RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10166
(104 letters)
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 29.9 bits (68), Expect = 0.18
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 4 LRRQDCDFHIVSMS----HELRKLGGRKRKGEDLIVKDVD 39
L R+ IV +S LR+ G G + I VD
Sbjct: 502 LERRGIQLLIVGLSAQVLRLLRRAGLLYLVGAEHIFDSVD 541
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway.
Length = 409
Score = 29.8 bits (68), Expect = 0.20
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 4 LRRQDCDFHIVSMSHELRKLGGRKRKGED-LIVKDVDGNSLVSDS 47
LR ++ D I +M+ ELRKLG + ED LI++ +
Sbjct: 321 LRVKESD-RIAAMATELRKLGADVEETEDGLIIEGGPLKGAGVEV 364
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
This model represents
3-phosphoshikimate-1-carboxyvinyltransferase (aroA),
which catalyzes the sixth of seven steps in the
shikimate pathway of the biosynthesis of chorimate.
Chorismate is last common precursor of all three
aromatic amino acids. Sequences scoring between the
trusted and noise cutoffs include fragmentary and
aberrant sequences in which generally well-conserved
motifs are missing or altererd, but no example of a
protein known to have a different function [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 409
Score = 29.2 bits (66), Expect = 0.38
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 4 LRRQDCDFHIVSMSHELRKLGGRKRKGED 32
LR ++ D I +++ ELRKLG + ED
Sbjct: 319 LRVKESD-RIAAIAEELRKLGVDVEEFED 346
>gnl|CDD|150859 pfam10253, PRCC_Cterm, Mitotic checkpoint protein PRCC_Cterm.
This is the highly conserved C-terminal domain of the
renal papillary carcinoma protein PRCC. The function of
this domain is not known.
Length = 41
Score = 26.6 bits (59), Expect = 0.52
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 76 QKRKHQITYLAFQ 88
+RKHQITYLA Q
Sbjct: 1 ARRKHQITYLAHQ 13
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 28.1 bits (63), Expect = 0.88
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 13 IVSMSHELRKLGGRKRKGEDLI 34
I +M+ ELRKLG +G D I
Sbjct: 351 IAAMATELRKLGATVEEGADYI 372
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 27.4 bits (60), Expect = 1.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 1 MGALRRQDCDFHIVSMSHELRKLGGRKRKGEDLIV 35
+G+ R ++ D I +M+ ELRK+G +G D +V
Sbjct: 580 IGSWRVKETD-RIAAMATELRKVGATVEEGADYLV 613
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase;
Provisional.
Length = 443
Score = 26.9 bits (60), Expect = 1.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 34 IVKDVDGNSLV 44
IV+DVDGN L+
Sbjct: 49 IVEDVDGNRLI 59
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 26.8 bits (60), Expect = 2.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 4 LRRQDCDFHIVSMSHELRKLGGRKRKGED-LIVK 36
LR ++ D I +M+ ELRKLG + ED LI+
Sbjct: 336 LRVKESD-RIAAMATELRKLGVEVEETEDGLIIT 368
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 26.6 bits (60), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 13 IVSMSHELRKLGGRKRKGED-LIVK 36
I +M+ ELRKLG + ED LI+
Sbjct: 353 IAAMATELRKLGAEVEETEDGLIIT 377
>gnl|CDD|212791 cd11857, SH3_DBS, Src homology 3 domain of DBL's Big Sister
(DBS), a guanine nucleotide exchange factor. DBS, also
called MCF2L (MCF2-transforming sequence-like protein)
or OST, is a Rho GTPase guanine nucleotide exchange
factor (RhoGEF), facilitating the exchange of GDP and
GTP. It was originally isolated from a cDNA screen for
sequences that cause malignant growth. It plays roles
in regulating clathrin-mediated endocytosis and cell
migration through its activation of Rac1 and Cdc42.
Depending on cell type, DBS can also activate RhoA and
RhoG. DBS contains a Sec14-like domain, spectrin-like
repeats, a RhoGEF [or Dbl homology (DH)] domain, a
Pleckstrin homology (PH) domain, and an SH3 domain. SH3
domains are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 24.9 bits (55), Expect = 2.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 26 RKRKGEDLIVKDVDGNSLVS--DSQQWLTKQLSTE 58
K +DL VK D L+ D QWL K LST
Sbjct: 9 EKGGPDDLTVKSGDLVQLIHEGDEGQWLVKNLSTR 43
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 26.3 bits (58), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 35 VKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNSKHDGPTSQQKRKHQ 81
V+ DG+ + D QQWL+ E + K + S Q RK Q
Sbjct: 505 VEPFDGD--LEDYQQWLSDVQKQEN--QTDEAPKENNANSAQARKDQ 547
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase).
Length = 415
Score = 26.1 bits (58), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 4 LRRQDCDFHIVSMSHELRKLGGRKRKGED 32
LR ++ D + +M+ ELRKLG +G D
Sbjct: 331 LRVKETD-RLFAMATELRKLGAEVEEGPD 358
>gnl|CDD|239160 cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD
contains acetylene hydratase (Ahy) and other related
proteins. The acetylene hydratase of Pelobacter
acetylenicus is a tungsten iron-sulfur protein involved
in the fermentation of acetylene to ethanol and acetate.
Members of this CD belong to the molybdopterin_binding
(MopB) superfamily of proteins.
Length = 477
Score = 25.7 bits (57), Expect = 5.4
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 14 VSMSHELRKLGGRKRKGEDLIVKDVDGNSLVSDSQQWL 51
H L KR G LIV D L + + WL
Sbjct: 177 DLQGHWLV--AAMKR-GAKLIVVDPRLTWLAARADLWL 211
>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
Length = 474
Score = 25.5 bits (56), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 10 DFHIVSMSHELRKLGGRKRKG 30
D+H++ + ELRK G R G
Sbjct: 131 DYHLLPFASELRKRGVNNRIG 151
>gnl|CDD|233418 TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This
model describes a family similar to RecD, the
exodeoxyribonuclease V alpha chain of TIGR01447. Members
of this family, however, are not found in a context of
RecB and RecC and are longer by about 200 amino acids at
the amino end. Chlamydia muridarum has both a member of
this family and a RecD [Unknown function, Enzymes of
unknown specificity].
Length = 720
Score = 25.5 bits (56), Expect = 7.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 22 KLGGRKRKGEDLIVKDVDGNSLVSDSQQWLTKQLSTETTYRPSHNS 67
K+ G K+ +D +V D DGN + + L+ T+ S S
Sbjct: 614 KIEGAKQGKKDQVVVDFDGNEVELTRAELFNLTLAYATSIHKSQGS 659
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.397
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,011,737
Number of extensions: 376595
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 20
Length of query: 104
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 35
Effective length of database: 7,877,176
Effective search space: 275701160
Effective search space used: 275701160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)