Query psy10165
Match_columns 337
No_of_seqs 164 out of 1095
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:31:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_E Ribosomal protein S5; s 100.0 1.2E-59 4.2E-64 448.6 13.1 222 30-292 85-307 (308)
2 2vqe_E 30S ribosomal protein S 100.0 2.2E-55 7.4E-60 388.7 17.9 158 134-293 4-161 (162)
3 3j20_F 30S ribosomal protein S 100.0 7.3E-57 2.5E-61 417.2 8.7 190 67-282 13-216 (236)
4 3u5c_C Guanine nucleotide-bind 100.0 1.9E-55 6.6E-60 411.1 13.4 186 66-277 31-224 (254)
5 3i1m_E 30S ribosomal protein S 100.0 1.8E-55 6.2E-60 390.9 10.8 156 135-292 10-165 (167)
6 3r8n_E 30S ribosomal protein S 100.0 1.2E-54 4E-59 380.0 13.5 150 135-286 1-150 (150)
7 2xzm_E Ribosomal protein S5 co 100.0 7.7E-54 2.6E-58 406.9 13.0 188 67-279 24-230 (296)
8 1pkp_A Ribosomal protein S5; 2 100.0 1.4E-51 4.8E-56 360.5 14.9 142 134-277 9-150 (150)
9 3iz6_E 40S ribosomal protein S 100.0 8.2E-55 2.8E-59 410.2 -39.4 185 67-277 41-233 (274)
10 1vz0_A PARB, chromosome partit 48.5 52 0.0018 29.4 7.7 68 225-292 67-152 (230)
11 3adl_A RISC-loading complex su 39.0 30 0.001 26.6 3.9 42 154-200 44-85 (88)
12 2dix_A Interferon-inducible do 36.7 48 0.0017 25.1 4.7 39 154-197 36-74 (84)
13 3iuo_A ATP-dependent DNA helic 33.6 30 0.001 28.1 3.2 34 259-292 17-50 (122)
14 1di2_A XLRBPA, double stranded 32.5 65 0.0022 23.1 4.7 38 154-196 29-66 (69)
15 1t4n_A Ribonuclease III; DSRBD 31.5 49 0.0017 26.2 4.1 45 154-201 33-77 (94)
16 1uhz_A Staufen (RNA binding pr 31.1 65 0.0022 24.8 4.7 39 154-197 35-73 (89)
17 1h2i_A RAD52, DNA repair prote 29.3 1.6E+02 0.0054 26.7 7.5 75 119-194 63-147 (209)
18 3llh_A RISC-loading complex su 26.1 80 0.0027 24.1 4.4 39 155-198 43-81 (90)
19 2cpn_A TAR RNA-binding protein 26.0 96 0.0033 23.7 4.8 39 154-197 45-83 (89)
20 1x48_A Interferon-induced, dou 23.6 75 0.0026 24.3 3.8 36 158-197 37-72 (88)
21 1t4o_A Ribonuclease III; RNT1P 22.3 81 0.0028 26.0 3.9 47 154-203 35-81 (117)
22 3adj_A F21M12.9 protein; HYL1, 22.0 1.9E+02 0.0066 21.0 5.7 40 154-197 33-72 (76)
23 2khx_A Ribonuclease 3; drosha, 20.1 99 0.0034 23.5 3.8 43 155-201 36-78 (85)
No 1
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.2e-59 Score=448.57 Aligned_cols=222 Identities=18% Similarity=0.293 Sum_probs=154.9
Q ss_pred ceeeecccCCC-ChhHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCccCCCCCCCCCChhhhhhhcccccccccccc
Q psy10165 30 RELVQQTRLPP-DPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKR 108 (337)
Q Consensus 30 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~ple~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~ 108 (337)
..+|.|..+.+ +++.|+++.++++.+. |++|+|.++.|++|+++++.- .++.
T Consensus 85 e~~~~~~~~~~~~~~~e~e~~~~~e~l~----------ergwsg~TklGrlVk~~kik~----~~~~------------- 137 (308)
T 3bbn_E 85 EGYIPPRAVDEPPFESEEEIALAYEELY----------GAAYSGESLLGNDVYAMDSKI----KKAT------------- 137 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcCcccccccCHHHHHHHHHHhh----------ccCcccccccCccCCCccccc----hhhh-------------
Confidence 34677777744 4778888999888753 999999999999999995321 1222
Q ss_pred CCCCCCCcccccccCcccccccccCCCcceEEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHH
Q psy10165 109 GRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRN 188 (337)
Q Consensus 109 ~r~~~~~~~~~~~l~~~eiId~~~~~~f~~~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~Airk 188 (337)
.++..+++.+|+| +|+++||+|+||+|||+ +||++||+|||||||+||+||||+|||+|+.+||+|
T Consensus 138 --------~fsl~ike~ei~d-----~f~ekVv~I~RV~KvTk-gGRr~rF~AlVVVGDgnG~VGlG~GKAkEV~~AIrK 203 (308)
T 3bbn_E 138 --------GFGSKSKKEKIRD-----GFEENVVQVRRVTKVVK-GGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQK 203 (308)
T ss_dssp --------------------------CCEEEEEEEECCEEEET-TEEEECCEEEEEEECSSSEEEEEEEECSSHHHHHHH
T ss_pred --------ccccccccccccc-----cceeeEEEEeeeEEEec-CCcEEEEEEEEEEeCCCceEeeeeeecchHHHHHHH
Confidence 2556677777876 48899999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHccCcEEEeccCCcceeEeEEEEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHH
Q psy10165 189 AKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFF 268 (337)
Q Consensus 189 A~~~Ak~nli~V~r~~~~TIph~v~gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf 268 (337)
|+.+|++||++|+++++|||||++.|+||+++|+|+|||+|+||+|++++++||++|||+||++|++||+|++|++||||
T Consensus 204 Ai~~Akknli~V~r~~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~~vr~VLelAGIkDv~tKs~GStn~lN~vKATf 283 (308)
T 3bbn_E 204 AAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATI 283 (308)
T ss_dssp HHHTTTTSCEECCCCSSSBCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTTTTCCBEEEEEEECCCTTTTTTHHH
T ss_pred HHHHHHhCeEEEecCCCcccceEEEEEEeeEEEEEEECCCCCceecCcHHHHHHHhcCcceEEEeccCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHhCCchhhhc
Q psy10165 269 LGLMQQKSHQQLAEEQQLHLVEFS 292 (337)
Q Consensus 269 ~AL~~~~t~~~iA~~rG~~vve~~ 292 (337)
+||.+++|++++|++||++++|+.
T Consensus 284 ~AL~k~~s~~eVA~~RGk~v~ei~ 307 (308)
T 3bbn_E 284 VAVQTMRQFSDVARDRGIPMEELW 307 (308)
T ss_dssp HHHHTCCCHHHHHTTSCCCSCCCC
T ss_pred HHHHhcCCHHHHHHHcCCCHHHhc
Confidence 999999999999999999999884
No 2
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=100.00 E-value=2.2e-55 Score=388.75 Aligned_cols=158 Identities=25% Similarity=0.375 Sum_probs=148.6
Q ss_pred CCcceEEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEeccCCcceeEeEE
Q psy10165 134 DGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213 (337)
Q Consensus 134 ~~f~~~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~~~~TIph~v~ 213 (337)
.+|+++||+|++|+|||+ +||++||+|||+|||+||++|||+|||+|+++||++|+.+|++||++|+|++ |||||++.
T Consensus 4 ~~l~e~vv~I~rV~K~tk-gGr~~~F~alVvvGd~nG~vG~G~gKa~ev~~AIrkA~~~Ak~nli~V~~~~-~TIp~~v~ 81 (162)
T 2vqe_E 4 TDFEEKMILIRRTARMQA-GGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQN-GTIPHEIE 81 (162)
T ss_dssp -CCEEEEEEEEEEEEEET-TEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSEEECCCST-TSCSSCEE
T ss_pred cCceeEEEEEEeEEEEeC-CCcEEEEEEEEEEeCCCCeEecceEecccHHHHHHHHHHHHHhCcEEEecCC-CcccEEEE
Confidence 369999999999999999 9999999999999999999999999999999999999999999999999986 79999999
Q ss_pred EEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHHHHHhcCCCHHHHHHHhCCchhhhcc
Q psy10165 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSE 293 (337)
Q Consensus 214 gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf~AL~~~~t~~~iA~~rG~~vve~~~ 293 (337)
|+|++++|+|+|||+|+||+|++++++||++|||+||++|++||+||+|++||||+||.+++||+|+|+.||++++|+..
T Consensus 82 gk~gs~~V~l~Pap~GtGiiag~~~r~vl~~aGI~Dv~tk~~Gs~n~~N~vkAt~~aL~~~~s~~~vA~~RG~~~~~~~~ 161 (162)
T 2vqe_E 82 VEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQAQ 161 (162)
T ss_dssp EEETTEEEEEEECCTTSCEESCHHHHHHHHTTTCCSEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHTCC-------
T ss_pred EEeCcEEEEEEECCCCcceecCcHHHHHHHhcCccceEEEecCCCCcchHHHHHHHHHHhcCCHHHHHHHcCCCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.3e-57 Score=417.19 Aligned_cols=190 Identities=22% Similarity=0.323 Sum_probs=180.7
Q ss_pred CCCCCCCCCCCccCCCCCCCCCChhhhhhhccccccccccccCCCCCCCcccccccCcccccccccCCCcc----eEEEE
Q psy10165 67 ERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFD----TRILE 142 (337)
Q Consensus 67 e~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~~~~~~~~l~~~eiId~~~~~~f~----~~VL~ 142 (337)
+..|.|.++.|+.|.-- .+. +.+|++. ++.+|+|+|||||++ ++|+ ++||+
T Consensus 13 ~~~w~p~tklG~lVk~~-ki~--sleei~~---------------------~~lpike~eiid~~l-~~Lk~~~~e~Vl~ 67 (236)
T 3j20_F 13 LDEWEPKTKLGMMVKEG-QIT--DIHEIFR---------------------RGYQIKEPEIIDVLL-PEVNARENQEVLD 67 (236)
T ss_dssp TTSCCCSSHHHHHHHTT-CSC--CHHHHHH---------------------HTCCCCCSHHHHHHC-CSSSSCCEEEEEE
T ss_pred ccceeccccccceeecC-ccc--cHHHHHh---------------------cCCCcccHHHHHHHH-HhhcccCCcEEEE
Confidence 45799999999999875 554 7999999 999999999999877 8888 99999
Q ss_pred EeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEecc---------CCcceeEeEE
Q psy10165 143 YKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRY---------KDHTVLHDFY 213 (337)
Q Consensus 143 v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~---------~~~TIph~v~ 213 (337)
|++|+|||+ +||++||+|||||||+||+||||+|||+|+++||++|+.+|++||++|+|+ ++|||||++.
T Consensus 68 I~rV~K~tk-gGrr~rF~AlVvVGD~nG~VGlG~gKakEV~~AIrkAi~~Ak~nli~V~r~~g~W~~~~g~~hTIp~~V~ 146 (236)
T 3j20_F 68 IALTVRMTD-SGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVE 146 (236)
T ss_dssp ECCCEEEET-TEEEECEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHSEEECCCBSSCSSSCCSSCCBCSSCEE
T ss_pred EeeeEEeec-CCcEEEEEEEEEEECCCCcCccccccchhHHHHHHHHHHHHHhCeEEEecccccccccCCCCCceeeEEE
Confidence 999999999 999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred EEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCC-ChhhHHHHHHHHHhcCCCHHHHHH
Q psy10165 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGST-NPQAIVKAFFLGLMQQKSHQQLAE 282 (337)
Q Consensus 214 gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gst-n~~NvvkAtf~AL~~~~t~~~iA~ 282 (337)
|+|||++|+|+|||+|+||+|++++++||++|||+||++|++||+ |++|++||||+||++++|+.++++
T Consensus 147 Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelAGI~Dv~tks~Gst~n~~N~vKATf~AL~k~~s~~t~~~ 216 (236)
T 3j20_F 147 GKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPE 216 (236)
T ss_dssp EEETTEEEEEECCCSSCCCBSCHHHHHHHHHHTCCCCEEEEESCCSCHHHHHHHHHHHHHHHHHSCCTTT
T ss_pred EEECCEEEEEEcCCCcCCcccCcHHHHHHHhCCcceEEEEcccCCCCHHHHHHHHHHHHHhcccccChHH
Confidence 999999999999999999999999999999999999999999997 999999999999999998877654
No 4
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Probab=100.00 E-value=1.9e-55 Score=411.08 Aligned_cols=186 Identities=20% Similarity=0.339 Sum_probs=175.9
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCChhhhhhhccccccccccccCCCCCCCcccccccCcccccccccCCCcceEEEEEee
Q psy10165 66 LERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKA 145 (337)
Q Consensus 66 le~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~~~~~~~~l~~~eiId~~~~~~f~~~VL~v~r 145 (337)
-+..|.|.++.|+.|.-- .+. +.+||+. ++.+|+|+|||||++ ++|+++||+|++
T Consensus 31 ~~~~W~P~TklG~lVk~~-kik--sleei~~---------------------~slpikE~eiiD~~l-~~Lke~Vl~I~r 85 (254)
T 3u5c_C 31 EEKGWVPVTKLGRLVKAG-KIT--TIEEIFL---------------------HSLPVKEFQIIDTLL-PGLQDEVMNIKP 85 (254)
T ss_dssp ---CCCCCSHHHHHHHTT-CCC--CHHHHHH---------------------TTCCCCCHHHHHHHC-CCCBCCEEEEEE
T ss_pred cccceeecccccchhhcC-ccc--cHHHHHH---------------------cCCCccchHHHHHHH-HhhhhhEEEEee
Confidence 367899999999999875 554 8999999 999999999999877 999999999999
Q ss_pred eeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEecc-------CCcceeEeEEEEEce
Q psy10165 146 VFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRY-------KDHTVLHDFYTQFGK 218 (337)
Q Consensus 146 V~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~-------~~~TIph~v~gk~gs 218 (337)
|+|||+ +||++||+|||||||+||+||||+|||+|+++||++|+.+|++||++|+++ ++|||||++.|+|+|
T Consensus 86 VqK~tk-gGrr~rF~AlVVVGD~nG~VGlG~gkakEV~~AIrkAi~~Ak~nlipV~rgyWg~~~g~~hTIp~~V~Gk~Gs 164 (254)
T 3u5c_C 86 VQKQTR-AGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGS 164 (254)
T ss_dssp EEEEET-TEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHTCEECCEECSSSCCSSCCEESSCEEEEETT
T ss_pred eEEEec-CCcEEEEEEEEEecCCCCceeecccccchHHHHHHHHHHHHHhCeEEeccccccccCCCCcceeeEEEeeecc
Confidence 999999 999999999999999999999999999999999999999999999999995 799999999999999
Q ss_pred EEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCC-ChhhHHHHHHHHHhcCCCH
Q psy10165 219 TKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGST-NPQAIVKAFFLGLMQQKSH 277 (337)
Q Consensus 219 tkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gst-n~~NvvkAtf~AL~~~~t~ 277 (337)
++|+|+|||+|+||+|++++++||++|||+||++|++||+ |++|++||||+||++++++
T Consensus 165 ~~V~L~PAp~GtGIiag~~~r~vLelAGI~Dv~tks~Gst~t~~N~vKATf~AL~ktys~ 224 (254)
T 3u5c_C 165 VTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGF 224 (254)
T ss_dssp EEEEEEECCTTCCEESCHHHHHHHHHTTCCCEEEEEESCTTCHHHHHHHHHHHHHGGGGC
T ss_pred eEEEEecCCCCcCeecCcHHHHHHHhcCcceEEEEccccCCChHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999997 8999999999999998764
No 5
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=100.00 E-value=1.8e-55 Score=390.90 Aligned_cols=156 Identities=27% Similarity=0.435 Sum_probs=148.7
Q ss_pred CcceEEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEeccCCcceeEeEEE
Q psy10165 135 GFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYT 214 (337)
Q Consensus 135 ~f~~~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~~~~TIph~v~g 214 (337)
+|+++||+|++|+|||+ +||++||+|||+|||+||+||||+|||+|+++||++|+.+|++||++|++ ++|||||++.|
T Consensus 10 ~l~e~vv~I~rV~K~tk-~Gr~~~F~AlVvvGd~nG~VG~G~gka~Ev~~AI~kAi~~Ak~nli~V~~-~~~Tip~~v~g 87 (167)
T 3i1m_E 10 ELQEKLIAVNRVSKTVK-GGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL-NNGTLQHPVKG 87 (167)
T ss_dssp CCCEEEEEEEEEECCBT-TBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCC-BTTBCSSCEEE
T ss_pred ceeEEEEEEEeeEEEEc-CCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec-CCCeeeeEeee
Confidence 59999999999999999 99999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHHHHHhcCCCHHHHHHHhCCchhhhc
Q psy10165 215 QFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFS 292 (337)
Q Consensus 215 k~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf~AL~~~~t~~~iA~~rG~~vve~~ 292 (337)
+|++++|+|+|||+|+||+|++++++||++|||+|||+|++||+||+|++||||+||++++||+|+|+.||++++|+.
T Consensus 88 k~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~Dv~tk~~Gstn~~N~vkAtf~aL~~~~s~~~vA~~RG~~v~e~~ 165 (167)
T 3i1m_E 88 VHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEIL 165 (167)
T ss_dssp EETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECCCHHHHHHHTHHHHHSCCCSTTTTTTTTC------
T ss_pred eeccEEEEEEcCCCccceecCcHHHHHHHhCCcceEEEEeccCCChhHHHHHHHHHHHhcCCHHHHHHHhCCcHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=100.00 E-value=1.2e-54 Score=380.02 Aligned_cols=150 Identities=27% Similarity=0.448 Sum_probs=148.1
Q ss_pred CcceEEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEeccCCcceeEeEEE
Q psy10165 135 GFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYT 214 (337)
Q Consensus 135 ~f~~~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~~~~TIph~v~g 214 (337)
+|+++||+|++|+|||+ +||++||+|||+|||+||+||||+|||+|+++||++|+.+|++||++|++ ++|||||++.|
T Consensus 1 ~l~e~vv~i~rV~K~tk-~Gr~~~F~alVvvGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nli~V~~-~~~Tip~~v~g 78 (150)
T 3r8n_E 1 ELQEKLIAVNRVSKTVK-GGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL-NNGTLQHPVKG 78 (150)
T ss_dssp CCCEEEEEEEECCCCCS-SSCCCCEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSCCCCCC-SSSSCSSCEEE
T ss_pred CceEEEEEEeeeEEEec-CCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec-CCCeeeeEEee
Confidence 58899999999999999 99999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHHHHHhcCCCHHHHHHHhCC
Q psy10165 215 QFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQL 286 (337)
Q Consensus 215 k~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf~AL~~~~t~~~iA~~rG~ 286 (337)
+|++++|+|+|||+|+||+|++++++||++|||+||++|++||+|++|++||||+||++++||+|+|+.||+
T Consensus 79 k~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~D~~tk~~Gstn~~N~vkAt~~aL~~~~s~~~iA~~rGk 150 (150)
T 3r8n_E 79 VHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK 150 (150)
T ss_dssp EETTEEEEEECCCCSSCCBSCTTTHHHHHHTCCSSCEEEEEECCCHHHHHHHHHHHHHHSCCSSHHHHHSCC
T ss_pred EEccEEEEEEcCCCcCceecCcHHHHHHHhCCcceEEEEeccCCChhhHHHHHHHHHHccCCHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 7
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Probab=100.00 E-value=7.7e-54 Score=406.87 Aligned_cols=188 Identities=19% Similarity=0.300 Sum_probs=175.9
Q ss_pred CCCCCCCCCCCccCCCCCCCCCChhhhhhhccccccccccccCCCCCCCcccccccCcccccccccCC--------Ccce
Q psy10165 67 ERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFD--------GFDT 138 (337)
Q Consensus 67 e~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~~~~~~~~l~~~eiId~~~~~--------~f~~ 138 (337)
+..|.|.++.|+.|..- .+. ++|||+. ++.+|+|.||||+++.. +|++
T Consensus 24 ~~~W~P~TklGrlVk~g-kI~--sleei~~---------------------~slpIkE~eIiD~ll~~~~~~~~~~~L~e 79 (296)
T 2xzm_E 24 KNDWQPQTKLGRLVKYG-KIS--SLDEIFK---------------------YSIPIKEPEIIDHFYPKNKDVQAEHKLME 79 (296)
T ss_dssp CCCCCCCSSHHHHHHTT-CSC--CHHHHHH---------------------TTCCCCCSHHHHHHSCTTCCSCCTTCCEE
T ss_pred CccccccccccccccCC-ccC--CHHHHHh---------------------cCCCcCchhhhHHHhccCcccchhhhhee
Confidence 66899999999999887 665 8999999 89999999999987633 3999
Q ss_pred EEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEecc-------CCcceeEe
Q psy10165 139 RILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRY-------KDHTVLHD 211 (337)
Q Consensus 139 ~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~-------~~~TIph~ 211 (337)
+||+|++|+|||+ +||++||+|||||||+||+||||+|||+|+++||++|+.+|++||++|+|+ ++|||||+
T Consensus 80 kVv~I~rVqKvTk-gGRr~rF~AlVVVGD~nG~VGlG~GKAkEV~~AIrKAi~~Ak~nli~V~rg~wen~~g~~hTIph~ 158 (296)
T 2xzm_E 80 EVLQITPVQKQTQ-AGQRTRFKGFVVVGDSNGHIGLGWKVAKEVQGAIKGAITHAKLNMVPVRKGYWGNKIANAHTIPQK 158 (296)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEECCCBCSSSCCSSCCBCSSC
T ss_pred EEEEEEeEEEEec-CCcEEEEEEEEEEeCCCccCccceeechHHHHHHHHHHHHHHhCcEEEecccccccCCCCCeeeEE
Confidence 9999999999999 999999999999999999999999999999999999999999999999993 36999999
Q ss_pred EEEEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecC-CCChhhHHHHHHHHHhcC---CCHHH
Q psy10165 212 FYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEG-STNPQAIVKAFFLGLMQQ---KSHQQ 279 (337)
Q Consensus 212 v~gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~G-stn~~NvvkAtf~AL~~~---~t~~~ 279 (337)
|.|+|+|++|+|+|||+|+||+|++++++||++|||+||++|++| |+|++|++||||+||.++ .||++
T Consensus 159 V~Gk~Gs~~V~L~PAP~GTGIiAg~~~r~VLelAGI~Dv~tKs~G~S~n~~N~vKATf~AL~k~~s~~TPdl 230 (296)
T 2xzm_E 159 ITGKSGSVRIRLVPAPRGTGIVAAPIPKKVLQFAGVQDIYTSSQGCTRTRGNFLKATYYALANTYRYLTPDF 230 (296)
T ss_dssp EEEEETTEEEEEECCCSSCCCBSCHHHHHHHHTTTCCCCEEEEESCCSCHHHHHHHHHHHHHHHHHSCCTTT
T ss_pred EEEEECcEEEEEEECCCCcceecCcHHHHHHHhcCcCeEEEEcccCCCCccchhHHHHHHHHHHhcccCHHH
Confidence 999999999999999999999999999999999999999999999 559999999999999986 45544
No 8
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=100.00 E-value=1.4e-51 Score=360.50 Aligned_cols=142 Identities=33% Similarity=0.460 Sum_probs=138.3
Q ss_pred CCcceEEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEeccCCcceeEeEE
Q psy10165 134 DGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213 (337)
Q Consensus 134 ~~f~~~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~~~~TIph~v~ 213 (337)
++|+++||+|++|+|||+ +||++||+|||+|||+||++|||+|||+|+++||++|+.+|++||++|+|++ |||||++.
T Consensus 9 ~~l~e~vv~i~rV~K~tk-~Gr~~~F~alVvVGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nl~~V~~~~-~Tip~~v~ 86 (150)
T 1pkp_A 9 LELEERVVAVNRVAKVVK-GGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIVG-TTIPHEVI 86 (150)
T ss_dssp SCCEEEEEEEECSSSBCS-SCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCBT-TBCSSCEE
T ss_pred CCceEEEEEEEeEEEEeC-CCcEEEEEEEEEEeCCCCeEeeeEEecchHHHHHHHHHHHHHHCCeEEccCC-ceeeEEEE
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999998 99999999
Q ss_pred EEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHHHHHhcCCCH
Q psy10165 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSH 277 (337)
Q Consensus 214 gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf~AL~~~~t~ 277 (337)
|+|++++|+|+|||+|+||+|++++++||++|||+||++|++||+|++|++||||+||.+++||
T Consensus 87 gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~Dv~tk~~Gs~n~~N~vkAt~~aL~~~~s~ 150 (150)
T 1pkp_A 87 GHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLKRA 150 (150)
T ss_dssp EEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCCSEEEEECSCCSHHHHHHHHHHHHHHCC--
T ss_pred EEECCEEEEEEECCCCCccccCcHHHHHHHhcCcceEEEEecCCCChhHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 9
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=100.00 E-value=8.2e-55 Score=410.22 Aligned_cols=185 Identities=23% Similarity=0.331 Sum_probs=176.5
Q ss_pred CCCCCCCCCCCccCCCCCCCCCChhhhhhhccccccccccccCCCCCCCcccccccCcccccccccCCCcceEEEEEeee
Q psy10165 67 ERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAV 146 (337)
Q Consensus 67 e~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~~~~~~~~l~~~eiId~~~~~~f~~~VL~v~rV 146 (337)
+..|.|.++.|+.|.-- .+. +.+||+. ++++|+|+|||||++ ++|+++||+|++|
T Consensus 41 ~~eW~P~TkLG~lVk~~-kik--sleei~~---------------------~slpIkE~eIiD~~l-~~Lke~Vl~I~rV 95 (274)
T 3iz6_E 41 EEKWVPVTKLGRLVKEG-RFS--KIEEIYL---------------------HSLPVKEHQIVETLV-PGLKDEVMKITPV 95 (274)
T ss_dssp HHHHHHHHHHTCCCSSC-TTH--HHHHHHT---------------------THHHHHHHTCCSSSS-HHHHHHHHCCSHH
T ss_pred ccceeecccccceeccC-ccc--cHHHHHH---------------------cCCCccchHHHHHHH-HhhhhcEEEEeee
Confidence 56799999999999865 554 8999999 999999999999877 8999999999999
Q ss_pred eeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEecc-------CCcceeEeEEEEEceE
Q psy10165 147 FCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRY-------KDHTVLHDFYTQFGKT 219 (337)
Q Consensus 147 ~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~-------~~~TIph~v~gk~gst 219 (337)
+|||+ +||++||+|||||||+||+||||+|||+|+++||++|+.+|++||++|+++ ++|||||++.++|+|+
T Consensus 96 qK~tk-gGrr~rF~AlVVVGD~nG~VGlG~gKakEV~~AIrkAi~~AK~nlipV~rgyWg~~~g~~hTIph~V~Gk~Gs~ 174 (274)
T 3iz6_E 96 QKQTR-AGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSV 174 (274)
T ss_dssp HHHHT-TTCSSSCSSCCSHHHHCCCCEEEEEEECCEEECSSCEEECEEEEEEECSSSBCCCCEEESSHHHHHHHHHHHHH
T ss_pred EeEec-CCcEEEEEEEEEecCCCCceeccccccchHHHHHHHHHHHHHhCcEEeccccccccCCCCcccceEEEEEEcCE
Confidence 99999 999999999999999999999999999999999999999999999999995 7999999999999999
Q ss_pred EEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCC-ChhhHHHHHHHHHhcCCCH
Q psy10165 220 KIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGST-NPQAIVKAFFLGLMQQKSH 277 (337)
Q Consensus 220 kV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gst-n~~NvvkAtf~AL~~~~t~ 277 (337)
+|+|+|||+|+||+|++++++||++|||+||++|++||+ |++|++||||+||++++++
T Consensus 175 ~V~L~PAP~GTGIiag~~~r~vLelAGI~Dv~tks~Gst~~~~N~vKATf~AL~ktys~ 233 (274)
T 3iz6_E 175 TVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGF 233 (274)
T ss_dssp SSCBCCCBCSSSCBSSCEECCCSSCEEEEESSSCCCSHHHHHHHHHTCSSCEEEEESCC
T ss_pred EEEEeeCCCCcCeecCcHHHHHHhhcCcceEEEEccccCCChhhhHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999997 8999999999999997753
No 10
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=48.49 E-value=52 Score=29.45 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=49.8
Q ss_pred eCCCccceeechHHHHHHHHcCCCcceeeecC-----------------CC-ChhhHHHHHHHHHhcCCCHHHHHHHhCC
Q psy10165 225 KKPEGTGLICHRIIQEICKAVGIKDIRAKVEG-----------------ST-NPQAIVKAFFLGLMQQKSHQQLAEEQQL 286 (337)
Q Consensus 225 PaP~G~Glva~~~ir~Il~laGIkDv~aKv~G-----------------st-n~~NvvkAtf~AL~~~~t~~~iA~~rG~ 286 (337)
|.+-+|-|++|..=...|..+|++.+-|-+.. .. |+.-.+.|+-..+....|.++||+..|+
T Consensus 67 ~~~g~y~Ii~G~rR~~Aa~~lg~~~Ip~iv~~~~d~ea~~~~l~eN~~R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~ 146 (230)
T 1vz0_A 67 PQGDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGK 146 (230)
T ss_dssp EETTEEEEEECHHHHHHHHHHTCSEEEEEECCCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred EeCCEEEEEeCHHHHHHHHHcCCceeeEEEEeCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCc
Confidence 33445889998877788888999988777642 22 5666677766666667899999999998
Q ss_pred chhhhc
Q psy10165 287 HLVEFS 292 (337)
Q Consensus 287 ~vve~~ 292 (337)
+...++
T Consensus 147 s~~~V~ 152 (230)
T 1vz0_A 147 ARSTVA 152 (230)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 865554
No 11
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=38.96 E-value=30 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=28.7
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEE
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYV 200 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V 200 (337)
.....|.+-|.|++ .+|.|.|+++ ..|-+.|-..|...|..+
T Consensus 44 ~H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 44 AHRKEFTMTCRVER---FIEIGSGTSK--KLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTSCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEEEEECC---EEEEEeeCCH--HHHHHHHHHHHHHHHHcc
Confidence 44567888888876 2666666555 688888888887766433
No 12
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=36.68 E-value=48 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=27.4
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCc
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKL 197 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nl 197 (337)
.....|.+-|.|++ ..|.|.|+++ ..|-+.|-..|...|
T Consensus 36 ~h~~~F~~~v~v~~---~~~~G~G~SK--K~Aeq~AA~~aL~~L 74 (84)
T 2dix_A 36 IHVPTFTFRVTVGD---ITCTGEGTSK--KLAKHRAAEAAINIL 74 (84)
T ss_dssp SSSCEEEEEEEETT---EEEEECSSCT--THHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEeeeCCH--HHHHHHHHHHHHHHH
Confidence 34567888888864 7788888776 566677766666555
No 13
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=33.62 E-value=30 Score=28.10 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHHHhcCCCHHHHHHHhCCchhhhc
Q psy10165 259 NPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFS 292 (337)
Q Consensus 259 n~~NvvkAtf~AL~~~~t~~~iA~~rG~~vve~~ 292 (337)
+..+....|+..+.+..|+++||..||++..++.
T Consensus 17 ~k~~t~~~t~~l~~~G~sleeIA~~R~L~~~TI~ 50 (122)
T 3iuo_A 17 NKSKMKVSIVQQIDRKVALDDIAVSHGLDFPELL 50 (122)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHH
T ss_pred CCCccHHHHHHHHHcCCCHHHHHHHcCCCHHHHH
Confidence 5566778899999999999999999999986664
No 14
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=32.49 E-value=65 Score=23.09 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=25.4
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccC
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQK 196 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~n 196 (337)
.....|.+-|.+++ .+|-|.|+++ ..|-+.|-..|...
T Consensus 29 ~h~~~F~~~v~v~~---~~~~G~G~sK--K~Aeq~AA~~al~~ 66 (69)
T 1di2_A 29 PHKREFTITCRVET---FVETGSGTSK--QVAKRVAAEKLLTK 66 (69)
T ss_dssp GGGCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEeecCCH--HHHHHHHHHHHHHH
Confidence 34567888888875 2666666555 66777777766543
No 15
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=31.46 E-value=49 Score=26.21 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=29.9
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEe
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQ 201 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~ 201 (337)
.-...|.+-|.|+| ....|-|.|+++ ..|=+.|-..|...|--++
T Consensus 33 dH~k~F~v~v~i~~-~~~~g~G~G~SK--K~AEQ~AA~~AL~~l~~l~ 77 (94)
T 1t4n_A 33 AVDPNSIVECRVGD-GTVLGTGVGRNI--KIAGIRAAENALRDKKMLD 77 (94)
T ss_dssp SSCCSEEEEEECSS-SCEEEEEEESSH--HHHHHHHHHHHHHCHHHHH
T ss_pred CCCCeEEEEEEECC-EEEEEEEEeCCH--HHHHHHHHHHHHHHHHHHH
Confidence 34467888888877 226888888776 5666677666766554333
No 16
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=31.09 E-value=65 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=26.7
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCc
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKL 197 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nl 197 (337)
.....|.+-|.|++ ..|.|.|+++ ..|-+.|-..|...|
T Consensus 35 ~H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~AL~~L 73 (89)
T 1uhz_A 35 PRRREFVMQVKVGN---EVATGTGPNK--KIAKKNAAEAMLLQL 73 (89)
T ss_dssp STTCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEEeeCCH--HHHHHHHHHHHHHHH
Confidence 34567888888865 3566666665 677777777776655
No 17
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=29.31 E-value=1.6e+02 Score=26.66 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=44.7
Q ss_pred ccccCccccccc----ccCCCcceEEEEEeeeeeeecCCCceE-EEEEEEEE--eCCCC--ceeeeccc-chhHHHHHHH
Q psy10165 119 ARDLNRGQIIGI----DTFDGFDTRILEYKAVFCMKKNSGRYR-TVSTLVVT--GNGQG--LAGFALGK-SVEGRASMRN 188 (337)
Q Consensus 119 ~~~l~~~eiId~----~~~~~f~~~VL~v~rV~kmT~~~GR~~-rf~alVvV--GNgnG--~vG~G~GK-a~ev~~Airk 188 (337)
..+|....+|++ +-|+++...|+++.. ..+..+.|+.. .+.|+|=| -||.- -+|+|.+. .+.-..|+.+
T Consensus 63 v~YIeg~kvI~lANeiFGFNGWSs~I~~~~v-d~~d~~~gk~~v~~~aiVRVtLkDGt~~EdiG~G~~~n~~~kg~A~ek 141 (209)
T 1h2i_A 63 VCYIEGHRVINLANEMFGYNGWAHSITQQNV-DFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEK 141 (209)
T ss_dssp EEEECHHHHHHHHHHHHCTTTEEEEEEEEEE-EEEEESSSSEEEEEEEEEEEEETTSCEEEEEEEEEEEEESCHHHHHHH
T ss_pred EEEeeHHHHHHHHHhccCCCCCeeEEEEeec-eeEeccCCeEEEEEEEEEEEEECCCCEecceeeEEEecCchHHHHHHH
Confidence 457777777764 778999999998863 33333245432 23444333 34333 36777665 3455677777
Q ss_pred HHHHHc
Q psy10165 189 AKNRAG 194 (337)
Q Consensus 189 A~~~Ak 194 (337)
|+..|.
T Consensus 142 AKKeAv 147 (209)
T 1h2i_A 142 ARKEAV 147 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
No 18
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=26.12 E-value=80 Score=24.12 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=26.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcE
Q psy10165 155 RYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLI 198 (337)
Q Consensus 155 R~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli 198 (337)
....|.+-|.|++ ..|-|.|+++ ..|=+.|-..|...|.
T Consensus 43 H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~aL~~L~ 81 (90)
T 3llh_A 43 HQPNFTFRVTVGD---TSCTGQGPSK--KAAKHKAAEVALKHLK 81 (90)
T ss_dssp --CCEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEEECC---EEEEEEeCCH--HHHHHHHHHHHHHHHH
Confidence 4457888888864 4677766665 6777888777776554
No 19
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=25.97 E-value=96 Score=23.74 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=26.3
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCc
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKL 197 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nl 197 (337)
.....|.+-|.|++ ..|.|.|++ -..|-+.|-..|...|
T Consensus 45 ~h~~~F~~~v~i~g---~~~~G~G~S--KK~Aeq~AA~~AL~~L 83 (89)
T 2cpn_A 45 AHRKEFTMTCRVER---FIEIGSGTS--KKLAKRNAAAKMLLRV 83 (89)
T ss_dssp SSSCEEEEEEEETT---EEEEEEESS--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEeeeCC--HHHHHHHHHHHHHHHH
Confidence 44567888888875 256666555 4677777777776554
No 20
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=23.63 E-value=75 Score=24.27 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=24.8
Q ss_pred EEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCc
Q psy10165 158 TVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKL 197 (337)
Q Consensus 158 rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nl 197 (337)
.|.+-|.|++ -..|.|.|+++ ..|-+.|-..|...|
T Consensus 37 ~F~~~v~v~g--~~~~~G~G~SK--K~Aeq~AA~~AL~~L 72 (88)
T 1x48_A 37 RFICKCKIGQ--TMYGTGSGVTK--QEAKQLAAKEAYQKL 72 (88)
T ss_dssp CEEEEEEESS--CEEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred eEEEEEEECC--EEEEEeecCCH--HHHHHHHHHHHHHHH
Confidence 5888888866 35677777665 567777777776655
No 21
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=22.32 E-value=81 Score=26.01 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=31.7
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEecc
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRY 203 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~ 203 (337)
.-...|.+-|.|+| ...+|.|.|+++ ..|=+.|-..|...+--++-|
T Consensus 35 dH~k~F~v~V~i~g-~~~~g~G~G~SK--K~AEQ~AA~~AL~~l~~l~Ky 81 (117)
T 1t4o_A 35 AVDPNSIVECRVGD-GTVLGTGVGRNI--KIAGIRAAENALRDKKMLDFY 81 (117)
T ss_dssp SSCCCEEEEEECTT-CCEEEEEEESSH--HHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCCeEEEEEEECC-EEEEEEEEeCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888877 226788888776 566677777776665554444
No 22
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=22.05 E-value=1.9e+02 Score=21.03 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=25.9
Q ss_pred CceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCc
Q psy10165 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKL 197 (337)
Q Consensus 154 GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nl 197 (337)
.....|.+-|.|++ -.+|-|.|++ -..|=+.|-..|...|
T Consensus 33 ~h~~~F~~~v~v~g--~~~~~G~G~s--KK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 33 GRVTQFTCTVEIGG--IKYTGAATRT--KKDAEISAGRTALLAI 72 (76)
T ss_dssp SSCEEEEEEEEETT--EEEECCCBSS--HHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEECC--EEEEEeccCC--HHHHHHHHHHHHHHHH
Confidence 45567888888865 2456666555 4667777776665543
No 23
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=20.13 E-value=99 Score=23.47 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=29.7
Q ss_pred ceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEe
Q psy10165 155 RYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQ 201 (337)
Q Consensus 155 R~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~ 201 (337)
-...|.+-|.|++ -.+|.|.|+++ ..|=+.|-..|...|....
T Consensus 36 H~~~F~v~V~v~g--~~~~~G~G~SK--K~AEq~AA~~AL~~L~~~~ 78 (85)
T 2khx_A 36 HARTYTVAVYFKG--ERIGCGKGPSI--QQAEMGAAMDALEKYNFPQ 78 (85)
T ss_dssp SCCCEEEEEEETT--EECCCEEESSH--HHHHHHHHHHHHTTCCSSC
T ss_pred CCCcEEEEEEECC--EEEEEEeeCCH--HHHHHHHHHHHHHHHhHhh
Confidence 3456888888876 34566666554 7888888888887775443
Done!