BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10165
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KID9|RT05_BOVIN 28S ribosomal protein S5, mitochondrial OS=Bos taurus GN=MRPS5 PE=1
SV=1
Length = 430
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 164/302 (54%), Gaps = 44/302 (14%)
Query: 6 QGWIWNLGKINIQWPGLSAPVIRGREL--VQQTRLPPDPDREAKLIALRDKQFQGKYRKT 63
+G I G+ WPGL+AP+++ + + Q EA ++ R+ ++ K +
Sbjct: 128 RGQIIGEGRRGFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQRE-EWDRKRKMK 186
Query: 64 PPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLN 123
ERGWSG GG SLGPPDP GP
Sbjct: 187 VKRERGWSGNSWGGISLGPPDP---------------------------GPNG------- 212
Query: 124 RGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGR 183
+T+D FDTRILE + VF M GR R+V LV GNG+G AGFA+GK+ E
Sbjct: 213 -------ETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGRGAAGFAIGKATERA 265
Query: 184 ASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICK 243
+ R AKNRA L Y++RY+DHT+ HD F +T I ++K+P G GL CHR I IC+
Sbjct: 266 DAFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICR 325
Query: 244 AVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVA 303
+GIKD+ AKV GS N ++ + F GL +Q++HQQLA+++ LH+VEF EE P +VA
Sbjct: 326 LIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKKSLHVVEFREECGPLPIVVA 385
Query: 304 SP 305
SP
Sbjct: 386 SP 387
>sp|Q5REJ1|RT05_PONAB 28S ribosomal protein S5, mitochondrial OS=Pongo abelii GN=MRPS5
PE=2 SV=1
Length = 429
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 166/302 (54%), Gaps = 44/302 (14%)
Query: 6 QGWIWNLGKINIQWPGLSAPVIRG--RELVQQTRLPPDPDREAKLIALRDKQFQGKYRKT 63
+G I G+ WPGL+ PV++ + + Q EA +I R+ +++ K +
Sbjct: 128 RGQIIGEGRYGFLWPGLNVPVMKNGTVQTIAQRSKEEQEKVEADVIQQRE-EWERKKKMK 186
Query: 64 PPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLN 123
ERGWSG GG SLGPPDP GP
Sbjct: 187 VKRERGWSGNSWGGLSLGPPDP---------------------------GPSG------- 212
Query: 124 RGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGR 183
+T++ FDTRILE + VF M GR +++ LV GNG+G AGFA+GK+ +
Sbjct: 213 -------ETYEDFDTRILEVRNVFTMTAKEGRRKSIRVLVAVGNGKGAAGFAIGKATDRM 265
Query: 184 ASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICK 243
+ R AKNRA L Y++RY+DHT+ HD +F +T I ++K+P+G GL CHR I IC+
Sbjct: 266 DAFRKAKNRAVHHLYYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICR 325
Query: 244 AVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVA 303
+GIKD+ AKV GSTN ++ + F GL +Q++HQQLA+++ LH+VE EE P +VA
Sbjct: 326 LIGIKDMYAKVSGSTNMLSLTQGLFHGLSRQETHQQLADKKGLHVVEIREECGPLPIVVA 385
Query: 304 SP 305
SP
Sbjct: 386 SP 387
>sp|P82675|RT05_HUMAN 28S ribosomal protein S5, mitochondrial OS=Homo sapiens GN=MRPS5
PE=1 SV=2
Length = 430
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 44/302 (14%)
Query: 6 QGWIWNLGKINIQWPGLSAPVIR--GRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKT 63
+G I G+ WPGL+ P+++ + + Q EA +I R+ ++ K +
Sbjct: 128 RGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQRE-EWDRKKKMK 186
Query: 64 PPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLN 123
ERGWSG GG SLGPPDP GP
Sbjct: 187 VKRERGWSGNSWGGISLGPPDP---------------------------GPCG------- 212
Query: 124 RGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGR 183
+T++ FDTRILE + VF M GR +++ LV GNG+G AGF++GK+ +
Sbjct: 213 -------ETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRM 265
Query: 184 ASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICK 243
+ R AKNRA L Y++RY+DHT+ HD +F +T I ++K+P+G GL CHR I IC+
Sbjct: 266 DAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICR 325
Query: 244 AVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVA 303
+GIKD+ AKV GS N ++ + F GL +Q++HQQLA+++ LH+VE EE P +VA
Sbjct: 326 LIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVA 385
Query: 304 SP 305
SP
Sbjct: 386 SP 387
>sp|Q99N87|RT05_MOUSE 28S ribosomal protein S5, mitochondrial OS=Mus musculus GN=Mrps5
PE=2 SV=1
Length = 432
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 161/302 (53%), Gaps = 44/302 (14%)
Query: 6 QGWIWNLGKINIQWPGLSAPVIRGREL--VQQTRLPPDPDREAKLIALRDKQFQGKYRKT 63
+G I G+ WPGL+ P+I+ + + Q EA ++ R+ ++ K +
Sbjct: 130 RGQIIGEGRSGFLWPGLNVPLIKSGVVQNIGQRSKEEQQKVEATMVEQRE-EWDRKRKIK 188
Query: 64 PPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLN 123
ERGWSG GG S+GPPDP GP
Sbjct: 189 VKRERGWSGNTWGGVSIGPPDP---------------------------GPNG------- 214
Query: 124 RGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGR 183
+T++ FDTRILE + VF M GR ++V LV GNG G AGFA+GK+ +
Sbjct: 215 -------ETYEDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAIGKAADRG 267
Query: 184 ASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICK 243
+ R AKNRA L Y++RY+ HT+ HD +F +T+I ++K+P G GL CHR I IC+
Sbjct: 268 DAFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICR 327
Query: 244 AVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVA 303
+GIKD+ A+V GS N + + F GL +Q++HQ LA+++ LH+VEF EE P +VA
Sbjct: 328 LIGIKDMYARVTGSMNMLNLTRGLFHGLARQETHQHLADKKGLHVVEFREECGPLPIVVA 387
Query: 304 SP 305
SP
Sbjct: 388 SP 389
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 71 SGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIG 129
S G G+ P + TA+E+W G + AG ++GRG+ K +DLNRGQIIG
Sbjct: 77 SPGNWTGQQCRPYSFFTKLTAEELWKGALAETGAGARKGRGKRTKKKKRKDLNRGQIIG 135
>sp|Q93425|RT05_CAEEL Putative 28S ribosomal protein S5, mitochondrial OS=Caenorhabditis
elegans GN=mrps-5 PE=3 SV=2
Length = 418
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 160/305 (52%), Gaps = 57/305 (18%)
Query: 15 INIQWPGLSAPVIRGRELVQQTRLP-----PDPDREA-----KLIALRDKQFQGKYR-KT 63
+ I++ GL+AP IR RE Q + D R++ K++ RD + + R K
Sbjct: 45 MKIEFAGLNAP-IRMRETENQNLMSIAEQTEDEIRDSMGGTKKILEERDTGKKKRNREKL 103
Query: 64 PPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLN 123
P+ERG+SG +L G+ LG P P+ GV+
Sbjct: 104 HPMERGFSGTQLVGQKLGAPPPLD------------GVN--------------------- 130
Query: 124 RGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGR 183
FD F+T LE K M GR T+S LVVTGNG+GLAG+A+GK+ R
Sbjct: 131 ---------FDDFETYCLEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHR 181
Query: 184 AS--MRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEI 241
+ + N A +KL +V+ ++ T+ DFY + T++F +++P G GL CH + +I
Sbjct: 182 TTTAIINGMGMASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKI 241
Query: 242 CKAVGIKDIRAKVEGST-NPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPT 300
C+A+GIKDI KVEGST N A+ AF GL+ Q++HQQLAE + LH+VE S P
Sbjct: 242 CEAIGIKDIYVKVEGSTKNYLALTHAFVTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQ 301
Query: 301 IVASP 305
IVASP
Sbjct: 302 IVASP 306
>sp|A8Y3Q1|RT05_CAEBR Putative 28S ribosomal protein S5, mitochondrial OS=Caenorhabditis
briggsae GN=mrps-5 PE=3 SV=3
Length = 415
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 157/301 (52%), Gaps = 52/301 (17%)
Query: 15 INIQWPGLSAPV-IRGRELVQQTRLPPDPDREA-----KLIALRDKQFQGKYR-KTPPLE 67
+ +++ GL+AP+ + L+ D R+ K++ RD + + R K P+E
Sbjct: 45 MKVEFAGLNAPMRLNDESLMTIAEQTEDEIRDLMGGTKKILEERDTGKKKRNREKLHPME 104
Query: 68 RGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQI 127
RG+SG +L G+ LG P PV GV+
Sbjct: 105 RGFSGTQLVGQKLGAPPPVD------------GVN------------------------- 127
Query: 128 IGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRAS-- 185
FD F+T LE K M GR T+S LVVTGNG+GLAG+A+GK+ R +
Sbjct: 128 -----FDDFETYCLEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHRTTTA 182
Query: 186 MRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAV 245
+ N A +K+ +V+ ++ T+ DFY + T++F +++P G GL CH + +IC+A+
Sbjct: 183 IINGIGMASRKIFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAI 242
Query: 246 GIKDIRAKVEGST-NPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVAS 304
GIKDI KVEGST N A+ AF GL+ Q++HQQLAE + LH+VE S P IVAS
Sbjct: 243 GIKDIYVKVEGSTKNYLALTHAFVTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQIVAS 302
Query: 305 P 305
P
Sbjct: 303 P 303
>sp|B8G6Q8|RS5_CHLAD 30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=rpsE PE=3 SV=1
Length = 179
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 128 IGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMR 187
I DT + D R++ V + K GR + ST+VV G+G+G G +GK+ E ++R
Sbjct: 6 INPDTLE-LDERVVLINRVSKVVKG-GRRFSFSTVVVVGDGKGHVGIGMGKAAEVPDAIR 63
Query: 188 NAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGI 247
A + LI V T+ H+ T+F TK+ + GTG+I R ++ + +A GI
Sbjct: 64 KGAEAAKRNLIRVPLVHS-TIPHEIVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGI 122
Query: 248 KDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQL 286
KD+ +KV GS NP +VKA F L + S Q++A + +
Sbjct: 123 KDLLSKVYGSNNPVNVVKATFKALSEMTSLQEMARRRDM 161
>sp|Q10234|RT05_SCHPO Probable 37S ribosomal protein S5, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrps5 PE=1 SV=1
Length = 387
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
G+ ++ L V GN G+AGF GK+ + + + RA + ++Y+ RY TV +
Sbjct: 242 GKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPRYDKRTVYGVIH 301
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+F ++ + +P G GL C+ I+ EIC+ GIKDI ++ GS N VKA F L
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGSKNGMNTVKAMFEALQS 361
Query: 274 QKSHQQLAEEQQLHLVEFSEE 294
Q+ + +A E+ V+ E
Sbjct: 362 QRLPEDIAMERGQKFVDVQRE 382
>sp|B5ZB57|RS5_UREU1 30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10
(strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1
Length = 203
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 132 TFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKN 191
T F+ R+++ K + K GR S LVV G+ G GF +GKS+E +++ A
Sbjct: 45 TTSNFEERVVKIKRISKTTK-GGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIK 103
Query: 192 RAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIR 251
A LI V++ K ++ HD + G K+ + PEGTG+I ++ + + G DI
Sbjct: 104 NANNNLIKVKQTKKGSIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIY 163
Query: 252 AKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEF 291
K G+ P +++A GL+QQ + Q++A + L E
Sbjct: 164 TKSRGANAPMNVIRATINGLLQQLTPQEIARLRDKSLKEL 203
>sp|B9LJE9|RS5_CHLSY 30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=rpsE PE=3 SV=1
Length = 178
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
+ R+++ V + K GR + ST+VV G+G+G G +GK+ E ++R A +
Sbjct: 13 LEERVVQINRVSKVVKG-GRRFSFSTVVVVGDGKGHVGIGMGKAAEVPDAIRKGAEAAKR 71
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
LI V TV H+ T+F TK+ + GTG+I R ++ + +A GIKD+ +KV
Sbjct: 72 NLIRVP-LVHATVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVY 130
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSE 293
GS NP +VKA F L + S ++A + + E E
Sbjct: 131 GSNNPVNVVKATFKALSEMTSLHEMASRRDMTPQELME 168
>sp|A9WH83|RS5_CHLAA 30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rpsE PE=3 SV=1
Length = 178
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
+ R+++ V + K GR + ST+VV G+G+G G +GK+ E ++R A +
Sbjct: 13 LEERVVQINRVSKVVKG-GRRFSFSTVVVVGDGKGHVGIGMGKAAEVPDAIRKGAEAAKR 71
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
LI V TV H+ T+F TK+ + GTG+I R ++ + +A GIKD+ +KV
Sbjct: 72 NLIRVP-LVHATVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVY 130
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSE 293
GS NP +VKA F L + S ++A + + E E
Sbjct: 131 GSNNPVNVVKATFKALSEMTSLHEMASRRDMTPQELME 168
>sp|Q9PQP3|RS5_UREPA 30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain
ATCC 700970) GN=rpsE PE=3 SV=1
Length = 203
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 132 TFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKN 191
T F+ R+++ K + K GR S LVV G+ G GF +GKS+E +++ A
Sbjct: 45 TTSNFEERVVKIKRISKTTK-GGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIK 103
Query: 192 RAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIR 251
A LI V++ K ++ HD + G K+ + PEGTG+I ++ + + G DI
Sbjct: 104 NANNNLIKVKQTKKGSIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIY 163
Query: 252 AKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEF 291
K G+ P +++A GL+QQ + +++A + L E
Sbjct: 164 TKSRGANAPMNVIRATINGLLQQLTPKEIARLRDKSLREI 203
>sp|B1AIN7|RS5_UREP2 30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain
ATCC 27815 / 27 / NCTC 11736) GN=rpsE PE=3 SV=1
Length = 203
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 132 TFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKN 191
T F+ R+++ K + K GR S LVV G+ G GF +GKS+E +++ A
Sbjct: 45 TTSNFEERVVKIKRISKTTK-GGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIK 103
Query: 192 RAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIR 251
A LI V++ K ++ HD + G K+ + PEGTG+I ++ + + G DI
Sbjct: 104 NANNNLIKVKQTKKGSIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIY 163
Query: 252 AKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEF 291
K G+ P +++A GL+QQ + +++A + L E
Sbjct: 164 TKSRGANAPMNVIRATINGLLQQLTPKEIARLRDKSLREI 203
>sp|Q28UT7|RS5_JANSC 30S ribosomal protein S5 OS=Jannaschia sp. (strain CCS1) GN=rpsE
PE=3 SV=1
Length = 197
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
F R++ V K R+ + LVV G+ +G GF GK+ E ++R A +A +
Sbjct: 22 FADRLVAINRVSKTVKGGKRF-GFAALVVVGDQRGRVGFGKGKAKEVPEAIRKATEQAKR 80
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
+LI V + T+ HD G K+ + PEGTG+I ++ + + +G+KD+ +K
Sbjct: 81 QLIRVPLKEGRTLHHDVKGHHGAGKVVMRTAPEGTGIIAGGPMRAVFEMLGVKDVVSKST 140
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTI 301
GS NP +++A GL + S +Q+A + + + + D++P I
Sbjct: 141 GSQNPYNMIRATLDGLRNESSPRQVASRRGKKVADILPKRDDHPQI 186
>sp|O67563|RS5_AQUAE 30S ribosomal protein S5 OS=Aquifex aeolicus (strain VF5) GN=rpsE
PE=3 SV=1
Length = 208
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + STLVV G+ +G GF GK+ E ++ +A + +I V D TV HD
Sbjct: 45 GRRFSFSTLVVVGDRKGHVGFGHGKAKEVTLAIAKGIEKAKKNVIRVP-IVDGTVPHDVI 103
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG TKI V GTG++ + + + G D+ K+ GSTNP +V+A F L+Q
Sbjct: 104 GTFGATKIIVLPARRGTGVVAGGAAKPVFELAGYTDVLTKIIGSTNPDNVVRAVFDALLQ 163
Query: 274 QKSHQQLAEEQQLHLVEFSEENDNY 298
K+ +Q+AEE+ L + E Y
Sbjct: 164 LKTPEQIAEERGLPVEEILRRYRRY 188
>sp|Q1GK12|RS5_RUEST 30S ribosomal protein S5 OS=Ruegeria sp. (strain TM1040) GN=rpsE
PE=3 SV=1
Length = 187
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 1/165 (0%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
F R++ V K R+ + LVV G+ +G GF GK+ E ++R A +A +
Sbjct: 20 FADRLVAINRVSKTVKGGKRF-GFAALVVVGDQKGRVGFGKGKAKEVPEAIRKATEQAKR 78
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
++I V + T+ HD Y + G K+ + PEGTG+I ++ + + +GIKD+ +K
Sbjct: 79 QMIRVPLKEGRTLHHDMYGRHGAGKVVMRTAPEGTGIIAGGPMRAVFEMLGIKDVVSKSV 138
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPT 300
GS NP +++A GL +++S + +A+ + + + + D P
Sbjct: 139 GSQNPYNMIRATIDGLKKEQSPRSVAQRRGKKVADILPKRDEAPA 183
>sp|A4IZR7|RS5_FRATW 30S ribosomal protein S5 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVM 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|Q5NHV1|RS5_FRATT 30S ribosomal protein S5 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVM 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|Q0BNR0|RS5_FRATO 30S ribosomal protein S5 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVM 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|A0Q4K0|RS5_FRATN 30S ribosomal protein S5 OS=Francisella tularensis subsp. novicida
(strain U112) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVM 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|A7N9U2|RS5_FRATF 30S ribosomal protein S5 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVM 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|Q14JA3|RS5_FRAT1 30S ribosomal protein S5 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVM 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|Q749A4|RS5_GEOSL 30S ribosomal protein S5 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpsE PE=3 SV=1
Length = 162
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 71/127 (55%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S LVV G+G G G+ LGK+ E ++R +A + LI V + HT+ ++
Sbjct: 28 GRRFSFSALVVVGDGNGCVGYGLGKANEVPEAIRKGVEQAKKNLIKVPIVEGHTIPYEVL 87
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG ++ ++ GTG+I + + +A G+ ++ +K GS NP +VKA F GL Q
Sbjct: 88 GHFGAGRVLIKPASAGTGVIAGGAARAVFEAAGLHNVLSKCLGSNNPHNVVKAAFNGLAQ 147
Query: 274 QKSHQQL 280
+S +++
Sbjct: 148 LRSPEEI 154
>sp|Q2A5F3|RS5_FRATH 30S ribosomal protein S5 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=rpsE PE=3 SV=1
Length = 166
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L V G+G+G G GKS E A+++ A A + ++ V D T+ +
Sbjct: 28 GRIMSFAALTVVGDGKGRIGVGRGKSREVPAAIQKAMENAKKNMVSVNLNND-TLWYPVV 86
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G +K+F++ GTG+I ++ + +AVG+ ++ AK GSTNP +V+A GL +
Sbjct: 87 SNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAK 146
Query: 274 QKSHQQLAEEQQLHLVEF 291
KS ++AE++ L + E
Sbjct: 147 IKSPDEIAEKRGLSVEEI 164
>sp|Q4FLN5|RS5_PELUB 30S ribosomal protein S5 OS=Pelagibacter ubique (strain HTCC1062)
GN=rpsE PE=3 SV=1
Length = 170
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR S LVV GN G G A K+ + +++ A A + LI+V + T+ HD Y
Sbjct: 28 GRRFGFSALVVVGNQAGKIGVAHAKAKQVPDAIKKANETARRVLIHVPLREGRTIHHDVY 87
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+ G KI + P+GTG+I ++ +C+ +GIKDI AK G++NP +++A L +
Sbjct: 88 GKDGAGKIILRSAPKGTGIIAGGPVRAVCEVLGIKDIVAKSMGTSNPHNMIRATMKALSK 147
Query: 274 QKSHQQLA 281
Q S + +A
Sbjct: 148 QNSPKHIA 155
>sp|A1ALV8|RS5_PELPD 30S ribosomal protein S5 OS=Pelobacter propionicus (strain DSM
2379) GN=rpsE PE=3 SV=1
Length = 162
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S L+V G+G G G+ LGK+ E ++R +A + LI V ++ T+ +
Sbjct: 28 GRRFSFSALIVVGDGCGYVGYGLGKANEVPEAIRKGVEQAKKNLIKVPVNQNQTIPFEIE 87
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG ++ ++ GTG+I + I +A GI +I +K GS NP +VKA F GL +
Sbjct: 88 GKFGAGRLLMKPASAGTGVIAGGAARAIFEAAGINNILSKCLGSNNPHNVVKAAFAGLQR 147
Query: 274 QKSHQQLA 281
KS ++LA
Sbjct: 148 LKSPEELA 155
>sp|B0T2D9|RS5_CAUSK 30S ribosomal protein S5 OS=Caulobacter sp. (strain K31) GN=rpsE
PE=3 SV=1
Length = 201
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 75/131 (57%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L+V G+ +G G+ GK+ E ++R A A + ++ V + T+ HD Y
Sbjct: 48 GRRFSFAALMVVGDQKGRVGYGHGKAREVPEAIRKATEEAKKTMVRVPLRESRTLHHDGY 107
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
++G K+ + P GTG+I ++ + + +G++D+ AK GS+NP +V+A F L
Sbjct: 108 GRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPYNMVRATFEALKV 167
Query: 274 QKSHQQLAEEQ 284
Q S +Q+A ++
Sbjct: 168 QSSPRQIAAKR 178
>sp|Q30Z59|RS5_DESDG 30S ribosomal protein S5 OS=Desulfovibrio desulfuricans (strain
G20) GN=rpsE PE=3 SV=1
Length = 163
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S LVV G+G G GF +GK+ E ++R A RA + ++ V D T+ ++
Sbjct: 25 GRRFSFSALVVVGDGNGSVGFGMGKAQEVPEALRKATERAKKGMVQVP-LVDGTLPYEVL 83
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG ++ ++ +GTG+I ++ I +AVGI D+ AK G+ NP +++A GL
Sbjct: 84 GAFGAGRVLLKPASKGTGIIAGGAVRAIMEAVGIHDVLAKAIGTNNPHNVLRATMAGLTS 143
Query: 274 QKSHQQLAE 282
+S + +++
Sbjct: 144 LRSAEYVSQ 152
>sp|Q2RQX7|RS5_RHORT 30S ribosomal protein S5 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rpsE PE=3 SV=1
Length = 199
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + LVV G+G+G GF GK+ E ++R A ++A + +I V + T+ HD
Sbjct: 48 GRRFAFAALVVVGDGKGRVGFGTGKAREVPEAIRKATDQAKRTMIKVPLREGRTLHHDTN 107
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG + + P GTG+I ++ + + +G++D+ K G+TNP ++KA F L+
Sbjct: 108 GHFGAGWVTLRSAPAGTGIISGGPMRAVFETMGVQDVVGKCTGTTNPYNMIKATFDALVN 167
Query: 274 QKSHQQLA 281
++ +Q+A
Sbjct: 168 SQAPRQVA 175
>sp|A0L5Z0|RS5_MAGSM 30S ribosomal protein S5 OS=Magnetococcus sp. (strain MC-1) GN=rpsE
PE=3 SV=1
Length = 177
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
F +++ K + K R+ S +VV G+G+G G+ LGK+ E ++R A ++A +
Sbjct: 19 FIEKLVAIKRTAKVVKGGSRF-NFSAIVVVGDGKGSVGYGLGKAKEVPEAIRKATDQAQK 77
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
++I V+ T+ H+ +FG + + GTG+I ++ I +A+GI D+ AK
Sbjct: 78 QMIKVEIKDGRTIFHETIGRFGAGNVVLRPASAGTGIIAGGSMRPIFEAIGISDVLAKST 137
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQQL 286
G++NP ++KA F L +++A ++ L
Sbjct: 138 GTSNPHNLIKATFAALQNISPPKRVAAKRGL 168
>sp|Q1QDG9|RS5_PSYCK 30S ribosomal protein S5 OS=Psychrobacter cryohalolentis (strain
K5) GN=rpsE PE=3 SV=1
Length = 171
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 134 DGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRA 193
DG R++ V + K GR + + L V G+G G GF GK+ E A+++ A A
Sbjct: 14 DGLVERLVTVDRVAKVVK-GGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAIQKALEAA 72
Query: 194 GQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAK 253
+ +I V+ D T+ H + G +K++++ EGTG+I ++ + + G+KD+ K
Sbjct: 73 KRNMITVE-LNDATLYHPIKARHGASKVYMQPASEGTGVIAGGAMRAVLEVAGVKDVLTK 131
Query: 254 VEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQ 284
GSTN +V+A F GL + +++A ++
Sbjct: 132 CYGSTNTANVVRATFNGLRDMSTPEKMAAKR 162
>sp|Q4FUD9|RS5_PSYA2 30S ribosomal protein S5 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rpsE PE=3 SV=1
Length = 171
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 134 DGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRA 193
DG R++ V + K GR + + L V G+G G GF GK+ E A+++ A A
Sbjct: 14 DGLVERLVTVDRVAKVVK-GGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAIQKALEAA 72
Query: 194 GQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAK 253
+ +I V+ D T+ H + G +K++++ EGTG+I ++ + + G+KD+ K
Sbjct: 73 KRNMITVE-LNDATLYHPIKARHGASKVYMQPASEGTGVIAGGAMRAVLEVAGVKDVLTK 131
Query: 254 VEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQ 284
GSTN +V+A F GL + +++A ++
Sbjct: 132 CYGSTNTANVVRATFNGLRDMSTPEKMAAKR 162
>sp|A1VE99|RS5_DESVV 30S ribosomal protein S5 OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=rpsE PE=3 SV=1
Length = 163
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S LVV G+G+G GF LGK+ E ++R A RA + +I V D T+ ++
Sbjct: 25 GRRFSFSALVVVGDGKGSVGFGLGKAQEVPEALRKATERAKKSMIEVPLI-DGTLPYEIL 83
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG + ++ +GTG+I ++ + +AVG+ D+ K G+ NP +++A GL
Sbjct: 84 GRFGAGHVLLKPASKGTGIIAGGAVRAVMEAVGVTDVLTKAIGTNNPHNVLRATVAGLAS 143
Query: 274 QKSHQQLAE 282
+S +++ +
Sbjct: 144 LRSAEEVGQ 152
>sp|Q72CG3|RS5_DESVH 30S ribosomal protein S5 OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=rpsE PE=3
SV=1
Length = 163
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S LVV G+G+G GF LGK+ E ++R A RA + +I V D T+ ++
Sbjct: 25 GRRFSFSALVVVGDGKGSVGFGLGKAQEVPEALRKATERAKKSMIEVPLI-DGTLPYEIL 83
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG + ++ +GTG+I ++ + +AVG+ D+ K G+ NP +++A GL
Sbjct: 84 GRFGAGHVLLKPASKGTGIIAGGAVRAVMEAVGVTDVLTKAIGTNNPHNVLRATVAGLAS 143
Query: 274 QKSHQQLAE 282
+S +++ +
Sbjct: 144 LRSAEEVGQ 152
>sp|Q5LW41|RS5_RUEPO 30S ribosomal protein S5 OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rpsE PE=3 SV=1
Length = 190
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
F R++ V K R+ + LVV G+ +G GF GK+ E ++R A +A +
Sbjct: 21 FADRLVAINRVSKTVKGGKRF-GFAALVVVGDQKGRVGFGKGKAKEVPEAIRKATEQAKR 79
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
++I VQ + T+ HD + G K+ + PEGTG+I ++ + + +G+KD+ +K
Sbjct: 80 QMIRVQLREGRTLHHDIEGRHGAGKVVMRAAPEGTGIIAGGPMRAVFEMLGVKDVVSKSL 139
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEEND 296
GS NP +++A GL +++S + +A+ + + + + D
Sbjct: 140 GSANPYNMIRATIDGLKKEQSPRSVAQRRGKKVADILPKRD 180
>sp|Q2N9C8|RS5_ERYLH 30S ribosomal protein S5 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rpsE PE=3 SV=1
Length = 284
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 134 DGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRA 193
DG +++ V K R+ + LVV G+GQG GF GK+ E +++ A A
Sbjct: 108 DGIIEKLVHINRVSKTVKGGKRF-GFAALVVVGDGQGRVGFGKGKAREVPEAIQKATAAA 166
Query: 194 GQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAK 253
+K+I V + T+ HD +FG K+ V P GTG+I ++ + +++G+ D+ K
Sbjct: 167 RKKMIRVALKEGRTLHHDGNGRFGAGKVTVRTAPPGTGIIAGGPMRAVFESLGVADVVTK 226
Query: 254 VEGSTNPQAIVKAFFLGLMQQKSHQQLAE 282
G++NP +++A F L Q S + +A+
Sbjct: 227 SVGTSNPYNMIRATFDALQDQTSPKSVAQ 255
>sp|Q0BUN3|RS5_GRABC 30S ribosomal protein S5 OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=rpsE PE=3 SV=1
Length = 190
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + LVV G+ +G G+ GK+ E ++R A RA + +I V + T+ HD Y
Sbjct: 36 GRRFAFAALVVVGDQKGRVGYGAGKAREVPEAIRKATERAKRSMIRVPMKEGRTLHHDVY 95
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG K+ + GTG+I ++ + +++GI D+ AK GS NP +VKA F L +
Sbjct: 96 GHFGAGKVVLRSATAGTGIIAGGPMRAVFESLGIGDVVAKSLGSRNPHNMVKATFAALER 155
Query: 274 QKSHQQLAEEQ 284
S + +A +
Sbjct: 156 CSSPRSVASRR 166
>sp|Q8A493|RS5_BACTN 30S ribosomal protein S5 OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=rpsE PE=3 SV=1
Length = 172
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S +VV GN +G+ G+ LGK+ E A++ A + L+ V K TV H+
Sbjct: 33 GRTFSFSAIVVVGNEEGIIGWGLGKAGEVTAAIAKGVESAKKNLVKVPVLKG-TVPHEQS 91
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG ++F++ GTG++ ++ + ++VGI D+ AK +GS+NP +VKA L +
Sbjct: 92 AKFGGAEVFIKPASHGTGVVAGGAMRAVLESVGITDVLAKSKGSSNPHNLVKATIEALSE 151
Query: 274 QKSHQQLAEEQQLHL 288
+ + +A+ + + +
Sbjct: 152 MRDARMIAQNRGISV 166
>sp|Q9A8T6|RS5_CAUCR 30S ribosomal protein S5 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rpsE PE=3 SV=1
Length = 201
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L+V G+ +G GF GK+ E ++R A A + +I V + T+ HD
Sbjct: 48 GRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKTMIRVPLRESRTLHHDGA 107
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
++G K+ + P GTG+I ++ + + +G++D+ AK GS+NP +V+A F L
Sbjct: 108 GRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPYNMVRATFEALKV 167
Query: 274 QKSHQQLA 281
Q S +Q+A
Sbjct: 168 QSSPRQIA 175
>sp|B8H4F1|RS5_CAUCN 30S ribosomal protein S5 OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=rpsE PE=3 SV=1
Length = 201
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L+V G+ +G GF GK+ E ++R A A + +I V + T+ HD
Sbjct: 48 GRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKTMIRVPLRESRTLHHDGA 107
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
++G K+ + P GTG+I ++ + + +G++D+ AK GS+NP +V+A F L
Sbjct: 108 GRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPYNMVRATFEALKV 167
Query: 274 QKSHQQLA 281
Q S +Q+A
Sbjct: 168 QSSPRQIA 175
>sp|Q64NM5|RS5_BACFR 30S ribosomal protein S5 OS=Bacteroides fragilis (strain YCH46)
GN=rpsE PE=3 SV=1
Length = 172
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S +VV GN +G+ G+ LGK+ E A++ A + L V K TV H+
Sbjct: 33 GRTFSFSAIVVVGNEEGIIGWGLGKAGEVTAAIAKGVESAKKNLTRVPVLKG-TVPHEQS 91
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG ++F++ GTG++ ++ + ++VG+ D+ AK +GS+NP +VKA + L +
Sbjct: 92 AKFGGAEVFIKPASHGTGVVAGGAMRAVLESVGVTDVLAKSKGSSNPHNLVKATIMALGE 151
Query: 274 QKSHQQLAEEQQLHL 288
+ + +A+ + + +
Sbjct: 152 MRDARMIAQNRGISV 166
>sp|Q5L8C6|RS5_BACFN 30S ribosomal protein S5 OS=Bacteroides fragilis (strain ATCC 25285
/ NCTC 9343) GN=rpsE PE=3 SV=1
Length = 172
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S +VV GN +G+ G+ LGK+ E A++ A + L V K TV H+
Sbjct: 33 GRTFSFSAIVVVGNEEGIIGWGLGKAGEVTAAIAKGVESAKKNLTRVPVLKG-TVPHEQS 91
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG ++F++ GTG++ ++ + ++VG+ D+ AK +GS+NP +VKA + L +
Sbjct: 92 AKFGGAEVFIKPASHGTGVVAGGAMRAVLESVGVTDVLAKSKGSSNPHNLVKATIMALGE 151
Query: 274 QKSHQQLAEEQQLHL 288
+ + +A+ + + +
Sbjct: 152 MRDARMIAQNRGISV 166
>sp|Q7UN03|RS5_RHOBA 30S ribosomal protein S5 OS=Rhodopirellula baltica (strain SH1)
GN=rpsE PE=3 SV=1
Length = 177
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 135 GFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAG 194
G R+++ K + K GR + + +VV GNG G G+ GK+ E S++ A+ +A
Sbjct: 20 GLLDRVVKIKRCAAVVKG-GRRFSFAAMVVVGNGSGQVGWGYGKANEVPPSVQKAQKQAS 78
Query: 195 QKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKV 254
+ +I+V + ++ H + ++G ++ + GTG+I + ++ +C+A GI DI K
Sbjct: 79 RSMIHVP-LVEGSIPHQVWGRYGAARVVLIPAGAGTGIIAGQAVRAVCEACGIHDILTKS 137
Query: 255 EGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLH 287
G+ NP +VKA + + ++ +Q+A + L+
Sbjct: 138 YGTNNPVTLVKATLDAMSKLRTREQIAALRGLN 170
>sp|B8DNB3|RS5_DESVM 30S ribosomal protein S5 OS=Desulfovibrio vulgaris (strain Miyazaki
F / DSM 19637) GN=rpsE PE=3 SV=1
Length = 163
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S LVV G+ +G GF LGK+ E ++R A RA + ++ + D T+ ++
Sbjct: 25 GRRFSFSALVVVGDAKGAVGFGLGKAQEVPEALRKATERAKKDMVQIPLV-DGTLPYEIL 83
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG + ++ +GTG+I ++ + +AVG+ D+ AK G+ NP +++A GL
Sbjct: 84 GEFGAGCVMLKPASKGTGIIAGGAVRAVMEAVGVTDVLAKAIGTNNPHNVLRATMAGLTS 143
Query: 274 QKSHQQLAEEQQLHL 288
+S + +++ + + L
Sbjct: 144 LRSAEYVSQLRGMKL 158
>sp|Q2W2K8|RS5_MAGSA 30S ribosomal protein S5 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rpsE PE=3 SV=1
Length = 210
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 72/131 (54%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + LVV G+ +G G GK+ E ++R A +A + +I + + T+ HD Y
Sbjct: 58 GRRFAFAALVVVGDAKGRVGCGSGKAREVPEAIRKATEQAKRNMIKIALREGRTLHHDAY 117
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG ++ + P GTG+I ++ + + +G++D+ AK G++NP ++KA F L+
Sbjct: 118 GHFGAGRVILRAAPAGTGIIAGGPMRAVFETMGVQDVVAKCLGTSNPHNMIKATFDALIN 177
Query: 274 QKSHQQLAEEQ 284
S + +A ++
Sbjct: 178 LASPRHVAAKR 188
>sp|Q16AC7|RS5_ROSDO 30S ribosomal protein S5 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rpsE PE=3 SV=1
Length = 191
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
F R++ V K R+ + LVV G+ +G GF GK+ E ++R A +A +
Sbjct: 21 FADRLVAINRVSKTVKGGKRF-GFAALVVVGDQKGRVGFGKGKAKEVPEAIRKATEQAKR 79
Query: 196 KLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVE 255
++I VQ + T+ HD + G K+ + PEGTG+I ++ + + +G+KD+ +K
Sbjct: 80 QMIRVQLREGRTLHHDMEGRHGAGKVVMRSAPEGTGIIAGGPMRAVFEMLGVKDVVSKSI 139
Query: 256 GSTNPQAIVKAFFLGLMQQKSHQQLAEEQ 284
GS NP +++A GL ++ S + +A+ +
Sbjct: 140 GSQNPYNMIRATMDGLRKESSPRSVAQRR 168
>sp|A6KYH8|RS5_BACV8 30S ribosomal protein S5 OS=Bacteroides vulgatus (strain ATCC 8482
/ DSM 1447 / NCTC 11154) GN=rpsE PE=3 SV=1
Length = 171
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + S +VV GN G+ G+ LGK+ E A++ A + L V K TV H+
Sbjct: 32 GRTFSFSAIVVVGNEDGIIGWGLGKAGEVTAAIAKGVEAAKKNLTRVPVLKG-TVPHEQS 90
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
+FG ++F++ GTG++ ++ + ++VG+ D+ AK +GS+NP +VKA L L +
Sbjct: 91 AKFGGAEVFIKPASTGTGVVAGGAMRAVLESVGVTDVLAKSKGSSNPHNLVKATILALGE 150
Query: 274 QKSHQQLAEEQQLHL 288
+ + +A+ + + +
Sbjct: 151 MRDARMVAQNRGVSM 165
>sp|A4XLR3|RS5_CALS8 30S ribosomal protein S5 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpsE PE=3 SV=1
Length = 168
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
G+ S +VV G+ G G GK+ E ++R A A + LI V T+ H+
Sbjct: 30 GKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEVP-IVGTTIPHEAI 88
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
FG +K+ ++ PEGTG+I ++ +C+ GIKDIR K GS NP +V A L Q
Sbjct: 89 GDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGSNNPANVVHATIEALKQ 148
Query: 274 QKSHQQLA 281
K +++A
Sbjct: 149 LKKPEEVA 156
>sp|A0PXW3|RS5_CLONN 30S ribosomal protein S5 OS=Clostridium novyi (strain NT) GN=rpsE
PE=3 SV=1
Length = 165
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 141 LEYKAVFCMKK----NSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQK 196
L+ K VF + GR S LVV G+ G G +GK+VE ++R A +
Sbjct: 10 LKEKVVFINRVAKVVKGGRNFRFSALVVVGDENGHVGVGMGKAVEIPEAIRKGIEDAKKH 69
Query: 197 LIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEG 256
L+ V D TV H +FG+ ++ + EGTG+I ++ + + G+KD+RAK G
Sbjct: 70 LVEVAMV-DTTVPHAIQGEFGRGRVLIMPATEGTGVIAGGPVRAVLELAGLKDVRAKSLG 128
Query: 257 STNPQAIVKAFFLGLMQQKSHQQLAE 282
S NP+ +V A GL + ++ +Q+A+
Sbjct: 129 SNNPKNMVGATINGLSRLRTAEQIAK 154
>sp|B4R8N4|RS5_PHEZH 30S ribosomal protein S5 OS=Phenylobacterium zucineum (strain HLK1)
GN=rpsE PE=3 SV=1
Length = 195
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 71/128 (55%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
GR + + L+V G+ +G GF GK+ E ++R A A + +I V + T+ HD
Sbjct: 39 GRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKSMIRVPLRESRTLHHDGA 98
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
++G K+ V P GTG+I ++ + + +G++D+ K GS+NP +V+A F L
Sbjct: 99 GRWGAGKVMVRAAPPGTGVIAGGPMRAVLETLGVQDVVGKSVGSSNPYNMVRATFEALKA 158
Query: 274 QKSHQQLA 281
Q S +Q+A
Sbjct: 159 QSSPRQVA 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,869,215
Number of Sequences: 539616
Number of extensions: 6369463
Number of successful extensions: 16906
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 15762
Number of HSP's gapped (non-prelim): 756
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)