BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10177
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 89/106 (83%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
+VLLRDGRTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE+D
Sbjct: 19 LVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEID 78
Query: 61 KEKEHCPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLSF 106
EKE LQQVS+E+IL QR EQ+ K E ++ + LK+RGLS
Sbjct: 79 LEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSI 124
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2
SV=1
Length = 133
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 89/106 (83%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
+VLLRDGRTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE+D
Sbjct: 19 LVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEID 78
Query: 61 KEKEHCPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLSF 106
EKE LQQVS+E+IL QR EQ+ K E ++ + LK+RGLS
Sbjct: 79 LEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSI 124
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 89/106 (83%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
+VLLRDGRTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE+D
Sbjct: 19 LVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEID 78
Query: 61 KEKEHCPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLSF 106
EKE LQQVS+E+IL QR +Q+ + E ++ + LK+RGLS
Sbjct: 79 LEKESDTPLQQVSIEEILEEQRVQQQTRLEAEKLKVQTLKDRGLSI 124
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
+V+LRDG+ LIG LRS DQFANL+L TIERI+V + YGDI RG++I+RGENVVL+GE+D
Sbjct: 25 IVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELD 84
Query: 61 KEKEH--CPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLSFVPDLINDDLF 116
+KE+ QL+++ E++ + +E K++ R K L G S D +DDL+
Sbjct: 85 LDKEYDAVKQLRRMPAEELYPLAKLHEEEKKKNIREKGKYLHSVGFSV--DGGHDDLY 140
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium
discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 80/117 (68%), Gaps = 2/117 (1%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
+V+LRDGR IG +R+ DQFAN+VL TIERI+VG+ Y D G+F IRG+NVV++GE+D
Sbjct: 14 IVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEID 73
Query: 61 KEKE-HCPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLSFVPDLINDDLF 116
+KE +L+++S ++I A E+ K+E ++ + + E GL+ + ++N D F
Sbjct: 74 PDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKRRIMTESGLT-IDSILNIDDF 129
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVG--NQYGDIPRGIFIIRGENVVLMGE 58
VLLRDGR L G LR+ DQ+ANL+L +ERI+ N+Y + RGIF+IRGENVV++GE
Sbjct: 55 FVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVMLGE 114
Query: 59 VDKEKEHCP--QLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLSFVPDLINDDLF 116
VD +KE P ++++ ++ ++K E + + K++ G+ V D D++
Sbjct: 115 VDIDKEDQPLEAMERIPFKEAWLTKQKNDEKRFKEETHKGKKMARHGI--VYDFHKSDMY 172
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
+VL DGR++IG LR +DQ N+VL K ER++ IP G+ +I+G++V ++GEVD
Sbjct: 13 LVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGDDVAVIGEVD 72
Query: 61 KEKEHCPQLQQVSVE 75
E + L+++ E
Sbjct: 73 DELDKKLNLKEIIAE 87
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGD-IPRGIFIIRGENVVLMGEVD 60
V+ DGR ++G L+ DQ NL+L ++ ER+ +Q + + G++I+RG+NV ++GE+D
Sbjct: 15 VITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
Query: 61 KEKEHCPQLQQVSVE 75
+E + L + E
Sbjct: 75 EETDSALDLGNIRAE 89
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGD-IPRGIFIIRGENVVLMGEVD 60
V+ DGR ++G L+ DQ NL+L ++ ER+ +Q + + G++I+RG+NV ++GE+D
Sbjct: 15 VITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
Query: 61 KEKEHCPQLQQVSVE 75
+E + L + E
Sbjct: 75 EETDSALDLGNIRAE 89
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGD-IPRGIFIIRGENVVLMGEVD 60
V+ DGR ++G L+ DQ NL+L ++ ER+ +Q + + G++I+RG+NV ++GE+D
Sbjct: 15 VITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
Query: 61 KEKEHCPQLQQVSVE 75
+E + L + E
Sbjct: 75 EETDSALDLGNIRAE 89
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGD-IPRGIFIIRGENVVLMGEVD 60
V+ DGR ++G L+ DQ NL+L ++ ER+ +Q + + G++I+RG+NV ++GE+D
Sbjct: 15 VITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
Query: 61 KEKEHCPQLQQVSVE 75
+E + L + E
Sbjct: 75 EETDSALDLGNIRAE 89
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-YGDIPRGIFIIRGENVVLMGEVD 60
V+ DGR ++G L+ D NL+L + ERI +Q IP G++++RGENV ++G V+
Sbjct: 13 VITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVN 72
Query: 61 KE 62
+E
Sbjct: 73 EE 74
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVV 54
L+ R ++G LR DQF NLV+ T+E GN+ DI G+ +IRG +VV
Sbjct: 22 LKANRMIVGTLRGFDQFMNLVVDNTVE--VNGNEKNDI--GMVVIRGNSVV 68
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60
M+ L GR + G LR D F N+VL T+E N +I G+ +IRG ++V++ +D
Sbjct: 18 MLKLNGGRAVTGILRGFDPFMNVVLDDTVEECK-DNTKNNI--GMVVIRGNSIVMVEALD 74
Query: 61 K 61
+
Sbjct: 75 R 75
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVV 54
L R + G LR DQF NLV+ T+E GN DI G+ +IRG ++V
Sbjct: 22 LNANRMVTGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSIV 68
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56
L RT+ G LR D F N+ L T+E + +Y G+ IIRG +++LM
Sbjct: 23 LNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKY---EIGMVIIRGNSILLM 72
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR----------GIFIIRGE 51
V +DGRT +G L + D F NLVL E H+ Q ++P G+ I+RGE
Sbjct: 16 VTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQ--NVPSNSVYEEKRMLGLVILRGE 73
Query: 52 NVV 54
+V
Sbjct: 74 FIV 76
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVL-----HKTIERIHVGNQYGDIPR--GIFIIRGENVV 54
++L+DGRT IG+ ++ D+ N++L H+ I+ G+ R G+ ++RGE++V
Sbjct: 19 IILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENV 53
+V L++G T G+L + D + NL L + I + G+++ +P IRG N+
Sbjct: 16 LVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPE--CYIRGNNI 66
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56
L GR + G LR D F NLV+ + +E G Q G+ +IRG +++++
Sbjct: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSIIML 70
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56
L GR + G LR D F NLV+ + +E G Q G+ +IRG +++++
Sbjct: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSIIML 70
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56
L GR + G LR D F NLV+ + +E G Q G+ +IRG +++++
Sbjct: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSIIML 70
>sp|Q4AA52|RS16_MYCHJ 30S ribosomal protein S16 OS=Mycoplasma hyopneumoniae (strain J /
ATCC 25934 / NCTC 10110) GN=rpsP PE=3 SV=1
Length = 88
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 RDGRTL--IGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRG 50
RDGR + +GY +FA + L KT +H+G Q R IF +G
Sbjct: 28 RDGRFIEALGYYNPQQKFAKVNLEKTYRWLHIGAQVTQTVRNIFSKKG 75
>sp|Q4A879|RS16_MYCH7 30S ribosomal protein S16 OS=Mycoplasma hyopneumoniae (strain
7448) GN=rpsP PE=3 SV=1
Length = 88
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 RDGRTL--IGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRG 50
RDGR + +GY +FA + L KT +H+G Q R IF +G
Sbjct: 28 RDGRFIEALGYYNPQQKFAKVNLEKTYRWLHIGAQVTQTVRNIFSKKG 75
>sp|Q601V7|RS16_MYCH2 30S ribosomal protein S16 OS=Mycoplasma hyopneumoniae (strain
232) GN=rpsP PE=3 SV=1
Length = 88
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 RDGRTL--IGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRG 50
RDGR + +GY +FA + L KT +H+G Q R IF +G
Sbjct: 28 RDGRFIEALGYYNPQQKFAKVNLEKTYRWLHIGAQVTQTVRNIFSKKG 75
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56
L R + G LR D F N+V+ + +E G G + G+ +IRG +VV+M
Sbjct: 21 LNGNRRVSGILRGFDPFMNMVIDEAVEYQKDG---GSVNLGMTVIRGNSVVIM 70
>sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1
SV=2
Length = 5005
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 57 GEVDKEKEHCPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKER-GLSFVP 108
G +++E + QL+ V+V DI R++ K RS M A LK++ GLS+ P
Sbjct: 3564 GTINQEIQRYQQLESVAVNDI----RRDVRKKLRRSSMRAASLKDKWGLSYKP 3612
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 GRTLIGYLRSVDQFANLVLHKTIERIHV---GNQYGDIPR-GIFIIRGENVVLMGEVDKE 62
GR + G L+ DQ NLVL E++ G G I + G+ ++RG +VL+ +D
Sbjct: 43 GRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102
Query: 63 KE 64
+E
Sbjct: 103 EE 104
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQ---YGDIPRGIFIIRGENVVLMGE 58
V L +G +G L+S+D + N+VL +T E + G+Q YGD+ IRG NV+ + E
Sbjct: 31 VRLHNGVEYLGNLQSIDGYMNIVLDETKEFVG-GDQARNYGDV-----FIRGNNVLYISE 84
Query: 59 V 59
Sbjct: 85 A 85
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKEK 63
L+ G G L +VD + NL L E I GN G++ G +IR NV+ +G VD E
Sbjct: 25 LKWGMEYKGVLVAVDSYMNLQLAHAEEYID-GNSQGNL--GEILIRCNNVLYVGGVDGEN 81
Query: 64 E 64
E
Sbjct: 82 E 82
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGN--QYGDIPR--GIFIIRGENVVLMG 57
LR RTL+G L++ D N+VL +E I+ N + + R + IRG+ V L+
Sbjct: 20 LRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLIS 77
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|A2AAE1|K1109_MOUSE Uncharacterized protein KIAA1109 OS=Mus musculus GN=Kiaa1109 PE=1
SV=4
Length = 5005
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 57 GEVDKEKEHCPQLQQVSVEDILNAQRKEQEVKQERSRMLAKRLKER-GLSFVP 108
G +++E + QL+ V+V DI R++ K RS M A LK++ GL + P
Sbjct: 3564 GTINQEIQRYQQLESVAVNDI----RRDVRKKLRRSSMRAASLKDKWGLGYKP 3612
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56
L GR + G LR D F NLV+ + +E G Q G+ IRG +++++
Sbjct: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNI---GMVEIRGNSIIML 70
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
++L+D RT IG ++ D+ NL+L E + ++ +P G ++RGEN+V
Sbjct: 19 IVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENIV 78
>sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SMB1 PE=1 SV=1
Length = 196
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIE 30
VL +DGR IG L + D+ NLVL++ IE
Sbjct: 22 VLTQDGRVYIGQLMAFDKHMNLVLNECIE 50
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVV 54
+L+DGR IG ++ D+ NL+L E + + P G+ ++RGEN+V
Sbjct: 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLV 78
Query: 55 LM 56
M
Sbjct: 79 SM 80
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum
GN=snrpf PE=3 SV=1
Length = 91
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 12 GYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKE 62
G L SVD + NL L T E I N+ P G +IR NV+ + +D E
Sbjct: 34 GILASVDSYMNLQLAATEEWIDGANKG---PLGEVLIRCNNVLFVRGIDDE 81
>sp|Q5L8X2|ISPF_BACFN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
GN=ispF PE=3 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 12 GYLRSVDQFANLVLHKTIERIHV-GNQYGDIPRGIFIIRGENVVLMGEVDKEKEHCPQLQ 70
G +++D + ++L KT+E I G Q G+I + + E K K H P +Q
Sbjct: 68 GEYKNID--SKILLKKTVELIATKGYQIGNI----------DATICAERPKLKAHIPSMQ 115
Query: 71 QVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLS-FVPDLIN 112
QV E ++ + +K + L +E G+S + LIN
Sbjct: 116 QVLAE-VMGIDADDISIKATTTEKLGFTGREEGISAYATVLIN 157
>sp|Q64P34|ISPF_BACFR 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
OS=Bacteroides fragilis (strain YCH46) GN=ispF PE=3 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 12 GYLRSVDQFANLVLHKTIERIHV-GNQYGDIPRGIFIIRGENVVLMGEVDKEKEHCPQLQ 70
G +++D + ++L KT+E I G Q G+I + + E K K H P +Q
Sbjct: 68 GEYKNID--SKILLKKTVELIAAKGYQIGNI----------DATICAERPKLKAHIPSMQ 115
Query: 71 QVSVEDILNAQRKEQEVKQERSRMLAKRLKERGLS-FVPDLIN 112
QV E ++ + +K + L +E G+S + LIN
Sbjct: 116 QVLAE-VMGIDADDISIKATTTEKLGFTGREEGISAYATVLIN 157
>sp|P71004|YWHL_BACSU Uncharacterized protein YwhL OS=Bacillus subtilis (strain 168)
GN=ywhL PE=4 SV=1
Length = 458
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 34 VGNQYGDIPRGIFIIRGENVVLMGEVDKEKEHCPQLQQVSVEDIL 78
V NQYG + +I E + + + CP Q++VED+L
Sbjct: 94 VRNQYGQGDGAVSVIHTEEIDQVVYYAAQSGRCPDFSQITVEDLL 138
>sp|P78591|FET3_CANAX Iron transport multicopper oxidase FET3 OS=Candida albicans GN=FET3
PE=3 SV=1
Length = 624
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 7 GRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGEN 52
G T + DQ H H G QYGD RG+FII ++
Sbjct: 107 GETYLYNFTVTDQVGTYWYHS-----HTGGQYGDGMRGVFIIEDDD 147
>sp|B3PP95|SECA_RHIE6 Protein translocase subunit SecA OS=Rhizobium etli (strain CIAT
652) GN=secA PE=3 SV=1
Length = 904
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 9 TLIGYLRSVDQFANLVLHKTIERIHVGNQYG----DIPRGIFIIRGENVVLMGEVDKEKE 64
T Y R D+ A + E GN Y ++P + I R + E D+
Sbjct: 365 TFQNYFRMYDKLAGMTGTAQTEAEEFGNIYNLDVIEVPTNLPIKR------IDEDDEVYR 418
Query: 65 HCPQLQQVSVEDILNAQRKEQEV-----KQERSRMLAKRLKERGLS 105
+ + +E+IL+A ++ Q V E+S +LA+RL+++G +
Sbjct: 419 TFDEKFKAIIEEILDAHKRGQPVLVGTTSIEKSELLAERLRKQGFN 464
>sp|Q9H892|TTC12_HUMAN Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=2
SV=2
Length = 705
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 27/115 (23%)
Query: 8 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKEKEHC- 66
+ L +L++VD+ +NL I N + + ++ E +L+ E D+E++ C
Sbjct: 7 KDLQKFLKNVDEISNL--------IQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECR 58
Query: 67 ----------PQLQQVSVEDI--------LNAQRKEQEVKQERSRMLAKRLKERG 103
PQ S E+I + KE+ ++ +++LA LKE+G
Sbjct: 59 TTLNKTMISPPQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKG 113
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIE 30
V L G+ +IG L+ DQ NLVL T+E
Sbjct: 40 VKLMGGKLVIGVLKGYDQLMNLVLDDTVE 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,473,662
Number of Sequences: 539616
Number of extensions: 1618889
Number of successful extensions: 6699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 6633
Number of HSP's gapped (non-prelim): 100
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)