RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10173
(456 letters)
>gnl|CDD|200929 pfam00014, Kunitz_BPTI, Kunitz/Bovine pancreatic trypsin inhibitor
domain. Indicative of a protease inhibitor, usually a
serine protease inhibitor. Structure is a disulfide rich
alpha+beta fold. BPTI (bovine pancreatic trypsin
inhibitor) is an extensively studied model structure.
Certain family members are similar to the tick
anticoagulant peptide (TAP). This is a highly selective
inhibitor of factor Xa in the blood coagulation
pathways. TAP molecules are highly dipolar, and are
arranged to form a twisted two- stranded antiparallel
beta-sheet followed by an alpha helix.
Length = 53
Score = 87.4 bits (217), Expect = 1e-21
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 343 ACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
C LP D GPCR +W+Y+ G C F YGGC GN N F+S EEC C
Sbjct: 1 FCLLPPDPGPCRGSIPRWYYNPST-GQCEPFIYGGCGGNANNFESLEECEKACR 53
>gnl|CDD|238057 cd00109, KU, BPTI/Kunitz family of serine protease inhibitors;
Structure is a disulfide rich alpha+beta fold. BPTI
(bovine pancreatic trypsin inhibitor) is an extensively
studied model structure.
Length = 54
Score = 86.9 bits (216), Expect = 2e-21
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
CSLP D GPC+ + +++YD C F YGGC GN N F ++EEC C
Sbjct: 3 CSLPPDTGPCKAYIPRYYYD-ATTKQCEPFTYGGCGGNANNFATKEECERTCG 54
>gnl|CDD|197529 smart00131, KU, BPTI/Kunitz family of serine protease inhibitors.
Serine protease inhibitors. One member of the family is
encoded by an alternatively-spliced form of Alzheimer's
amyloid beta-protein.
Length = 53
Score = 83.1 bits (206), Expect = 4e-20
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 343 ACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C LP D GPC +++YD + G C F YGGC GN N F+S EEC C
Sbjct: 2 VCLLPPDTGPCGGSIPRYYYD-PETGTCEPFTYGGCGGNANNFESLEECERTC 53
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 46.4 bits (110), Expect = 2e-05
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 241 TETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASS 300
T T T +G + ++ T TT + + TS +S T + +S
Sbjct: 759 ASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTS 818
Query: 301 TAESTLISSTAASSTTLITTESTMESTTGG 330
+ T +S +ST+ TT S ++TTGG
Sbjct: 819 SPSPTQTTSPTQTSTSTTTTTSPSQTTTGG 848
Score = 46.4 bits (110), Expect = 3e-05
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 226 ASTLTPPTTDTPTTITET--TPTETTITGIPSVIT----TETTTDASTTEISTTEAATST 279
AS T + T E +PT+T T S + TT T+ T T++
Sbjct: 759 ASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTS 818
Query: 280 TEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLI 318
+ + + TT+ + T TST +++ T +I
Sbjct: 819 SPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGPIVII 857
Score = 37.1 bits (86), Expect = 0.020
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 217 LPARDSTTDASTLTPPTTDTPTT--------------ITETTPTETTITGIPSVITTETT 262
+T+ T P + T T I T+ T + TT +
Sbjct: 762 TGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTV-TQTQTTTSSP 820
Query: 263 TDASTTEISTTEAATSTTEAVSSTTAGST 291
+ TT + T +T+TT + S TT G
Sbjct: 821 SPTQTTSPTQTSTSTTTTTSPSQTTTGGG 849
Score = 35.6 bits (82), Expect = 0.057
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 223 TTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEA 282
++ S L T+ T T T T S T+TT+ T+ +TT + S T
Sbjct: 792 YSNTSILIETTSVVITKTVTQTQTTT-----SSPSPTQTTSPTQTSTSTTTTTSPSQT-T 845
Query: 283 VSSTTAG 289
G
Sbjct: 846 TGGGICG 852
Score = 31.0 bits (70), Expect = 1.8
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 2 ESTTGGKSIESLGPGPQKTSTVLSTTEGSTSTPLEKTTVTDLTSEGFSELPSSTGSTTEV 61
E+T + + + TS V++ T T T + T TS + ++T ++
Sbjct: 784 ETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQ 843
Query: 62 STITT 66
+T
Sbjct: 844 TTTGG 848
Score = 30.6 bits (69), Expect = 1.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 222 STTDASTLTPPTTDTPTTITETTPTETTITGIPSVI 257
S + T +P T T TT T + TT GI I
Sbjct: 819 SPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGPI 854
Score = 29.4 bits (66), Expect = 5.1
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 17 PQKTSTVLSTTEGS-------TSTPLEKTTVTDLTSEGFSELPSSTGSTTEVSTITTSYD 69
P KT T LS + S T++ + TVT + S P+ T S T+ ST TT+
Sbjct: 780 PTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839
Query: 70 TSSLSTIDA 78
+ S +T
Sbjct: 840 SPSQTTTGG 848
Score = 29.1 bits (65), Expect = 5.7
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 4 TTGGKSIESLGPGPQKTSTVLSTTEGSTSTPLEKTTVTDLTSEGFSELPSSTGSTTEVST 63
TT + + P + T +TS T + S+ +T+ +
Sbjct: 747 TTKRVKVRIMDP------ASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIE 800
Query: 64 ITTSYDTSSLSTIDADLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTIDSTTTL 119
T+ T +++ +S ++ S T ++T +T T+ T++ I +
Sbjct: 801 TTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGPIVI 856
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 45.2 bits (107), Expect = 5e-05
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 224 TDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAV 283
+ T P T T +TTP E+ T T + S++E A ++
Sbjct: 28 AEEIVTTTPAT--STEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTS 85
Query: 284 SSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTE 321
+T ++ + ++T S + L TT+
Sbjct: 86 EATDTTTSEARTVTPAATETSKPVEGQTVDVRILSTTD 123
Score = 42.1 bits (99), Expect = 5e-04
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 258 TTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTL 317
TT ST TT + TE +T T+ A S++E+ S + +T
Sbjct: 31 IVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDT 90
Query: 318 ITTES 322
T+E+
Sbjct: 91 TTSEA 95
Score = 40.2 bits (94), Expect = 0.002
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 234 TDTPTTITETTPTETTITGIPSVITTETTTDASTTE-ISTTEAATSTTEAVSSTTAGSTT 292
T + + + TT + T ++ TE TE + T A + ++ T
Sbjct: 19 TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETA 78
Query: 293 ETSTVASSTAESTLISSTAASSTTLITT 320
ETS S ++T + + T+
Sbjct: 79 ETSDPTSEATDTTTSEARTVTPAATETS 106
Score = 39.5 bits (92), Expect = 0.003
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 223 TTDASTLTP--PTTDTPTTITETTPTET-TITGIPSVITTETT--TDASTTEIS-TTEAA 276
+ T TP T TT E+ TE T P TT + + T E S T A
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEA 87
Query: 277 TSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLI 318
T TT + + T + TETS I ST T L+
Sbjct: 88 TDTTTSEARTVTPAATETSKPVEGQTVDVRILSTTDLHTNLV 129
Score = 38.3 bits (89), Expect = 0.009
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 215 NILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTE 274
P T+ + T T + +ET T P+ T+TTT + T T
Sbjct: 44 QTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEART---VTP 100
Query: 275 AATSTTEAVSSTTAG----STTETST 296
AAT T++ V T STT+ T
Sbjct: 101 AATETSKPVEGQTVDVRILSTTDLHT 126
Score = 37.9 bits (88), Expect = 0.013
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 265 ASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTM 324
A EI TT ATST ++ TE + + +T + +SS T T++ T
Sbjct: 26 AQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTS 85
Query: 325 ESTTGGKSIESLGPGPQKACSLP 347
E+T S S P
Sbjct: 86 EATDTTTSEARTVTPAATETSKP 108
Score = 29.1 bits (65), Expect = 6.1
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 17 PQKTSTVLSTTEGSTSTPLEKTTVTDLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTI 76
TST T S E+ T ++T + S+ T+ + S
Sbjct: 35 TPATSTEAEQTTPVESDATEEADNT-------ETPVAATTAAEAPSSSETAETSDPTSEA 87
Query: 77 DADLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTIDSTTTL 119
TSE + P++T ++ V T D LST D T L
Sbjct: 88 TDTTTSEARTVTPAATETSKPVEGQTV--DVRILSTTDLHTNL 128
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 40.2 bits (93), Expect = 0.002
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 1/134 (0%)
Query: 215 NILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTE 274
+ A +T + T + T TPT TT + +P T+ T+ S T +T+
Sbjct: 444 HKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPED-TSPTSRTTSATPNATSP 502
Query: 275 AATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIE 334
TT +S T T++T S T +++TA S T T+ S +
Sbjct: 503 TPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESP 562
Query: 335 SLGPGPQKACSLPK 348
S P
Sbjct: 563 VNNTNTPVVTSAPS 576
Score = 36.3 bits (83), Expect = 0.033
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 218 PARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAAT 277
++T+ +T P +PTT +T+ T + P VI TT + T ++ AT
Sbjct: 495 ATPNATSPTPAVTTPNATSPTTQ-KTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNAT 553
Query: 278 S----TTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTT 328
S V++T T +V +S + + ++ ++ S+ ST
Sbjct: 554 SPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTP 608
Score = 36.3 bits (83), Expect = 0.033
Identities = 38/159 (23%), Positives = 52/159 (32%), Gaps = 2/159 (1%)
Query: 189 DDNVTAAHGPYKEGCCLNTPYGCCPDNILPARDSTTDASTLTPPTTDTPTTITETTPTET 248
D + Y P ST + PT+ TPT T +T E
Sbjct: 426 PDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPE- 484
Query: 249 TITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLIS 308
T S T+ T S T TT ATS T +S T +T+ T V T +T
Sbjct: 485 -DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP 543
Query: 309 STAASSTTLITTESTMESTTGGKSIESLGPGPQKACSLP 347
+ S + + T ES + + P S
Sbjct: 544 TGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAV 582
Score = 34.0 bits (77), Expect = 0.18
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 218 PARDSTTDASTLTPPTTDTPT-TITETTPTETTITGIPSVITTETTTDASTTEISTTEAA 276
P +++ T PT+ T + T T+PT T + TT+ T+D T
Sbjct: 474 PTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVI 533
Query: 277 TSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIESL 336
TT A S T ++ +T T ES ++T S T +
Sbjct: 534 GVTTTATSPPTGTTSVPNATSPQVTEES------PVNNTNTPVVTSAPSVLTSAVTTGQH 587
Query: 337 GPGPQKACSLP 347
G G P
Sbjct: 588 GTGSSPTSQQP 598
Score = 32.4 bits (73), Expect = 0.61
Identities = 59/328 (17%), Positives = 93/328 (28%), Gaps = 16/328 (4%)
Query: 17 PQKTSTVLSTTEGSTSTPLEKTTVTDLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTI 76
P KT+ V +T ++ + D TS + TG+T+ TS TS ++
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTS------GTPTGTTSSTLPEDTS-PTSRTTSA 495
Query: 77 DADLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTIDSTTTLNPLQTAIVKEVTLKKCK 136
+ TS + + S T T T TS + TT V
Sbjct: 496 TPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSP 555
Query: 137 TKKPKKPKCDTTEFGCCFDGITAAKGPFSAALSPDFSKGCK-PECAESPHGCCDDNVTAA 195
+ P +T + S + P S H N T+
Sbjct: 556 QVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTST 615
Query: 196 HGPYKEGCCLNTPYGCCPDNILPARDSTTDASTLTP-----PTTDTPTTITETTPTETTI 250
G P+ STT STL+P T+ +T
Sbjct: 616 TPLLTSAHPTG---GENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGE 672
Query: 251 TGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISST 310
+ + T S T T T+ + + T ST+ +ST+ T +
Sbjct: 673 VHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAF 732
Query: 311 AASSTTLITTESTMESTTGGKSIESLGP 338
+ T S+ P
Sbjct: 733 RTTPYNATTYLPPSTSSKLRPRWTFTSP 760
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 37.7 bits (88), Expect = 0.009
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 221 DSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTT 280
+TTD +T P TT T + P+V + + ++ + AAT
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV-VAPSQANVDTAATPAP 225
Query: 281 EAVSSTTAGSTTETSTVASSTAES 304
A ++ + T ST +
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPAA 249
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 37.7 bits (87), Expect = 0.011
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 222 STTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTE 281
STT +S + +T +PTT T T I + T T+ TEI T+E+ + +
Sbjct: 5 STTLSSIILSSSTLSPTTFF----TIETSMDESKSIIS-TFTEIIPTEIPTSESPSPNSN 59
Query: 282 AVSSTTAGSTTET 294
+ SS+++ S++ T
Sbjct: 60 SSSSSSSSSSSIT 72
Score = 34.6 bits (79), Expect = 0.11
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 233 TTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTT 292
TT + ++ +T + TT I + + + ++ TEI TE TS + + +S ++ S++
Sbjct: 6 TTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSSS 65
Query: 293 ETST 296
+S+
Sbjct: 66 SSSS 69
Score = 33.4 bits (76), Expect = 0.21
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 284 SSTTAGSTTETSTVASSTAESTLISSTAASS------TTLITTES-TMESTTGGKSIES 335
SSTT S +S+ S T T+ +S S T +I TE T ES + + S
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Score = 33.1 bits (75), Expect = 0.27
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 255 SVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASS 314
S I ++T + TT + + + +S+ T TE T S + S SS+++SS
Sbjct: 9 SSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSSSSSS 68
Query: 315 TTL 317
+++
Sbjct: 69 SSI 71
Score = 32.3 bits (73), Expect = 0.55
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 235 DTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTET 294
++ TT++ + +T++ + T ET+ D S + IST T S + + ++ +
Sbjct: 3 NSSTTLSSIILSSSTLSPT-TFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSS 61
Query: 295 STVASSTAEST 305
S+ +SS++ T
Sbjct: 62 SSSSSSSSSIT 72
Score = 31.1 bits (70), Expect = 1.3
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 51 LPSSTGSTTEVSTITTSYDTSSLSTIDADLTSEGFSELPSSTGSTTEVSTITTSYDTSSL 110
L SST S T TI TS D S +I + T +E+P+S + ++ ++S +SS
Sbjct: 13 LSSSTLSPTTFFTIETSMDESK--SIISTFTEIIPTEIPTSESPSPNSNSSSSSSSSSSS 70
Query: 111 STID 114
T D
Sbjct: 71 ITYD 74
Score = 30.4 bits (68), Expect = 2.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 57 STTEVSTITTSYDTSSLSTIDADLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTIDST 116
S+T +S+I S T S +T TS S+ ST T + T + ++ S ++ S+
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETSMDESKSIIST-FTEIIPTEIPTSESPSPNSNSSS 62
Query: 117 TT 118
++
Sbjct: 63 SS 64
Score = 30.4 bits (68), Expect = 2.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 298 ASSTAESTLISSTAASSTTLITTESTM-ESTTGGKSIESLGP 338
+S+T S ++SS+ S TT T E++M ES + + + P
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIP 45
Score = 30.0 bits (67), Expect = 2.7
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 255 SVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASS 314
S T + +S+T TT T+ S + + TE T+ES +S ++SS
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSS 63
Query: 315 TTLITTESTME 325
++ ++ T +
Sbjct: 64 SSSSSSSITYD 74
Score = 28.4 bits (63), Expect = 8.2
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 20 TSTVLSTTEGSTSTPLEKTTVTDLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTIDAD 79
+ST LS+ S+ST T T TS S+ ST T + T + ++ S ++
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETSMDESKSIIST-FTEIIPTEIPTSESPSPNS---- 58
Query: 80 LTSEGFSELPSSTGSTTEVSTITTSYD 106
SS+ S++ S+IT Y+
Sbjct: 59 ---------NSSSSSSSSSSSITYDYE 76
>gnl|CDD|224301 COG1383, RPS17A, Ribosomal protein S17E [Translation, ribosomal
structure and biogenesis].
Length = 74
Score = 34.3 bits (79), Expect = 0.014
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 407 LLTCDSIMNAVILDDLAVLVPKHLRDRIAVYITR 440
T D N ++++LA + K LR+RIA YITR
Sbjct: 23 KFTDDFETNKRLVEELANIQSKKLRNRIAGYITR 56
>gnl|CDD|236782 PRK10871, nlpD, lipoprotein NlpD; Provisional.
Length = 319
Score = 36.0 bits (83), Expect = 0.035
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 240 ITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVAS 299
IT+ E + P+ +T T S + S + + + +TT T+ V +
Sbjct: 119 ITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTA 178
Query: 300 STAESTLISSTAASSTTLITTESTMESTTGGKSIESLG 337
TA +T ++++ S++T I ST T GK IE+
Sbjct: 179 PTASTTEPTASSTSTSTPI---STWRWPTDGKVIENFS 213
>gnl|CDD|179234 PRK01151, rps17E, 30S ribosomal protein S17e; Validated.
Length = 58
Score = 32.2 bits (74), Expect = 0.046
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 415 NAVILDDLAVLVPKHLRDRIAVYITR 440
N ++++L + K +R+RIA YITR
Sbjct: 30 NKKLVEELTNIESKKVRNRIAGYITR 55
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 35.6 bits (82), Expect = 0.062
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 233 TTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTT 292
T + E T T T TT TT T E T+T E TT GS+T
Sbjct: 700 TDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
Query: 293 ETSTVA 298
+A
Sbjct: 760 PGFGIA 765
Score = 28.7 bits (64), Expect = 8.9
Identities = 17/58 (29%), Positives = 22/58 (37%)
Query: 220 RDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAAT 277
R + P T T T TT TT + TTT TE +TT ++T
Sbjct: 702 RVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 34.3 bits (79), Expect = 0.078
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 232 PTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGST 291
P+ D + T+ T +T S + +TTT +++T+ S T + T TT S T
Sbjct: 62 PSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEE 121
Query: 292 TETSTVASSTAESTLISSTAASSTTLITTE 321
T+ + E ++T S L E
Sbjct: 122 ATTTVSTETPTEGGSSAATDPSKNLLERKE 151
Score = 31.2 bits (71), Expect = 0.77
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 222 STTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTE 281
+T+ + + T T T + T T T T PS TE T +TE T +++ T+
Sbjct: 82 TTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTETPTEGGSSAATD 141
Query: 282 AVSS 285
+
Sbjct: 142 PSKN 145
Score = 30.1 bits (68), Expect = 1.8
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 227 STLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSST 286
T T + TT T +T T+T+ T +V TT + ++ T E +TT + + TE SS
Sbjct: 80 LTTTSSSPSNDTT-TASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTETPTEGGSSA 138
Query: 287 TAGST 291
+
Sbjct: 139 ATDPS 143
Score = 28.6 bits (64), Expect = 5.2
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 218 PARDSTTDASTLTPPTTDTPTTITETT-PTETTITGIPSVITTETTTDA 265
+ TT AST T + TT+T TT P+ET + ++TET T+
Sbjct: 86 SPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTETPTEG 134
Score = 28.2 bits (63), Expect = 7.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 231 PPTTDTPTTITETTPTETTI--TGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTA 288
T T + T T ++ + +T+T+ STT +TT + + TE ++T
Sbjct: 68 SEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTV- 126
Query: 289 GSTTETSTVASSTAES 304
+TET T S+A +
Sbjct: 127 --STETPTEGGSSAAT 140
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 34.8 bits (80), Expect = 0.10
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 227 STLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSST 286
+TL PT +PT + ++T + ++ + D T++ ++++ +S
Sbjct: 13 TTLVLPTLTSPTAYADDPQKDSTAKT--TSHDSKKSNDDETSKDTSSKDTDKADNNNTSN 70
Query: 287 TAGSTTETSTVASSTAESTLISSTAASST 315
+ + ST+ SST++S I +
Sbjct: 71 QDNNDKKFSTIDSSTSDSNNIIDFIYKNL 99
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 34.1 bits (78), Expect = 0.15
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 228 TLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTT 287
L P T + +E+T T P +TE ++T +A SST
Sbjct: 85 NLAPITPPSSEPTPAPPSSESTATRTPDPNQQALE----STESTSTTSADCNDSEQSSTP 140
Query: 288 AGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIESLGP--GPQKACS 345
++++TST +S ST + + S + ST + +S P PQ
Sbjct: 141 NLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAPQAKPE 200
Query: 346 LPKDNGP 352
LPK
Sbjct: 201 LPKKKQA 207
Score = 29.1 bits (65), Expect = 5.4
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 218 PARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAAT 277
PA S+ +T TP TE+T T + +ST +++++ +T
Sbjct: 98 PAPPSSESTATRTPDPNQQALESTESTSTT--------SADCNDSEQSSTPNLNSSDTST 149
Query: 278 STTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTEST 323
S++ A+ ST+ S ++SS + ++ + + + T +
Sbjct: 150 SSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAP 195
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 34.3 bits (79), Expect = 0.15
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 217 LPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDA--STTEISTTE 274
LP + + + P E + +T +TT
Sbjct: 376 LPEGQTPSALAAAVQAPHANEPQFVNAAPAEK-----KTALTEQTTAQQQVQAANAEAVA 430
Query: 275 AATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAAS 313
A ++ E + E+ +A+ AE +I S A S
Sbjct: 431 EADASAEPADTVEQALDDESELLAALNAEQAVILSQAQS 469
>gnl|CDD|113196 pfam04415, DUF515, Protein of unknown function (DUF515). Family of
hypothetical Archaeal proteins.
Length = 416
Score = 33.7 bits (77), Expect = 0.18
Identities = 16/83 (19%), Positives = 41/83 (49%)
Query: 235 DTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTET 294
T E + I SV +++ + ++++ ST+ + +S+T + ++
Sbjct: 258 QNGTIFYEIVDSGYVILSSISVSESQSQSTSTSSSSSTSSSESSSTSYSPGDASIQNSQR 317
Query: 295 STVASSTAESTLISSTAASSTTL 317
S + SST++S S++++ S ++
Sbjct: 318 SQLQSSTSQSESESASSSYSYSV 340
Score = 29.1 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 276 ATSTTEAVSSTTAGSTTETSTVASSTAES---TLISSTAASSTTLITTESTMESTT 328
+ S +++ S++T+ S++ +S+ +SST+ S I ++ S T++S ES +
Sbjct: 278 SVSESQSQSTSTSSSSSTSSSESSSTSYSPGDASIQNSQRSQLQSSTSQSESESAS 333
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 33.5 bits (77), Expect = 0.28
Identities = 18/111 (16%), Positives = 23/111 (20%), Gaps = 8/111 (7%)
Query: 226 ASTLTPPTTDTPTTITETTPTETT--------ITGIPSVITTETTTDASTTEISTTEAAT 277
A + P E ETT +T P VIT A
Sbjct: 892 AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVE 951
Query: 278 STTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTT 328
E A T E A + + T +
Sbjct: 952 PQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
>gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains
Xre-like HTH domain [Function unknown].
Length = 284
Score = 32.8 bits (75), Expect = 0.32
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 218 PARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDAS-TTEISTTEAA 276
A STT + T + + T T TPT T I + + T +++ + A
Sbjct: 154 LATSSTTPSEGTTSASPSSAT--TSFTPTVTAIAPVVAPTAKPVTVPKQPAADLAASSTA 211
Query: 277 TSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASST 315
+ E + A T S V + +S + +
Sbjct: 212 PAAKEMATGQEA-VPTAGSGVTTVAGKSAALVINFTADC 249
Score = 28.2 bits (63), Expect = 8.0
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 260 ETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTA-ASSTTLI 318
+ + D S STT + TT A S+ S T T T + T T +
Sbjct: 147 QNSQDVSLATSSTTPSE-GTTSASPSSATTSFTPTVTAIAPVVAPTAKPVTVPKQPAADL 205
Query: 319 TTESTMESTTGGKSIESLGPGPQKACSLPKDNGP 352
ST + + + P +
Sbjct: 206 AASSTAPAAKEMATGQEAVPTAGSGVTTVAGKSA 239
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 32.6 bits (74), Expect = 0.32
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 258 TTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTL 317
T+ TT TTE A +TT ++ T + TST A+ A + + ++T
Sbjct: 3 ETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Query: 318 ITTEST 323
+T +
Sbjct: 63 VTVKFE 68
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 32.8 bits (74), Expect = 0.37
Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 221 DSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTT 280
D+ + T + TP+ I + ++ TT A+TT+ S +++
Sbjct: 294 DTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGV 353
Query: 281 EAVSSTTAGSTTETSTV-ASSTAESTLISSTAASSTTLITTESTMESTT 328
T G+ + + + + T SST IT+ + +T+
Sbjct: 354 LPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTS 402
Score = 30.5 bits (68), Expect = 2.2
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 223 TTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEA 282
T + T + T + + P+VI + +T +TT+A+ A
Sbjct: 295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSS----VTTQSATTTQASAV---A 347
Query: 283 VSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKS 332
+SS + T + + ++ +T T +S+ + T +
Sbjct: 348 LSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN 397
Score = 28.9 bits (64), Expect = 6.4
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 224 TDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTE--ISTTEAATSTTE 281
+ +T + TT + + +P + + +STTE S+T
Sbjct: 331 SSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTG 390
Query: 282 AVSSTTAGSTTETSTVASSTAESTLISSTA 311
++ST G TT +S + S A
Sbjct: 391 NITSTANGPTTSLPAAPASNIPVSPTSRDA 420
Score = 28.1 bits (62), Expect = 9.5
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 210 GCCPDNILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTE 269
G P + + T +S +TP + P+ P+ + TTT AS
Sbjct: 297 GTVPVAAVTPSSAVTQSSAITPSSAAIPSP--AVIPS-------SVTTQSATTTQASAVA 347
Query: 270 ISTTEAATSTTEAVSSTTAGSTTETSTVAS-STAESTLISSTAASSTT 316
+S+ S + + + + T SST ++T
Sbjct: 348 LSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITST 395
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 32.7 bits (74), Expect = 0.45
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 209 YGCCPDNILP-ARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDAST 267
Y C IL A ++T +S + T TPT TT ++ + T ++
Sbjct: 14 YIICAGAILTYASGASTSSSIENSDNSTAEMQSTPATPTHTT----SNLTSPFGTGTDNS 69
Query: 268 TEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTEST 323
T + TE+ T ++ S + T +LIS S + T S
Sbjct: 70 TNANGTESTTQASQP-----------HSHETTITCTKSLISVPYYKSVDMNCTTSV 114
Score = 28.8 bits (64), Expect = 7.7
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 263 TDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTES 322
++T + AT T + T+ T ++ ++ EST +S S T IT
Sbjct: 36 NSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPHSHETTITCTK 95
Query: 323 TMESTTGGKSIE 334
++ S KS++
Sbjct: 96 SLISVPYYKSVD 107
>gnl|CDD|240295 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional.
Length = 134
Score = 31.2 bits (71), Expect = 0.47
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 408 LTCDSIMNAVILDDLAVLVPKHLRDRIAVYIT------RNGNVRSNSKHLGLQ 454
LT D N I++++A++ K LR++IA ++T + G VR S L LQ
Sbjct: 24 LTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGIS--LKLQ 74
>gnl|CDD|216233 pfam00997, Casein_kappa, Kappa casein. Kappa-casein is a mammalian
milk protein involved in a number of important
physiological processes. In the gut, the ingested
protein is split into an insoluble peptide (para
kappa-casein) and a soluble hydrophilic glycopeptide
(caseinomacropeptide). Caseinomacropeptide is
responsible for increased efficiency of digestion,
prevention of neonate hypersensitivity to ingested
proteins, and inhibition of gastric pathogens.
Length = 161
Score = 31.4 bits (71), Expect = 0.48
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 232 PTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTA 288
PT +T T+ E TP TT + T T +AS+ I +T +TT AV+S A
Sbjct: 112 PTINTIATV-EPTPVPTT----EPTVNTVVTPEASSEFIIST--PETTTVAVTSPEA 161
Score = 29.4 bits (66), Expect = 2.6
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 251 TGIPSVITTETTTDASTTEISTTEAATST--TEAVSSTTAGSTTETSTVASSTAES 304
T IP T T T + TTE +T T SS ST ET+TVA ++ E+
Sbjct: 109 TAIP---TINTIATVEPTPVPTTEPTVNTVVTPEASSEFIISTPETTTVAVTSPEA 161
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 31.8 bits (71), Expect = 0.57
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 213 PDNILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTE------TTTDAS 266
P P+ + +T +T + P T T T TT +T T + V TT TT +
Sbjct: 48 PSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVT 107
Query: 267 TTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMES 326
I+ TEA T T+ V+S ++ T++ + +T ++ T +S T T++T E
Sbjct: 108 AQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAEL 167
Query: 327 TT 328
T
Sbjct: 168 PT 169
Score = 31.8 bits (71), Expect = 0.60
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 223 TTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATS---T 279
TT + + + P+T+ TT+T T+ TT + + TT T+T + T + TT A++ T
Sbjct: 44 TTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVT 103
Query: 280 TEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKS 332
T+ + + T T T+ T SS+ S+TT IT +T+ T K
Sbjct: 104 TKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKG 156
Score = 29.5 bits (65), Expect = 3.5
Identities = 23/105 (21%), Positives = 48/105 (45%)
Query: 235 DTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTET 294
+T T + + + + T + +++ + +TT A +TTA +T T
Sbjct: 19 ETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNT 78
Query: 295 STVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIESLGPG 339
+TV S+ T + +T+ +ST +TT+ T ++ T ++ G
Sbjct: 79 TTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTG 123
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 31.8 bits (72), Expect = 0.66
Identities = 27/123 (21%), Positives = 36/123 (29%), Gaps = 7/123 (5%)
Query: 194 AAHGPYKEGCCLNTP-YGCCPDNILPARDSTTDASTLTPPTTDTP---TTITETTPTETT 249
A G G C + + A P T T ETTPT +T
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPST 226
Query: 250 ITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISS 309
T PS +T + + TT A T T G A+ E++
Sbjct: 227 TTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAP---PTPGGGEAPPANATPAPEASRYEL 283
Query: 310 TAA 312
T
Sbjct: 284 TVT 286
Score = 29.2 bits (65), Expect = 5.1
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 218 PARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPS-VITTETTTDASTTEISTTEAA 276
R + + +T TP TT +P + T P+ T E T T A
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPA 270
Query: 277 TSTTEAVSSTTAGSTTETSTVA 298
+T +S + T+ +A
Sbjct: 271 NATPAPEASRYELTVTQIIQIA 292
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 32.1 bits (73), Expect = 0.70
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 12 SLGPGPQKTSTVLS------TTEGSTSTPLEKTTVTDLTSEGFSELPSSTGSTTEVSTIT 65
LGP PQ+ VLS ++ STP ++ + + S PS T +
Sbjct: 99 ELGPTPQRDGKVLSLFDLLSSSTPPESTPSKRKLASSVASATPFSTPSKRRETLDAEDED 158
Query: 66 TSYDT-----SSLSTIDADLTSEGFSELPSSTGSTT 96
+ LS+ + F+ S T
Sbjct: 159 RPEYGPRSERTPLSSGKKVMLDLFFTPTSWRYSSET 194
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 31.2 bits (71), Expect = 0.88
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 248 TTITGIPSVITTETTTDASTTEISTTEAAT-------STTEAVSSTTAGSTTETSTVASS 300
T +T ++ T +A++ + T ++T +T VSSTT T T T+
Sbjct: 4 TELTFSYNLSDTTLFPNATSKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNVTVTLHDV 63
Query: 301 TAESTLISSTAASSTTLITTESTMESTTGGKSIESLGPGPQKAC----SLPKDNGPC 353
T ++ L + T S T T TT S P P S+ NG C
Sbjct: 64 TLQAYLSNGT-FSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGNYSVTNGNGTC 119
>gnl|CDD|216141 pfam00833, Ribosomal_S17e, Ribosomal S17.
Length = 122
Score = 30.0 bits (68), Expect = 0.92
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 402 ETSTILLTCDSIMNAVILDDLAVLVPKHLRDRIAVYITR 440
E LT D N I D++A++ K LR++IA Y+T
Sbjct: 18 EKYYSKLTLDFQTNKRICDEVAIIPSKRLRNKIAGYVTH 56
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 31.7 bits (71), Expect = 0.95
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 217 LPARDSTTDASTLTPPTTDTPTTITETTPT--ETTITGIPSVITTETTTDASTTEISTTE 274
L + + A+ T+ P + P E T T + ETTT T + TE
Sbjct: 241 LAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTE 300
Query: 275 AATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKS 332
AA ++T A T + ++ ++ S ++T T ++ + G S
Sbjct: 301 AAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSS 358
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 31.3 bits (70), Expect = 1.2
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 261 TTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITT 320
+ + S++ ++T + STT S+T++ STT TS SS+ ++ ++ AS +LI T
Sbjct: 104 SASGNSSSSANSTSNSNSTTSNNSTTSSNSTTTTSNSTSSSNSTSSGLTSGASVVSLIDT 163
Score = 30.5 bits (68), Expect = 2.3
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 274 EAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSI 333
EA + EA ++ +A + + +++ ++S + + S+T +STT + S+ S+T I
Sbjct: 267 EAILAALEAFANGSASANSTSNSNSTSNSTTNSNSTTTTNSTTSTNSTSSSNSSTIAGCI 326
Query: 334 E 334
+
Sbjct: 327 D 327
Score = 30.1 bits (67), Expect = 2.9
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 255 SVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASS 314
S T+ ST+ +T +T+TT + +ST + S++ +ST+A + + +
Sbjct: 280 SASANSTSNSNSTSNSTTNSNSTTTTNSTTSTNSTSSSNSSTIAGCIDIAANFTIALQNL 339
Query: 315 TTLITTEST 323
L+ E+T
Sbjct: 340 QALLLQEAT 348
>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein;
Provisional.
Length = 408
Score = 30.2 bits (68), Expect = 2.1
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 7/91 (7%)
Query: 217 LPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETT-------TDASTTE 269
P + S T + E T +T T + +
Sbjct: 171 KPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGTPAQPLTPLAAEAQAK 230
Query: 270 ISTTEAATSTTEAVSSTTAGSTTETSTVASS 300
+ T A S T T+ A++
Sbjct: 231 AEVISTPSPVTAAASPTITPHQTQPLPTAAA 261
>gnl|CDD|224664 COG1750, COG1750, Archaeal serine proteases [General function
prediction only].
Length = 579
Score = 30.1 bits (68), Expect = 3.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 295 STVASSTAESTLISSTAASST---TLITTESTMESTTGGKSIESLGPG 339
V SST ISS S+T + T +T+E+T S L P
Sbjct: 517 GEVVSSTGSKETISSPIYSATTQTSTATVTTTIENTVQLGSTAILLPL 564
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 29.5 bits (66), Expect = 3.3
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 216 ILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEA 275
I P + T + P TP P +T + T + + + A
Sbjct: 163 IEPKKPQATAKTEPKPVAQ-TPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPA 221
Query: 276 ATSTTEAVSSTTAGSTTETSTVASSTAESTLISST 310
T+ T A TAG+ + SS L SS+
Sbjct: 222 QTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSS 256
>gnl|CDD|173156 PRK14693, PRK14693, hypothetical protein; Provisional.
Length = 552
Score = 29.7 bits (66), Expect = 3.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 307 ISSTAASSTTLITTESTMESTTGGKSIESLGPGPQKACSLPKDNGPCRDFTVKWF 361
+SS A +S+ + TT +T +GG + + P A + P+ +G R+ V F
Sbjct: 21 LSSAAMTSSAVSTTGTTNTVASGGAAAGAPSFAPPAADAFPQADGAPRNPAVLQF 75
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 29.7 bits (66), Expect = 4.1
Identities = 20/101 (19%), Positives = 38/101 (37%)
Query: 223 TTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEA 282
T DA+ + P ++ PT + + P + + T A +
Sbjct: 1170 TADAAIFSLFGIPAPQLLSSYIPTGSVLYQDPIFTYIPPGIIGMSGTNTFTFKAAQLQLS 1229
Query: 283 VSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTEST 323
+S+ +TT T +SS++ S ST+ ++ ST
Sbjct: 1230 AASSPPAATTPTPPPSSSSSSSAQSISTSPGQIQIVLNGST 1270
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 29.6 bits (66), Expect = 4.1
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 231 PPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGS 290
P +P + SV T A E+ + + + S +
Sbjct: 1144 SVAPAAPVLPAVVSPPVVSAAPAQSVATAVAM--APVAEVPIAVPVQQSVDYMPSVAQAA 1201
Query: 291 TTETSTVASSTAESTLISSTAASS---TTLITTESTMESTTGGKSI---ESLGPGPQKAC 344
+ S V S + ++ A + T ++ E ME+ G SI E LG +
Sbjct: 1202 APQAS-VNDSAIQQVMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIIN 1260
Query: 345 SLPKDN 350
LP+ N
Sbjct: 1261 DLPELN 1266
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 29.6 bits (66), Expect = 4.1
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 4/107 (3%)
Query: 218 PARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDAS----TTEISTT 273
P S + P + T +T ++ V T TTT ++ T +
Sbjct: 181 PTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQ 240
Query: 274 EAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITT 320
+ + + STT+ + T T +T+ + T
Sbjct: 241 RGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTA 287
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
Length = 420
Score = 29.4 bits (66), Expect = 4.4
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 259 TETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLI 318
S S+ T ++ S+T GS+ TS + + ST S + S+T
Sbjct: 323 GGQFNSRSGRTGSSESIRGFTYDS-STTYGGSSYGTSQ---TDSTSTYGSRSTFDSSTGG 378
Query: 319 TTESTMESTTGGKS 332
++S ST GG S
Sbjct: 379 GSQSGGGSTYGGSS 392
Score = 28.3 bits (63), Expect = 9.4
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 260 ETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLIT 319
+ S+ I +STT SS T TST S ST SST S +
Sbjct: 329 RSGRTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSR---STFDSSTGGGSQSGGG 385
Query: 320 TESTMESTTGGKSIES 335
+ ST G S S
Sbjct: 386 STYGGSSTFDGSSRGS 401
>gnl|CDD|233226 TIGR00995, 3a0901s06TIC22, chloroplast protein import component,
Tic22 family. Two families of proteins are involved in
the chloroplast envelope import appartus.They are the
three proteins of the outer membrane (TOC) and four
proteins in the inner membrane (TIC). This family is
specific for the Tic22 protein [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 270
Score = 29.2 bits (65), Expect = 4.9
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 233 TTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGSTT 292
+ + ET T T+ I + + T T T +T +A T E V+ AG T
Sbjct: 25 IKFLLSRLEETKRTAKTLLRIGATLGTIPTFAIGTWLGTTLQALTLPPEEVAKILAG--T 82
Query: 293 ETSTVASSTAESTLIS-STAASSTTLI 318
TV+++ E L S + S L+
Sbjct: 83 SVFTVSNAQNEFVLASDNDGEKSIGLL 109
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 29.3 bits (65), Expect = 5.0
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 226 ASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSS 285
++ TP + + T ++ + +T+ + + S + + ST+ S
Sbjct: 568 STNSTPTGSAASSNTTFSSDSPSTV--VAPSTSPPAGHLGSPPATPSKIVSPSTSPPASH 625
Query: 286 TTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTM 324
+ STT +S +S ST +++ SS + +TES++
Sbjct: 626 LGSPSTTPSSPESSIKVASTE-TASPESSIKVASTESSV 663
Score = 28.5 bits (63), Expect = 8.9
Identities = 19/93 (20%), Positives = 39/93 (41%)
Query: 219 ARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATS 278
A S T S+ +P T P+T + +++ T+ AS +T ++
Sbjct: 577 AASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSP 636
Query: 279 TTEAVSSTTAGSTTETSTVASSTAESTLISSTA 311
+ ++T ++ E+S +ST S + S +
Sbjct: 637 ESSIKVASTETASPESSIKVASTESSVSMVSMS 669
>gnl|CDD|215964 pfam00513, Late_protein_L2, Late Protein L2.
Length = 466
Score = 29.2 bits (66), Expect = 5.5
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 227 STLTPPTTDTPTTITETTPTETTITGI-PSVI-----TTETTTDASTTEISTTEAATSTT 280
T T T + E+T+ PS++ ++ + A I + T
Sbjct: 71 GTRPVRVVGTGTPVRPPVVVESTVGPTDPSIVSLVEESSIIESGAPIPPIPGDGSGFPIT 130
Query: 281 EAVSSTTA----GSTTETSTVASST 301
+ ++T A TT T V+ +
Sbjct: 131 TSSTTTPAILDVTPTTRTVHVSRTQ 155
>gnl|CDD|216105 pfam00761, Polyoma_coat2, Polyomavirus coat protein.
Length = 322
Score = 29.0 bits (65), Expect = 5.7
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 249 TITGI--PSVITTE--TTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTVASSTAES 304
TG+ +++ E +A ++T E ST+EA+++ G T E V A
Sbjct: 19 AATGLSVEAILAGEAFAAIEAQIASLATVEGVLSTSEALAAI--GLTPEAFAVL--QAAP 74
Query: 305 TLISSTAASSTTLITTESTMESTTGGKSIESLG 337
T ++ AA ++ TGG +I + G
Sbjct: 75 TALAGFAA----------LFQTVTGGSAIAASG 97
>gnl|CDD|132198 TIGR03154, sulfolob_CbsA, cytochrome b558/566, subunit A. Members
of this protein family are CbsA, one subunit of a highly
glycosylated, heterodimeric, mono-heme cytochrome
b558/566, found in Sulfolobus acidocaldarius and several
other members of the Sulfolobales, a branch of the
Crenarchaeota.
Length = 465
Score = 29.2 bits (65), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 229 LTPPTTDTPTTITETTPTETTITGIPSV 256
+T P T +T T T+P+ TT + IPS
Sbjct: 413 VTTPPTPPTSTTTSTSPSTTTSSAIPST 440
>gnl|CDD|236140 PRK08026, PRK08026, flagellin; Validated.
Length = 529
Score = 28.9 bits (65), Expect = 5.8
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 222 STTDASTLTPPTTDTPTTITET--TPTETTITGIPSVITTETTTDASTTEISTTEAATST 279
+ A+TLTP T E + + + T TT A +
Sbjct: 248 AADLAATLTPDVGGTAGASYTIKDGTYEVNVDSDGKITLGGSALYIDATGNLTTNNAGAA 307
Query: 280 TEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIE 334
T+A + +E + A + + ++ + + T GK I+
Sbjct: 308 TKATLDALKKTASEGAATAKAALAAAGVTVADGVTAKTVKMSYT---DKNGKVID 359
Score = 28.6 bits (64), Expect = 8.0
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 259 TETTTDASTTEISTTEAATSTTEAVSSTTAGSTTETSTV-----ASSTAESTLISSTAAS 313
T ++TT T + T+ T A A TE T+ +S + T ++ AA+
Sbjct: 377 EITGAISATTTYYTAKDGTTKTAANKLGGADGKTEVVTIDGKTYVASDGKQTTLAEAAAT 436
Query: 314 STT 316
+T
Sbjct: 437 TTE 439
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 29.1 bits (66), Expect = 6.3
Identities = 15/88 (17%), Positives = 24/88 (27%)
Query: 225 DASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVS 284
ST P + P P+ A+ AA + A +
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 285 STTAGSTTETSTVASSTAESTLISSTAA 312
+ A + A+ E T + AA
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTPLRGAAA 125
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 29.0 bits (65), Expect = 6.9
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 9/110 (8%)
Query: 207 TPYGCCPDNILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDAS 266
T YG LP + +A L P P T + + P+ T A+
Sbjct: 344 TSYGQ-----LPLELAVIEAL-LVPVP--APQPAKPTAAAPSPVRPTPAPSTRPKAAAAA 395
Query: 267 TTEISTTEAATSTTEAVSS-TTAGSTTETSTVASSTAESTLISSTAASST 315
T+T V A T A + + T
Sbjct: 396 NIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT 445
>gnl|CDD|237332 PRK13281, PRK13281, succinylarginine dihydrolase; Provisional.
Length = 442
Score = 28.6 bits (65), Expect = 7.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 413 IMNAVILDDLAVLVPKHLRDRIA 435
+MN + D L V +H RDR+
Sbjct: 386 LMNDALFDRLNAWVDRHYRDRLT 408
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 28.7 bits (64), Expect = 7.6
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 229 LTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTA 288
L PPT+ +PT T +P+ ++ + +P+ +T + T+ + A + +
Sbjct: 447 LKPPTSPSPTAPTGVSPSVSSTSSVPA--VPDTAPATAATDAAAPPPANMRPLSPYAVYD 504
Query: 289 GSTTETSTVASSTAESTLISSTAASSTTLITTEST 323
TS ++ SST + T
Sbjct: 505 DLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPT 539
>gnl|CDD|132697 TIGR03658, IsdH_HarA, haptoglobin-binding heme uptake protein HarA.
HarA is a heme-binding NEAT-domain (NEAr Transporter,
pfam05031) protein which has been shown to bind to the
haptoglobin-hemoglobin complex in order to extract heme
from it. HarA has also been reported to bind hemoglobin
directly. HarA (also known as IsdH) contains three NEAT
domains as well as a sortase A C-terminal signal for
localization to the cell wall. The heme bound at the
third of these NEAT domains has been shown to be
transferred to the IsdA protein also localized at the
cell wall, presumably through an additional specific
protein-protein interaction. Haptoglobin is a hemoglobin
carrier protein involved in scavenging hemoglobin in the
blood following red blood cell lysis and targetting it
to the liver.
Length = 895
Score = 28.7 bits (63), Expect = 7.9
Identities = 19/96 (19%), Positives = 38/96 (39%)
Query: 231 PPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAGS 290
P D ++T T S + +T T+ S ST A + +A ++ + +
Sbjct: 222 PIYNDPSLVKSDTNDAVVTNDQSSSDASNQTNTNTSNQNTSTINNANNQPQATTNMSQPA 281
Query: 291 TTETSTVASSTAESTLISSTAASSTTLITTESTMES 326
++S A + + + +T T ES+ +S
Sbjct: 282 QPKSSANADQASSQPAHETNSNGNTNDKTNESSNQS 317
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 28.4 bits (63), Expect = 8.0
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 222 STTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEIS----TTEAAT 277
S + T T ++ T TP + + TTT + + T A T
Sbjct: 128 SASITKTSNGSDAATTSS-TANTPAAAKVLKANAASAPNTTTGVGSAATTAAISATTATT 186
Query: 278 STTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIESLG 337
TT T +T A++ A+++ + AS+ + + ++T+ I +
Sbjct: 187 PTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVPQNTSMLAQIPNPT 246
Query: 338 P 338
P
Sbjct: 247 P 247
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 28.3 bits (63), Expect = 8.1
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 220 RDSTTDASTLTPPTTD----TPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEA 275
+ T P T TPT +P S + ++ ++ S T A
Sbjct: 76 KPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESAT------A 129
Query: 276 ATSTTEAVSSTTAGSTTETSTVASSTAESTL 306
+ + S ++GS ++ V S E+T+
Sbjct: 130 TAPESPSTSVPSSGSDAASTLVVGSERETTI 160
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 28.2 bits (63), Expect = 8.9
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 14/110 (12%)
Query: 230 TPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTE--------------ISTTEA 275
+ D P T+ + ETT T E+ ++ + E
Sbjct: 51 SNEEADQPNTLNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLPNQEP 110
Query: 276 ATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTME 325
A S + + + + S I T + + + S+ E
Sbjct: 111 AYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSE 160
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 28.7 bits (64), Expect = 9.2
Identities = 15/85 (17%), Positives = 24/85 (28%)
Query: 230 TPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAVSSTTAG 289
T T P T + E T A T +S E A ++
Sbjct: 341 TESTVSLKNGDPVVNPVSTDKKQLEYCCRRELTVSADTIVVSILEEALASKFVFFEVIKP 400
Query: 290 STTETSTVASSTAESTLISSTAASS 314
TET + + A + + +
Sbjct: 401 LPTETGSDSWVEASFPVGHKYSGTE 425
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.123 0.353
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,109,203
Number of extensions: 1744978
Number of successful extensions: 3031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2160
Number of HSP's successfully gapped: 322
Length of query: 456
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 356
Effective length of database: 6,502,202
Effective search space: 2314783912
Effective search space used: 2314783912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (27.3 bits)