RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10169
(390 letters)
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I)
{Hen (Gallus gallus) [TaxId: 9031]}
Length = 163
Score = 48.4 bits (114), Expect = 2e-07
Identities = 17/148 (11%), Positives = 28/148 (18%), Gaps = 21/148 (14%)
Query: 129 SEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWL 188
C +G + D+A N + + G
Sbjct: 21 GIRQFCHSGYANGFALKVEPSQFG--------RDDTALNGIRLRCLDGSVIESLVGKWGT 72
Query: 189 TSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYA- 247
+ + C S R+ + Q C +
Sbjct: 73 WTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNI---------QFRCSDEAVLVGDGLSW 123
Query: 248 ---TQWSKCSAKCGTGIQTRKVFCGALD 272
WSK CG + D
Sbjct: 124 GRFGPWSKRCKICGLQTKVESPQGLRDD 151
Score = 38.7 bits (89), Expect = 4e-04
Identities = 12/129 (9%), Positives = 24/129 (18%), Gaps = 19/129 (14%)
Query: 73 CDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWT 132
C +G + D+A N + + G + +
Sbjct: 26 CHSGYANGFALKVEPSQFG--------RDDTALNGIRLRCLDGSVIESLVGKWGTWTSFL 77
Query: 133 GCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEW 192
C RS K + + G +
Sbjct: 78 VCPTGYLVSFSLRSEKSQGGGD-----------DTAANNIQFRCSDEAVLVGDGLSWGRF 126
Query: 193 TGCEEKCGS 201
++C
Sbjct: 127 GPWSKRCKI 135
Score = 38.3 bits (88), Expect = 5e-04
Identities = 16/135 (11%), Positives = 23/135 (17%), Gaps = 13/135 (9%)
Query: 190 SEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYATQ 249
C + + L T
Sbjct: 21 GIRQFCHSGYANGFALKVEPSQFGRDD-----TALNGIRLRCLDGSVIESLVGKWGTWTS 75
Query: 250 WSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSG 309
+ C R DD+ + + + G
Sbjct: 76 FLVCPTGYLVSFSLRSEKS-------QGGGDDTAANNIQFRCSDEAVLVGDGLSW-GRFG 127
Query: 310 PWSKCSKTYGGGTMV 324
PWSK K G T V
Sbjct: 128 PWSKRCKICGLQTKV 142
Score = 25.2 bits (54), Expect = 9.9
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 70 YVVCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTS 129
++VC RS K D A N + S++ L
Sbjct: 76 FLVCPTGYLVSFSLRSEKSQGGGDDTA-------ANNIQFRCSDEAV-LVGDGLSWGRFG 127
Query: 130 EWTGCDHLCGDGKQKRSVKCYRED 153
W+ +CG + S + R+D
Sbjct: 128 PWSKRCKICGLQTKVESPQGLRDD 151
>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 59
Score = 28.8 bits (64), Expect = 0.17
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 129 SEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPC 182
S W C CG G QKRS C + C + E+ + CN + C
Sbjct: 12 SPWDICSVTCGGGVQKRSRLC-----NNPTPQFGGKDCVGDVTEN-QICNKQDC 59
Score = 27.6 bits (61), Expect = 0.46
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 248 TQWSKCSAKCGTGIQTRKVFC 268
+ W CS CG G+Q R C
Sbjct: 12 SPWDICSVTCGGGVQKRSRLC 32
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 27.9 bits (62), Expect = 0.74
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 206 RTAVCATKNGKIYPESFCLKAKTPELQRECESPP-PC 241
RT V N + E F K LQ P P
Sbjct: 31 RTLVLGLVNSTLTIEEFHSK-----LQEATNFPLRPF 62
>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 26.8 bits (59), Expect = 0.75
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 248 TQWSKCSAKCGTGIQTRKVFC 268
+ WS CS CG G+ TR C
Sbjct: 9 SPWSSCSVTCGDGVITRIRLC 29
Score = 25.3 bits (55), Expect = 2.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 129 SEWTGCDHLCGDGKQKRSVKC 149
S W+ C CGDG R C
Sbjct: 9 SPWSSCSVTCGDGVITRIRLC 29
Score = 24.1 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 304 GHWMS-GPWSKCSKTYGGGTM 323
G W PWS CS T G G +
Sbjct: 3 GGWSHWSPWSSCSVTCGDGVI 23
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID
subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 26.7 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 206 RTAVCATKNGKIYPESFCLKAKTPELQRECESPP-PC 241
+ V +GKI E F + L RE S P P
Sbjct: 39 KELVQNLLDGKIEAEDFTSR-----LYRELNSSPQPY 70
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 27.3 bits (60), Expect = 3.3
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 280 DDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGG--TMVSRTA 328
D E+ A S Q+ G W S + Y + + T
Sbjct: 320 RDGTACAEVS-RACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTC 369
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.1 bits (57), Expect = 8.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 329 RDEVIPVEPTGKVAEADEEEECEEEEEEGEETVNNDTDE 367
R +I + K + + +E E E E V+ +
Sbjct: 66 RSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKA 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.439
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,608,045
Number of extensions: 78730
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 30
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)