RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10170
         (366 letters)



>gnl|CDD|238057 cd00109, KU, BPTI/Kunitz family of serine protease inhibitors;
           Structure is a disulfide rich alpha+beta fold. BPTI
           (bovine pancreatic trypsin inhibitor) is an extensively
           studied model structure.
          Length = 54

 Score = 73.1 bits (180), Expect = 9e-17
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 186 DPCEQPIERGDCNGNYPRWAFNKEAKSCEQFYYGGCKGNGNNFQSESACLEKCL 239
           D C  P + G C    PR+ ++   K CE F YGGC GN NNF ++  C   C 
Sbjct: 1   DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54



 Score = 73.1 bits (180), Expect = 9e-17
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 303 DPCEQPIERGDCNGNYPRWAFNKEAKSCEQFYYGGCKGNGNNFQSESACLEKCL 356
           D C  P + G C    PR+ ++   K CE F YGGC GN NNF ++  C   C 
Sbjct: 1   DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54



 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 28/52 (53%), Positives = 30/52 (57%)

Query: 247 ICRLPGDGGMCSEYHKRYYYDERRQTCVPFIYTGCGGNLNRFTTSEECLHYC 298
           +C LP D G C  Y  RYYYD   + C PF Y GCGGN N F T EEC   C
Sbjct: 2   VCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTC 53


>gnl|CDD|197529 smart00131, KU, BPTI/Kunitz family of serine protease inhibitors.
           Serine protease inhibitors. One member of the family is
           encoded by an alternatively-spliced form of Alzheimer's
           amyloid beta-protein.
          Length = 53

 Score = 71.1 bits (175), Expect = 4e-16
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 186 DPCEQPIERGDCNGNYPRWAFNKEAKSCEQFYYGGCKGNGNNFQSESACLEKC 238
           D C  P + G C G+ PR+ ++ E  +CE F YGGC GN NNF+S   C   C
Sbjct: 1   DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53



 Score = 71.1 bits (175), Expect = 4e-16
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 303 DPCEQPIERGDCNGNYPRWAFNKEAKSCEQFYYGGCKGNGNNFQSESACLEKC 355
           D C  P + G C G+ PR+ ++ E  +CE F YGGC GN NNF+S   C   C
Sbjct: 1   DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53



 Score = 68.1 bits (167), Expect = 7e-15
 Identities = 27/52 (51%), Positives = 29/52 (55%)

Query: 247 ICRLPGDGGMCSEYHKRYYYDERRQTCVPFIYTGCGGNLNRFTTSEECLHYC 298
           +C LP D G C     RYYYD    TC PF Y GCGGN N F + EEC   C
Sbjct: 2   VCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53


>gnl|CDD|200929 pfam00014, Kunitz_BPTI, Kunitz/Bovine pancreatic trypsin inhibitor
           domain.  Indicative of a protease inhibitor, usually a
           serine protease inhibitor. Structure is a disulfide rich
           alpha+beta fold. BPTI (bovine pancreatic trypsin
           inhibitor) is an extensively studied model structure.
           Certain family members are similar to the tick
           anticoagulant peptide (TAP). This is a highly selective
           inhibitor of factor Xa in the blood coagulation
           pathways. TAP molecules are highly dipolar, and are
           arranged to form a twisted two- stranded antiparallel
           beta-sheet followed by an alpha helix.
          Length = 53

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 24/53 (45%), Positives = 29/53 (54%)

Query: 187 PCEQPIERGDCNGNYPRWAFNKEAKSCEQFYYGGCKGNGNNFQSESACLEKCL 239
            C  P + G C G+ PRW +N     CE F YGGC GN NNF+S   C + C 
Sbjct: 1   FCLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKACR 53



 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 24/53 (45%), Positives = 29/53 (54%)

Query: 304 PCEQPIERGDCNGNYPRWAFNKEAKSCEQFYYGGCKGNGNNFQSESACLEKCL 356
            C  P + G C G+ PRW +N     CE F YGGC GN NNF+S   C + C 
Sbjct: 1   FCLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKACR 53



 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 25/52 (48%), Positives = 28/52 (53%)

Query: 247 ICRLPGDGGMCSEYHKRYYYDERRQTCVPFIYTGCGGNLNRFTTSEECLHYC 298
            C LP D G C     R+YY+     C PFIY GCGGN N F + EEC   C
Sbjct: 1   FCLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKAC 52


>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region.  This family
           represents an N-terminal conserved region found in
           several huntingtin-associated protein 1 (HAP1)
           homologues. HAP1 binds to huntingtin in a polyglutamine
           repeat-length-dependent manner. However, its possible
           role in the pathogenesis of Huntington's disease is
           unclear. This family also includes a similar N-terminal
           conserved region from hypothetical protein products of
           ALS2CR3 genes found in the human juvenile amyotrophic
           lateral sclerosis critical region 2q33-2q34.
          Length = 307

 Score = 30.9 bits (70), Expect = 0.91
 Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 4/45 (8%)

Query: 122 ASTTPTPDKSKPSEPPKEDCAATQFGCCPDGTAATKKTLEDCAGI 166
           AS     D S      +          C +      KT  D   +
Sbjct: 28  ASPDARLDLS----TEQRAETLKYLALCANRVGQMTKTYNDIDAV 68


>gnl|CDD|115703 pfam07067, DUF1340, Protein of unknown function (DUF1340).  This
           family consists of several hypothetical Streptococcus
           thermophilus bacteriophage proteins of around 235
           residues in length. The function of this family is
           unknown.
          Length = 236

 Score = 29.6 bits (66), Expect = 2.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 168 LKNCSVSAWGCCPDSNKTD 186
            ++ S S+  C PD+ KT+
Sbjct: 90  SEHYSASSVSCKPDTYKTN 108


>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160.  This
           family consists of several special lobe-specific silk
           protein SSP160 sequences which appear to be specific to
           Chironomus (Midge) species.
          Length = 758

 Score = 29.7 bits (66), Expect = 3.0
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 5   TQSSLSTSDETSTITPGSSTIDSSTPGKEP--APTCRPNLE------GCGCVY---TPYG 53
             ++ ST+  T+T T  + T  ++     P   P C   +       G GC Y   +  G
Sbjct: 680 NTTTSSTTTTTTTTTTAAPTTTTTKAANAPFTYPLCNLIMSAACSAGGAGCTYPFISSAG 739

Query: 54  CCPDNQTVARGPDNAGC 70
           CCP  +T+  G    GC
Sbjct: 740 CCPSGKTLNTGLGGRGC 756


>gnl|CDD|146174 pfam03396, Pox_RNA_pol_35, Poxvirus DNA-directed RNA polymerase, 35
           kD subunit. 
          Length = 292

 Score = 29.2 bits (66), Expect = 3.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 266 YDERRQTCVPFIYTGCGGNLNRFTTS 291
            DE  ++ VPFI     G L  F  S
Sbjct: 172 LDENFRSIVPFIVIAPLGRLTFFVES 197


>gnl|CDD|144532 pfam00973, Paramyxo_ncap, Paramyxovirus nucleocapsid protein.  The
           nucleocapsid protein is referred to as NP. NP is is the
           major structural component of the nucleocapsid. The
           protein is approx. 58 kDa. 2600 NP molecules go to
           tightly encapsidate the RNA. NP interacts with several
           other viral encoded proteins, all of which are involved
           in controlling replication. {NP-NP, NP-P, NP-(PL), and
           NP-V}.
          Length = 524

 Score = 29.0 bits (65), Expect = 4.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 107 DGVTRAVGPRQQDATASTTPTPDKSKPSEPPKEDCAATQFG 147
           D   RA GP+Q   +   T   ++ +P    KE+  A Q  
Sbjct: 404 DRTNRATGPKQAQVSFLHTDQGEEEQPRLSKKEERRAKQGR 444


>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family.  This protein is
           found in bacteria. Proteins in this family are typically
           between 234 to 465 amino acids in length. There is a
           conserved GEV sequence motif.Most members are annotated
           as being SprA-related.
          Length = 261

 Score = 28.6 bits (64), Expect = 4.6
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 87  ATGPNYEGCPCYTYQFGCCPDGVTRAVG 114
           A G  Y G P YTY+ G  PDG   AVG
Sbjct: 132 AVGGQYAGAPSYTYERG--PDGKRYAVG 157


>gnl|CDD|193262 pfam12786, GBV-C_env, GB virus C genotype envelope.  This the
           envelope protein from the ssRNA GB virus genotype C.
          Length = 413

 Score = 28.2 bits (63), Expect = 7.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 88  TGPNYEGCPCYTYQFGCCPDGVTRAVGPRQQDATASTTPTP 128
           TG   + CP + + F    +G     G RQQ  +    P+P
Sbjct: 369 TGSGVDVCPGFAFDFPGDHNGFIHVKGGRQQVDSGQRRPSP 409


>gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional.
          Length = 426

 Score = 27.9 bits (63), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 240 HPGRTRVICRLPG 252
            PGR  V+ RLPG
Sbjct: 48  APGRANVVARLPG 60


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.136    0.467 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,277,525
Number of extensions: 1495834
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 28
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)