Query psy10177
Match_columns 116
No_of_seqs 176 out of 1145
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 19:45:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.8 3.4E-21 1.2E-25 135.8 7.1 71 1-71 37-111 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.8 5E-20 1.7E-24 126.0 8.3 66 1-66 24-93 (96)
3 3s6n_G Small nuclear ribonucle 99.8 8.7E-19 3E-23 115.0 6.0 58 1-61 18-75 (76)
4 1h64_1 SnRNP SM-like protein; 99.8 2E-18 6.7E-23 112.5 6.9 58 1-61 18-75 (75)
5 1d3b_B Protein (small nuclear 99.7 2.9E-18 1E-22 115.3 7.8 62 1-62 18-86 (91)
6 1ljo_A Archaeal SM-like protei 99.7 4.2E-18 1.4E-22 111.6 7.1 58 1-61 19-77 (77)
7 4emk_B U6 snRNA-associated SM- 99.7 1.8E-18 6.3E-23 113.0 5.3 57 1-60 18-74 (75)
8 4emk_A U6 snRNA-associated SM- 99.7 4.4E-18 1.5E-22 116.6 7.4 58 1-60 34-91 (94)
9 1th7_A SnRNP-2, small nuclear 99.7 4.9E-18 1.7E-22 112.3 7.0 58 1-61 23-80 (81)
10 3s6n_E Small nuclear ribonucle 99.7 6E-18 2.1E-22 115.3 7.6 54 5-60 38-91 (92)
11 1i4k_A Putative snRNP SM-like 99.7 6E-18 2E-22 110.6 7.2 58 1-61 18-75 (77)
12 4emg_A Probable U6 snRNA-assoc 99.7 5.2E-18 1.8E-22 115.5 7.2 59 1-59 23-91 (93)
13 3s6n_F Small nuclear ribonucle 99.7 7.8E-18 2.7E-22 113.1 7.8 61 1-64 20-80 (86)
14 1i8f_A Putative snRNP SM-like 99.7 7.3E-18 2.5E-22 111.6 7.2 56 1-60 25-80 (81)
15 1b34_B Protein (small nuclear 99.7 9.2E-18 3.1E-22 118.5 6.8 61 1-61 43-114 (118)
16 2fwk_A U6 snRNA-associated SM- 99.7 5.4E-18 1.8E-22 120.2 5.4 63 1-63 42-116 (121)
17 1n9r_A SMF, small nuclear ribo 99.7 4.1E-17 1.4E-21 111.3 7.5 57 1-60 35-92 (93)
18 1mgq_A SM-like protein; LSM, R 99.7 3.6E-17 1.2E-21 108.8 6.7 55 1-58 29-83 (83)
19 4emh_A Probable U6 snRNA-assoc 99.7 1.1E-16 3.8E-21 111.5 6.8 62 1-64 30-91 (105)
20 3pgw_B SM B; protein-RNA compl 99.7 1.6E-16 5.4E-21 123.9 7.7 60 1-60 18-84 (231)
21 1b34_A Protein (small nuclear 99.6 3.2E-16 1.1E-20 110.9 6.9 58 1-61 16-73 (119)
22 1d3b_A Protein (small nuclear 99.6 7.3E-16 2.5E-20 100.9 7.1 57 1-60 19-75 (75)
23 1m5q_A SMAP3, small nuclear ri 99.6 1.7E-15 5.8E-20 109.1 5.4 55 1-62 14-68 (130)
24 2y9a_D Small nuclear ribonucle 99.5 3E-14 1E-18 102.0 7.4 58 1-61 19-76 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 97.4 0.00048 1.7E-08 46.2 6.3 53 2-63 22-75 (86)
26 3ahu_A Protein HFQ; SM-like mo 91.9 0.22 7.5E-06 32.6 4.2 26 2-27 28-53 (78)
27 2qtx_A Uncharacterized protein 91.6 0.25 8.5E-06 31.8 4.2 26 2-27 30-55 (71)
28 1u1s_A HFQ protein; SM-like ba 91.0 0.26 8.9E-06 32.6 3.9 24 2-25 24-47 (82)
29 1kq1_A HFQ, HOST factor for Q 89.5 0.48 1.6E-05 30.8 4.2 25 2-26 24-48 (77)
30 3sb2_A Protein HFQ; SM-like, R 89.4 0.83 2.8E-05 29.9 5.3 23 2-24 25-47 (79)
31 2ylb_A Protein HFQ; RNA-bindin 89.3 0.45 1.5E-05 30.7 3.9 24 2-25 26-49 (74)
32 2y90_A Protein HFQ; RNA-bindin 87.4 1.2 4.1E-05 30.6 5.3 26 2-27 26-51 (104)
33 3hfo_A SSR3341 protein; HFQ, S 63.1 11 0.00039 23.8 4.2 23 2-24 26-48 (70)
34 3hfn_A ASL2047 protein; HFQ, S 58.3 11 0.00037 24.1 3.4 22 2-23 28-49 (72)
35 2vxe_A CG10686-PA; EDC3, CAR-1 54.8 43 0.0015 22.1 6.6 59 2-60 18-83 (88)
36 2fb7_A SM-like protein, LSM-14 51.5 37 0.0013 22.7 5.3 60 2-61 24-90 (95)
37 3rux_A BIRA bifunctional prote 41.4 28 0.00096 26.5 4.0 24 5-28 232-255 (270)
38 1y96_B Gemin7, SIP3, GEM-assoc 35.1 94 0.0032 20.3 6.8 48 2-57 34-82 (85)
39 4a8c_A Periplasmic PH-dependen 34.3 91 0.0031 24.9 6.2 27 2-28 92-118 (436)
40 4a53_A EDC3; RNA binding prote 34.2 36 0.0012 23.9 3.2 48 2-63 17-66 (125)
41 1ycy_A Conserved hypothetical 30.8 1E+02 0.0035 19.4 4.6 47 4-58 23-69 (71)
42 4hcz_A PHD finger protein 1; p 26.9 54 0.0018 20.1 2.8 19 2-20 12-30 (58)
43 1x4r_A PARP14 protein; WWE dom 25.6 4.4 0.00015 27.4 -2.6 18 12-29 35-52 (99)
44 3by7_A Uncharacterized protein 24.4 1.6E+02 0.0055 19.6 7.2 60 1-62 7-78 (100)
45 1ky9_A Protease DO, DEGP, HTRA 23.0 1.2E+02 0.0039 24.5 4.9 25 2-26 115-139 (448)
46 3rkx_A Biotin-[acetyl-COA-carb 20.7 90 0.0031 24.2 3.7 23 5-27 286-308 (323)
47 3bfm_A Biotin protein ligase-l 20.3 1E+02 0.0036 22.5 3.8 23 2-27 197-219 (235)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.84 E-value=3.4e-21 Score=135.81 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=52.1
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCc----ccceeecceEEEeeccEEEEeecCCccccCCCCcc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGN----QYGDIPRGIFIIRGENVVLMGEVDKEKEHCPQLQQ 71 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~----~~~~~~~G~~lIRG~nVv~ig~id~~~e~~~~~~~ 71 (116)
.|.|+|||+|.|+|+|||+||||||++|+|++...+ ....+.+|.++|||+||++|+++|.+.+.+.||.+
T Consensus 37 ~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ee~~~p~~~ 111 (113)
T 4emk_C 37 QATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQ 111 (113)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-----------
T ss_pred EEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccccccCcccc
Confidence 488999999999999999999999999999876432 24578999999999999999999999988888754
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5e-20 Score=125.99 Aligned_cols=66 Identities=29% Similarity=0.474 Sum_probs=54.0
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCc----ccceeecceEEEeeccEEEEeecCCccccC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGN----QYGDIPRGIFIIRGENVVLMGEVDKEKEHC 66 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~----~~~~~~~G~~lIRG~nVv~ig~id~~~e~~ 66 (116)
.|.|+|||+|.|+|+|||+||||||++|+|++.... ....+++|.++|||+||++|++++.+.+..
T Consensus 24 ~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~~d~~ 93 (96)
T 3bw1_A 24 YIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSEDDDGA 93 (96)
T ss_dssp EEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-----C
T ss_pred EEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcccccc
Confidence 488999999999999999999999999999986532 234678999999999999999999876543
No 3
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.76 E-value=8.7e-19 Score=114.98 Aligned_cols=58 Identities=29% Similarity=0.607 Sum_probs=48.0
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
.|.|+|||+|.|+|+|||+||||+|++|.|++..+ ..+.+|.++|||+||++|+++|.
T Consensus 18 ~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 18 SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG---QQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp EEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-------CBSSEEECSSSEEEEEC---
T ss_pred EEEECCCcEEEEEEEEECCcceEEEeceEEEccCC---cEeEcCEEEECCCeEEEEEeccC
Confidence 37899999999999999999999999999986533 25789999999999999999874
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.75 E-value=2e-18 Score=112.54 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=50.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
.|.|+|||+|.|+|+|||+|||++|++|+|++.. ...+++|.++|||+||++|+++|+
T Consensus 18 ~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 18 LVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---EVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp EEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC---CceeECCEEEECCCEEEEEEeCCC
Confidence 3789999999999999999999999999998642 246789999999999999998863
No 5
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.75 E-value=2.9e-18 Score=115.35 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=52.7
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEc--C-----cccceeecceEEEeeccEEEEeecCCc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHV--G-----NQYGDIPRGIFIIRGENVVLMGEVDKE 62 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~--~-----~~~~~~~~G~~lIRG~nVv~ig~id~~ 62 (116)
.|.|+|||+|.|+|+|||+||||||++|+|.+.. . .....+.+|.++|||+||++|...+..
T Consensus 18 ~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~~ 86 (91)
T 1d3b_B 18 RCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86 (91)
T ss_dssp EEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEECC
T ss_pred EEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCCC
Confidence 3889999999999999999999999999996422 1 234578999999999999999987653
No 6
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.74 E-value=4.2e-18 Score=111.60 Aligned_cols=58 Identities=29% Similarity=0.454 Sum_probs=50.5
Q ss_pred CEEecCC-cEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDG-RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdG-R~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
.|.|++| |+|.|+|+|||+|||++|++|+|+.. +. ..+.+|.++|||+||++|+++|.
T Consensus 19 ~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 19 RVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG-EE--KVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp EEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec-CC--cEeECCeEEEeCCeEEEEEeCCC
Confidence 3789999 99999999999999999999999863 22 36789999999999999999873
No 7
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.74 E-value=1.8e-18 Score=113.04 Aligned_cols=57 Identities=32% Similarity=0.505 Sum_probs=50.0
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|+|||+|.|+|+|||+|||++|++|+|++. +. ..+.+|.++|||+||++|+++|
T Consensus 18 ~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 18 LIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-GK--KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp EEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-TE--EEEEEEEEEEEGGGSSEEEEC-
T ss_pred EEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-CC--cccEecEEEEcCCeEEEEEecC
Confidence 378999999999999999999999999999753 22 3568999999999999999986
No 8
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.74 E-value=4.4e-18 Score=116.57 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=51.2
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|++||+|.|+|+|||+||||||++|+|++..+. ..+.+|.++|||+||++|.+..
T Consensus 34 ~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 34 WVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG--VTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp EEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTC--CEEEEEEEEECSTTEEEEEECC
T ss_pred EEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCC--cEeEcCEEEEcCCEEEEEEeCC
Confidence 378999999999999999999999999999873222 3678999999999999999874
No 9
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.73 E-value=4.9e-18 Score=112.32 Aligned_cols=58 Identities=36% Similarity=0.555 Sum_probs=50.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
.|.|+|||+|.|+|+|||+|||++|++|.|++... ..+.+|.++|||+||++|++.|.
T Consensus 23 ~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 23 LVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG---SGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp EEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSS---CEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCC---ceeECCEEEECCCEEEEEEecCC
Confidence 37899999999999999999999999999986432 35789999999999999998873
No 10
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.73 E-value=6e-18 Score=115.35 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=48.1
Q ss_pred cCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 5 RDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 5 rdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
++||+|.|+|+|||+||||||++|+|++..+. ..+.+|.++|||+||++|+++|
T Consensus 38 ~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 38 QVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK--SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp SCSSEEEEEEEEECTTCCEEEEEEEEECSSSC--CEEEEEEEEECGGGEEEEEEC-
T ss_pred cCCEEEEEEEEEEcCcCcEEEeeeEEEecCCC--ceeEcCeEEEeCCEEEEEEeCC
Confidence 99999999999999999999999999864333 4678999999999999999875
No 11
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.73 E-value=6e-18 Score=110.58 Aligned_cols=58 Identities=31% Similarity=0.353 Sum_probs=51.3
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
.|.|+|||+|.|+|+|||+|||++|++|.|++.. ...+.+|.++|||+||++|++.|.
T Consensus 18 ~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 18 IVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG---EVVRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEECC-
T ss_pred EEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC---CcEeECCEEEECCCEEEEEEeCCC
Confidence 3789999999999999999999999999998642 235789999999999999999875
No 12
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.73 E-value=5.2e-18 Score=115.53 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=50.2
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcC---cc-------cceeecceEEEeeccEEEEeec
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVG---NQ-------YGDIPRGIFIIRGENVVLMGEV 59 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~---~~-------~~~~~~G~~lIRG~nVv~ig~i 59 (116)
.|.|+|||+|.|+|+|||+||||||++|+|++... .+ ...+.+|.++|||+||++|++.
T Consensus 23 ~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I~p~ 91 (93)
T 4emg_A 23 YVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 (93)
T ss_dssp EEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEEECC
T ss_pred EEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEEEec
Confidence 37899999999999999999999999999987631 11 2468999999999999999874
No 13
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.73 E-value=7.8e-18 Score=113.12 Aligned_cols=61 Identities=39% Similarity=0.489 Sum_probs=51.0
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCCccc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKEKE 64 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~~~e 64 (116)
.|.|+|||+|.|+|+|||+||||+|++|.|... +. ..+.+|.++|||+||++|+++|.+.+
T Consensus 20 ~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-g~--~~~~lg~v~IRG~nI~~i~~~d~~~~ 80 (86)
T 3s6n_F 20 MVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-GA--LSGHLGEVLIRCNNVLYIRGVEEEEE 80 (86)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEESSEEECGGGEEEEEECC----
T ss_pred EEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-Cc--eeeEccEEEEeCCeEEEEEeCCcccc
Confidence 378999999999999999999999999998752 32 35689999999999999999998664
No 14
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.73 E-value=7.3e-18 Score=111.63 Aligned_cols=56 Identities=39% Similarity=0.574 Sum_probs=50.5
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|+|||+|.|+|+|||+|||++|++|+|+ . + ...+.+|.++|||+||++|++.|
T Consensus 25 ~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-~--~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 25 LVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-D--GNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp EEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-T--TEEEEEEEEEECGGGEEEEEECC
T ss_pred EEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-C--CcccCCCEEEECCCEEEEEEeCC
Confidence 3789999999999999999999999999998 2 2 24679999999999999999876
No 15
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.72 E-value=9.2e-18 Score=118.46 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=49.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcc-----------cceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-----------YGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~-----------~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
.|.|+|||+|.|+|+|||+||||||++|+|++..... ...+.+|.++|||+||++|++.+.
T Consensus 43 ~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I~~~~~ 114 (118)
T 1b34_B 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114 (118)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECCC
T ss_pred EEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEEEeCch
Confidence 3789999999999999999999999999998643210 125679999999999999998875
No 16
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.71 E-value=5.4e-18 Score=120.21 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=51.8
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcC-------cccc-----eeecceEEEeeccEEEEeecCCcc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVG-------NQYG-----DIPRGIFIIRGENVVLMGEVDKEK 63 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~-------~~~~-----~~~~G~~lIRG~nVv~ig~id~~~ 63 (116)
.|.|+|||+|.|+|+|||+||||||++|+|++... .... .+.+|.++|||+||++|++.+...
T Consensus 42 ~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~~~~~~~ 116 (121)
T 2fwk_A 42 YVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGDPD 116 (121)
T ss_dssp EEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESSSCC-
T ss_pred EEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEEecCCCC
Confidence 37899999999999999999999999999987531 1112 578999999999999999887643
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.70 E-value=4.1e-17 Score=111.27 Aligned_cols=57 Identities=30% Similarity=0.325 Sum_probs=50.5
Q ss_pred CEEecCC-cEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDG-RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdG-R~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|+|| |+|.|+|+|||+||||+|++|+|++. +. ..+.+|.++|||+||++|++++
T Consensus 35 ~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-~~--~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 35 GVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-GV--SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp EEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-TE--EEEECCSEEECGGGEEEEEECC
T ss_pred EEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-CC--eEeEcCEEEEcCCeEEEEEeCC
Confidence 3789999 99999999999999999999999852 32 3568999999999999999875
No 18
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.69 E-value=3.6e-17 Score=108.83 Aligned_cols=55 Identities=31% Similarity=0.426 Sum_probs=49.0
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEee
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
.|.|+|||+|.|+|+|||+|||++|++|.|++.. ...+.+|.++|||+||++|.+
T Consensus 29 ~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 29 IIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG---EVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp EEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEC
T ss_pred EEEEcCCcEEEEEEEEECCCceeEEccEEEEecC---CcccCCCEEEECCCEEEEEEC
Confidence 3789999999999999999999999999998642 246789999999999999974
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.66 E-value=1.1e-16 Score=111.52 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=49.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCCccc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKEKE 64 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~~~e 64 (116)
.|.|++|++|.|+|+|||+||||+|++|+|....+. ..+.+|.++|||+||++|...|...+
T Consensus 30 ~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~--~~~~lg~v~IRG~nI~~I~~pd~l~d 91 (105)
T 4emh_A 30 LVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGD--KFFRLPECYIRGNNIKYLRIQDEVLS 91 (105)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC--EEEEEEEEEECGGGEEEEEC------
T ss_pred EEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCc--eeeEcCeEEEeCCeEEEEecCHHHhh
Confidence 378999999999999999999999999999743332 24689999999999999999987653
No 20
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.66 E-value=1.6e-16 Score=123.94 Aligned_cols=60 Identities=30% Similarity=0.467 Sum_probs=51.8
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcC-------cccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVG-------NQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~-------~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|+|+|||+|+|+|+|||+||||||+||+|+++.. .....+.+|+++|||+||++|..-+
T Consensus 18 ~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 18 RCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred EEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 48999999999999999999999999999987421 1246789999999999999998544
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.64 E-value=3.2e-16 Score=110.89 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=51.2
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
+|.|++|++|.|+|.|||+||||+|++|+|....+ ....+|.++|||+||++|...|.
T Consensus 16 ~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~---~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 16 TIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR---EPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp EEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTS---CCEEEEEEEECGGGEEEEECCTT
T ss_pred EEEEcCCCEEEEEEEEEcccceEEeccEEEecCCC---ceeEcceEEEcCCeEEEEEeccc
Confidence 47899999999999999999999999999975322 24689999999999999998875
No 22
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.63 E-value=7.3e-16 Score=100.92 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=49.8
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|++|++|.|+|.|||+|||++|++|+|....+ ....+|.++|||+||.+|...|
T Consensus 19 ~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~---~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 19 TCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG---RVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS---CEEEEEEEEECGGGEEEEEECC
T ss_pred EEEECCCcEEEEEEEEEccceeEEEEeEEEECCCC---cEEEcCeEEEeCCEEEEEEcCC
Confidence 37899999999999999999999999999975322 2578999999999999998654
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.57 E-value=1.7e-15 Score=109.05 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=49.7
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCCc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKE 62 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~~ 62 (116)
.|.|+||++|.|+|+|||+||||+|++|.|. .+ ..+|.++|||+||++|.+.|..
T Consensus 14 ~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~--~~-----~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 14 QVVLSNGEVYKGVLHAVDNQLNIVLANASNK--AG-----EKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEECT--TC-----CEEEEEEECGGGEEEEEECCCC
T ss_pred EEEECCCcEEEEEEEEEcccceeEEeeEEEE--cC-----CEeceEEEeCCeEEEEEcCCcc
Confidence 3789999999999999999999999999986 22 4789999999999999998875
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.51 E-value=3e-14 Score=102.01 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=50.5
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
+|.|++|++|.|+|.+||+|||++|++|+|....+. ...+|.++|||+||.+|...|.
T Consensus 19 ~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~---~~~l~~v~IRGnnI~~I~lpd~ 76 (126)
T 2y9a_D 19 TCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR---VAQLEQVYIRGSKIRFLILPDM 76 (126)
T ss_dssp EEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC---CEEEEEEEECGGGEEEEECCSS
T ss_pred EEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc---EeecccEEEeCCEEEEEEcccc
Confidence 478999999999999999999999999999743222 4689999999999999997665
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=97.38 E-value=0.00048 Score=46.20 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=43.7
Q ss_pred EEecCCcEEEEEEEEec-cccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCCcc
Q psy10177 2 VLLRDGRTLIGYLRSVD-QFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKEK 63 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fD-qf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~~~ 63 (116)
|+|.||++|.|+|.+|| ...|+||.++- .++. .-..+|.|..|.-|.-++...
T Consensus 22 V~l~dg~~y~G~l~tvDp~s~sIvL~n~~----~~~~-----~~~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 22 VTASEKNEYKGWVLTTDPVSANIVLVNFL----EDGS-----MSVTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp EEETTTEEEEEEEEEECTTTCCEEEEEEC----TTSC-----EEEEEECGGGEEEEEEEECCC
T ss_pred EEEcCCCEEEEEEEEECCCceEEEEeecc----cCCe-----EEEEEEecceEEEEEEecchh
Confidence 78999999999999999 99999999992 2332 348899999999888776543
No 26
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=91.88 E-value=0.22 Score=32.60 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.3
Q ss_pred EEecCCcEEEEEEEEeccccceEEcc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHK 27 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d 27 (116)
|.|.+|-.+.|...|||+|+=|+-.+
T Consensus 28 v~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 28 VFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEESS
T ss_pred EEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 67999999999999999998766533
No 27
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=91.61 E-value=0.25 Score=31.82 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.5
Q ss_pred EEecCCcEEEEEEEEeccccceEEcc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHK 27 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d 27 (116)
|.|.+|-.+.|..+|||+|+=++-.+
T Consensus 30 v~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 30 IFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEET
T ss_pred EEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 67999999999999999998776544
No 28
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=91.01 E-value=0.26 Score=32.58 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.5
Q ss_pred EEecCCcEEEEEEEEeccccceEE
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVL 25 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL 25 (116)
|.|.+|-.+.|..+|||+|+=|+-
T Consensus 24 v~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 24 IYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEE
T ss_pred EEEeCCcEEEEEEEEEcceEEEEe
Confidence 679999999999999999987654
No 29
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=89.54 E-value=0.48 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.8
Q ss_pred EEecCCcEEEEEEEEeccccceEEc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLH 26 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~ 26 (116)
|.|.+|-.+.|...+||+|+=++-.
T Consensus 24 I~L~nG~~l~G~I~~fD~f~VlL~~ 48 (77)
T 1kq1_A 24 VFFLNGFQMKGVIEEYDKYVVSLNS 48 (77)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEE
T ss_pred EEEeCCCEEEEEEEEECCcEEEEEE
Confidence 6799999999999999999766543
No 30
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=89.39 E-value=0.83 Score=29.87 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEecCCcEEEEEEEEeccccceE
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLV 24 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLV 24 (116)
|.|.+|-.+.|.+.+||+|+=++
T Consensus 25 I~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 25 IYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp EEETTSCEEEEEEEEECSSEEEE
T ss_pred EEEeCCCEEEEEEEEECCcEEEE
Confidence 67999999999999999997664
No 31
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=89.31 E-value=0.45 Score=30.69 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=20.9
Q ss_pred EEecCCcEEEEEEEEeccccceEE
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVL 25 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL 25 (116)
|.|.+|-.+.|.+.+||+|+=++-
T Consensus 26 i~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 26 IYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEE
T ss_pred EEEeCCCEEEEEEEEECCcEEEEE
Confidence 679999999999999999975543
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=87.45 E-value=1.2 Score=30.56 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEecCCcEEEEEEEEeccccceEEcc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHK 27 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d 27 (116)
|.|.+|-.+.|.+++||+|+=|+-..
T Consensus 26 I~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 26 IYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEESS
T ss_pred EEEeCCCEEEEEEEEECCcEEEEECC
Confidence 78999999999999999998665533
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=63.15 E-value=11 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEecCCcEEEEEEEEeccccceE
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLV 24 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLV 24 (116)
|.|.+|-.+.|.+..+|+|.=++
T Consensus 26 I~L~tG~~l~G~i~WQD~~cl~L 48 (70)
T 3hfo_A 26 IKLLTGDSLFGTIRWQDTDGLGL 48 (70)
T ss_dssp EEETTSCEEEEEEEEECSSEEEE
T ss_pred EEecCCCEEEEEEEEeCCCEEEE
Confidence 67999999999999999995443
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=58.31 E-value=11 Score=24.07 Aligned_cols=22 Identities=18% Similarity=0.165 Sum_probs=19.4
Q ss_pred EEecCCcEEEEEEEEeccccce
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANL 23 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NL 23 (116)
|.|.+|..+.|.+.-+|+|.=.
T Consensus 28 I~L~tGd~l~G~i~WQD~~cl~ 49 (72)
T 3hfn_A 28 IKLVTGDAITGRVLWQDPTCVC 49 (72)
T ss_dssp EEETTSCEEEEEEEEECSSEEE
T ss_pred EEecCCCEEEEEEEEECCCEEE
Confidence 6799999999999999998533
No 35
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=54.83 E-value=43 Score=22.09 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.1
Q ss_pred EEecCCcEEEEEEEEec-cccceEEcceEEEEEcCcc------cceeecceEEEeeccEEEEeecC
Q psy10177 2 VLLRDGRTLIGYLRSVD-QFANLVLHKTIERIHVGNQ------YGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fD-qf~NLVL~d~~Eri~~~~~------~~~~~~G~~lIRG~nVv~ig~id 60 (116)
++.+.+-.|.|+|...| +-..+.|+++.-.=..+.. -.+.....++.||+.|--+.-.+
T Consensus 18 LISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 18 LISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp EEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred EEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 34667788999999999 5677888888642222211 12234578899999998776544
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=51.50 E-value=37 Score=22.73 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=40.6
Q ss_pred EEecCCcEEEEEEEEec-cccceEEcceEEEEEcCcc------cceeecceEEEeeccEEEEeecCC
Q psy10177 2 VLLRDGRTLIGYLRSVD-QFANLVLHKTIERIHVGNQ------YGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fD-qf~NLVL~d~~Eri~~~~~------~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
++.+.+-.|.|+|..+| +-.-+.|+++.-.=..+.. -.+.....++.||+.|--+.-.+.
T Consensus 24 LISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~ 90 (95)
T 2fb7_A 24 LISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEP 90 (95)
T ss_dssp EEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCC
T ss_pred EEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecC
Confidence 35677788999999999 6677888887532111110 123345789999999988776543
No 37
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=41.41 E-value=28 Score=26.47 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=21.0
Q ss_pred cCCcEEEEEEEEeccccceEEcce
Q psy10177 5 RDGRTLIGYLRSVDQFANLVLHKT 28 (116)
Q Consensus 5 rdGR~l~G~L~~fDqf~NLVL~d~ 28 (116)
.+|..+.|+..|+|....|+|+..
T Consensus 232 ~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 232 PGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEET
T ss_pred CCCeEEEEEEEEECCCCeEEEEEC
Confidence 368899999999999999998754
No 38
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=35.14 E-value=94 Score=20.31 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=33.6
Q ss_pred EEecCCcEEEEEEEEec-cccceEEcceEEEEEcCcccceeecceEEEeeccEEEEe
Q psy10177 2 VLLRDGRTLIGYLRSVD-QFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMG 57 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fD-qf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig 57 (116)
+.|.++.++.|.+.++| ...|+..++-. .+- ..+...++|+..|++++
T Consensus 34 f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~----TPi----Gv~~eAlLR~~Dii~~s 82 (85)
T 1y96_B 34 FTLHEGVRVAAHFGATDLDVANFYVSQLQ----TPI----GVQAEALLRCSDIISYT 82 (85)
T ss_dssp EEEGGGCEEEEEEEEECTTCCEEEEEEEC----CTT----CCEEEEEEEGGGEEEEE
T ss_pred EEEeCCeEEEEEEEecCcccceeEhhhcC----CCc----ccchhhhhhcCCEEEEE
Confidence 46788899999999999 56677544432 111 12336899999999886
No 39
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=34.26 E-value=91 Score=24.91 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.6
Q ss_pred EEecCCcEEEEEEEEeccccceEEcce
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHKT 28 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d~ 28 (116)
|.+.||+.+.+.+.++|...+|-|=..
T Consensus 92 V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 92 IQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred EEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 678899999999999999988855433
No 40
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=34.22 E-value=36 Score=23.89 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=33.2
Q ss_pred EEecCCcEEEEEEEEeccccceEE--cceEEEEEcCcccceeecceEEEeeccEEEEeecCCcc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVL--HKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDKEK 63 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL--~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~~~ 63 (116)
|.|+||..+.|++..+| --+|+| .+|..- ..-|+...|.-+.-+....
T Consensus 17 v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~~s-------------~~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 17 VLLNNDSKARGVITNFD-SSNSILQLRLANDS-------------TKSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp EEETTSCEEEEEEEEEE-TTTTEEEEEETTTE-------------EEEEEGGGEEEEEECCSCC
T ss_pred EEECCCCEeeEEEEeec-CCeeEEeccccccc-------------cceeecccccceeeeeccc
Confidence 78999999999999998 346666 777311 1166666666666555433
No 41
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=30.85 E-value=1e+02 Score=19.38 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=28.0
Q ss_pred ecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEee
Q psy10177 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 4 LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
..+...|+|+|.-||.-. +.|.|++.. .+|+ --.++++=+.|..|-.
T Consensus 23 vg~ehSFtGiledFDeEv-iLL~dV~D~--~GNk-----~k~liv~idDinWimL 69 (71)
T 1ycy_A 23 VGGDHSFTGTLEDFDEEV-ILLKDVVDV--IGNR-----GKQMLIGLEDINWIML 69 (71)
T ss_dssp EC----CEEEEEEECSSE-EEEEEEEET--TEEE-----EEEEEEEGGGEEEEEE
T ss_pred ecCcceeeeehhhcCcce-eehhhHHHH--hccc-----cceeEEEeccceEEEe
Confidence 344578999999999864 668888764 3432 1145666676666543
No 42
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=26.92 E-value=54 Score=20.07 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.5
Q ss_pred EEecCCcEEEEEEEEeccc
Q psy10177 2 VLLRDGRTLIGYLRSVDQF 20 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf 20 (116)
+.-.||+.|.|+...+|..
T Consensus 12 arwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 12 ARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp EECTTSCEEEEEEEEEETT
T ss_pred EEecCCCEEeEEEEEEecC
Confidence 5578999999999998876
No 43
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.55 E-value=4.4 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=16.4
Q ss_pred EEEEEeccccceEEcceE
Q psy10177 12 GYLRSVDQFANLVLHKTI 29 (116)
Q Consensus 12 G~L~~fDqf~NLVL~d~~ 29 (116)
|++.+||.-.|+.|++|.
T Consensus 35 ~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SCEEECCTTHHHHHHHHH
T ss_pred CeEeechHHHHHHHHHHH
Confidence 568999999999999986
No 44
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=24.39 E-value=1.6e+02 Score=19.60 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=42.1
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCc----c----c----ceeecceEEEeeccEEEEeecCCc
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGN----Q----Y----GDIPRGIFIIRGENVVLMGEVDKE 62 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~----~----~----~~~~~G~~lIRG~nVv~ig~id~~ 62 (116)
+|+|++|-.++|.+.--|.. +.++|.+..+.... . + .-..-..++||.+.|+.+.+...+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~e 78 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDD 78 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCHH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCHH
Confidence 37899999999999954443 88888888653211 0 1 011234799999999999988654
No 45
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=22.97 E-value=1.2e+02 Score=24.53 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred EEecCCcEEEEEEEEeccccceEEc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLH 26 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~ 26 (116)
|.+.||+.+.+.+.++|....|.|=
T Consensus 115 V~~~dg~~~~a~vv~~d~~~DlAvl 139 (448)
T 1ky9_A 115 VQLSDGRKFDAKMVGKDPRSDIALI 139 (448)
T ss_dssp EEETTSCEEEEEEEEEETTTTEEEE
T ss_pred EEECCCCEEEEEEEEEcCCCCEEEE
Confidence 6788999999999999999888543
No 46
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=20.69 E-value=90 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.4
Q ss_pred cCCcEEEEEEEEeccccceEEcc
Q psy10177 5 RDGRTLIGYLRSVDQFANLVLHK 27 (116)
Q Consensus 5 rdGR~l~G~L~~fDqf~NLVL~d 27 (116)
.++..+.|+..|+|....|+++.
T Consensus 286 ~~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 286 ENDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CC-CEEEEEEEEECTTSCEEEEE
T ss_pred ECCeEEEEEEEEECCCCEEEEEE
Confidence 45678999999999999999864
No 47
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=20.29 E-value=1e+02 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.0
Q ss_pred EEecCCcEEEEEEEEeccccceEEcc
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHK 27 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d 27 (116)
|.+ +| +.|+..|+|....|+++.
T Consensus 197 V~v-~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 197 RTE-AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp EEE-TT--EEEEEEEECTTCCEEEEC
T ss_pred EEE-Ee--EEEEEEEECCCCeEEEEe
Confidence 344 45 899999999999999964
Done!