Query psy10166
Match_columns 104
No_of_seqs 51 out of 53
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:32:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p4q_A CBP/P300-interacting tr 26.8 31 0.0011 21.0 1.6 21 3-23 5-25 (52)
2 2xrh_A Protein HP0721; unknown 25.3 31 0.0011 23.5 1.6 19 7-25 7-25 (100)
3 2ybf_B E3 ubiquitin-protein li 12.7 85 0.0029 16.7 1.2 18 77-94 4-23 (27)
4 1nzj_A Hypothetical protein YA 11.3 66 0.0022 24.7 0.6 47 37-83 188-237 (298)
5 3v4y_B Nuclear inhibitor of pr 9.7 1.1E+02 0.0037 19.2 1.1 25 13-37 27-51 (62)
6 3seo_A VOPL C terminal domain 9.4 1.3E+02 0.0043 23.4 1.6 15 14-28 97-111 (241)
7 3bp3_A Glucose-specific phosph 7.8 2.3E+02 0.0079 17.6 2.1 22 3-25 29-50 (82)
8 3afh_A Glutamyl-tRNA synthetas 7.5 96 0.0033 25.6 0.2 46 38-83 216-264 (488)
9 1iba_A Glucose permease; phosp 7.5 2.6E+02 0.0088 18.4 2.3 33 3-36 38-72 (101)
10 2iii_A S-adenosylmethionine de 7.4 1.7E+02 0.0059 20.1 1.5 17 7-23 14-30 (135)
No 1
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=26.84 E-value=31 Score=21.01 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=17.8
Q ss_pred ccccccCcccccChHHHHHhh
Q psy10166 3 ALRRQDCDFHIVSMSHELRKL 23 (104)
Q Consensus 3 ~~~~~~~d~~~iddea~~rL~ 23 (104)
|+...-.|+..||+|.+..|+
T Consensus 5 a~~~~~~D~dliDEevLtsLv 25 (52)
T 1p4q_A 5 GSGSNVIDTDFIDEEVLMSLV 25 (52)
T ss_dssp SCCSCCCSCSSSCTTHHHHHH
T ss_pred ccccCccccccccHHHHHHHH
Confidence 455677899999999999997
No 2
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=25.26 E-value=31 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=17.1
Q ss_pred ccCcccccChHHHHHhhcC
Q psy10166 7 QDCDFHIVSMSHELRKLGG 25 (104)
Q Consensus 7 ~~~d~~~iddea~~rL~Gk 25 (104)
-..|||..+|+.|..|.|+
T Consensus 7 ~a~DFSk~Sd~ELl~mAG~ 25 (100)
T 2xrh_A 7 MAKDFSKTSDEDLAKMAGV 25 (100)
T ss_dssp CCCSSTTSCHHHHHHTTTT
T ss_pred cccchhhcCHHHHHHHHCc
Confidence 3579999999999999996
No 3
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=12.75 E-value=85 Score=16.72 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=12.3
Q ss_pred hhhhhhH--HHHhhhhhhHh
Q psy10166 77 KRKHQIT--YLAFQGDNEWT 94 (104)
Q Consensus 77 KRKHQIT--YLA~qAkn~Wa 94 (104)
|+|||=- .|--||++-|.
T Consensus 4 rkkHqneFq~LVDqakk~yk 23 (27)
T 2ybf_B 4 RKKHKSEFQLLVDQARKGYK 23 (27)
T ss_dssp HHHTHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 6788854 57788877664
No 4
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=11.29 E-value=66 Score=24.73 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=20.3
Q ss_pred ecCCCCccch--HHHHHHHhhcccc-cccCCCCCCCCCCChhhhhhhhhH
Q psy10166 37 DVDGNSLVSD--SQQWLTKQLSTET-TYRPSHNSKHDGPTSQQKRKHQIT 83 (104)
Q Consensus 37 dV~~dd~l~~--~~qwl~K~Ltee~-~~~p~s~~~~~~Ps~~~KRKHQIT 83 (104)
.|.|+|++++ .+.|+...|..+. .|.=.+-..+....+++||++..+
T Consensus 188 vIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~~~ 237 (298)
T 1nzj_A 188 IVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPA 237 (298)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC-------------C
T ss_pred EEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCCCcccccCCccC
Confidence 3449999865 4778888887665 333222233445578999998763
No 5
>3v4y_B Nuclear inhibitor of protein phosphatase 1; PP1, Ser/Thr phosphatase, NIPP1, IDP, hydrolase; HET: GOL 15P; 2.10A {Homo sapiens}
Probab=9.69 E-value=1.1e+02 Score=19.19 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=5.7
Q ss_pred ccChHHHHHhhcCCCCCCccceEEe
Q psy10166 13 IVSMSHELRKLGGRKRKGEDLIVKD 37 (104)
Q Consensus 13 ~iddea~~rL~Gkr~R~~eei~iId 37 (104)
-|++....--..||+|+...+.|.|
T Consensus 27 ~i~~~~~~~~~~kRKRk~~~V~F~e 51 (62)
T 3v4y_B 27 TIEEGNLDIQRPKRKRKNSRVTFSE 51 (62)
T ss_dssp CCCC--------------CCCEECS
T ss_pred eecCCcccccccccccccCccccCC
Confidence 4555533222225555544565544
No 6
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein; 2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Probab=9.42 E-value=1.3e+02 Score=23.35 Aligned_cols=15 Identities=33% Similarity=0.202 Sum_probs=11.6
Q ss_pred cChHHHHHhhcCCCC
Q psy10166 14 VSMSHELRKLGGRKR 28 (104)
Q Consensus 14 iddea~~rL~Gkr~R 28 (104)
|=|+|+.||.|+|.|
T Consensus 97 VievAlkRL~~gr~R 111 (241)
T 3seo_A 97 VIDVALKRLQTGRER 111 (241)
T ss_dssp HHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHccCccc
Confidence 447899999998733
No 7
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=7.76 E-value=2.3e+02 Score=17.59 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=17.1
Q ss_pred ccccccCcccccChHHHHHhhcC
Q psy10166 3 ALRRQDCDFHIVSMSHELRKLGG 25 (104)
Q Consensus 3 ~~~~~~~d~~~iddea~~rL~Gk 25 (104)
-||-.=-|.+.+|+++++. .|-
T Consensus 29 RLR~~lkD~~~vd~~~lk~-~Gv 50 (82)
T 3bp3_A 29 RLRVSVADVSKVDQAGLKK-LGA 50 (82)
T ss_dssp EEEEEESCGGGCCHHHHHH-TTC
T ss_pred eEEEEEeCccccCHHHHhc-ccc
Confidence 3566667999999999999 454
No 8
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=7.48 E-value=96 Score=25.61 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=31.0
Q ss_pred cCCCCccch--HHHHHHHhhcccc-cccCCCCCCCCCCChhhhhhhhhH
Q psy10166 38 VDGNSLVSD--SQQWLTKQLSTET-TYRPSHNSKHDGPTSQQKRKHQIT 83 (104)
Q Consensus 38 V~~dd~l~~--~~qwl~K~Ltee~-~~~p~s~~~~~~Ps~~~KRKHQIT 83 (104)
|-|+|.+++ .+.|+.+.|..++ .|--.+-..+...++++||+..++
T Consensus 216 iRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~KLSKR~g~~~ 264 (488)
T 3afh_A 216 FRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGATS 264 (488)
T ss_dssp EEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSSBCCTTTSCCB
T ss_pred EEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCCcccCcCCccc
Confidence 578999976 4889999998765 333222222334578999998754
No 9
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=7.48 E-value=2.6e+02 Score=18.37 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=21.8
Q ss_pred ccccccCcccccChHHHHHhhcCC--CCCCccceEE
Q psy10166 3 ALRRQDCDFHIVSMSHELRKLGGR--KRKGEDLIVK 36 (104)
Q Consensus 3 ~~~~~~~d~~~iddea~~rL~Gkr--~R~~eei~iI 36 (104)
-||-.=-|.+.+|+++++. .|-. -...+.++||
T Consensus 38 RLR~~lkD~s~Vd~~~Lk~-~Gv~GVv~~g~~~QVI 72 (101)
T 1iba_A 38 RLRVSVADVSKVDQAGLKK-LGAAGVVVAGSGVQAI 72 (101)
T ss_dssp EEECBCSTTSSCCHHHHHH-TTSSCEEEETTEEEEE
T ss_pred eEEEEEeCccccCHHHHHh-cCCcEEEEECCEEEEE
Confidence 4666667999999999999 4542 1122356655
No 10
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=7.44 E-value=1.7e+02 Score=20.08 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.3
Q ss_pred ccCcccccChHHHHHhh
Q psy10166 7 QDCDFHIVSMSHELRKL 23 (104)
Q Consensus 7 ~~~d~~~iddea~~rL~ 23 (104)
-+||...++|+++.+-.
T Consensus 14 ygc~~~~L~d~~~l~~~ 30 (135)
T 2iii_A 14 YGVDADKIDRVEDIREL 30 (135)
T ss_dssp ESCCGGGSSSHHHHHHH
T ss_pred eCCChHHCCCHHHHHHH
Confidence 58999999888776544
Done!