RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10173
         (456 letters)



>d1bunb_ g.8.1.1 (B:) beta2-bungarotoxin, neurotoxin chain
           {Many-banded krait (Bungarus multicinctus) [TaxId:
           8616]}
          Length = 61

 Score = 85.3 bits (211), Expect = 2e-21
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
           C  P D   C+     ++Y       C +F YGGC GNGN FKS   CR  C+E
Sbjct: 7   CDKPPDTKICQTVVRAFYYK-PSAKRCVQFRYGGCNGNGNHFKSDHLCRCECLE 59


>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor
           complex {Human (Homo sapiens) [TaxId: 9606]}
          Length = 56

 Score = 84.1 bits (208), Expect = 4e-21
 Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 343 ACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
           AC+LP   GPCR F   W +D    G C  F YGGC+GNGN+F S++ECR  C
Sbjct: 3   ACNLPIVRGPCRAFIQLWAFD-AVKGKCVLFPYGGCQGNGNKFYSEKECREYC 54


>d1dtxa_ g.8.1.1 (A:) alpha-Dendrotoxin {Green mamba (Dendroaspis
           angusticeps) [TaxId: 8618]}
          Length = 59

 Score = 83.7 bits (207), Expect = 6e-21
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
           +K C L ++ G C D    ++Y+      C RF + GC GN NRFK+ EECR  C+
Sbjct: 4   RKLCILHRNPGRCYDKIPAFYYNQKK-KQCERFDWSGCGGNSNRFKTIEECRRTCI 58


>d1dtka_ g.8.1.1 (A:) Dendrotoxin K {Black mamba (Dendroaspis
           polylepis polylepis) [TaxId: 8620]}
          Length = 57

 Score = 83.7 bits (207), Expect = 6e-21
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 342 KACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
           K C LP   GPC+     ++Y       C  F Y GC GN NRFK+ EECR  CV
Sbjct: 3   KYCKLPLRIGPCKRKIPSFYYK-WKAKQCLPFDYSGCGGNANRFKTIEECRRTCV 56


>d1bf0a_ g.8.1.1 (A:) Calcicludine (cac) {Green mamba (Dendroaspis
           angusticeps) [TaxId: 8618]}
          Length = 60

 Score = 83.8 bits (207), Expect = 6e-21
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 340 PQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
           P   C  P   G C+     +++       C  F + GC GN NRF++  ECR  C+
Sbjct: 3   PPWYCKEPVRIGSCKKQFSSFYFKWTA-KKCLPFLFSGCGGNANRFQTIGECRKKCL 58


>d1jc6a_ g.8.1.1 (A:) Venom basic protease inhibitor IX (VIIIb)
           {Banded krait (Bungarus fasciatus) [TaxId: 8613]}
          Length = 65

 Score = 83.8 bits (207), Expect = 7e-21
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVEPSGKET 403
           C+L  + G C      ++Y+      C +F YGGC GN N FK+ +EC+  C    G+ +
Sbjct: 7   CNLLPETGRCNALIPAFYYNSHL-HKCQKFNYGGCGGNANNFKTIDECQRTCAAKYGRSS 65


>d1aapa_ g.8.1.1 (A:) Alzheimer's amyloid B-protein precursor, APPI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 56

 Score = 82.6 bits (204), Expect = 2e-20
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 341 QKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
           ++ CS   + GPCR    +W++D  + G C  F+YGGC GN N F ++E C AVC
Sbjct: 2   REVCSEQAETGPCRAMISRWYFDVTE-GKCAPFFYGGCGGNRNNFDTEEYCMAVC 55


>d1tfxc_ g.8.1.1 (C:) Tissue factor pathway inhibitor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 58

 Score = 81.4 bits (201), Expect = 4e-20
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
           C L +D G CR +  ++FY+      C RF YGGC GN N F++ EEC+ +C +
Sbjct: 5   CFLEEDPGICRGYITRYFYNNQT-KQCERFKYGGCLGNMNNFETLEECKNICED 57


>d1irha_ g.8.1.1 (A:) Tissue factor pathway inhibitor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 61

 Score = 81.4 bits (201), Expect = 5e-20
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 340 PQKACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCVE 397
               C  P D G CR    +++Y+ V  G C  F Y GC GN N F S++EC   C +
Sbjct: 4   GPSWCLTPADRGLCRANENRFYYNSVI-GKCRPFKYSGCGGNENNFTSKQECLRACKK 60


>d1zr0b1 g.8.1.1 (B:1A-59) Tissue factor pathway inhibitor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 80.7 bits (199), Expect = 8e-20
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVCV 396
           C LP D GPCR   ++++YD      C +F YGGCEGN N F + E C   C 
Sbjct: 9   CLLPLDYGPCRALLLRYYYDRYT-QSCRQFLYGGCEGNANNFYTWEACDDACW 60


>d1ktha_ g.8.1.1 (A:) Collagen type VI (domain C5 from alpha 3
           chain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 80.3 bits (198), Expect = 9e-20
 Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
           C LPKD G CRDF +KW+YD  +   C RFWYGGC GN N+F SQ+EC  VC
Sbjct: 5   CKLPKDEGTCRDFILKWYYD-PNTKSCARFWYGGCGGNENKFGSQKECEKVC 55


>d1g6xa_ g.8.1.1 (A:) Pancreatic trypsin inhibitor, BPTI {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 58

 Score = 80.3 bits (198), Expect = 1e-19
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
           C  P   G CR   +++FY+    G C  F YGGC    N FKS E+C   C
Sbjct: 5   CLEPPYAGACRARIIRYFYNAKA-GLCQTFVYGGCRAKRNNFKSAEDCLRTC 55


>d1shpa_ g.8.1.1 (A:) Trypsin inhibitor {Sea anemone (Stichodactyla
           helianthus) [TaxId: 6123]}
          Length = 55

 Score = 79.9 bits (197), Expect = 1e-19
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 344 CSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
           CS PK  G C+ +  ++++D    G C  F YGGC GNGN F++  +CRA+C
Sbjct: 3   CSEPKKVGRCKGYFPRFYFDSET-GKCTPFIYGGCGGNGNNFETLHQCRAIC 53


>d1bika1 g.8.1.1 (A:25-78) Bikunin from inter-alpha-inhibitor
           complex {Human (Homo sapiens) [TaxId: 9606]}
          Length = 54

 Score = 79.5 bits (196), Expect = 2e-19
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 343 ACSLPKDNGPCRDFTVKWFYDGVDYGGCNRFWYGGCEGNGNRFKSQEECRAVC 395
           +C L    GPC   T ++FY+G     C  F YGGC GNGN F +++EC   C
Sbjct: 1   SCQLGYSAGPCMGMTSRYFYNGTS-MACETFQYGGCMGNGNNFVTEKECLQTC 52


>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 62

 Score = 31.5 bits (72), Expect = 0.022
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 408 LTCDSIMNAVILDDLAVLVPKHLRDRIAVYITR 440
            T D   N  ++++ + +  KHLR++IA YITR
Sbjct: 24  FTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITR 56


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 30.7 bits (69), Expect = 0.41
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 222 STTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTTEAATSTTE 281
                      + +   +   T     + T   S  T+ + T  S    +    A+    
Sbjct: 248 IVHVDMENIILSKNEDQSTQNTD----SETRTISKNTSTSRTHTSEVHGNAEVHASFFDI 303

Query: 282 AVSSTTAGSTTETSTVASSTAESTLISSTAASSTTLITTES 322
             S +   S + +STVA   + S     T A +  L T ++
Sbjct: 304 GGSVSAGFSNSNSSTVAIDHSLSLAGERTWAETMGLNTADT 344


>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 328

 Score = 30.1 bits (67), Expect = 0.60
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 8/37 (21%)

Query: 340 PQKACSLPKDNGPCRDFTVKWFY--------DGVDYG 368
           P KA   P+D G   DF ++W+Y         G   G
Sbjct: 6   PGKALEFPQDFGAHNDFRIEWWYVTGWLETPTGKPLG 42


>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 53

 Score = 26.1 bits (57), Expect = 1.3
 Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 8/49 (16%)

Query: 179 ECAESPHGCCDDNVTAAHGPYKEGCCLNTP--YGC-CPDNILPARDSTT 224
           ECA       +D       P  +  C N    Y C C        D  +
Sbjct: 6   ECASRSKSGEED-----PQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS 49


>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 25.9 bits (57), Expect = 1.5
 Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 15/49 (30%)

Query: 179 ECAESPHGCCDDNVTAAHGPYKEGCCLNTP--YGC-CPDNILPARDSTT 224
           EC E P  C              G C+NT   + C CP       D+  
Sbjct: 5   ECQELPGLCQG------------GKCINTFGSFQCRCPTGYYLNEDTRV 41


>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
           {Escherichia coli [TaxId: 562]}
          Length = 439

 Score = 28.9 bits (65), Expect = 1.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 413 IMNAVILDDLAVLVPKHLRDRIA 435
           +MN  + + L   V ++ RDR+ 
Sbjct: 383 MMNDTLFNALNDWVDRYYRDRLT 405


>d1qexa_ b.32.1.1 (A:) gp9 {Bacteriophage T4 [TaxId: 10665]}
          Length = 288

 Score = 27.5 bits (61), Expect = 2.9
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 5/126 (3%)

Query: 214 DNILPARDSTTDASTLTPPTTDTPTTITETTPTETTITGIPSVITTETTTDASTTEISTT 273
           D    A  + T A       T      + T        G  +    +T+T      I   
Sbjct: 44  DQRKMAVANGTGADGQIIHATGYYQKHSITEYATPVKVG--TRHDIDTSTVGVKVIIERG 101

Query: 274 EAATSTTEAVSSTTAGSTTETSTVASST---AESTLISSTAASSTTLITTESTMESTTGG 330
           E         S+ +   T   +  A  +       L+ ++  S  TL    S   ++   
Sbjct: 102 ELGDCVEFINSNGSISVTNPLTIQAIDSIKGVSGNLVVTSPYSKVTLRCISSDNSTSVWN 161

Query: 331 KSIESL 336
            SIES+
Sbjct: 162 YSIESM 167


>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 42

 Score = 24.8 bits (54), Expect = 3.3
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 15/49 (30%)

Query: 179 ECAESPHGCCDDNVTAAHGPYKEGCCLNTP--YGC-CPDNILPARDSTT 224
           EC   P  C              G C NT   Y C CP     + + + 
Sbjct: 4   ECQRDPLLCRG------------GVCHNTEGSYRCECPPGHQLSPNISA 40


>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor
           {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
          Length = 60

 Score = 24.6 bits (53), Expect = 6.0
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 366 DYGGCNRFWYGGCEGNG-NRFKSQEECRAVCV 396
             GGC+ FW    +  G + + S  +C   C+
Sbjct: 29  GKGGCDSFWICPEDHTGADYYSSYRDCFNACI 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.123    0.353 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,451,400
Number of extensions: 65050
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 53
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.9 bits)