RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10164
(887 letters)
>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5,
Ral-binding domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 92
Score = 95.6 bits (237), Expect = 2e-24
Identities = 53/87 (60%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARS 61
PP+VTGISP EG P T+VTIRGENLG P DLIGL ICG +CLL+AEW S +KI+ R
Sbjct: 2 RQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRV 61
Query: 62 GPGK-GRGEIIVSTSLGGEGTCTIQFR 87
G K +G+IIV+T GG GT T+ F+
Sbjct: 62 GQAKNDKGDIIVTTKSGGRGTSTVSFK 88
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic"
alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain
D {Bacillus stearothermophilus [TaxId: 1422]}
Length = 81
Score = 62.7 bits (152), Expect = 7e-13
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 2 SPPPVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARS 61
+ P + ++P G PG VTI G+ G + G + + + N+I
Sbjct: 1 ASAPQIGSVAPNMGIPGNVVTIDGKGFG---TTQGTVTFGGVTA--TVKSWTSNRIEVYV 55
Query: 62 GPGKGRGEIIVSTSLGGEGTCTIQF 86
G V + GG + +
Sbjct: 56 PNMAA-GLTDVKVTAGGVSSNLYSY 79
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin
glycanotransferase, domain D {Thermoanaerobacterium
[TaxId: 28895]}
Length = 83
Score = 58.8 bits (142), Expect = 2e-11
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 5 PVVTGISPKEGPPGTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGPG 64
P++ + P G +TI G G ++ + ++ +
Sbjct: 4 PLIGHVGPTMTKAGQTITIDGRGFG---TTSGQVLFGSTAG--TIVSWDDTEVKVKVPSV 58
Query: 65 -KGRGEIIVSTSLGGEGTCTIQFR 87
G+ I + TS G
Sbjct: 59 TPGKYNISLKTSSGATSNTYNNIN 82
>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin
glycanotransferase, domain D {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 83
Score = 58.1 bits (140), Expect = 3e-11
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 5 PVVTGISPKEGPPGTRVTIRGENLGKQPND-LIGLVICGCDCLLSAEWKSPNKIIARSGP 63
P++ + P G G +VTI GE G G + S N+I+
Sbjct: 4 PIIGHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAA------NVVSWSNNQIVVAVPN 57
Query: 64 GK-GRGEIIVSTSLGGEGTCTIQFR 87
G+ I V +S G F
Sbjct: 58 VSPGKYNITVQSSSGQTSAAYDNFE 82
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin
glycanotransferase, domain D {Bacillus circulans,
different strains [TaxId: 1397]}
Length = 87
Score = 55.4 bits (133), Expect = 2e-10
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 5 PVVTGISPKEGPPGTRVTIRGENLGKQPND-LIGLVICGCDCLLSAEWKSPNKIIARSGP 63
P + + P PG +TI G G G + S +I +
Sbjct: 3 PTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSW---EDTQIKVKIPA 59
Query: 64 GK-GRGEIIVSTSLGGEGTCTIQF 86
G I V+ + G F
Sbjct: 60 VAGGNYNIKVANAAGTASNVYDNF 83
>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription
activator 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 32.2 bits (72), Expect = 0.037
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 7/80 (8%)
Query: 6 VVTGISPKEGPP--GTRVTIRGENLGKQPNDLIGLVICGCDCLLSAEWKSPNKIIARSGP 63
+VT SP+ P G +V I G N P +
Sbjct: 1 MVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPA----SLIQPGVLRCYCPA 56
Query: 64 GKGRGEIIVSTSLGGEGTCT 83
G + + + +
Sbjct: 57 HD-TGLVTLQVAFNNQIISN 75
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
(NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 29.1 bits (65), Expect = 0.73
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 5 PVVTGISPKEGPP--GTRVTIRGENLGK 30
P+V G ++ + G+N
Sbjct: 3 PMVERQDTDSCLVYGGQQMILTGQNFTS 30
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 28.7 bits (64), Expect = 3.0
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 311 TDVALFKKVLFEVESNINDLRNMLRKKLKIM-----PQTLQEQKTLIRNLVNLD 359
FE + L+ L + + M Q EQ+ LV +
Sbjct: 170 VKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFN 223
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest
virus [TaxId: 11033]}
Length = 90
Score = 26.8 bits (59), Expect = 3.3
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 79 EGTCTIQFRGYHETIGPLKESAVWIEEAPIQSLSWSRRSMSPS 121
G C++ H + L+E+ ++ A +L +S S SPS
Sbjct: 33 NGDCSVH---SHSNVATLQEATAKVKTAGKVTLHFSTASASPS 72
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 26.5 bits (58), Expect = 4.4
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 133 VEREDRKIPEDDLHELF----PDGSGDLSLENFEPTWFLLDHHHATSFDDLRVGLSFLKR 188
++ + + E++L +LF + G + LE + AT + L +
Sbjct: 5 MKDDSKGKTEEELSDLFRMFDKNADGYIDLEELK------IMLQATGETITEDDIEELMK 58
Query: 189 KVESQKEGQLSF 200
+ +G++ +
Sbjct: 59 DGDKNNDGRIDY 70
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 27.7 bits (61), Expect = 4.8
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 616 KHEFSIEVNKLLSAVVN--------LLDELSSSSSDQEDNMPVSQLIGSPLVYSDKQLNG 667
K F EVN+++ ++N L EL S++SD D + + L + +++L
Sbjct: 2 KFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTV 61
Query: 668 TFYEERLLLTL 678
++ L
Sbjct: 62 KIKCDKEKNLL 72
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 27.7 bits (61), Expect = 4.8
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 616 KHEFSIEVNKLLSAVVN--------LLDELSSSSSDQEDNMPVSQLIGSPLVYSDKQLNG 667
EF E+ +L+S ++N L EL S++SD D + L + ++ L
Sbjct: 4 TFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFI 63
Query: 668 TFYE 671
Sbjct: 64 RITP 67
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 27.4 bits (60), Expect = 6.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 614 VAKHEFSIEVNKLLSAVVN--------LLDELSSSSSDQEDNMPVSQLIGSPLVYSDKQL 665
V F E+ +L+S ++N L EL S+SSD D + L + S K+L
Sbjct: 1 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKEL 60
>d2bhma1 d.17.4.26 (A:97-235) Type IV secretion system protein VirB8
{Brucella melitensis [TaxId: 29459]}
Length = 139
Score = 26.8 bits (59), Expect = 6.1
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 47 LSAEWKSPNKIIARSGPGKGRGEIIVSTSLGGEGTCTIQFRGYHETIGPLKESAVWIEEA 106
+++++ + + G IVS G+G T++F +T E+
Sbjct: 45 YASQFQGDKALDKQYGSNVRTSVTIVSIVPNGKGIGTVRFA---KTTKRTNETGDGETTH 101
Query: 107 PIQSLSWSRRSMSPSSYQ--IEDPLGLSV 133
I ++ + + S S + +PLG +V
Sbjct: 102 WIATIGYQYVNPSLMSESARLTNPLGFNV 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,204,257
Number of extensions: 153312
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 18
Length of query: 887
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 794
Effective length of database: 1,130,706
Effective search space: 897780564
Effective search space used: 897780564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)