RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10165
(337 letters)
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 81
Score = 90.5 bits (225), Expect = 1e-23
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 207 TVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKA 266
T+ H +++F++ EGTG+I ++ + + G+ ++ AK GSTNP +V+A
Sbjct: 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRA 61
Query: 267 FFLGLMQQKSHQQLAEE 283
GL S + +A +
Sbjct: 62 TIDGLENMNSPEMVAAK 78
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 87.5 bits (217), Expect = 2e-22
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 207 TVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKA 266
T+ H+ +FG +KI ++ GTG+I + + I + G+ DI K GS NP I A
Sbjct: 2 TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYA 61
Query: 267 FFLGLMQQKSHQQLAEE 283
L Q ++ +
Sbjct: 62 TMEALRQLRTKADVERL 78
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 71
Score = 79.7 bits (197), Expect = 9e-20
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 206 HTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVK 265
T+ H+ FG +I ++ EGTG+I + + + GI DI +K GS P +V+
Sbjct: 2 TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVR 61
Query: 266 AFFLGLMQQK 275
A F GL Q K
Sbjct: 62 ATFDGLKQLK 71
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 50.0 bits (120), Expect = 5e-09
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
F+ +++ + M+ GR LVV G+ QG G GK+ E +++ A A +
Sbjct: 2 FEEKMILIRRTARMQA-GGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARR 60
Query: 196 KLIYV 200
++ V
Sbjct: 61 NMVEV 65
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 48.1 bits (115), Expect = 2e-08
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
+++ V K GR + + L V G+G G GF GK+ E A+++ A +A +
Sbjct: 2 LQEKLIAVNRVSKTVK-GGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARR 60
Query: 196 KLIYVQRY 203
+I V
Sbjct: 61 NMINVALN 68
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 43.5 bits (103), Expect = 1e-06
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 136 FDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQ 195
+ R++ V + K GR S LVV G+ G GF GK+ E ++R A A +
Sbjct: 8 LEERVVAVNRVAKVVK-GGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKK 66
Query: 196 KLIYV 200
LI V
Sbjct: 67 NLIEV 71
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 160
Score = 30.6 bits (68), Expect = 0.17
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 28 RGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVG 87
R V + P D ++ + G R R W KLG P VG
Sbjct: 102 RVGVSVWERYTGPYTDECKPMVDQMMNKRVG-VRIVARRTRSWDHRKLGL----PHMSVG 156
Query: 88 ENTA 91
+TA
Sbjct: 157 GSTA 160
>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 202
Score = 29.4 bits (65), Expect = 0.54
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 17/69 (24%)
Query: 7 GWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQG---KYRKT 63
+ + P++ DR+ I L + Q QG Y +
Sbjct: 146 ALSALDPALGLPIDIGVEPIV--------------SDRDRVAITLAEAQRQGLLPDYTTS 191
Query: 64 PPLERGWSG 72
+ER +
Sbjct: 192 QEIERRLTA 200
>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
{Streptococcus suis [TaxId: 1307]}
Length = 194
Score = 27.9 bits (61), Expect = 1.3
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 7 GWIWNLGKINIQWPGLSAPVI 27
+ ++I+W L +
Sbjct: 153 FVNYADPSLDIKWENLEEAEV 173
>d1m5xa_ d.95.2.1 (A:) DNA endonuclease I-MsoI {Monomastix sp.
cl-1997 [TaxId: 141716]}
Length = 161
Score = 25.2 bits (55), Expect = 8.7
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 171 LAGFALGK-----SVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEK 225
+AGF G + R ++ K + + ++QR L D Y Q GK +
Sbjct: 10 IAGFLDGDGSIYAKLIPRPDYKDIKYQVSLAISFIQRKDKFPYLQDIYDQLGKRGNLRKD 69
Query: 226 KPE 228
+ +
Sbjct: 70 RGD 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.408
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,283,388
Number of extensions: 60105
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 11
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)