Query psy10169
Match_columns 390
No_of_seqs 423 out of 2214
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:34:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4597|consensus 100.0 2.1E-35 4.5E-40 281.9 17.6 328 17-357 67-505 (560)
2 KOG4597|consensus 99.9 1.1E-23 2.4E-28 201.7 15.4 241 74-326 275-529 (560)
3 KOG3538|consensus 99.7 6.7E-18 1.5E-22 182.2 9.6 171 1-215 639-841 (845)
4 PF05986 ADAM_spacer1: ADAM-TS 99.6 3.2E-16 6.9E-21 128.4 7.0 70 3-73 1-97 (114)
5 KOG3538|consensus 99.4 1.2E-12 2.5E-17 141.8 12.3 73 245-333 768-840 (845)
6 KOG3539|consensus 99.3 4.6E-12 9.9E-17 122.5 6.0 184 124-332 248-483 (508)
7 KOG3539|consensus 99.1 1.3E-10 2.8E-15 112.6 6.0 144 109-272 295-484 (508)
8 smart00209 TSP1 Thrombospondin 98.7 1.6E-08 3.5E-13 70.9 5.0 49 248-303 5-53 (53)
9 smart00209 TSP1 Thrombospondin 98.7 1.2E-08 2.6E-13 71.5 4.4 51 188-242 3-53 (53)
10 PF00090 TSP_1: Thrombospondin 98.5 4.4E-08 9.6E-13 67.4 2.6 46 190-241 4-49 (49)
11 PF00090 TSP_1: Thrombospondin 98.4 2.6E-07 5.6E-12 63.5 3.8 26 305-332 2-27 (49)
12 PTZ00087 thrombosponding-relat 98.3 3.9E-07 8.5E-12 82.6 3.9 49 124-183 231-285 (340)
13 PTZ00087 thrombosponding-relat 98.2 9.5E-07 2E-11 80.1 3.6 48 186-242 232-285 (340)
14 PTZ00441 sporozoite surface pr 97.5 5.6E-05 1.2E-09 77.2 3.0 44 124-184 241-284 (576)
15 PTZ00441 sporozoite surface pr 97.4 0.00012 2.7E-09 74.7 3.7 51 239-308 238-288 (576)
16 KOG1480|consensus 96.4 0.0021 4.5E-08 66.9 2.6 69 304-381 222-293 (909)
17 KOG1480|consensus 96.2 0.0051 1.1E-07 64.1 4.1 82 244-336 223-308 (909)
18 smart00193 PTN Pleiotrophin / 42.2 21 0.00046 26.4 2.1 19 187-207 50-68 (80)
19 PF01091 PTN_MK_C: PTN/MK hepa 37.3 25 0.00055 25.3 1.8 41 128-179 8-48 (63)
20 PF02770 Acyl-CoA_dh_M: Acyl-C 22.3 46 0.001 22.6 1.0 16 17-33 20-35 (52)
21 smart00008 HormR Domain presen 22.1 73 0.0016 23.2 2.1 26 364-389 5-30 (70)
No 1
>KOG4597|consensus
Probab=100.00 E-value=2.1e-35 Score=281.86 Aligned_cols=328 Identities=25% Similarity=0.507 Sum_probs=255.0
Q ss_pred ceeccCccEEEcCCccCCCCeeEEECCEEEEEEeCCCCCCcceeecCCCccceeecC-----------------------
Q psy10169 17 AIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVC----------------------- 73 (390)
Q Consensus 17 Al~~~~g~y~lNg~~~i~~~~~~~~aGt~~~Y~r~~~~~~e~l~~~GP~~e~~~i~~----------------------- 73 (390)
+++|....+|+||+..+.....|+.. +.|.|.. .++|.+.+.+|..+.+.+-.
T Consensus 67 e~~ngek~~~~~g~~~~~ve~r~~~~-~k~~~~g---~~pea~~~~~~~~qq~s~~dif~~~~r~~~~~~~~~eP~~~~~ 142 (560)
T KOG4597|consen 67 ECKNGEKCCYNVGGGLSCVEARVEVG-TKFVPDG---AEPEALCAQFPCSQQGSVCDIFDGQPRCTCIDRCEKEPSFTCA 142 (560)
T ss_pred cccccchhceecCCchhheeeecccc-ceecCCC---CCccchhccCccccccccccccCCCCCcccccccccCCchhhh
Confidence 66666678999999999888888875 8898855 36788888888877764322
Q ss_pred ------------CCCCCCcEEEEEEEEEEecCCCCeeeecCCCCCC---CCCCCCCCCCCCCCCCCccccCCCccccccc
Q psy10169 74 ------------DHLCGDGKQKRSVKCYREDKDGHREVVPDSACNE---EKPESEKPCNLRPCEGVDWLTSEWTGCDHLC 138 (390)
Q Consensus 74 ------------~~~CG~G~q~r~~~C~~~~~~g~~~~v~~~~C~~---~~P~~~~~C~~~~C~~~~W~~~~Ws~CS~tC 138 (390)
+..||+|+|.|.++|+.... ...+++..|+. +.|.....|++-+| +..|.++.|+.||.+|
T Consensus 143 d~~~k~~n~t~cs~aCgKG~q~~iv~C~~~~t---~~~~~~~~cettm~ptpe~e~~c~l~~c-pa~w~vg~wetcS~tC 218 (560)
T KOG4597|consen 143 DDGLKYYNCTMCSEACGKGVQLRIVYCIHGKT---WPRVSPDPCETTMAPTPEFEPSCALVDC-PAEWFVGDWETCSSTC 218 (560)
T ss_pred hcCceecceEehhhhhcCCceeeeEEEecccc---CCCCCCCccccccCCCCCCCCCcccccC-cchhhcccchhhcccc
Confidence 23399999999999997643 34678889988 44555556999999 7899999999999999
Q ss_pred C-CCceEEEEEeeecCCCCCeeecCCCCCCCCCCCCccccCCCCCcccceeec-cccccccccCCCcEEEEEEeeCCCC-
Q psy10169 139 G-DGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTS-EWTGCEEKCGSSLETRTAVCATKNG- 215 (390)
Q Consensus 139 G-~G~q~R~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~~~~C~~~~W~~~-~Ws~CS~sCG~G~~~R~v~C~~~~~- 215 (390)
| .|.|.|.|+|.+...++...++. ..+...+|..+..|++..|+ +|... .|+.||+.||.|+++|.|.|....+
T Consensus 219 g~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~--ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ge 295 (560)
T KOG4597|consen 219 GVQGRQYRVVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICN--EWQADAGWYTCSARCGAGFLRRDVPCSSVKGE 295 (560)
T ss_pred cccCCcCceeeeehhhccccceeec-CccccCCcceeeeeeEEEcc--hhhcCCCceeeccccccceeeccceeeeeccc
Confidence 9 79999999999886666555544 55677788999999999998 79666 9999999999999999999975322
Q ss_pred ---ccccCCcccCC--------------------------------------------------------------CCCc
Q psy10169 216 ---KIYPESFCLKA--------------------------------------------------------------KTPE 230 (390)
Q Consensus 216 ---~~~~~~~C~~~--------------------------------------------------------------~~p~ 230 (390)
..++...++.. ++|.
T Consensus 296 ~a~daads~p~~~~~~~~e~~~cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~pa 375 (560)
T KOG4597|consen 296 GALDAADSCPADEQEKPAECLTCDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRPA 375 (560)
T ss_pred ccccccccCCcccccCchhhcCCCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCCc
Confidence 11111111111 3455
Q ss_pred cccccCCCCCCC--CCccccCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCccc
Q psy10169 231 LQRECESPPPCE--HQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMS 308 (390)
Q Consensus 231 ~~~~C~~~~~C~--~~W~~s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp~~W~~ 308 (390)
..++|.. .||+ ++|.+++|++|+..||+|.+.|.+.|+...+..+..++.+.|...++|...+.|... +|...|+.
T Consensus 376 d~~pc~~-GPC~~e~rW~~s~wsqCs~eCg~g~~~r~vica~~~a~~f~v~~p~~ca~~~r~~~~~s~~~~-~c~~~w~s 453 (560)
T KOG4597|consen 376 DTRPCAQ-GPCPCEPRWAYSPWSQCSGECGGGGNNREVICACEQACPFEVVDPSCCACLPRPKLTQSCCRS-DCTITWRS 453 (560)
T ss_pred ccccccc-CCCCCccceeecchhhhccccCCCCcceeEEEeeecCCCcccCCcccccccCCcccccccccc-ccceeeee
Confidence 5566666 6665 478889999999999999999999999888887777788999999899999999887 79999999
Q ss_pred cCCcccccccCCCEEEEEecCCCC--CCCCCCCcccCCcc-ccccccccccc
Q psy10169 309 GPWSKCSKTYGGGTMVSRTARDEV--IPVEPTGKVAEADE-EEECEEEEEEG 357 (390)
Q Consensus 309 s~Ws~CS~tCG~G~q~R~r~c~~~--~~~~~~~~~~~~~~-~~~C~~~~~~~ 357 (390)
++||+|+++||+|.|.|.+.|-.- .++.....+...-+ ...|...+|.+
T Consensus 454 Tewsec~~scgGgaqvr~~~cL~ddkm~L~~lc~~~Lkps~k~~cna~pCp~ 505 (560)
T KOG4597|consen 454 TEWSECPASCGGGAQVRVVVCLKDDKMGLKFLCDEQLKPSEKQDCNACPCPN 505 (560)
T ss_pred cccccCchhcCCcceEeeeeecccCcccccccCccccChhhcCCCCCCCCCC
Confidence 999999999999999999977433 33333332222222 23688777774
No 2
>KOG4597|consensus
Probab=99.91 E-value=1.1e-23 Score=201.73 Aligned_cols=241 Identities=29% Similarity=0.655 Sum_probs=191.4
Q ss_pred CCCCCCcEEEEEEEEEEecCCCCeeeecCCCCCC-CCCCCCCCCCCCCCCCCccccCCCc-ccccccCCCceEEEEEeee
Q psy10169 74 DHLCGDGKQKRSVKCYREDKDGHREVVPDSACNE-EKPESEKPCNLRPCEGVDWLTSEWT-GCDHLCGDGKQKRSVKCYR 151 (390)
Q Consensus 74 ~~~CG~G~q~r~~~C~~~~~~g~~~~v~~~~C~~-~~P~~~~~C~~~~C~~~~W~~~~Ws-~CS~tCG~G~q~R~~~C~~ 151 (390)
++-||.|+++|.|.|......+....+++.-++. .+|.+.+.|+++|| ...|...+|+ .+++-||.++++|.|.|..
T Consensus 275 s~rcg~g~~~rdv~c~s~~ge~a~daads~p~~~~~~~~e~~~cdmgpC-~g~~f~tew~~~~~aqcg~~~~~rsv~C~~ 353 (560)
T KOG4597|consen 275 SARCGAGFLRRDVPCSSVKGEGALDAADSCPADEQEKPAECLTCDMGPC-TGLTFVTEWSWHLDAQCGDCETTRSVVCKG 353 (560)
T ss_pred ccccccceeeccceeeeecccccccccccCCcccccCchhhcCCCCccc-CCccchhhhhhhcccccCCceeeeeeeecC
Confidence 4459999999999998764333333455555555 78888888999999 5668777998 6999999999999999987
Q ss_pred cCCCCCeeecCCCCC-----CCCCCCCccccCCCCCc-ccceeeccccccccccCCCcEEEEEEeeCCCC---ccccCCc
Q psy10169 152 EDKDGHREVVPDSAC-----NEEKPESEKPCNLRPCE-GVDWLTSEWTGCEEKCGSSLETRTAVCATKNG---KIYPESF 222 (390)
Q Consensus 152 ~~~~g~~~~v~~~~C-----~~~~P~~~~~C~~~~C~-~~~W~~~~Ws~CS~sCG~G~~~R~v~C~~~~~---~~~~~~~ 222 (390)
.. ++. .+-..| .+++|...++|...||+ .++|.+++|++|+..||+|.+.|.+.|...+. .+++...
T Consensus 354 s~--~~~--~p~E~C~~a~~sg~~pad~~pc~~GPC~~e~rW~~s~wsqCs~eCg~g~~~r~vica~~~a~~f~v~~p~~ 429 (560)
T KOG4597|consen 354 SQ--GRF--EPLEACLVACASGPRPADTRPCAQGPCPCEPRWAYSPWSQCSGECGGGGNNREVICACEQACPFEVVDPSC 429 (560)
T ss_pred cc--ccc--cchhhhhhhccCCCCCccccccccCCCCCccceeecchhhhccccCCCCcceeEEEeeecCCCcccCCccc
Confidence 62 211 122344 66889999999999997 35789999999999999999999999986433 2346778
Q ss_pred ccCCCCCccccccCCCCCCCCCccccCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy10169 223 CLKAKTPELQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVC 302 (390)
Q Consensus 223 C~~~~~p~~~~~C~~~~~C~~~W~~s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~C 302 (390)
|..+++|..++.|.. .+|...|+.++||+|+++||+|.|.|.+.|+..+-.. -...|+...+|.+.+.|+.. +|
T Consensus 430 ca~~~r~~~~~s~~~-~~c~~~w~sTewsec~~scgGgaqvr~~~cL~ddkm~----L~~lc~~~Lkps~k~~cna~-pC 503 (560)
T KOG4597|consen 430 CACLPRPKLTQSCCR-SDCTITWRSTEWSECPASCGGGAQVRVVVCLKDDKMG----LKFLCDEQLKPSEKQDCNAC-PC 503 (560)
T ss_pred ccccCCccccccccc-cccceeeeecccccCchhcCCcceEeeeeecccCccc----ccccCccccChhhcCCCCCC-CC
Confidence 888889999999999 9999999999999999999999999999999755321 24679988899999999997 79
Q ss_pred CCCccccCCccc---ccccCCCEEEEE
Q psy10169 303 KGHWMSGPWSKC---SKTYGGGTMVSR 326 (390)
Q Consensus 303 p~~W~~s~Ws~C---S~tCG~G~q~R~ 326 (390)
| .-..|+...| ++-||.-++.|-
T Consensus 504 p-~~~dse~~~c~d~~~~~~~~v~~~~ 529 (560)
T KOG4597|consen 504 P-NCVDSEFPLCIDGSVFCGVAVLARL 529 (560)
T ss_pred C-CcccCcCCccccCCcccCeEEeccc
Confidence 8 3444788887 556776666553
No 3
>KOG3538|consensus
Probab=99.73 E-value=6.7e-18 Score=182.20 Aligned_cols=171 Identities=34% Similarity=0.707 Sum_probs=134.6
Q ss_pred CCeEeeccccccccc-c--------------------------ceeccC-ccEEEcCCccCCCCeeEEECCEEEEEEeCC
Q psy10169 1 MCQTLRGVLDNNDMQ-V--------------------------AIRNMS-GHYYLNGNWRIDYPKPLWFAGTVFYYERNT 52 (390)
Q Consensus 1 ~C~~v~g~f~~~~~~-~--------------------------Al~~~~-g~y~lNg~~~i~~~~~~~~aGt~~~Y~r~~ 52 (390)
+|++|+|+|+..... | |||+.. ++|+|||+|.|++++.+..+|+++.|.+..
T Consensus 639 ~c~~~~g~~~~~~~~~y~~v~~ip~~a~~i~v~~~~~~~~~~~a~k~~~~~~~~~n~~~~i~~~~~~~~~g~~~~~~~~~ 718 (845)
T KOG3538|consen 639 SCKTVSGTFNPSSKAGYNKVVEIPAGASHIRVRECLCGSPHYLALKSSDCGKYSLNGRWQIQWPSEFCCAGTTRRYSRRP 718 (845)
T ss_pred cCceeeCCcccccCCccceeEEEeCCCceeeeeccccccccchhhhccCcCccccCCCccccccCccccccceeeeccCc
Confidence 589999999987643 2 788776 899999999999999999999999999983
Q ss_pred CCCCcceeecCCCccceeecCCCC----CCCcEEEEEEEEEEecCCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy10169 53 FYAPESISALGPTTEPLYVVCDHL----CGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLT 128 (390)
Q Consensus 53 ~~~~e~l~~~GP~~e~~~i~~~~~----CG~G~q~r~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~~~~C~~~~W~~ 128 (390)
...|.|.+.||+.+++++++... +..++++... +.. + ..+ .....|.+
T Consensus 719 -~~~e~l~~~gp~~~~~~~~vl~~~~~~~~~~~~~~~~--~~~--~-------------~~~----------~~~~~w~~ 770 (845)
T KOG3538|consen 719 -NTPESLEASGPLPETLTVQVLVQGDTVPNPGVRYEFT--VPK--D-------------TEP----------RRQYTWAH 770 (845)
T ss_pred -ccceecccCCCcCCCceEEEEEecCCCCCCccceEEE--ccc--C-------------CCc----------ccceeeec
Confidence 56899999999999999877221 1123332222 110 0 000 11357889
Q ss_pred CCCcccccccCCCceEEEEEeeecCCCCCeeecCCCCCCCCCCCCccccCCCCCcccceeeccccccccccCCCcEEEEE
Q psy10169 129 SEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCEEKCGSSLETRTA 208 (390)
Q Consensus 129 ~~Ws~CS~tCG~G~q~R~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~~~~C~~~~W~~~~Ws~CS~sCG~G~~~R~v 208 (390)
+.|++||++||+|+|.|.+.|.+.. + . ....+.|+..+|+ ..|.+++|++||++||.|++.|.|
T Consensus 771 ~~w~~Cs~~cg~g~~~~~~~C~~~~------------~-~--~~~~~~C~~~~c~-~~w~~~~w~~Cs~~cg~g~~~r~v 834 (845)
T KOG3538|consen 771 GPWSECSASCGGGVQSRKVSCRRTF------------D-E--VPRWRKCNLQPCP-PRWVAGEWSECSRTCGSGLRARSV 834 (845)
T ss_pred CCccccccccCCCceecccceeecc------------c-c--CccccccCCCCCC-CcceecCCchhhhhhcCccccccc
Confidence 9999999999999999999998762 1 1 2578899999994 589999999999999999999999
Q ss_pred EeeCCCC
Q psy10169 209 VCATKNG 215 (390)
Q Consensus 209 ~C~~~~~ 215 (390)
.|....+
T Consensus 835 ~C~~~~~ 841 (845)
T KOG3538|consen 835 ACRDSNG 841 (845)
T ss_pred ccccccC
Confidence 9987654
No 4
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases []. A cellular disintegrin and metalloproteinase (ADAM) is a family of genes with structural homology to the snake venom metalloproteinases and disintegrins []. There is variation amongst members of the family, however, all have a similar domain organisation comprising a preproregion, a reprolysin-type catalytic domain, a disintegrin-like domain, a thrombospondin type-1 (TS) module, a cysteine-rich domain, a spacer domain without cysteine residues, and a COOH-terminal TS module [, ]. They are involved in embryogenesis and have been implicated in some cancers and inflammatory diseases [].; GO: 0004222 metalloendopeptidase activity, 0031012 extracellular matrix
Probab=99.64 E-value=3.2e-16 Score=128.41 Aligned_cols=70 Identities=40% Similarity=0.663 Sum_probs=64.5
Q ss_pred eEeeccccccc--ccc-------------------------ceeccCccEEEcCCccCCCCeeEEECCEEEEEEeCCCCC
Q psy10169 3 QTLRGVLDNND--MQV-------------------------AIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYA 55 (390)
Q Consensus 3 ~~v~g~f~~~~--~~~-------------------------Al~~~~g~y~lNg~~~i~~~~~~~~aGt~~~Y~r~~~~~ 55 (390)
|+|+|+|++.. .+| |||+.+|+|+|||+|.|++++.|.+|||+|.|+|.. ..
T Consensus 1 k~V~G~f~~~~~~~gY~~v~~IP~GA~nI~I~e~~~s~n~Lalk~~~g~y~lNg~~~i~~~~~~~~aGt~~~Y~~~~-~~ 79 (114)
T PF05986_consen 1 KTVSGTFNESRLGYGYNKVVTIPAGARNIRITERRPSSNYLALKNSDGKYVLNGNWVISWPGTYSVAGTTFEYSRSD-DN 79 (114)
T ss_pred CEEEeEeCCCCCCCCceEEEECCCCceEEEEEEeecCccEEEEEecCCcEEEcCCccccCCcCEEeCCeEEEEEecC-CC
Confidence 68999999988 333 999999999999999999999999999999999983 56
Q ss_pred CcceeecCCCccceeecC
Q psy10169 56 PESISALGPTTEPLYVVC 73 (390)
Q Consensus 56 ~e~l~~~GP~~e~~~i~~ 73 (390)
.|.|++.|||+|+|+||+
T Consensus 80 ~E~i~~~GPl~e~l~v~v 97 (114)
T PF05986_consen 80 LERITAPGPLTEDLIVQV 97 (114)
T ss_pred CEEEEcCCCCCCCEEEEE
Confidence 899999999999999998
No 5
>KOG3538|consensus
Probab=99.41 E-value=1.2e-12 Score=141.80 Aligned_cols=73 Identities=36% Similarity=0.786 Sum_probs=62.9
Q ss_pred ccccCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCccccCCcccccccCCCEEE
Q psy10169 245 WYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMV 324 (390)
Q Consensus 245 W~~s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp~~W~~s~Ws~CS~tCG~G~q~ 324 (390)
|..+.|++||++||+|.|.|.+.|..... . ....+.|+.. +|+..|..++|++||++||.|++.
T Consensus 768 w~~~~w~~Cs~~cg~g~~~~~~~C~~~~~---------~------~~~~~~C~~~-~c~~~w~~~~w~~Cs~~cg~g~~~ 831 (845)
T KOG3538|consen 768 WAHGPWSECSASCGGGVQSRKVSCRRTFD---------E------VPRWRKCNLQ-PCPPRWVAGEWSECSRTCGSGLRA 831 (845)
T ss_pred eecCCccccccccCCCceecccceeeccc---------c------CccccccCCC-CCCCcceecCCchhhhhhcCcccc
Confidence 77789999999999999999999986331 1 3577889987 687789999999999999999999
Q ss_pred EEecCCCCC
Q psy10169 325 SRTARDEVI 333 (390)
Q Consensus 325 R~r~c~~~~ 333 (390)
|.+.|....
T Consensus 832 r~v~C~~~~ 840 (845)
T KOG3538|consen 832 RSVACRDSN 840 (845)
T ss_pred ccccccccc
Confidence 999997653
No 6
>KOG3539|consensus
Probab=99.27 E-value=4.6e-12 Score=122.47 Aligned_cols=184 Identities=26% Similarity=0.435 Sum_probs=109.3
Q ss_pred Cccc--cCCCcccccccCCCceEEEEEeeecCCCCCeeecCCCCCCC----CCCCCccccCCCCCcccceeecccccccc
Q psy10169 124 VDWL--TSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNE----EKPESEKPCNLRPCEGVDWLTSEWTGCEE 197 (390)
Q Consensus 124 ~~W~--~~~Ws~CS~tCG~G~q~R~~~C~~~~~~g~~~~v~~~~C~~----~~P~~~~~C~~~~C~~~~W~~~~Ws~CS~ 197 (390)
|.|. +++|..|+..|+-+.+.+...-.-. .|. -+...+.. ..|.+...+-+.++|.--| ++|..+..
T Consensus 248 PDW~vGv~sldLC~~~csW~e~~~~~L~P~D--AGT---DsG~ty~spn~pteP~~~i~~ITs~~p~~P~--s~FY~pks 320 (508)
T KOG3539|consen 248 PDWVVGVSSLDLCLGDCSWGEKKTHELYPWD--AGT---DSGFTYMSPNSPTEPQDVIYRITSPYPLHPA--SPFYDPKS 320 (508)
T ss_pred CceEEeechhhhccCCCcchhhceeeecccc--cCC---CCCccccCCCCCCCCCCCceEeccCCCCCCc--ccccCccc
Confidence 5584 6999999999999887766543322 121 11123422 2344555566667774334 89999999
Q ss_pred ccCCCcEEEEEEeeCCCCccccCCcccCCCCCccccccCC----------CCCCC-CCccccCCcCCCcccCCCeEEEEE
Q psy10169 198 KCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECES----------PPPCE-HQWYATQWSKCSAKCGTGIQTRKV 266 (390)
Q Consensus 198 sCG~G~~~R~v~C~~~~~~~~~~~~C~~~~~p~~~~~C~~----------~~~C~-~~W~~s~Ws~CS~tCG~G~q~R~~ 266 (390)
.|+.++.++++.=... -+..|.... .+...|.. ...|. ..| +.|++|+++||.|.+.|.|
T Consensus 321 ~~lpplAt~~l~r~~~-----~e~nc~edd--~~~~~~~~~~~~~~~~e~p~eC~vs~w--s~Ws~C~~sCGkg~r~R~R 391 (508)
T KOG3539|consen 321 KCLPPLATVQLRRKKL-----YELNCNEDD--EQAEKCMNPTHLSAEHETPLECEVSEW--SQWSECSKSCGKGIRIRIR 391 (508)
T ss_pred ccCCchhhhhHHHhhh-----hhhccCcch--HHHhhhcCccccccccCCcccceeccc--ccchhhhhccCCCceEEEE
Confidence 9999987766543221 122343311 11111111 02342 378 9999999999999999998
Q ss_pred EeecCCCCCccccCCCCCCCCCCCCccccCCCCC----------------------------------CCC-CCccccCC
Q psy10169 267 FCGALDGESIKKVDDSKCDPELKYNATKNCTSSQ----------------------------------VCK-GHWMSGPW 311 (390)
Q Consensus 267 ~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~----------------------------------~Cp-~~W~~s~W 311 (390)
.=++.... ...+.|. .+.+.+.|.... .|. ..| ++|
T Consensus 392 ~yv~p~~a----~~~~~~p---e~~e~~~Cva~~c~~a~~~~~~~~~e~~e~~~~~~a~~~~~s~~~~~Cr~s~W--s~W 462 (508)
T KOG3539|consen 392 AYVNPIPA----SNGSCCP---ELVEEKKCVAKKCECAPSIQKLRNREAAESRRSENARKPSDSEQFPGCRVSPW--SEW 462 (508)
T ss_pred EEeccccc----ccCCCCc---chhhhhhcccccccccchhhhhhhhhhhhccchhhccCCCCcccCCCCccccc--chh
Confidence 55543221 1122222 133444444331 121 358 899
Q ss_pred cccccccCCCEEEEEecCCCC
Q psy10169 312 SKCSKTYGGGTMVSRTARDEV 332 (390)
Q Consensus 312 s~CS~tCG~G~q~R~r~c~~~ 332 (390)
|+||++||.|+++|.|+-.+.
T Consensus 463 seCs~sCG~G~~~R~rt~~n~ 483 (508)
T KOG3539|consen 463 SECSKSCGGGIMERYRTVLNH 483 (508)
T ss_pred hhhhhhcCCcceehhhhhhcc
Confidence 999999999999999955443
No 7
>KOG3539|consensus
Probab=99.08 E-value=1.3e-10 Score=112.60 Aligned_cols=144 Identities=22% Similarity=0.429 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccccccCCCceEEEEEeeecCCCCCeeecCCCCCCCCCC-----------CCcccc
Q psy10169 109 KPESEKPCNLRPCEGVDWLTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKP-----------ESEKPC 177 (390)
Q Consensus 109 ~P~~~~~C~~~~C~~~~W~~~~Ws~CS~tCG~G~q~R~~~C~~~~~~g~~~~v~~~~C~~~~P-----------~~~~~C 177 (390)
.|.+...+-+.++....| ++|..++..|+.++.++++.=.+. ....|....+ .+...+
T Consensus 295 eP~~~i~~ITs~~p~~P~--s~FY~pks~~lpplAt~~l~r~~~---------~e~nc~edd~~~~~~~~~~~~~~~~e~ 363 (508)
T KOG3539|consen 295 EPQDVIYRITSPYPLHPA--SPFYDPKSKCLPPLATVQLRRKKL---------YELNCNEDDEQAEKCMNPTHLSAEHET 363 (508)
T ss_pred CCCCCceEeccCCCCCCc--ccccCcccccCCchhhhhHHHhhh---------hhhccCcchHHHhhhcCccccccccCC
Confidence 344555566667732345 999999999999987776543322 1123422110 011111
Q ss_pred CCCCCcccceeeccccccccccCCCcEEEEEEeeCCCCccccCCcccCCCCCccccccCC--------------------
Q psy10169 178 NLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECES-------------------- 237 (390)
Q Consensus 178 ~~~~C~~~~W~~~~Ws~CS~sCG~G~~~R~v~C~~~~~~~~~~~~C~~~~~p~~~~~C~~-------------------- 237 (390)
- ..|...+| +.|++|+++||.|+|.|.+.=+++... ....|.. .+.+.+.|..
T Consensus 364 p-~eC~vs~w--s~Ws~C~~sCGkg~r~R~R~yv~p~~a--~~~~~~p--e~~e~~~Cva~~c~~a~~~~~~~~~e~~e~ 436 (508)
T KOG3539|consen 364 P-LECEVSEW--SQWSECSKSCGKGIRIRIRAYVNPIPA--SNGSCCP--ELVEEKKCVAKKCECAPSIQKLRNREAAES 436 (508)
T ss_pred c-ccceeccc--ccchhhhhccCCCceEEEEEEeccccc--ccCCCCc--chhhhhhcccccccccchhhhhhhhhhhhc
Confidence 1 24665567 999999999999999999955543211 1111111 2222223322
Q ss_pred --------------CCCCC-CCccccCCcCCCcccCCCeEEEEEEeecCC
Q psy10169 238 --------------PPPCE-HQWYATQWSKCSAKCGTGIQTRKVFCGALD 272 (390)
Q Consensus 238 --------------~~~C~-~~W~~s~Ws~CS~tCG~G~q~R~~~C~~~~ 272 (390)
++.|. ..| ++||+||++||.|++.|.|+-++..
T Consensus 437 ~~~~~a~~~~~s~~~~~Cr~s~W--s~WseCs~sCG~G~~~R~rt~~n~~ 484 (508)
T KOG3539|consen 437 RRSENARKPSDSEQFPGCRVSPW--SEWSECSKSCGGGIMERYRTVLNHF 484 (508)
T ss_pred cchhhccCCCCcccCCCCccccc--chhhhhhhhcCCcceehhhhhhccc
Confidence 02242 268 9999999999999999999887643
No 8
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=98.74 E-value=1.6e-08 Score=70.87 Aligned_cols=49 Identities=33% Similarity=0.711 Sum_probs=41.1
Q ss_pred cCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy10169 248 TQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCK 303 (390)
Q Consensus 248 s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp 303 (390)
++|++||++||.|+|+|.|.|...... ++...|.+..+ +.+.|+.. +||
T Consensus 5 s~Ws~Cs~tCg~G~~~R~r~c~~~~~~----~~~~~C~~~~~--~~~~C~~~-~C~ 53 (53)
T smart00209 5 SEWSPCSVTCGGGVQTRTRSCCSPPPQ----NGGGPCTGEDV--ETRACNEQ-PCP 53 (53)
T ss_pred cCcccccCCCCCCeEEEEEecCCCCCC----CCCCcCcCCCC--EEeecCCC-CCc
Confidence 999999999999999999999875543 46788987543 88999997 685
No 9
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=98.74 E-value=1.2e-08 Score=71.53 Aligned_cols=51 Identities=29% Similarity=0.662 Sum_probs=41.9
Q ss_pred eeccccccccccCCCcEEEEEEeeCCCCccccCCcccCCCCCccccccCCCCCCC
Q psy10169 188 LTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCE 242 (390)
Q Consensus 188 ~~~~Ws~CS~sCG~G~~~R~v~C~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~C~ 242 (390)
.|++|++||++||.|+|.|.|.|....+. ++...|.+..+ +.+.|+. .+|+
T Consensus 3 ~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~-~~~~~C~~~~~--~~~~C~~-~~C~ 53 (53)
T smart00209 3 EWSEWSPCSVTCGGGVQTRTRSCCSPPPQ-NGGGPCTGEDV--ETRACNE-QPCP 53 (53)
T ss_pred CccCcccccCCCCCCeEEEEEecCCCCCC-CCCCcCcCCCC--EEeecCC-CCCc
Confidence 45999999999999999999999876544 56788987433 7889998 7875
No 10
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=98.55 E-value=4.4e-08 Score=67.42 Aligned_cols=46 Identities=33% Similarity=0.764 Sum_probs=35.4
Q ss_pred ccccccccccCCCcEEEEEEeeCCCCccccCCcccCCCCCccccccCCCCCC
Q psy10169 190 SEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPC 241 (390)
Q Consensus 190 ~~Ws~CS~sCG~G~~~R~v~C~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~C 241 (390)
++||+||++||.|+++|.|.|... ...+..|.+ ...+++.|+. .+|
T Consensus 4 s~Ws~CS~tCg~G~~~R~r~c~~~---~~~~~~C~~--~~~~~~~C~~-~~C 49 (49)
T PF00090_consen 4 SEWSPCSATCGGGVQTRTRTCQSP---PDGGESCPG--PDQETRPCNM-QPC 49 (49)
T ss_dssp SS--SSSSSSSSEEEEEEECSCTT---BTTSSTCHS--CSEEEEEEEC-SSS
T ss_pred CcCCCCccccccCCceeEEEECcc---cCCCCCCCC--CCcCcCccCc-CcC
Confidence 999999999999999999999986 335677877 3334788877 666
No 11
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=98.42 E-value=2.6e-07 Score=63.52 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=22.4
Q ss_pred CccccCCcccccccCCCEEEEEecCCCC
Q psy10169 305 HWMSGPWSKCSKTYGGGTMVSRTARDEV 332 (390)
Q Consensus 305 ~W~~s~Ws~CS~tCG~G~q~R~r~c~~~ 332 (390)
.| ++||+||++||.|+|+|.|.|...
T Consensus 2 ~W--s~Ws~CS~tCg~G~~~R~r~c~~~ 27 (49)
T PF00090_consen 2 EW--SEWSPCSATCGGGVQTRTRTCQSP 27 (49)
T ss_dssp SB--SS--SSSSSSSSEEEEEEECSCTT
T ss_pred cc--CcCCCCccccccCCceeEEEECcc
Confidence 58 899999999999999999999876
No 12
>PTZ00087 thrombosponding-related protein; Provisional
Probab=98.33 E-value=3.9e-07 Score=82.56 Aligned_cols=49 Identities=29% Similarity=0.742 Sum_probs=39.0
Q ss_pred Cccc-cCCCcccccccC--CCceEEEEEeeecCCCCCeeecCCCCCC-CCCCCCccccCCC--CCc
Q psy10169 124 VDWL-TSEWTGCDHLCG--DGKQKRSVKCYREDKDGHREVVPDSACN-EEKPESEKPCNLR--PCE 183 (390)
Q Consensus 124 ~~W~-~~~Ws~CS~tCG--~G~q~R~~~C~~~~~~g~~~~v~~~~C~-~~~P~~~~~C~~~--~C~ 183 (390)
+.|. |++|++||++|| +|+|+|.|.|.++ . ..|. +.. .+++.|+.. ||+
T Consensus 231 ~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNP--g--------GdC~~G~s-~ETr~CN~~cPPCp 285 (340)
T PTZ00087 231 MFYTEWGEWSNCSMECDHPDNVQIRERKCAHP--S--------GDCFKGDL-KETRPCQVPLPPCN 285 (340)
T ss_pred CCCCCCCCCCCcCcccCCCCCeEeEEEeCCCC--C--------CCCCCCch-hhcccccCCCCCCC
Confidence 5684 899999999999 6999999999765 1 2584 543 688999975 676
No 13
>PTZ00087 thrombosponding-related protein; Provisional
Probab=98.21 E-value=9.5e-07 Score=80.13 Aligned_cols=48 Identities=27% Similarity=0.728 Sum_probs=39.1
Q ss_pred ce-eeccccccccccC--CCcEEEEEEeeCCCCccccCCccc-CCCCCccccccCCCC--CCC
Q psy10169 186 DW-LTSEWTGCEEKCG--SSLETRTAVCATKNGKIYPESFCL-KAKTPELQRECESPP--PCE 242 (390)
Q Consensus 186 ~W-~~~~Ws~CS~sCG--~G~~~R~v~C~~~~~~~~~~~~C~-~~~~p~~~~~C~~~~--~C~ 242 (390)
.| .|++||.||++|| .|+|+|.|.|.++. ..|. + ...+++.|+. . +|+
T Consensus 232 ~WSeWSeWS~CSkTCGgggGVQtRtRtCTNPg------GdC~~G--~s~ETr~CN~-~cPPCp 285 (340)
T PTZ00087 232 FYTEWGEWSNCSMECDHPDNVQIRERKCAHPS------GDCFKG--DLKETRPCQV-PLPPCN 285 (340)
T ss_pred CCCCCCCCCCcCcccCCCCCeEeEEEeCCCCC------CCCCCC--chhhcccccC-CCCCCC
Confidence 67 7899999999999 69999999998763 2684 5 5568889997 4 675
No 14
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.52 E-value=5.6e-05 Score=77.17 Aligned_cols=44 Identities=32% Similarity=0.754 Sum_probs=35.2
Q ss_pred CccccCCCcccccccCCCceEEEEEeeecCCCCCeeecCCCCCCCCCCCCccccCCCCCcc
Q psy10169 124 VDWLTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEG 184 (390)
Q Consensus 124 ~~W~~~~Ws~CS~tCG~G~q~R~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~~~~C~~ 184 (390)
..| ++||+||+|||.|+|+|+|.|... .|... ..+.|++..|+.
T Consensus 241 ~~W--s~Ws~Cs~tCg~G~~~R~R~~~~~------------~C~~~---~~~~C~~~~Cp~ 284 (576)
T PTZ00441 241 GPW--DEWTPCSVTCGKGTHSRSRPILHE------------GCTTH---MVEECEEEECPV 284 (576)
T ss_pred CCC--CCCCCCccccCCCceeeeecccCC------------CCcch---hhhccccCCCCC
Confidence 456 999999999999999999999632 36432 368898888983
No 15
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.39 E-value=0.00012 Score=74.69 Aligned_cols=51 Identities=24% Similarity=0.651 Sum_probs=39.5
Q ss_pred CCCCCCccccCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCccc
Q psy10169 239 PPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMS 308 (390)
Q Consensus 239 ~~C~~~W~~s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp~~W~~ 308 (390)
..|. .| ++||+||+|||.|+|+|+|.|.. ..|... .++.|... .||..+..
T Consensus 238 a~c~-~W--s~Ws~Cs~tCg~G~~~R~R~~~~-----------~~C~~~----~~~~C~~~-~Cp~~~~p 288 (576)
T PTZ00441 238 ASCG-PW--DEWTPCSVTCGKGTHSRSRPILH-----------EGCTTH----MVEECEEE-ECPVEPEP 288 (576)
T ss_pred ccCC-CC--CCCCCCccccCCCceeeeecccC-----------CCCcch----hhhccccC-CCCCCCCC
Confidence 4563 68 99999999999999999999963 237542 36889887 69876643
No 16
>KOG1480|consensus
Probab=96.36 E-value=0.0021 Score=66.87 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=56.0
Q ss_pred CCccc-cCCcccccccCCCEEEEEecCCCCCCCCCCCcccCCccccccccccccccccccCC--CCCCccccccccCCCc
Q psy10169 304 GHWMS-GPWSKCSKTYGGGTMVSRTARDEVIPVEPTGKVAEADEEEECEEEEEEGEETVNND--TDEWTVDYVWTQLNGY 380 (390)
Q Consensus 304 ~~W~~-s~Ws~CS~tCG~G~q~R~r~c~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~--~~~ws~ws~W~~~~~~ 380 (390)
+.|.. ++|+-|.+.||.|+|.|.|+|.++.|++. .. .|++.++...+|.+.+ .+.|+-|+.|..|...
T Consensus 222 ggwsswt~w~~c~~rc~~~~q~rtrtc~npApln~-------G~--~c~g~s~~~~~c~~~c~~dg~w~~ws~ws~c~~~ 292 (909)
T KOG1480|consen 222 GGWSEWTEWSTCNVRCGRGHQKRTRTCTNPAPLNG-------GA--FCEGESVQKISCTVLCPVDGGWSSWSDWSACSSE 292 (909)
T ss_pred CcccccccceeeeecccccccccCCCCCCccccCC-------cc--cccccccccccCcccccccCceeehhhhhhccCc
Confidence 45655 88999999999999999999999988763 23 3777777777777766 8999999999999654
Q ss_pred e
Q psy10169 381 S 381 (390)
Q Consensus 381 ~ 381 (390)
-
T Consensus 293 c 293 (909)
T KOG1480|consen 293 C 293 (909)
T ss_pred c
Confidence 3
No 17
>KOG1480|consensus
Probab=96.15 E-value=0.0051 Score=64.09 Aligned_cols=82 Identities=29% Similarity=0.637 Sum_probs=62.3
Q ss_pred Cccc-cCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCC--CCccc-cCCcccccccC
Q psy10169 244 QWYA-TQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCK--GHWMS-GPWSKCSKTYG 319 (390)
Q Consensus 244 ~W~~-s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp--~~W~~-s~Ws~CS~tCG 319 (390)
.|.. .+|+-|.+-||.|.|.|.+.|.++..- .++..|.+. -.+...|.. .|+ +.|.. +.|+.|+..|-
T Consensus 223 gwsswt~w~~c~~rc~~~~q~rtrtc~npApl----n~G~~c~g~--s~~~~~c~~--~c~~dg~w~~ws~ws~c~~~c~ 294 (909)
T KOG1480|consen 223 GWSEWTEWSTCNVRCGRGHQKRTRTCTNPAPL----NGGAFCEGE--SVQKISCTV--LCPVDGGWSSWSDWSACSSECH 294 (909)
T ss_pred cccccccceeeeecccccccccCCCCCCcccc----CCccccccc--ccccccCcc--cccccCceeehhhhhhccCccc
Confidence 4544 888999999999999999999875532 467888873 446677776 376 56766 89999999886
Q ss_pred CCEEEEEecCCCCCCCC
Q psy10169 320 GGTMVSRTARDEVIPVE 336 (390)
Q Consensus 320 ~G~q~R~r~c~~~~~~~ 336 (390)
..|+|.|..+.|.+
T Consensus 295 ---~~r~r~ct~p~p~n 308 (909)
T KOG1480|consen 295 ---HYRTRECTAPPPMN 308 (909)
T ss_pred ---cceeeeeccCCccc
Confidence 66777787776655
No 18
>smart00193 PTN Pleiotrophin / midkine family. Heparin-binding domain family.
Probab=42.24 E-value=21 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=12.8
Q ss_pred eeeccccccccccCCCcEEEE
Q psy10169 187 WLTSEWTGCEEKCGSSLETRT 207 (390)
Q Consensus 187 W~~~~Ws~CS~sCG~G~~~R~ 207 (390)
..+++|.+|.+.= |+++|+
T Consensus 50 Ykf~~WgeCD~~T--g~k~Rs 68 (80)
T smart00193 50 YKFESWGECDANT--GLKTRS 68 (80)
T ss_pred eeccCcccccccc--Cccccc
Confidence 4569999998764 445544
No 19
>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.
Probab=37.26 E-value=25 Score=25.34 Aligned_cols=41 Identities=22% Similarity=0.624 Sum_probs=10.1
Q ss_pred cCCCcccccccCCCceEEEEEeeecCCCCCeeecCCCCCCCCCCCCccccCC
Q psy10169 128 TSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNL 179 (390)
Q Consensus 128 ~~~Ws~CS~tCG~G~q~R~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~~ 179 (390)
.+.|++|... .|+++|...-... +.+..|...+ ..+.+|..
T Consensus 8 kg~W~eCd~~--T~~rtRt~~LKk~--------~~~a~C~~t~-titK~C~~ 48 (63)
T PF01091_consen 8 KGAWSECDAT--TNTRTRTDTLKKA--------LSDASCEPTR-TITKPCKK 48 (63)
T ss_dssp E----SS-SS--SSS----EE------------SSSSS--SSS---------
T ss_pred cCCcccCcCc--CCeEEeeeeeccc--------ccCCCCccce-EEecccCC
Confidence 3999999863 4678887665432 2345675543 34555553
No 20
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=22.34 E-value=46 Score=22.57 Aligned_cols=16 Identities=50% Similarity=0.723 Sum_probs=10.7
Q ss_pred ceeccCccEEEcCCccC
Q psy10169 17 AIRNMSGHYYLNGNWRI 33 (390)
Q Consensus 17 Al~~~~g~y~lNg~~~i 33 (390)
|.++.++ |+|||.-..
T Consensus 20 a~~~~~~-~~L~G~K~~ 35 (52)
T PF02770_consen 20 ARRDGDG-YVLNGEKRF 35 (52)
T ss_dssp EEEETTE-EEEEEEEEE
T ss_pred eecccce-EEEeeEEEE
Confidence 6665444 999987443
No 21
>smart00008 HormR Domain present in hormone receptors.
Probab=22.12 E-value=73 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.7
Q ss_pred CCCCCccccccccCCCceeeeecCCC
Q psy10169 364 DTDEWTVDYVWTQLNGYSLGLDICPP 389 (390)
Q Consensus 364 ~~~~ws~ws~W~~~~~~~~~~~~~~~ 389 (390)
+...|-.+.-|-+++.|+++...||.
T Consensus 5 C~~~wD~~~CWp~t~~G~~~~~~CP~ 30 (70)
T smart00008 5 CPATWDGIICWPQTPAGQLVEVPCPD 30 (70)
T ss_pred CccccccccCCCCCCCCCEEEecCCC
Confidence 35689999999999999999999996
Done!