RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10164
(887 letters)
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein,
immunogloblin-like fold, beta- sandwich,
endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus
norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Length = 99
Score = 127 bits (321), Expect = 5e-35
Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARS 61
PP+VTGISP EG P T+VTIRGENLG P DLIGL ICG +CLL+AEW S +KI+ R
Sbjct: 5 RQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRV 64
Query: 62 GPGK-GRGEIIVSTSLGGEGTCTIQFRGYHETI 93
G K +G+IIV+T GG GT T+ F+
Sbjct: 65 GQAKNDKGDIIVTTKSGGRGTSTVSFKLLKPEK 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 89.9 bits (222), Expect = 2e-18
Identities = 110/740 (14%), Positives = 201/740 (27%), Gaps = 261/740 (35%)
Query: 170 HHHATSFDDLRVGLSFLKRKVESQKEGQLSFLKSNVSSVMEQMDTLFIFKEKFEANVKEH 229
HHH F+ G+ + ++ SV E F + F+ +
Sbjct: 3 HHHHMDFE-----------------TGEHQYQYKDILSVFEDA-----FVDNFDCKDVQD 40
Query: 230 GLDPTIKVE----IAIKKSMTEATKLFQDVLARRERADKTRNALTVLQR-YRFLFSLPLS 284
+ E I + K T L ++ + VL+ Y+FL S P+
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIK 99
Query: 285 ISNNITKNDIDAVINDYARAMNLFGKTDVALFKKVLFEVESNINDLRNMLRKKLKIMPQT 344
I R N D +F K LR L +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLKLRQALLE-------- 146
Query: 345 LQEQKTLIRNLVNLDAGGDPG----W--------DAIISQYE----YITHLLESCKNEHM 388
L+ K ++ ++ G G W + + + ++ L++C +
Sbjct: 147 LRPAKNVL---ID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPET 197
Query: 389 LLDVENS---KPKKPKHTRSASGSHILEPAPVFVPQPILCVEELTAIVSERFPDLWKLGQ 445
+L++ + +RS S+I I + L K +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNI--------KLRI---HSI----QAELRRLLKS-K 241
Query: 446 SYFSGELQGTVEPTNQLMFKKIILDVV----ALSSKSIRSSVLPHTCDSSVKTF--SLIY 499
Y N L ++L V A ++ ++ +L T V F +
Sbjct: 242 PY-----------ENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 500 KESLGSHLPTALQY-----LCDLYSNLLALDLPTQALQIVSKLLFDLKLHTLLCLVKHCG 554
H L L Y + DLP + L + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSI-----------IA 334
Query: 555 SQIKE-LKHKENWQYEFNPNKGAITQLPKQIELLLSDMVQNIKTNVLSKDD-----KDNP 608
I++ L +NW++ +L IE L NVL +
Sbjct: 335 ESIRDGLATWDNWKHVNCD------KLTTIIESSL---------NVLEPAEYRKMFDRLS 379
Query: 609 LFNSDVAKHEFSIEVNKLLSAVVNLLDELSSSSSDQEDNMPVSQLIGSPLVYSDKQLNGT 668
+F I LLS + + + V++L LV +KQ +
Sbjct: 380 VFPPSA-----HIPT-ILLSL-------IWFDVIKSDVMVVVNKLHKYSLV--EKQPKES 424
Query: 669 FYEERLLLTLSNCQYICFFIFPRLDDLFIQNGLPTIKESLELSTENLVILENKLIENYIE 728
+ +++ L++ EN L ++++Y
Sbjct: 425 TI--------------------SIPSIYL---------ELKVKLENEYALHRSIVDHYNI 455
Query: 729 IKSDPLVGTIEPSM------YLGH--------------------FEW------------- 749
K+ I P + ++GH F +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 750 ------DTVIPPIDLKPYAKEIIGN----------------------IITVHAELVRIVP 781
+T+ LK Y I N I + + +L+RI
Sbjct: 516 ASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-- 570
Query: 782 SVISKVISGIVETVAEELSR 801
+ I E +++ R
Sbjct: 571 -ALMAEDEAIFEEAHKQVQR 589
Score = 66.4 bits (161), Expect = 3e-11
Identities = 88/597 (14%), Positives = 168/597 (28%), Gaps = 173/597 (28%)
Query: 82 CTIQFRGYHETIG-PLKESAVWIEEAPIQSLSWSRRSMSPS----SYQIE-DPLG----- 130
+ Q + + L+ + ++ PS Y + D L
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 131 ---LSVERED--RKIPEDDLHELFPD---------GSGDLSLENFEPTWFLLDHHHATSF 176
+V R K+ L EL P GSG +
Sbjct: 126 FAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWV------------------ 166
Query: 177 DDLRVGLSFLKRKVESQKEGQ---LSFLKSN-VSSVMEQMDTLFIFKEKFEANVKEHGLD 232
L KV+ + + + L+ N +V+E + L + +D
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL------------YQID 210
Query: 233 PTIKVEIAIKKSMTEATKLFQDVLARRERADKTRNALTVL---QRYRFL--FSLP---LS 284
P ++ Q L R ++ N L VL Q + F+L L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 285 ISNNITKNDIDAVINDYARAMNL------FGKTDV-ALFKKVLFEVESNINDLRNMLRKK 337
+ K D + ++L +V +L K L + DL R+
Sbjct: 271 TTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLP---REV 322
Query: 338 LKIMPQTLQEQKTLIRNLVNLDAGGDPGWDAIISQYEYI-----THLLESCKNEHMLLDV 392
L P+ L IR+ + WD ++++ T ++ES +
Sbjct: 323 LTTNPRRLSIIAESIRDGLAT-------WD----NWKHVNCDKLTTIIESS--------L 363
Query: 393 ENSKPKKPKHT-RSASGSHILEPAPVFVPQPILCV--EELTAIVSERFPDL--------- 440
+P + + S + P +P +L + ++ +
Sbjct: 364 NVLEPAEYRKMFDRLS---VF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 441 -WKLGQ-SYFSGELQGTVEPTNQLMFKKIILDVVALSSKSIRSSVLPHTCDSSVKTFSLI 498
K S S L+ V+ N+ + I+D + ++P D
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------YF 473
Query: 499 YKESLGSHLPTALQY-LCDLYSNLLALDL------------PTQALQIVSKLLFDLK--- 542
Y +G HL L+ + LD A + L LK
Sbjct: 474 Y-SHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 543 -------------LHTLLCLVKHCGSQIKELKHKENWQYEF-NPNKGAITQLPKQIE 585
++ +L + + K+ + + ++ + KQ++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 61.4 bits (148), Expect = 1e-09
Identities = 85/547 (15%), Positives = 166/547 (30%), Gaps = 165/547 (30%)
Query: 372 QYEY---ITHLLESCKNEHMLLDVENSKPKKPKHTRSASGSHILEPAPVFVPQPILCVEE 428
QY+Y ++ ++ + DV++ P+ IL EE
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDM------------------------PKSILSKEE 50
Query: 429 LTAIVSERFPDLWKLGQSYFSGELQGTVEPTNQLMFKKIILDVVALSSKSIRSSVLPHTC 488
+ I+ D + + L T+ + M +K + +V+ ++ K + S +
Sbjct: 51 IDHIIMS--KD--AVSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 489 DSSVKTFSLIYKESLGSHLPTALQYLCDLY-SNLLALDLPTQALQIVSKL---LFDLKLH 544
S+ T I + LY N + LQ KL L +L+
Sbjct: 104 QPSMMTRMYIEQRD-------------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 545 TLLCLVKH----CGSQIKELKHKENWQYEFNPNKGAITQLPKQIELLLSDMVQNIKTNVL 600
+ + G K + D+ + K
Sbjct: 151 KNVLI--DGVLGSG---------------------------KTW--VALDVCLSYKV--- 176
Query: 601 SKDDKDNPLFNSDVAKHEFSIEVNKLLSAVVNLLDELSSSSSDQEDNMPVSQLIGSPLVY 660
+ D +F ++ +L + LL ++ + + + D+
Sbjct: 177 -QCKMDFKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHS------------ 220
Query: 661 SDKQLNGTFYEERLLLTLSNCQY-ICFFIFPRLDDLFIQNGLPTIKESLELSTENLVILE 719
S+ +L + L L + Y C + L + +QN + LS + L+
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV---LLN--VQN--AKAWNAFNLSCKILLTTR 273
Query: 720 NKLIENYI------EIKSDPLVGTIEPSMYLGHF-EWDTVIPPIDLKPYAKEIIGNIITV 772
K + +++ I D T+ P ++ P DL
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPR------------ 320
Query: 773 HAELVRIVPSVISKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQYC 832
E++ P + +S I E++ + L+ + K C K I+ S L+
Sbjct: 321 --EVLTTNP----RRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESS-----LNVLE 367
Query: 833 TDSAKAYFSEAL-----DV-IPP--L----NATQQQRVEQILSQYQVRMKLQLLSLFQIK 880
+ F + L IP L + V +++ KL SL + +
Sbjct: 368 PAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN------KLHKYSLVEKQ 420
Query: 881 KMEHTYF 887
E T
Sbjct: 421 PKESTIS 427
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor,
leucine rich repeat, receptor ectodomain, signaling
protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B
1shy_B 1ssl_A
Length = 727
Score = 58.9 bits (141), Expect = 5e-09
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 5 PVVTGISPKEGPP--GTRVTIRGENL--GKQPNDLIGLVICGCDCLLSAEWKSPNKIIAR 60
PV+T ISPK GP GT +T+ G L G + IG C + + S + +
Sbjct: 636 PVITSISPKYGPMAGGTLLTLTGNYLNSGNSRHISIGGKTC------TLKSVSNSILECY 689
Query: 61 SGPGKGRGEIIVSTSLGGEGTCTIQFRGYHE 91
+ E V + T F Y E
Sbjct: 690 TPAQTISTEFAVKLKIDLANRETSIFS-YRE 719
Score = 38.1 bits (87), Expect = 0.014
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 1 MSPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGL-----VICGCDCLLSAEWKS 53
P + + P P GTR+TI G + G + N+ L ++ C L+ +
Sbjct: 538 QICLPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSEST 597
Query: 54 PNKIIARSGPG-KGRGEIIVSTSLGGEGTCTIQF 86
N + GP + + S G T F
Sbjct: 598 MNTLKCTVGPAMNKHFNMSIIISNGHGTTQYSTF 631
>3muj_A Transcription factor COE3; immunoglobulin like fold,
helix-loop-helix, structural genom consortium, SGC, DNA
binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Length = 138
Score = 53.9 bits (129), Expect = 8e-09
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 5 PVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSG 62
P + ISP EG G V I G+N + G ++ +E +P+ I ++
Sbjct: 6 PCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLV------WSELITPHAIRVQTP 59
Query: 63 PGKGRGEIIVSTSLGGEGTCT 83
P G + V+ S + C
Sbjct: 60 PRHIPGVVEVTLSYKSKQFCK 80
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 55.7 bits (133), Expect = 4e-08
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARS 61
S P ++ +PKEG ++ I GEN G + + + I G D ++ +
Sbjct: 15 SKPVAISDFTPKEGGAYQKLLIYGENFGTDVSK-VKVKIGGKDAIVIN--VKSTYVYCFV 71
Query: 62 GPGKGRGEIIVSTSLGGEGTCTIQFRGYH 90
G GEI ++ G T +
Sbjct: 72 PSGAFSGEIEITVGEGENAVTTTASTTFS 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-07
Identities = 98/624 (15%), Positives = 176/624 (28%), Gaps = 231/624 (37%)
Query: 268 ALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLF----------GKTDVALFK 317
+ LQ +F LP ++ + + + G+ D L
Sbjct: 29 IASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVGQFDQVL-N 85
Query: 318 KVLFEVESNI---NDLRNMLRKKLKIMPQTLQEQKTLIRN------LVN----------- 357
L E E+ ND+ + K L+ TL + K LI+N +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 358 LDA------------GG----DPGWDAIISQYE-Y---ITHLLESCKNEHMLLDVENSKP 397
A GG D ++ + Y+ Y + L++ L ++ +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--TLSELIRTTL 203
Query: 398 KKPK-HTRSASGSHIL------EPAPVFVPQPILCVEELTAIVSERFP--DLWKLGQSYF 448
K T+ G +IL P + L + +S P + +L
Sbjct: 204 DAEKVFTQ---GLNILEWLENPSNTP---DKDYLL----SIPIS--CPLIGVIQLAHYVV 251
Query: 449 SGELQGTVEPTNQLMFKKIILDVVALSSKSIRSSVLPHTCDSSVKTFSLIYKESLGSHLP 508
+ +L G P + L S+ + ++V DS ES +
Sbjct: 252 TAKLLG-FTPGE--LRS--YLKGATGHSQGLVTAVAIAETDSW---------ESFFVSVR 297
Query: 509 TALQYL------C-DLYSNLLALDLPTQALQI--------------VSKLLFDLKLHTLL 547
A+ L C + Y N LP L+ +S +L +
Sbjct: 298 KAITVLFFIGVRCYEAYPN---TSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQ 350
Query: 548 CLVKHCGSQIKELKHKENWQYEFNPNKGAITQLP--KQIELLLSDMVQNIKTNVLSKDDK 605
V + N + LP KQ+E+
Sbjct: 351 DYVN-----------------KTN------SHLPAGKQVEI------------------- 368
Query: 606 DNPLFNSD----VAKHEFSIEVNKLLSAVVNLLDELSSSSSDQEDNMPVSQ--------- 652
L N V+ S L + L + S DQ +P S+
Sbjct: 369 --SLVNGAKNLVVSGPPQS-----LYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRF 420
Query: 653 L-IGSPLVYSDKQLNGTFYEERLLLTLSNCQYICFFIFPRLDDLFI-----QNGLPTIKE 706
L + SP + L + + L + F D+ I +G
Sbjct: 421 LPVASP--FHSHLLVPA--SDLINKDLVK-NNVSF----NAKDIQIPVYDTFDG------ 465
Query: 707 SLELSTENLVILENKLIENYIE-IKSDPLVGTIEPSMYLGHFEWDTVIPP-----IDLKP 760
+L +L + E ++ I P+ +W+T +D P
Sbjct: 466 ------SDLRVLSGSISERIVDCIIRLPV-------------KWETTTQFKATHILDFGP 506
Query: 761 YAKEIIGNIITVHAEL--VRIVPS 782
+G + + + VR++ +
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVA 530
Score = 52.4 bits (125), Expect = 8e-07
Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 68/265 (25%)
Query: 657 PLVYSDKQLNGTFYEERLLLTLSNCQYICFFIFPRLDDLFIQNGLPTIKESLELSTENLV 716
PL S +G+ E LL+ ++ FFI +L + F + LP E E
Sbjct: 8 PLTLS----HGSL-EHVLLVPTAS-----FFIASQLQEQFNKI-LPEPTEGFAADDEPTT 56
Query: 717 ILENKLIE---NYIEIKSDPL-VGTIEP--SMYLGHFEWD--------TV---IPPID-- 757
E L+ Y+ +P VG + ++ L FE + + +
Sbjct: 57 PAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 758 --------LKPY--AKEIIGNIITVHAE--LVRIVPSVISKVIS-----GIVETVAEELS 800
+K Y A+ + + L R V +++++ G + EEL
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 801 RL----MSCVTKFSECGKQQAFIDMSSLKNTLSQYCTDSAKA--YFSEALDVIPPLNATQ 854
L V I S+ TLS+ + A F++ L+++ L
Sbjct: 175 DLYQTYHVLV---------GDLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 855 QQRVEQILSQYQVRMKLQLLSLFQI 879
+ L + L+ + Q+
Sbjct: 224 NTPDKDYLLSIPISCP--LIGVIQL 246
Score = 51.6 bits (123), Expect = 1e-06
Identities = 97/623 (15%), Positives = 183/623 (29%), Gaps = 213/623 (34%)
Query: 112 SWSRRSMSPSSYQIEDPLGLSVEREDRKIPEDD------LHELF----PDGSGDLSLENF 161
++S R ++ S +E L +P L E F P+ + + ++
Sbjct: 3 AYSTRPLTLSHGSLEHVL---------LVPTASFFIASQLQEQFNKILPEPTEGFAADD- 52
Query: 162 EPTWFL-LDHHHATSFDDLRVGLSFLKRKVESQKEGQL-SFLKSNVSSVMEQMDTLFIFK 219
EPT L F L ++ VE K GQ L ++ F+
Sbjct: 53 EPTTPAEL----VGKF------LGYVSSLVEPSKVGQFDQVLNLCLTE----------FE 92
Query: 220 EKF--EANVKEH----GLDPTIKVEIAIKKSMTEATKLFQ-DVLARRERADKTRNALTVL 272
+ ++ H L + K + + ++A+R K+ +AL
Sbjct: 93 NCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSAL--- 145
Query: 273 QRYRFLFSLPLSISNNITKNDIDAVINDYARAMNLF---GKTDVALFK--KVLFEV-ESN 326
AV A+ + +F G TD F+ + L++
Sbjct: 146 ---------------------FRAVGEGNAQLVAIFGGQGNTDD-YFEELRDLYQTYHVL 183
Query: 327 INDLRNMLRKKLKIMPQTLQEQKTLIRNLVNL-----DAGGDPGWDAIIS---------- 371
+ DL + L + +T + + + +N+ + P D ++S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 372 -QYEYITHLLESCKNEHMLLDVENSKPKK-PKHTRSASG--SHILEPAPV--------FV 419
Q + H + + K + P + + + A+G ++ + F
Sbjct: 244 IQ---LAHYVVTAK-------LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 420 PQPILCVEELTAI---VSERFPDLWKLGQSYFSGELQGTVE-----PTNQLMFKKIILDV 471
+ L I E +P+ S L+ ++E P+ M L +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNT-----SLPPSILEDSLENNEGVPS--PM-----LSI 341
Query: 472 VALSSKSIRSSVLPHTCDSSVKTFSLIYKESLGSHLPTALQYLCDLYSNLLALDL----- 526
L+ + ++ V SHLP Q + + L
Sbjct: 342 SNLTQEQVQDYV-----------------NKTNSHLPAGKQ---------VEISLVNGAK 375
Query: 527 ------PTQALQIVSKLLFDLKLHTLLCLVKHCGSQIKELKHKENWQYEFNPNKGAITQL 580
P Q+L +L L S+I + K + F P +
Sbjct: 376 NLVVSGPPQSLY-----GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP----VA-S 425
Query: 581 P---KQIELLLSDMVQNIKTNVLSKDDKDNPLFNSDVAKHEFSIEVNKLLSAVVNLLD-- 635
P LL I D+ K+ S + V + D
Sbjct: 426 PFHSH----LLVPASDLIN---------------KDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 636 ELSSSSSDQEDNMPVSQLIGSPL 658
+L S + + V +I P+
Sbjct: 467 DLRVLSGSISERI-VDCIIRLPV 488
Score = 44.7 bits (105), Expect = 2e-04
Identities = 82/561 (14%), Positives = 147/561 (26%), Gaps = 245/561 (43%)
Query: 474 LSSKSIRSSVLPH---TCDSSVKTFSLIY----KESLGSHLPTALQYLCDLYSNLLALDL 526
+ + S R L H V T S +E LP A D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP-------TEGFAADDE 53
Query: 527 PTQALQIVSKLLFDLKLHTLLCLVKHCGSQIKELKHKENWQY---------EFNPN--KG 575
PT ++V K L + S ++ + Q+ EF +G
Sbjct: 54 PTTPAELVGKFL------------GYVSSLVEP---SKVGQFDQVLNLCLTEFENCYLEG 98
Query: 576 -----AITQLPKQIELLLSDMVQNIKT----NVLSKDDKDNP----LFNSDVAKHEFSI- 621
+L ++ + L + IK +++K D LF + V + +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA-VGEGNAQLV 157
Query: 622 --------------E-----------VNKLLSAVVNLLDELSSSSSDQE----------- 645
E V L+ L EL ++ D E
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 646 --------------DNMPVSQ-LIG----------------SPLVYSDKQLNGT------ 668
++P+S LIG +P L G
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGATGHSQG 276
Query: 669 ---------------FYEE-RLLLTLSNCQYICFFI-------FPRLDDLFIQNGLP--T 703
F+ R +T+ FFI +P LP
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVL------FFIGVRCYEAYPNTS-------LPPSI 323
Query: 704 IKESLELSTEN-----LVI--LENKLIENYIEI--KSDPLVGTIEPSMYLG--HFEWDTV 752
+++SLE + E L I L + +++Y+ P +E S+ G + V
Sbjct: 324 LEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL----V 378
Query: 753 I--PPIDLK--------------------PYA--KEIIGNI---ITV--HAELVRIVPSV 783
+ PP L P++ K N + H
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---------- 428
Query: 784 ISKVISGIVETVAEELSRLMSCVTKFSECGKQQAFIDMSSLKNTLSQYCTDSAKAYFSEA 843
S ++ + + ++L + + ++ + Y T +
Sbjct: 429 -SHLLVPASDLINKDLVK-------------NNVSFNAKDIQ--IPVYDTFDGSDLRVLS 472
Query: 844 LDVIPPLNATQQQRVEQILSQ 864
+ + V+ I+
Sbjct: 473 GSISERI-------VDCIIRL 486
Score = 36.2 bits (83), Expect = 0.059
Identities = 52/292 (17%), Positives = 97/292 (33%), Gaps = 74/292 (25%)
Query: 611 NSDVAKHEFSIEVNKLLSAVVNLLDELSSSSSDQEDNMPVSQLI--GSPLVYSDKQLNGT 668
S A+ ++ A + D S D N PV+ I G K++
Sbjct: 1638 TSKAAQDVWN-------RADNHFKDTYGFSILDIVINNPVNLTIHFGGE---KGKRIREN 1687
Query: 669 FYEERLLLTLSNCQYICFFIFPRLDDL---FIQNGLPTIKESLELSTEN----LVILENK 721
Y + T+ + + IF +++ + K L T+ L ++E
Sbjct: 1688 -YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-E--KGLLSA-TQFTQPALTLMEKA 1742
Query: 722 LIENYIEIKSDPLVGTI-EPSMYLGH----------------FEWDTV------------ 752
E ++KS G I + + GH E V
Sbjct: 1743 AFE---DLKSK---GLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVVFYRGMTMQV 1795
Query: 753 IPPIDLKPYAKEIIGNIITVHAELVRIVPSVISKVISGIVETVAEELSRLMSCVTKFSEC 812
P D + G +I ++ R+ S + + +VE V + L+ V ++
Sbjct: 1796 AVPRD--ELGRSNYG-MIAINPG--RVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVE 1849
Query: 813 GKQQAFI--DMSSLKNTLSQYCTDSAKAYFSEALDVIPPLNATQQQRVEQIL 862
QQ D+ +L +T++ + K + +D+I + + VE L
Sbjct: 1850 N-QQYVAAGDLRAL-DTVTN-VLNFIKL---QKIDIIELQKSLSLEEVEGHL 1895
Score = 32.3 bits (73), Expect = 0.89
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 4 PPVVTGISP-----KEGPPGTRVTIRGENLGKQPNDLIG 37
P +G+ K+G G RV I L P+D G
Sbjct: 506 PGGASGLGVLTHRNKDGT-GVRV-IVAGTLDINPDDDYG 542
Score = 31.9 bits (72), Expect = 1.4
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 26/75 (34%)
Query: 22 TIRGENLGKQPNDLIGLVICGCDCLLS--AEWK-----SPNKIIARSGPGK--------- 65
T G +L + + DC++ +W+ I+ GPG
Sbjct: 462 TFDGSDLRVLSGSISERI---VDCIIRLPVKWETTTQFKATHILD-FGPGGASGLGVLTH 517
Query: 66 ----GRG--EIIVST 74
G G I+ T
Sbjct: 518 RNKDGTGVRVIVAGT 532
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold,
TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A
{Mus musculus} PDB: 3n50_A
Length = 402
Score = 51.1 bits (121), Expect = 1e-06
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 2 SPPPVVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIA 59
+ P + ISP EG G V I G+N + G ++ +E +P+ I
Sbjct: 229 AATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLV------WSELITPHAIRV 282
Query: 60 RSGPGKGRGEIIVSTSLGGEGTCT 83
++ P G + V+ S + C
Sbjct: 283 QTPPRHIPGVVEVTLSYKSKQFCK 306
>3orj_A Sugar-binding protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; 2.16A {Bacteroides ovatus}
Length = 439
Score = 50.8 bits (120), Expect = 1e-06
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIAR-- 60
P +T IS G + + G L + + + + ++S +
Sbjct: 112 AAPSITKISNCMPNVGEPIIVYGSGLTEIAKVVFPGNVVVTEGIISD--LDGEYFMVDMP 169
Query: 61 SGPGKGRGEIIVSTSLGGEGTCTIQFR 87
+G + G I V S G F
Sbjct: 170 AGVSEEGGSIFVEGS-NGGAYSPAYFN 195
Score = 33.5 bits (75), Expect = 0.32
Identities = 17/99 (17%), Positives = 24/99 (24%), Gaps = 13/99 (13%)
Query: 3 PPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIAR-- 60
V G + I GE I G +C + + S +
Sbjct: 23 AKSNVPDRLVDFARLGQLIRIEGEGFNGLKKVYIN----GYNCYFNPVFVSNKSFLVSVN 78
Query: 61 ------SGPGKGRGEIIVSTSLGGEGTCTIQFRGYHETI 93
R I + GGE Q R +I
Sbjct: 79 SKVPTTEADENVRNTIRLVKD-GGEYVYDFQIRAAAPSI 116
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 44.3 bits (104), Expect = 1e-04
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKI--IA 59
+ P V++ SPKEG GTR+ + GEN G + I + I G D + + +
Sbjct: 15 NKPVVISEFSPKEGGLGTRMLLYGENFGSDIS-KIKVTIGGQDSKVVGA--KGKSLYCVV 71
Query: 60 RSGPGKGRGEIIVSTSLGGE 79
+ G ++ + G E
Sbjct: 72 PAKAYDGDIKLSILNDEGEE 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 3e-04
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 21/48 (43%)
Query: 814 KQQAFIDMSSLKNTLSQYCTDSAKAYFSEALDVIPPL--NATQQQRVE 859
KQ + L+ +L Y DSA P L AT +E
Sbjct: 19 KQA----LKKLQASLKLYADDSA-----------PALAIKAT----ME 47
Score = 31.1 bits (69), Expect = 0.84
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 220 EKFEANVKEHGLD--PTIKVEIAIKKSM 245
+K +A++K + D P +AIK +M
Sbjct: 23 KKLQASLKLYADDSAPA----LAIKATM 46
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE;
1.70A {Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 39.9 bits (93), Expect = 0.003
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDL 35
+ P V P EG +V ++G N G + +
Sbjct: 15 NQPVTVESFMPVEGKLREKVIVKGSNFGTDKSKV 48
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 31.8 bits (71), Expect = 1.1
Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 713 ENLVILENKLIENYIEIKSDPLVGTIEPSM--YLGHFEWDTVIPPIDLKPYA-----KEI 765
E + + + ++ ++ Y W T+ +D E+
Sbjct: 506 NVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAEL 565
Query: 766 IGNIITVHAELVRIVPSVISKVIS-GIVETVAEELSRLMS----CVTKFSECGKQQAFID 820
+ +I + + ++ I IS + + + + + KF++ G Q D
Sbjct: 566 VNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHD 625
Query: 821 MSSLKNTLSQYCTDSAKAY--FSEAL 844
SL + LS + E +
Sbjct: 626 FKSLSSILSLPSHATNYKCMSLHELV 651
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 30.7 bits (70), Expect = 1.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 604 DKDNPLFNSDVAKHEFSIEVNKLLSAVVN--------LLDELSSSSSD 643
D P+ +V F E+ +L+S ++N L EL S+SSD
Sbjct: 35 GSDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 82
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 30.2 bits (69), Expect = 2.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 606 DNPLFNSDVAKHEFSIEVNKLLSAVVN--------LLDELSSSSSD 643
D P+ +V F E+ +L+S ++N L EL S+SSD
Sbjct: 1 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 46
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 30.4 bits (68), Expect = 3.0
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 9/124 (7%)
Query: 653 LIGSPLVYSDKQLNGTFYEERLLLTL-SNCQYICFFIFPR-----LDDLFIQN-GLPTIK 705
LI P G+ + TL ++ F P LD L +++ L +
Sbjct: 13 LISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVD 72
Query: 706 ESLELSTENLVILENKLIENYIEIKSDPLVGTIEPSMYLGHFEWDTVIPPIDLKPYAKEI 765
+ S ++ + L E + + YL +F+W T +D K++
Sbjct: 73 NQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKS--IKDL 130
Query: 766 IGNI 769
I I
Sbjct: 131 ITLI 134
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 29.9 bits (68), Expect = 3.7
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 321 FEVESNINDLRNMLRKKLKIMPQ----TLQEQKTLI-----RNLVNLDAGGDP 364
E ++ LR ++ Q + K ++ R L+NL P
Sbjct: 309 SNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGR-LLNLSCSTVP 360
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 29.5 bits (67), Expect = 4.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 605 KDNPLFNSDVAKHEFSIEVNKLLSAVVN--------LLDELSSSSSD 643
+D P+ +V F E+ +L+S ++N L EL S+SSD
Sbjct: 28 QDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 74
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 29.1 bits (66), Expect = 6.4
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 611 NSDVAKHEFSIEVNKLLSAVVN--------LLDELSSSSSD 643
+ H++ EV +L+ +VN L EL S+++D
Sbjct: 20 TESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAAD 60
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 29.1 bits (64), Expect = 8.2
Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 22/223 (9%)
Query: 144 DLHELFPDGSGDLSLENFEPTWFLLDHHHATSFDDLRVGLSFLKRKVES---QKEGQLSF 200
D+HEL GSG L E +FD L + V + E S
Sbjct: 458 DIHELLGHGSGKLLTEF----------TDGFNFDKENPPLGLDGKPVSTYYKVGETWGSK 507
Query: 201 LKSNVSSVME-QMDTLFIFKEKFEANVKEHGLDPTIKVEIAIKKS-MTEATKLFQDVLAR 258
E + + + +F + + G + I + A +
Sbjct: 508 FGQLAGPFEECRAEVIAMFLLTNKKILDIFGFHDVESQDKVIYAGYLQMARAGLLALEYW 567
Query: 259 RERADKTRNALTVLQRYRFLFSLPLSISNNI-----TKNDIDAVINDYARAMNLFGKTDV 313
+ K + + S N + D I + G V
Sbjct: 568 NPKTGKWGQPHMQARFSIMKTFMKHSTDKNFLKLEMNSTNDDFAIKLDKSLIKTAGHECV 627
Query: 314 ALFKKVLFEVES--NINDLRNMLRKKLKIMPQTLQEQKTLIRN 354
+ K L + ++ + + P + ++
Sbjct: 628 KDYLKHLHVYKCSGDVEQGSKYFIDRSTVTPDLASLRDIVLSK 670
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 28.7 bits (64), Expect = 9.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 266 RNALTVLQRYRFLFSLPLSISNNITKNDIDAVINDYARAM 305
R +L +L+ L L S+ I K D VI+ R +
Sbjct: 231 RVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,147,920
Number of extensions: 801909
Number of successful extensions: 1699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 59
Length of query: 887
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 785
Effective length of database: 3,853,851
Effective search space: 3025273035
Effective search space used: 3025273035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)