BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10166
         (104 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q92733|PRCC_HUMAN Proline-rich protein PRCC OS=Homo sapiens GN=PRCC PE=1 SV=1
          Length = 491

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 8/84 (9%)

Query: 20  LRKLGGRKRKG-EDLIVKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNSKHDGPTSQQKR 78
            ++L G++ +G E++   ++ G+  +S +QQW+TK L+ E T +     K + PT QQ+R
Sbjct: 394 FKRLQGKRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSFSKKKGEQPTGQQRR 453

Query: 79  KHQITYLAFQG-------DNEWTE 95
           KHQITYL  Q         N W+E
Sbjct: 454 KHQITYLIHQAKERELELKNTWSE 477


>sp|A6VG76|RF1_METM7 Peptide chain release factor subunit 1 OS=Methanococcus
          maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3
          SV=1
          Length = 419

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 20 LRKLGGRKRKGEDLIVKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNSKH 69
          LR+L G+K KG +LI   V     +SD  Q+L ++LS  +  +     K+
Sbjct: 16 LRELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKN 65


>sp|Q6WRX3|ZY11A_HUMAN Protein zyg-11 homolog A OS=Homo sapiens GN=ZYG11A PE=2 SV=3
          Length = 759

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 43  LVSDSQQWLTKQLSTETTYRPSHNSKHDGPTSQQKRKHQITYLAFQ 88
           L SD Q W+++     T  +  H +  + P+S  K    +TY +F+
Sbjct: 627 LTSDRQLWISRDFQRRTLLQDLHATIQNWPSSSCKMTALVTYRSFK 672


>sp|O36414|TEGU_ALHV1 Probable large tegument protein OS=Alcelaphine herpesvirus 1 (strain
            C500) GN=64 PE=3 SV=1
          Length = 2606

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 44   VSDSQQWLTKQLSTETTYRPSHNSKHDGPTSQQKRKHQITYLAFQ 88
            V    +W+++QL       P  N    GP   ++RK+ I   ++Q
Sbjct: 2422 VGSRAKWVSRQLPPHDFVEPVENGDPPGPPGSEERKYSIRQESYQ 2466


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.130    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,838,214
Number of Sequences: 539616
Number of extensions: 1437954
Number of successful extensions: 3444
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3437
Number of HSP's gapped (non-prelim): 11
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)