RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10173
(456 letters)
>1bun_B BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A
{Bungarus multicinctus} SCOP: g.8.1.1
Length = 61
Score = 94.7 bits (236), Expect = 2e-24
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
C P D C+ ++Y C +F YGGC GNGN FKS CR C+E
Sbjct: 4 HPDCDKPPDTKICQTVVRAFYYK-PSAKRCVQFRYGGCNGNGNHFKSDHLCRCECLE 59
>4dtg_K Tissue factor pathway inhibitor; antibody, blood coagulation, blood
clotting inhib immune system complex; HET: MES PGE;
1.80A {Homo sapiens} PDB: 1tfx_C
Length = 66
Score = 94.7 bits (236), Expect = 2e-24
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 340 PQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEPS 399
C L +D G CR + ++FY+ C RF YGGC GN N F++ EEC+ +C +
Sbjct: 3 KPDFCFLEEDPGICRGYITRYFYN-NQTKQCERFKYGGCLGNMNNFETLEECKNICEDGH 61
Query: 400 GK 401
Sbjct: 62 HH 63
>1bf0_A Calcicludine; calcium channel blocker; NMR {Dendroaspis
angusticeps} SCOP: g.8.1.1
Length = 60
Score = 93.5 bits (233), Expect = 5e-24
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 340 PQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
P C P G C+ +++ C F + GC GN NRF++ ECR C+
Sbjct: 3 PPWYCKEPVRIGSCKKQFSSFYFK-WTAKKCLPFLFSGCGGNANRFQTIGECRKKCL 58
>2kcr_A Anntoxin; protein; NMR {Hyla annectans}
Length = 61
Score = 93.2 bits (232), Expect = 7e-24
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 338 PGPQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
P C L ++ G ++YD C F Y G GNGNRFK+ E+C A CV
Sbjct: 1 PAQDYRCQLSRNYGKGSGSFTNYYYD-KATSSCKTFRYRGSGGNGNRFKTLEDCEATCVT 59
Query: 398 P 398
Sbjct: 60 A 60
>1jc6_A Venom basic protease inhibitors IX and VIIIB; snake venom, kunitz
inhibitor, neurotoxin, solution structure, BF IX,
chymotrypsin inhibitor; NMR {Bungarus fasciatus} SCOP:
g.8.1.1
Length = 65
Score = 92.8 bits (231), Expect = 1e-23
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEPSG 400
C+L + G C ++Y+ C +F YGGC GN N FK+ +EC+ C G
Sbjct: 4 PTFCNLLPETGRCNALIPAFYYN-SHLHKCQKFNYGGCGGNANNFKTIDECQRTCAAKYG 62
Query: 401 KET 403
+ +
Sbjct: 63 RSS 65
>1dtk_A Dendrotoxin K; presynaptic neurotoxin; NMR {Dendroaspis polylepis
polylepis} SCOP: g.8.1.1
Length = 57
Score = 92.3 bits (230), Expect = 1e-23
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
K C LP GPC+ ++Y C F Y GC GN NRFK+ EECR CV
Sbjct: 2 AKYCKLPLRIGPCKRKIPSFYYK-WKAKQCLPFDYSGCGGNANRFKTIEECRRTCV 56
>1dtx_A Alpha-dendrotoxin; presynaptic neurotoxin; 2.20A {Dendroaspis
angusticeps} SCOP: g.8.1.1 PDB: 1dem_A 1den_A
Length = 59
Score = 91.6 bits (228), Expect = 3e-23
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
+K C L ++ G C D ++Y+ C RF + GC GN NRFK+ EECR C+
Sbjct: 4 RKLCILHRNPGRCYDKIPAFYYN-QKKKQCERFDWSGCGGNSNRFKTIEECRRTCI 58
>3m7q_B Kunitz-type proteinase inhibitor SHPI-1; trypsin-inhibitor complex,
kunitz-type serine-protease inhib digestion, disulfide
bond; 1.70A {Stichodactyla helianthus} PDB: 3ofw_A
1shp_A
Length = 61
Score = 91.2 bits (227), Expect = 4e-23
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 339 GPQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEP 398
CS PK G C+ + ++++D + G C F YGGC GNGN F++ +CRA+C
Sbjct: 2 AEASICSEPKKVGRCKGYFPRFYFD-SETGKCTPFIYGGCGGNGNNFETLHQCRAICRAL 60
>1adz_A TFPI, EPI, LACI, tissue factor pathway inhibitor; hydrolase,
coagulation; NMR {Homo sapiens} SCOP: g.8.1.1
Length = 71
Score = 91.3 bits (227), Expect = 4e-23
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEP 398
C L +D G CR + ++FY+ C RF YGGC GN N F++ EEC+ +C +
Sbjct: 14 CFLEEDPGICRGYITRYFYN-NQTKQCERFKYGGCLGNMNNFETLEECKNICEDG 67
>2ddi_A WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain
containing 1; kunitz domain, protein binding; NMR {Homo
sapiens} PDB: 2ddj_A
Length = 70
Score = 91.3 bits (227), Expect = 5e-23
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEPSG 400
AC LP GPCR + +W Y C+ F YGGCEGNGN F S+E C C
Sbjct: 7 TDACVLPAVQGPCRGWEPRWAYS-PLLQQCHPFVYGGCEGNGNNFHSRESCEDACPVVDH 65
Query: 401 K 401
Sbjct: 66 H 66
>1kth_A Collagen alpha 3(VI) chain; anisotropic refinement, kunitz
inhibitor, extracellular matrix, connective tissue,
structural protein; 0.95A {Homo sapiens} SCOP: g.8.1.1
PDB: 1knt_A 1kun_A 2knt_A
Length = 58
Score = 90.4 bits (225), Expect = 7e-23
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C LPKD G CRDF +KW+YD + C RFWYGGC GN N+F SQ+EC VC
Sbjct: 5 CKLPKDEGTCRDFILKWYYD-PNTKSCARFWYGGCGGNENKFGSQKECEKVC 55
>1irh_A Tissue factor pathway inhibitor; non-protease inhibitor, kunitz
domain, protein binding; NMR {Homo sapiens} SCOP:
g.8.1.1
Length = 61
Score = 90.0 bits (224), Expect = 9e-23
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 340 PQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
C P D G CR +++Y+ V G C F Y GC GN N F S++EC C +
Sbjct: 4 GPSWCLTPADRGLCRANENRFYYNSVI-GKCRPFKYSGCGGNENNFTSKQECLRACKK 60
>1yc0_I Kunitz-type protease inhibitor 1; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens}
Length = 75
Score = 90.5 bits (225), Expect = 1e-22
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 338 PGPQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
+ C G CR +W+YD C F YGGC GN N + +EEC C
Sbjct: 16 HQTEDYCLASNKVGRCRGSFPRWYYD-PTEQICKSFVYGGCLGNKNNYLREEECILAC 72
>1y62_A Conkunitzin-S1; alpha helix, beta sheet, 310 helix, kunitz fold,
toxin; 2.45A {Synthetic} PDB: 1yl2_A 2ca7_A 2j6d_A
Length = 60
Score = 90.0 bits (224), Expect = 1e-22
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
C LP D+G + +Y+ C RF Y G GN N F+ +C+ C+
Sbjct: 7 CDLPADSGSGTKAEKRIYYN-SARKQCLRFDYTGQGGNENNFRRTYDCQRTCL 58
>1aap_A Alzheimer'S disease amyloid A4 protein; proteinase inhibitor
(trypsin); 1.50A {Homo sapiens} SCOP: g.8.1.1 PDB:
1taw_B 1brc_I 1zjd_B 3l3t_E 1ca0_D 3l33_E
Length = 58
Score = 90.0 bits (224), Expect = 1e-22
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
++ CS + GPCR +W++D V G C F+YGGC GN N F ++E C AVC
Sbjct: 2 REVCSEQAETGPCRAMISRWYFD-VTEGKCAPFFYGGCGGNRNNFDTEEYCMAVC 55
>1g6x_A Pancreatic trypsin inhibitor; serine protease inhibitor, hydrolase
inhibitor; 0.86A {Bos taurus} SCOP: g.8.1.1 PDB: 1k6u_A
1qlq_A 4tpi_I 1ld5_A 3btq_I 3bth_I 1t8m_B 5pti_A 1b0c_A
1bhc_A* 1bth_P 1bz5_A 1bzx_I 1cbw_D 1d0d_B 1eaw_B 1fy8_I
1mtn_D 1oa5_5 1oa6_5 ...
Length = 58
Score = 89.6 bits (223), Expect = 1e-22
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C P G CR +++FY+ G C F YGGC N FKS E+C C
Sbjct: 5 CLEPPYAGACRARIIRYFYN-AKAGLCQTFVYGGCRAKRNNFKSAEDCLRTC 55
>1zr0_B TFPI-2, tissue factor pathway inhibitor 2, PP5; serine protease,
complex of serine protease/inhibitor, kunitz type
inhibitor; 1.80A {Homo sapiens} SCOP: g.8.1.1
Length = 63
Score = 89.3 bits (222), Expect = 2e-22
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEP 398
+ C LP D GPCR ++++YD C +F YGGCEGN N F + E C C
Sbjct: 6 AEICLLPLDYGPCRALLLRYYYD-RYTQSCRQFLYGGCEGNANNFYTWEACDDACWRI 62
>3byb_A Textilinin, textilinin-1; BPTI-like, beta hairpin, kunitz-type
protease inhibitor, trypsin, plasmin, hydrolase
inhibitor; 1.63A {Pseudonaja textilis textilis} PDB:
3d65_I
Length = 59
Score = 88.9 bits (221), Expect = 3e-22
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C LP D GPCR ++Y+ D C F YGGCEGN N F ++EEC + C
Sbjct: 7 CELPADTGPCRVRFPSFYYN-PDEKKCLEFIYGGCEGNANNFITKEECESTC 57
>3aug_A BPTI, bovine pancreatic trypsin inhibitor; serine protease
inhibitor, inhibits serine protease, trypsin hydrolase
inhibitor; 1.40A {Bos taurus} PDB: 3aue_A 3auc_A 3aud_A
1f7z_I 1f5r_I 3tgi_I 3tgj_I 3tgk_I
Length = 65
Score = 88.9 bits (221), Expect = 3e-22
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEPSG 400
C P GP + +++FY+ G F YGG N F S + A C G
Sbjct: 5 CLEPPYAGPGKARIIRYFYN-AAAGAAQAFVYGGVRAKRNNFASAADALAACAAAGG 60
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine
protease/inhibitor), hydrolase/hydrolase inhibitor
complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Length = 99
Score = 89.2 bits (221), Expect = 5e-22
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 317 LITTESTMESTTGGKSIESLGPGPQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYG 376
L+ + ST G + C P GPC+ +++FY+ G C F YG
Sbjct: 12 LVLLGTLAASTPGCDTSNQAKAQRPDFCLEPPYTGPCKARIIRYFYNAKA-GLCQTFVYG 70
Query: 377 GCEGNGNRFKSQEECRAVCVEPSG 400
GC N FKS E+C C G
Sbjct: 71 GCRAKRNNFKSAEDCMRTCGGAIG 94
>3aub_A BPTI, bovine pancreatic trypsin inhibitor; serine protease
inhibitor, hydrolase inhibitor; 1.00A {Bos taurus} PDB:
3aui_A 3auh_A 3ci7_A
Length = 58
Score = 86.9 bits (216), Expect = 1e-21
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C P GP + +++FY+ G F YGG N F S + A C
Sbjct: 5 CLEPPYAGPGKARIIRYFYN-AAAGAAQAFVYGGVRAKRNNFASAADALAAC 55
>2jot_A Huwentoxin-11; proteinase inhibitor; NMR {Ornithoctonus huwena}
Length = 55
Score = 86.5 bits (215), Expect = 2e-21
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
C LP D G C+ +W+++G C +F YGGC GNGN+F +QE C C +
Sbjct: 4 CRLPSDRGRCKASFERWYFNG---RTCAKFIYGGCGGNGNKFPTQEACMKRCAK 54
>2ody_E Boophilin; kunitz-type thrombin inhibitor, blood clotting-blood
clottin inhibitor complex; HET: NAG; 2.35A
{Rhipicephalus microplus}
Length = 127
Score = 86.1 bits (213), Expect = 2e-20
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C D+G C +WFY+ G C F YGGC GN N ++S+EEC VC
Sbjct: 74 CEPAADSGSCAGQLERWFYNVQS-GECETFVYGGCGGNDNNYESEEECELVC 124
Score = 83.0 bits (205), Expect = 2e-19
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
C LP D G C+ +++++ G C F YGGC GN N F++ EEC+ C
Sbjct: 6 CRLPADEGICKALIPRFYFNTET-GKCTMFSYGGCGGNENNFETIEECQKAC 56
>1bik_A Bikunin; glycoprotein, trypstatin, urinary trypsin inhibitor
acid-rich protein, serine protease inhibitor (kunitz
type), glycosylated protein; HET: NAG; 2.50A {Homo
sapiens} SCOP: g.8.1.1 g.8.1.1
Length = 147
Score = 85.4 bits (211), Expect = 5e-20
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 325 ESTTGGKSIESLGPGPQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNR 384
E +GG + + + +C L GPC T ++FY+G C F YGGC GNGN
Sbjct: 7 EEGSGGGQLVTEVTKKEDSCQLGYSAGPCMGMTSRYFYNGTS-MACETFQYGGCMGNGNN 65
Query: 385 FKSQEECRAVC 395
F +++EC C
Sbjct: 66 FVTEKECLQTC 76
Score = 70.8 bits (173), Expect = 6e-15
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEPSGKET 403
C+LP GPCR F W +D V G C F YGGC+GNGN+F S++ECR C P +
Sbjct: 82 CNLPIVRGPCRAFIQLWAFDAVK-GKCVLFPYGGCQGNGNKFYSEKECREYCGVPGDGDE 140
Query: 404 STI 406
+
Sbjct: 141 ELL 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-08
Identities = 80/525 (15%), Positives = 142/525 (27%), Gaps = 180/525 (34%)
Query: 20 TSTVLSTTEGSTSTPLEKTTVTDLTSE--GF--SEL-PSSTGSTTEV-STITTSYDTSSL 73
+ TEG + E TT +L + G+ S + PS G +V + T ++ L
Sbjct: 38 NKILPEPTEGFAA-DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 74 STID-----ADLTSEGFSELPSSTGSTTEVSTITTSYDTSSLSTIDSTTTLNPLQTAIVK 128
D A L L + + + + +Y ++ +A+ +
Sbjct: 97 EGNDIHALAAKL-------LQENDTTLVKTKELIKNY-ITARIMAKRPFD-KKSNSALFR 147
Query: 129 EVTLKKCKTKKPKKPKCDTTEFG------CCFD---GITAAKGPFSAALSPDFSKGCKPE 179
V + FG F+ + L ++
Sbjct: 148 AVGEGNAQL---------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 180 CAESPHGCCDDNVTAAHGPYKEGCCLNTPYGCCPDNILPARDSTTDASTLTPPTTDTPTT 239
+ A + +G NIL L P
Sbjct: 199 IRTTLD---------AEKVFTQGL-----------NIL---------EWLENP------- 222
Query: 240 ITETTPTETTITGIP-SV-----------ITTETTTDASTTEI-STTEAATSTTEAV--S 284
TP + + IP S + T + E+ S + AT ++ + +
Sbjct: 223 --SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 285 STTAGSTTETS-TVASSTAESTL----ISSTAASSTTLITTESTMESTTGGKSIESLGPG 339
A + + S V+ A + L + A T + +S + + P
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV----PS 336
Query: 340 PQKACS-----------------LPKD--------NGPCRDFTVKWFYDG--VD-YGGCN 371
P + S LP NG ++ V G YG
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVS----GPPQSLYGLNL 391
Query: 372 RFWYGGCEGNGNRFKSQEECRAVCVEPSGKETSTI-------------L-LTC---DSIM 414
R PSG + S I L + ++
Sbjct: 392 TL------------------RKAKA-PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 415 ---NAVILDDLA----VLVPKHLRDRIAVYITRNG-NVRSNSKHL 451
+ +I DL K ++ I VY T +G ++R S +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQ--IPVYDTFDGSDLRVLSGSI 475
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics,
protein structure initiative, PSI, NESG; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Length = 62
Score = 33.4 bits (77), Expect = 0.011
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 408 LTCDSIMNAVILDDLAVLVPKHLRDRIAVYITR 440
T D N ++++ + + KHLR++IA YITR
Sbjct: 24 FTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITR 56
>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
carbohydrate; HET: AFO; 2.00A {Mycobacterium
tuberculosis}
Length = 406
Score = 31.5 bits (71), Expect = 0.61
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 2/80 (2%)
Query: 224 TDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTEAV 283
+A L P T + T GIP+ +T + + +
Sbjct: 43 PNAGMLAPVTAPLADALGAGLSEAFTPNGIPADVTADPVMERPGD--RSFLNDDGLITGS 100
Query: 284 SSTTAGSTTETSTVASSTAE 303
T G TT + S A
Sbjct: 101 EPGTEGGTTAAPGINGSRAR 120
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 15/39 (38%)
Query: 179 ECAESPHGCCDDNVTAAHGPYKEGCCLNTP--YGC-CPD 214
EC+ P C C N P + C CP+
Sbjct: 5 ECSLKPSICGT------------AVCKNIPGDFECECPE 31
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A
{Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Length = 276
Score = 28.9 bits (63), Expect = 3.2
Identities = 15/77 (19%), Positives = 21/77 (27%)
Query: 275 AATSTTEAVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTESTMESTTGGKSIE 334
AA + + S T + S S S A+ T + +
Sbjct: 2 AAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFA 61
Query: 335 SLGPGPQKACSLPKDNG 351
S SLP D G
Sbjct: 62 SKQSLSYLDGSLPGDYG 78
>2ich_A Putative ATTH; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, lipid
binding protein; HET: NHE; 2.00A {Nitrosomonas europaea}
SCOP: b.176.1.1
Length = 335
Score = 28.8 bits (63), Expect = 4.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 340 PQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYG 376
P KA P+D G DF ++W+Y G
Sbjct: 8 PGKALEFPQDFGAHNDFRIEWWYVTGWLETPTGKPLG 44
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 28.4 bits (64), Expect = 5.4
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 265 ASTTEIS-TTEAATSTTEAVSSTTAGSTTETSTVASSTAE-STLISSTAASSTTL 317
A+ E + + T+ + T V + E S + T+
Sbjct: 240 AAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTI 294
Score = 28.0 bits (63), Expect = 5.6
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 253 IPSVITTETTTDASTTEIS-TTEAATSTTEAVSSTT----------AGSTTETSTVASST 301
+ V T + S EIS E T+ +S + S ET+ +
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 302 AESTLISSTAASSTTLITTESTMESTTGGKSIES 335
+ +T + +A +ST + G +++
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKK 97
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_V
Length = 130
Score = 27.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 408 LTCDSIMNAVILDDLAVLVPKHLRDRIAVYITR 440
LT D N IL ++A + K LR++IA + T
Sbjct: 24 LTNDFHFNKKILSEVAQVPSKRLRNKIAGFATH 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.123 0.353
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,993,420
Number of extensions: 337909
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 113
Length of query: 456
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 359
Effective length of database: 3,993,456
Effective search space: 1433650704
Effective search space used: 1433650704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (26.5 bits)