BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10169
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0R|A Chain A, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0R|B Chain B, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|A Chain A, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|B Chain B, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|C Chain C, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
Length = 442
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 221 SFCLKAKTPELQRECESPPPCEHQWYA-TQWSKCSAKCGTGIQTRKVFCGALDGESIKKV 279
+F + ++ L + C SP +W + W+ CS C G Q R C +G+ KV
Sbjct: 34 AFAYQKRSGGLCQPCRSP-----RWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKV 88
Query: 280 DDSKCDPELKYNATKNCTSSQVCKGHWMS-GPWSKCSKTYGGGTMVSRTARDEVIP 334
+ +L+ + C G W GPW CS T GT R A + P
Sbjct: 89 APGTLEWQLQACEDQQCCPEM---GGWSGWGPWEPCSVTCSKGTRTRRRACNHPAP 141
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 84/228 (36%), Gaps = 26/228 (11%)
Query: 119 RPCEGVDW-LTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPC 177
+PC W L S W C C +G Q R +C + +V P + + + ++ C
Sbjct: 46 QPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQC 105
Query: 178 NLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVC---ATKNGKIYPESFCLKAKTPELQRE 234
W W C C TR C A K G P +++ + Q+
Sbjct: 106 CPEMGGWSGW--GPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQA-QESEACDTQQV 162
Query: 235 CESPPPCEHQWYAT--QWSKCSAKCGTGI----QTRKVFCGALDGESIKKVDDSKCDPEL 288
C + H +AT W+ CSA C G +TR C A E +K C P L
Sbjct: 163 CPT-----HGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAP--EPSQKPPGKPC-PGL 214
Query: 289 KYNATKNCTSSQVCKGHWMSGPW---SKCSKTYG-GGTMVSRTARDEV 332
Y + CT C GPW S C T G G TM RT V
Sbjct: 215 AYE-QRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPV 261
>pdb|3R6B|A Chain A, Crystal Structure Of Thrombospondin-1 Tsr Domains 2 And 3
Length = 153
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 250 WSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQV-CKGHWMS 308
WS CS CG G+ TR C + +++ C+ E + TK C G W
Sbjct: 20 WSSCSVTCGDGVITRIRLCNSPS----PQMNGKPCEGEAR--ETKACKKDACPINGGWGP 73
Query: 309 -GPWSKCSKTYGGGTM 323
PW CS T GGG
Sbjct: 74 WSPWDICSVTCGGGVQ 89
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 190 SEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYA-T 248
S W+ C CG + TR +C + + ++ + + + E + + P W +
Sbjct: 18 SPWSSCSVTCGDGVITRIRLCNSPSPQMNGKP--CEGEARETKACKKDACPINGGWGPWS 75
Query: 249 QWSKCSAKCGTGIQTRKVFC 268
W CS CG G+Q R C
Sbjct: 76 PWDICSVTCGGGVQKRSRLC 95
>pdb|1LSL|A Chain A, Crystal Structure Of The Thrombospondin-1 Type 1 Repeats
Length = 113
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 246 YATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQV-CKG 304
+ + WS CS CG G+ TR C + +++ C+ E + TK C G
Sbjct: 7 HWSPWSSCSVTCGDGVITRIRLCNSPS----PQMNGKPCEGEAR--ETKACKKDACPING 60
Query: 305 HWMS-GPWSKCSKTYGGGTM 323
W PW CS T GGG
Sbjct: 61 GWGPWSPWDICSVTCGGGVQ 80
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 190 SEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYA-T 248
S W+ C CG + TR +C + + ++ + + + E + + P W +
Sbjct: 9 SPWSSCSVTCGDGVITRIRLCNSPSPQMNGKP--CEGEARETKACKKDACPINGGWGPWS 66
Query: 249 QWSKCSAKCGTGIQTRKVFC 268
W CS CG G+Q R C
Sbjct: 67 PWDICSVTCGGGVQKRSRLC 86
>pdb|3VDJ|A Chain A, Crystal Structure Of Circumsporozoite Protein Atsr Domain,
R32 Native Form
pdb|3VDK|A Chain A, Crystal Structure Of Circumsporozoite Protein Atsr Domain,
R32 Platinum-Bound Form
pdb|3VDL|A Chain A, Crystal Structure Of Circumsporozoite Protein Atsr Domain,
P43212 Form
pdb|3VDL|B Chain B, Crystal Structure Of Circumsporozoite Protein Atsr Domain,
P43212 Form
pdb|3VDL|C Chain C, Crystal Structure Of Circumsporozoite Protein Atsr Domain,
P43212 Form
Length = 77
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 247 ATQWSKCSAKCGTGIQTR 264
+T+WS CS CG GIQ R
Sbjct: 23 STEWSPCSVTCGNGIQVR 40
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 71 VVCDHLCGDGKQKRSVKCYRED--KDGHREVVPDSACNEEKPESEKPCNL 118
+V +H C D K R + C E DG + P C ++ S+ NL
Sbjct: 89 IVINHRCADYKDSRGIACIFEGGTSDGRLDWGPHMICRDDTKYSDGTANL 138
>pdb|3EBR|A Chain A, Crystal Structure Of An Rmlc-Like Cupin Protein
(Reut_a0381) From Ralstonia Eutropha Jmp134 At 2.60 A
Resolution
Length = 159
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 25 YYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKR 84
Y + G+WR + AG+V Y +T + P+S A GP +V L
Sbjct: 67 YTVQGSWRYKEHDWVAHAGSVVYETASTRHTPQSAYAEGPDIITFNIVAGEL-------- 118
Query: 85 SVKCYREDKDGHREV-----VPDSACNEEKPESEKPCNLRPCEG 123
Y +DKD V D N K +P +L EG
Sbjct: 119 ---LYLDDKDNIIAVENWKTSXDRYLNYCKAHGIRPKDLSTFEG 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,573,458
Number of Sequences: 62578
Number of extensions: 581959
Number of successful extensions: 1284
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 51
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)