Query psy10177
Match_columns 116
No_of_seqs 176 out of 1145
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 19:46:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3bb_ b.38.1.1 (B:) B core S 99.8 1E-18 7.6E-23 114.5 7.7 57 2-58 13-76 (81)
2 d1b34b_ b.38.1.1 (B:) D2 core 99.7 1.5E-18 1.1E-22 116.8 7.2 60 1-60 18-88 (93)
3 d1i8fa_ b.38.1.1 (A:) Archaeal 99.7 2.8E-18 2E-22 110.2 7.0 55 1-59 16-70 (71)
4 d1i4k1_ b.38.1.1 (1:) Archaeal 99.7 5.7E-18 4.2E-22 108.6 6.5 55 1-58 17-71 (72)
5 d2fwka1 b.38.1.1 (A:24-115) U6 99.7 3E-18 2.2E-22 114.4 5.4 59 1-59 19-89 (92)
6 d1n9ra_ b.38.1.1 (A:) Small nu 99.7 1.5E-17 1.1E-21 106.0 7.0 57 1-60 10-67 (68)
7 d1h641_ b.38.1.1 (1:) Archaeal 99.7 1.7E-17 1.2E-21 105.9 6.9 55 1-58 16-70 (71)
8 d1th7a1 b.38.1.1 (A:3-78) Arch 99.7 2.4E-17 1.7E-21 106.7 7.3 56 1-59 21-76 (76)
9 d1mgqa_ b.38.1.1 (A:) Archaeal 99.7 5E-17 3.6E-21 104.6 6.7 55 1-58 20-74 (74)
10 d1ljoa_ b.38.1.1 (A:) Archaeal 99.7 9.4E-17 6.9E-21 104.0 7.0 54 2-58 20-74 (75)
11 d1d3ba_ b.38.1.1 (A:) D3 core 99.5 1.4E-14 1.1E-18 92.6 7.5 57 1-60 16-72 (72)
12 d1b34a_ b.38.1.1 (A:) D1 core 99.4 9.8E-13 7.2E-17 85.6 7.1 57 2-61 16-72 (80)
13 d1m5q1_ b.38.1.1 (1:) Sm-Like 99.3 1.1E-12 7.8E-17 92.6 6.8 54 1-61 14-67 (127)
14 d1kq1a_ b.38.1.2 (A:) Pleiotro 88.5 0.32 2.3E-05 28.9 4.2 29 2-30 19-47 (60)
15 d1u1sa1 b.38.1.2 (A:6-71) Plei 87.9 0.46 3.3E-05 28.7 4.7 23 2-24 19-41 (66)
16 d1biaa2 b.34.1.1 (A:271-317) B 83.8 0.64 4.6E-05 25.7 3.6 26 3-28 8-33 (47)
17 d1rqpa1 b.141.1.1 (A:193-298) 62.4 2.7 0.0002 26.4 2.8 22 5-26 5-27 (106)
18 d2vxfa1 b.38.1.5 (A:6-85) LSM1 61.1 15 0.0011 22.4 6.9 60 2-61 9-75 (80)
19 d1ycya1 b.38.1.4 (A:5-70) Hypo 26.3 54 0.0039 18.9 4.2 45 4-56 19-63 (66)
20 d1ib8a1 b.38.2.1 (A:91-164) Hy 23.5 27 0.002 19.8 2.5 15 7-21 28-42 (74)
21 d1ryia2 d.16.1.3 (A:219-306) G 21.8 47 0.0034 18.7 3.5 23 44-66 26-49 (88)
No 1
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75 E-value=1e-18 Score=114.46 Aligned_cols=57 Identities=32% Similarity=0.501 Sum_probs=49.5
Q ss_pred EEecCCcEEEEEEEEeccccceEEcceEEEEEcCc-------ccceeecceEEEeeccEEEEee
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGN-------QYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~-------~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
|.|+|||.|.|+|+|||+||||||++|+|++.... ....+.+|+++|||+||++|+.
T Consensus 13 V~l~dgR~~~G~L~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~r~lG~v~IRG~~Iv~i~~ 76 (81)
T d1d3bb_ 13 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 76 (81)
T ss_dssp EEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEE
T ss_pred EEEcCCCEEEEEEEEECCccCEEEcCEEEEEeecCccccccccceEEEeeeEEEeCCEEEEEEc
Confidence 78999999999999999999999999999865322 1245789999999999999963
No 2
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74 E-value=1.5e-18 Score=116.81 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=47.8
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcc-----------cceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-----------YGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~-----------~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|+|||.|.|+|+|||+||||||+||.|++..... ...+.+|.++|||+||++|....
T Consensus 18 ~V~lr~~r~~~G~L~afD~~~NlVL~d~~E~~~~~~~~~~~~~~~~~~~~~R~lg~~liRGdnVv~I~~~p 88 (93)
T d1b34b_ 18 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 88 (93)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECC
T ss_pred EEEECCCCEEEEEEEEeccceeEEeeceEEEEEecCCccccccccccceeEEEeceEEEeCCEEEEEEcCh
Confidence 3789999999999999999999999999998764221 23568999999999999998653
No 3
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=99.73 E-value=2.8e-18 Score=110.22 Aligned_cols=55 Identities=44% Similarity=0.692 Sum_probs=49.1
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeec
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 59 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~i 59 (116)
.|.|+||+.|.|+|+|||+|||++|++|.|+.. + ..+++|.++|||+||++|+++
T Consensus 16 ~V~Lk~g~~~~G~L~~~D~~mNivL~~~~e~~~-~---~~~~~g~v~iRG~~I~~I~~~ 70 (71)
T d1i8fa_ 16 LVKLRDSHEIRGILRSFDQHVNLLLEDAEEIID-G---NVYKRGTMVVRGENVLFISPV 70 (71)
T ss_dssp EEEEGGGEEEEEEEEEECTTCCEEEEEEEEEET-T---EEEEEEEEEECGGGEEEEEEC
T ss_pred EEEECCCCEEEEEEEEECCCcceEEccEEEEEC-C---CEEEcceEEEeCCeEEEEeCC
Confidence 378999999999999999999999999998743 2 356899999999999999975
No 4
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=99.71 E-value=5.7e-18 Score=108.58 Aligned_cols=55 Identities=33% Similarity=0.393 Sum_probs=48.5
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEee
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
.|.|+||+.|.|+|+|||+|||++|++|.|+...+ ..+.+|.++|||+||++|++
T Consensus 17 ~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~---~~~~~g~~~IRG~~I~~Isp 71 (72)
T d1i4k1_ 17 IVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE---VVRKVGSVVIRGDTVVFVSP 71 (72)
T ss_dssp EEEEGGGCEEEEEEEEECTTCCEEEEEEEEESSSS---EEEEEEEEEECGGGEEEEEC
T ss_pred EEEECCCCEEEEEEEEEcCCCCeEEeeEEEEecCC---eEeEcceEEEeCCeEEEEEc
Confidence 37899999999999999999999999999975433 24689999999999999974
No 5
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=99.71 E-value=3e-18 Score=114.35 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=49.9
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCc------------ccceeecceEEEeeccEEEEeec
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGN------------QYGDIPRGIFIIRGENVVLMGEV 59 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~------------~~~~~~~G~~lIRG~nVv~ig~i 59 (116)
.|.|+|||.|.|+|+|||+||||+|+||.|++...+ ....+.+|.++|||+||++|++.
T Consensus 19 ~V~l~~gr~~~G~L~~~D~~~NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~~r~lg~~~iRG~~Vv~I~p~ 89 (92)
T d2fwka1 19 YVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPG 89 (92)
T ss_dssp EEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESS
T ss_pred EEEEcCCCEEEEEEEEEcCCCCEEEeeEEEEEecCCccccccccccccccceeEcceEEEeCCEEEEEEeC
Confidence 388999999999999999999999999999875422 13456899999999999999973
No 6
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.70 E-value=1.5e-17 Score=105.96 Aligned_cols=57 Identities=30% Similarity=0.364 Sum_probs=48.6
Q ss_pred CEEec-CCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLR-DGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~Lr-dGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|+ +|+.|.|+|++||+|||++|++|.|.+. +. ....+|.++|||+||.+|++++
T Consensus 10 ~V~Lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~~-~~--~~~~lg~~~IRG~nI~~I~~~p 67 (68)
T d1n9ra_ 10 GVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-GV--SHGTLGEIFIRCNNVLYIRELP 67 (68)
T ss_dssp EEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-TE--EEEECCSEEECGGGEEEEEECC
T ss_pred EEEEEcCCEEEEEEEEEECCcCceEEeeEEEEec-CC--cccCcCeEEEECCEEEEEEeCC
Confidence 37899 5588999999999999999999999753 22 3468999999999999999765
No 7
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=99.69 E-value=1.7e-17 Score=105.86 Aligned_cols=55 Identities=29% Similarity=0.391 Sum_probs=48.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEee
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
.|.|+||+.|.|+|.|||+||||+|.+|.|... ++ ..+.+|.++|||+||++|++
T Consensus 16 ~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~-~~--~~~~l~~~~IRG~~I~~Isp 70 (71)
T d1h641_ 16 LVILKKGFEFRGRLIGYDIHLNVVLADAEMIQD-GE--VVKRYGKIVIRGDNVLAISP 70 (71)
T ss_dssp EEEETTSEEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEE
T ss_pred EEEEcCCCEEEEEEEEECCCCCeEEeeEEEEec-CC--cEeEcCcEEEECCeEEEEeC
Confidence 378999999999999999999999999998753 22 35789999999999999986
No 8
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.69 E-value=2.4e-17 Score=106.71 Aligned_cols=56 Identities=38% Similarity=0.571 Sum_probs=49.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeec
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 59 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~i 59 (116)
.|.|+||+.|.|+|.|||+|||++|++|.|....+. .+.+|.++|||+||++|+++
T Consensus 21 ~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~---~~~~~~v~iRG~~I~~I~~~ 76 (76)
T d1th7a1 21 LVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGS---GKKLGTIVIRGDNVILISPL 76 (76)
T ss_dssp EEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSC---EEEEEEEEECGGGEEEEEEC
T ss_pred EEEECCCCEEEEEEEEECCCCCEEEeEEEEEecCCc---ccCcceEEEECCEEEEEEeC
Confidence 378999999999999999999999999998754333 46899999999999999975
No 9
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.67 E-value=5e-17 Score=104.59 Aligned_cols=55 Identities=33% Similarity=0.507 Sum_probs=48.2
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEee
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
.|.|+||+.|.|+|.|||+|||++|++|.|... +. ..+.+|.++|||+||.+|+|
T Consensus 20 ~V~lk~g~~~~G~L~~~D~~mNl~L~~~~e~~~-~~--~~~~~~~~~IRG~~I~~I~p 74 (74)
T d1mgqa_ 20 IIKLKGDREFRGVLKSFDLHMNLVLNDAEELED-GE--VTRRLGTVLIRGDNIVYISP 74 (74)
T ss_dssp EEEETTTEEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEC
T ss_pred EEEECCCCEEEEEEEEECCCCCeEEeeEEEEeC-CC--eEeEcceEEEeCCEEEEEeC
Confidence 378999999999999999999999999999743 22 35688999999999999975
No 10
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=99.66 E-value=9.4e-17 Score=103.98 Aligned_cols=54 Identities=31% Similarity=0.466 Sum_probs=47.0
Q ss_pred EEecCC-cEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEee
Q psy10177 2 VLLRDG-RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 58 (116)
Q Consensus 2 V~LrdG-R~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~ 58 (116)
|.|++| |.|.|+|.|||+|||++|++|.|+...+ ..+.+|.++|||+||.+|.+
T Consensus 20 V~lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~~~~---~~~~~g~~~IRG~~I~~I~p 74 (75)
T d1ljoa_ 20 VEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE---KVRSLGEIVLRGNNVVLIQP 74 (75)
T ss_dssp EEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTE---EEEEEEEEEECGGGEEEEEE
T ss_pred EEEECCCEEEEEEEEEEcCCCcEEEeEEEEEcCCC---cEeEcceEEEeCCEEEEEEC
Confidence 678865 8999999999999999999999975332 35789999999999999986
No 11
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=1.4e-14 Score=92.58 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=48.6
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVD 60 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id 60 (116)
.|.|+||++|.|+|.+||+|||++|++|.+....+ +...+|.++|||+||.+|...|
T Consensus 16 ~VeLkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~---~~~~~~~v~IRG~~I~~i~lpd 72 (72)
T d1d3ba_ 16 TCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG---RVAQLEQVYIRGCKIRFLILPD 72 (72)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS---CEEEEEEEEECGGGEEEEEECC
T ss_pred EEEECCCeEEEEEEEEEcCCeeEEEEEEEEEcCCC---cEeEcCeEEEECCEEEEEEcCC
Confidence 37899999999999999999999999998864322 2457899999999999997654
No 12
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.35 E-value=9.8e-13 Score=85.61 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=48.7
Q ss_pred EEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
|.|++|..|.|+|.++|.|||++|++|.+... +. .....+.++|||+||.++...|.
T Consensus 16 VeLkng~~~~G~L~~~D~~MNl~L~~~~~~~~-~~--~~~~~~~v~IRG~~Ir~i~lPd~ 72 (80)
T d1b34a_ 16 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLK-NR--EPVQLETLSIRGNNIRYFILPDS 72 (80)
T ss_dssp EEETTCCEEEEEEEEECTTCCEEEEEEEEECT-TS--CCEEEEEEEECGGGEEEEECCTT
T ss_pred EEECCCCEEEEEEEEEcCCcEEEEEEEEEEcC-CC--CEEEcccEEEcCCEEEEEECCCC
Confidence 78999999999999999999999999987532 22 23578999999999999987654
No 13
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=99.33 E-value=1.1e-12 Score=92.56 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=46.5
Q ss_pred CEEecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEEeecCC
Q psy10177 1 MVLLRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 1 lV~LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
+|.|+||++|.|+|.+||+|||++|++|.+. .++ ..+.++|||+||.+|...+.
T Consensus 14 ~VeLkng~~~~G~L~~~D~~mNivL~da~~~--~~~-----k~~~v~IRG~~I~~I~~~e~ 67 (127)
T d1m5q1_ 14 QVVLSNGEVYKGVLHAVDNQLNIVLANASNK--AGE-----KFNRVFIMYRYIVHIDSTER 67 (127)
T ss_dssp EEEETTSCEEEEEEEEECTTCCEEEEEEEET--TCC-----EEEEEEECGGGEEEEEECSC
T ss_pred EEEECCCCEEEEEEEEECCCceEEEeEEEEC--CCC-----cccEEEEeCCeEEEEEcchh
Confidence 4789999999999999999999999999863 333 35678999999999987765
No 14
>d1kq1a_ b.38.1.2 (A:) Pleiotropic translational regulator Hfq {Staphylococcus aureus [TaxId: 1280]}
Probab=88.52 E-value=0.32 Score=28.88 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=24.2
Q ss_pred EEecCCcEEEEEEEEeccccceEEcceEE
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLVLHKTIE 30 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLVL~d~~E 30 (116)
|-|.+|-.+.|...|||+|.=|+-.+...
T Consensus 19 ifL~nGvkl~G~I~~fD~ftvlL~~~~~q 47 (60)
T d1kq1a_ 19 VFFLNGFQMKGVIEEYDKYVVSLNSQGKQ 47 (60)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEETTEE
T ss_pred EEEECCcEEEEEEEEEcceEEEEEeCCcE
Confidence 67899999999999999998877655443
No 15
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq {Pseudomonas aeruginosa [TaxId: 287]}
Probab=87.93 E-value=0.46 Score=28.69 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEecCCcEEEEEEEEeccccceE
Q psy10177 2 VLLRDGRTLIGYLRSVDQFANLV 24 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fDqf~NLV 24 (116)
|-|.+|-.+.|..+|||+|.=|+
T Consensus 19 ifL~nGvkl~G~I~~fD~ftvLL 41 (66)
T d1u1sa1 19 IYLVNGIKLQGQIESFDQFVILL 41 (66)
T ss_dssp EEETTSCEEEEEEEEECSSEEEE
T ss_pred EEEEcCcEEEEEEEEEcceEEEE
Confidence 67899999999999999997654
No 16
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=83.83 E-value=0.64 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.1
Q ss_pred EecCCcEEEEEEEEeccccceEEcce
Q psy10177 3 LLRDGRTLIGYLRSVDQFANLVLHKT 28 (116)
Q Consensus 3 ~LrdGR~l~G~L~~fDqf~NLVL~d~ 28 (116)
++.+++++.|+..|+|...+|+|+..
T Consensus 8 v~~g~~~i~G~a~gId~~G~Lll~t~ 33 (47)
T d1biaa2 8 LIIGDKEIFGISRGIDKQGALLLEQD 33 (47)
T ss_dssp EEETTEEEEEEEEEECTTSCEEEEET
T ss_pred EEECCeEEEEEEeeECCCCcEEEEEC
Confidence 35677999999999999999999743
No 17
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=62.38 E-value=2.7 Score=26.44 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=19.7
Q ss_pred cCCcEEEEEEEEec-cccceEEc
Q psy10177 5 RDGRTLIGYLRSVD-QFANLVLH 26 (116)
Q Consensus 5 rdGR~l~G~L~~fD-qf~NLVL~ 26 (116)
.+|..+.|...-+| +|.|++..
T Consensus 5 ~~~~~i~G~V~~iDh~FGN~iTN 27 (106)
T d1rqpa1 5 QDGEALVGVVSAIDHPFGNVWTN 27 (106)
T ss_dssp EETTEEEEEEEEEETTTTEEEEE
T ss_pred ccCCEEEEEEEEEecCCCcEEEe
Confidence 47889999999999 79999875
No 18
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=61.12 E-value=15 Score=22.41 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=40.8
Q ss_pred EEecCCcEEEEEEEEec-cccceEEcceEEEEEcCcc------cceeecceEEEeeccEEEEeecCC
Q psy10177 2 VLLRDGRTLIGYLRSVD-QFANLVLHKTIERIHVGNQ------YGDIPRGIFIIRGENVVLMGEVDK 61 (116)
Q Consensus 2 V~LrdGR~l~G~L~~fD-qf~NLVL~d~~Eri~~~~~------~~~~~~G~~lIRG~nVv~ig~id~ 61 (116)
++.+.+-.|.|+|..+| +-.-+.|+++.-.=..+.. -.+...+.++.||+.|--+.-.+.
T Consensus 9 LISk~dIRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~~IvFrgsDIKdL~v~e~ 75 (80)
T d2vxfa1 9 LISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEP 75 (80)
T ss_dssp EEETTSCEEEEEEEEEETTTTEEEEEEEEECCSTTSCCSSCCCCCCCCEEEEEEETTTEEEEEESSC
T ss_pred EEEcCCcEEEEEEEeeccccCEEEeeeeeEeecCCCCCCCccCCCCcceeEEEEcCcCcceEEeccC
Confidence 34567788999999999 4556888888643222211 123356789999999988776553
No 19
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=26.31 E-value=54 Score=18.88 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=26.8
Q ss_pred ecCCcEEEEEEEEeccccceEEcceEEEEEcCcccceeecceEEEeeccEEEE
Q psy10177 4 LRDGRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 56 (116)
Q Consensus 4 LrdGR~l~G~L~~fDqf~NLVL~d~~Eri~~~~~~~~~~~G~~lIRG~nVv~i 56 (116)
...-..|+|+|.-||.-. +.|.|++.. .+|+ --.++++=+.|..|
T Consensus 19 vgsehSFtGiledFDeEv-iLL~dV~D~--~GNk-----~k~llv~idD~nWi 63 (66)
T d1ycya1 19 VGGDHSFTGTLEDFDEEV-ILLKDVVDV--IGNR-----GKQMLIGLEDINWI 63 (66)
T ss_dssp EC----CEEEEEEECSSE-EEEEEEEET--TEEE-----EEEEEEEGGGEEEE
T ss_pred ecCcceeEEEhhhcCcce-EeehhhHHH--hccc-----cceeEEEeccceeE
Confidence 344578999999999864 668888764 3332 11456665666555
No 20
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=23.52 E-value=27 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=12.6
Q ss_pred CcEEEEEEEEecccc
Q psy10177 7 GRTLIGYLRSVDQFA 21 (116)
Q Consensus 7 GR~l~G~L~~fDqf~ 21 (116)
-|.+.|+|.++|.-.
T Consensus 28 ~k~f~G~L~~~~~~~ 42 (74)
T d1ib8a1 28 QKVFEGTLLAFEEDE 42 (74)
T ss_dssp CSEEEEEEEEEETTE
T ss_pred ceEEEEEEEeecCCe
Confidence 389999999999753
No 21
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}
Probab=21.83 E-value=47 Score=18.71 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=15.7
Q ss_pred ceEEE-eeccEEEEeecCCccccC
Q psy10177 44 GIFII-RGENVVLMGEVDKEKEHC 66 (116)
Q Consensus 44 G~~lI-RG~nVv~ig~id~~~e~~ 66 (116)
+.+++ |+++.+.||...+....+
T Consensus 26 ~~yiip~~~g~~~iG~T~e~~~~d 49 (88)
T d1ryia2 26 HCYIVPRKSGRLVVGATMKPGDWS 49 (88)
T ss_dssp TEEEEECTTSEEEEECCCEETCCC
T ss_pred CEEEEECCCCCEEEccEEEECCCC
Confidence 44555 788899999876655433
Done!