Query psy10166
Match_columns 104
No_of_seqs 51 out of 53
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 19:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10253 PRCC: Mitotic checkpo 99.9 4.6E-22 1E-26 146.2 5.2 87 13-102 82-175 (182)
2 KOG3903|consensus 99.8 1E-21 2.2E-26 162.9 3.9 79 6-102 318-403 (410)
3 PF15144 DUF4576: Domain of un 31.5 13 0.00027 25.9 -0.5 38 34-71 48-85 (88)
4 PF04487 CITED: CITED; InterP 28.0 25 0.00055 27.9 0.6 20 4-23 157-176 (214)
5 PF04783 DUF630: Protein of un 26.4 18 0.00039 23.4 -0.4 21 8-28 2-22 (60)
6 PF13986 DUF4224: Domain of un 22.5 52 0.0011 19.8 1.1 17 13-29 2-18 (47)
7 PF06518 DUF1104: Protein of u 21.2 63 0.0014 22.3 1.5 16 10-25 2-17 (93)
8 PF14190 DUF4313: Domain of un 20.6 1E+02 0.0022 21.7 2.5 27 34-63 46-73 (105)
9 PF10562 CaM_bdg_C0: Calmoduli 15.8 1.5E+02 0.0032 16.8 1.9 14 83-96 14-27 (29)
10 PF06465 DUF1087: Domain of Un 14.8 1.1E+02 0.0024 20.1 1.4 17 20-36 43-59 (66)
No 1
>PF10253 PRCC: Mitotic checkpoint regulator, MAD2B-interacting; InterPro: IPR018800 This is the highly conserved C-terminal domain of the renal papillary carcinoma protein PRCC. The function of this domain is not known.
Probab=99.85 E-value=4.6e-22 Score=146.18 Aligned_cols=87 Identities=25% Similarity=0.449 Sum_probs=80.4
Q ss_pred ccChHHHHHhhcCCCCCCccceEEecCCCCccchHHHHHHHhhcccccccCCCCCCCCCCChhhhhhhhhHHHHhhh---
Q psy10166 13 IVSMSHELRKLGGRKRKGEDLIVKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNSKHDGPTSQQKRKHQITYLAFQG--- 89 (104)
Q Consensus 13 ~iddea~~rL~Gkr~R~~eei~iIdV~~dd~l~~~~qwl~K~Ltee~~~~p~s~~~~~~Ps~~~KRKHQITYLA~qA--- 89 (104)
.++..++.+|.|+++++ +++||||++|+++++.++|+.+.++++..+++.+.. +..|+..+||||||||||++|
T Consensus 82 ~~~~~~~r~l~~r~~~~--~~~iie~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~krKHQit~L~~~A~~~ 158 (182)
T PF10253_consen 82 NLSAAARRKLFGRGGRG--NIKIIEFNADDEYASNEEWLAKALTEEAAAQQESSH-NPVPSIAQKRKHQITYLAHQAKEN 158 (182)
T ss_pred hcCHHHHHHHhcccccC--ccceEEecHHHhccchHHHHHhhhhhhhhccccccc-CCCcccccCCcchHHHHHHHHHHH
Confidence 88999999999987666 999999999999999999999999999999997664 778888899999999999999
Q ss_pred ----hhhHhHhhhhhhc
Q psy10166 90 ----DNEWTERTVVCLK 102 (104)
Q Consensus 90 ----kn~Wa~nr~tRR~ 102 (104)
+++||.||++||+
T Consensus 159 e~eL~e~~a~~r~~kr~ 175 (182)
T PF10253_consen 159 EEELEERWAQGRKNKRE 175 (182)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7899999999996
No 2
>KOG3903|consensus
Probab=99.84 E-value=1e-21 Score=162.88 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=71.4
Q ss_pred cccCcccccChHHHHHhhcCCCCCCccceEEecCCCCccchHHHHHHHhhcccccccCCCCCCCCCCChhhhhhhhhHHH
Q psy10166 6 RQDCDFHIVSMSHELRKLGGRKRKGEDLIVKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNSKHDGPTSQQKRKHQITYL 85 (104)
Q Consensus 6 ~~~~d~~~iddea~~rL~Gkr~R~~eei~iIdV~~dd~l~~~~qwl~K~Ltee~~~~p~s~~~~~~Ps~~~KRKHQITYL 85 (104)
+..-++++|.|+.+.||+|. +.+|+||+|.| .++||...|++.++++++|+ ++|||||||||
T Consensus 318 ~iae~m~~Ivdvn~drl~~~----r~e~n~vki~G------~~~wm~~~la~s~t~q~~sk--------l~RRKHQITYL 379 (410)
T KOG3903|consen 318 RIAEQMPEIVDVNQDRLMKN----RPEVNQVKITG------IAFWMAYQLATSSTKQKVSK--------LHRRKHQITYL 379 (410)
T ss_pred hcchhhhHHHhHHHHHHhcc----cccccchhhhh------HHHHhhhcccccccccchhh--------hhhhhHHHHHH
Confidence 33458899999999999997 47999999998 79999999999999999865 35999999999
Q ss_pred Hhhh-------hhhHhHhhhhhhc
Q psy10166 86 AFQG-------DNEWTERTVVCLK 102 (104)
Q Consensus 86 A~qA-------kn~Wa~nr~tRR~ 102 (104)
||+| |++||+||+|||+
T Consensus 380 ah~Ak~rE~ELk~~WS~nkltkR~ 403 (410)
T KOG3903|consen 380 AHDAKHRESELKERWSRNKLTKRE 403 (410)
T ss_pred HHHHHHhHHHHHHHHhhhhHHHHH
Confidence 9999 8999999999996
No 3
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=31.54 E-value=13 Score=25.88 Aligned_cols=38 Identities=5% Similarity=0.271 Sum_probs=31.9
Q ss_pred eEEecCCCCccchHHHHHHHhhcccccccCCCCCCCCC
Q psy10166 34 IVKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNSKHDG 71 (104)
Q Consensus 34 ~iIdV~~dd~l~~~~qwl~K~Ltee~~~~p~s~~~~~~ 71 (104)
+|+++=|.+++.++.++++.+++..+.+--+..+.|+-
T Consensus 48 kFLn~LGteIiEnAVefiLrSMtR~tgF~E~~dk~geh 85 (88)
T PF15144_consen 48 KFLNLLGTEIIENAVEFILRSMTRSTGFMEFEDKQGEH 85 (88)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcccCceecCCCCCCc
Confidence 78888899999999999999999999877766555544
No 4
>PF04487 CITED: CITED; InterPro: IPR007576 CITED, CBP/p300-interacting transactivator with ED-rich tail, is characterised by a conserved 32-amino acid sequence at the C terminus. CITED protein does not bind DNA directly and is thought to function as a transcriptional co-activator [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1R8U_A 1P4Q_A.
Probab=27.95 E-value=25 Score=27.92 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=11.6
Q ss_pred cccccCcccccChHHHHHhh
Q psy10166 4 LRRQDCDFHIVSMSHELRKL 23 (104)
Q Consensus 4 ~~~~~~d~~~iddea~~rL~ 23 (104)
|.-.-.|+++||+|.|..|+
T Consensus 157 ~~~~~~D~d~iDEevL~sLv 176 (214)
T PF04487_consen 157 LPPNVIDTDLIDEEVLMSLV 176 (214)
T ss_dssp ------S-SSS-CCHHHHHH
T ss_pred CCCCCccccccCHHHHHHHH
Confidence 44566899999999999998
No 5
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=26.38 E-value=18 Score=23.40 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=17.2
Q ss_pred cCcccccChHHHHHhhcCCCC
Q psy10166 8 DCDFHIVSMSHELRKLGGRKR 28 (104)
Q Consensus 8 ~~d~~~iddea~~rL~Gkr~R 28 (104)
+|-.|+||+|....++-.|+|
T Consensus 2 GC~~SK~d~eeaV~~CkeRkr 22 (60)
T PF04783_consen 2 GCSQSKLDDEEAVSLCKERKR 22 (60)
T ss_pred CCCcccccCcHHHHHHHHHHH
Confidence 499999999999998865543
No 6
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.45 E-value=52 Score=19.84 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=14.1
Q ss_pred ccChHHHHHhhcCCCCC
Q psy10166 13 IVSMSHELRKLGGRKRK 29 (104)
Q Consensus 13 ~iddea~~rL~Gkr~R~ 29 (104)
|+++|++..|.|.+++.
T Consensus 2 fLT~~El~elTG~k~~~ 18 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPS 18 (47)
T ss_pred CCCHHHHHHHHCCCCHH
Confidence 78999999999976443
No 7
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=21.22 E-value=63 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.2
Q ss_pred cccccChHHHHHhhcC
Q psy10166 10 DFHIVSMSHELRKLGG 25 (104)
Q Consensus 10 d~~~iddea~~rL~Gk 25 (104)
|||..+++.|..|.|+
T Consensus 2 DFsk~sn~EL~kmaG~ 17 (93)
T PF06518_consen 2 DFSKKSNEELIKMAGK 17 (93)
T ss_dssp SSTTS-HHHHHHTTTT
T ss_pred cchhcChHHHHHHHCC
Confidence 8999999999999995
No 8
>PF14190 DUF4313: Domain of unknown function (DUF4313)
Probab=20.61 E-value=1e+02 Score=21.66 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.1
Q ss_pred eEEecCCCCccchHHHHHHH-hhcccccccC
Q psy10166 34 IVKDVDGNSLVSDSQQWLTK-QLSTETTYRP 63 (104)
Q Consensus 34 ~iIdV~~dd~l~~~~qwl~K-~Ltee~~~~p 63 (104)
-|||+|.. |+.-+|+.+ +|++.+.++-
T Consensus 46 afId~n~~---~~~~~fl~~n~Lg~~tg~~~ 73 (105)
T PF14190_consen 46 AFIDTNNN---PDALEFLKRNKLGKPTGRTR 73 (105)
T ss_pred EEEeCCCC---HHHHHHHHHCCCCcccCccc
Confidence 79999988 899999998 7888775443
No 9
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=15.80 E-value=1.5e+02 Score=16.83 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=9.2
Q ss_pred HHHHhhhhhhHhHh
Q psy10166 83 TYLAFQGDNEWTER 96 (104)
Q Consensus 83 TYLA~qAkn~Wa~n 96 (104)
.-||.-|-+.|..|
T Consensus 14 ~elAr~a~dkWR~~ 27 (29)
T PF10562_consen 14 LELARHAADKWRGN 27 (29)
T ss_pred HHHHHHHHHHHHhh
Confidence 45777777777654
No 10
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=14.83 E-value=1.1e+02 Score=20.14 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=11.3
Q ss_pred HHhhcCCCCCCccceEE
Q psy10166 20 LRKLGGRKRKGEDLIVK 36 (104)
Q Consensus 20 ~rL~Gkr~R~~eei~iI 36 (104)
.+-+||++|.+..|+..
T Consensus 43 ~~~LGKGKR~RKqV~y~ 59 (66)
T PF06465_consen 43 EKALGKGKRSRKQVNYA 59 (66)
T ss_pred HHHhccccccccccccc
Confidence 44557887877777544
Done!