BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10178
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GSN|A Chain A, Crystal Structure Of The Public Ra14 Tcr In Complex With
The Hcmv Dominant NlvHLA-A2 Epitope
Length = 199
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 136 TDNTKEGEATVKLENGGEEPSATDKAEKETTEK------PEVKFVPKIIDPAGNAKRRRL 189
T NTKEG + + ++ E SAT + T + + +P I +P + R
Sbjct: 64 TLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRD 123
Query: 190 SEYEDESYC--RDEASLYPVSDSQDNIARRCIALSNILRNLTFVPGNELEFSKNSTF 244
S+ D+S C D S VS S+D+ A +R++ F + + +S S F
Sbjct: 124 SKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDF 180
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 20 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 71
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 72 YRELVLMKCVNHKNIIGLL 90
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 24 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 75
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 76 YRELVLMKCVNHKNIIGLL 94
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 13 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 64
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 65 YRELVLMKCVNHKNIIGLL 83
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 21 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 72
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 73 YRELVLMKCVNHKNIIGLL 91
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 478 TLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537
T L R+ + KP+ Q ++ IL++ VA I ++ +RP +QN HA R
Sbjct: 19 TFTVLKRYQNLKPIG-SGAQGIVCAAYDAILERNVA--IKKL---SRP--FQNQTHAKRA 70
Query: 538 KRKIVTKKSVANQHGIGAL 556
R++V K V +++ IG L
Sbjct: 71 YRELVLMKCVNHKNIIGLL 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,214,628
Number of Sequences: 62578
Number of extensions: 711190
Number of successful extensions: 1298
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 13
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)