSEPMEFQYL 99 (136)
T ss_dssp EEEEETTTTEECCCEEEEEE
T ss_pred EEEEeCCCCCccCCcceEEe
Confidence 43 23322224567654
No 57
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=20.37 E-value=2e+02 Score=30.03 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCCeeeeeecCCCCC--CCEEEEEeccCCCCCCCeeeEEEcCc----cCeeccccc-cCCEEEEEeCCCC---ceeeEEE
Q psy10164 3 PPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGC----DCLLSAEWK-SPNKIIARSGPGK---GRGEIIV 72 (887)
Q Consensus 3 p~P~It~i~P~~GP~--GT~ltI~G~nlg~~~~di~~V~vg~~----~C~~~~~~~-~~~~IvC~t~~~~---~~g~v~V 72 (887)
-.+.|..++-.+||. |..|-|.|.++.. .|| .|.+=.. .-.+....+ ....|+|+|+|=. ...||.|
T Consensus 174 ~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K--~di-~V~F~e~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V 250 (286)
T 1ikn_A 174 AELKICRVNRNSGSCLGGDEIFLLCDKVQK--EDI-EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRV 250 (286)
T ss_dssp CCCCEEEESCSEEETTCCCEEEEEESCCCT--TSC-EEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCSSCEEE
T ss_pred CCCeEEEecCCccccCCCCEEEEEeccccc--CCC-EEEEeccceEEeeecCHHHhccceeEEEECCCCCCCCcCCCEEE
Confidence 357899999999999 9999999999943 356 4432111 001110011 1356999998876 2556665
Q ss_pred EEec----CCcccceeeecccc
Q psy10164 73 STSL----GGEGTCTIQFRGYH 90 (887)
Q Consensus 73 ~v~~----~~~~~s~~~F~~~~ 90 (887)
.+.- ++.......|+++.
T Consensus 251 ~i~L~r~sd~~~Sep~~FtY~P 272 (286)
T 1ikn_A 251 SMQLRRPSDRELSEPMEFQYLP 272 (286)
T ss_dssp EEEEECTTTCCBCCCEEEEEEC
T ss_pred EEEEEeCCCCCcCCCcCcEEec
Confidence 5532 23223356776654
No 58
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.33 E-value=2.5e+02 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=12.9
Q ss_pred cchHHHHHHHH-HHHHHHHH
Q psy10164 311 TDVALFKKVLF-EVESNIND 329 (887)
Q Consensus 311 ~~~~~f~~v~~-eve~ii~~ 329 (887)
+..|+|++||+ |.++|+++
T Consensus 79 ~ekP~WKKiWE~EL~~VceE 98 (141)
T 3okq_A 79 TEKPHWKKTWEAELDKVCEE 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchhHHHHHHHHHHHHHH
Confidence 35689999997 55555543
Done!