Query psy10178
Match_columns 655
No_of_seqs 89 out of 107
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:46:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12031 DUF3518: Domain of un 100.0 2E-105 5E-110 797.5 17.3 254 212-472 1-257 (257)
2 PF12031 DUF3518: Domain of un 100.0 8E-41 1.7E-45 334.8 1.5 214 361-596 2-257 (257)
3 KOG1924|consensus 98.9 3.4E-09 7.5E-14 120.3 8.7 53 72-127 616-673 (1102)
4 KOG1924|consensus 98.7 6.3E-08 1.4E-12 110.3 9.4 21 387-408 863-883 (1102)
5 KOG1923|consensus 97.0 0.0013 2.9E-08 76.0 7.6 20 97-116 355-374 (830)
6 KOG1923|consensus 96.9 0.0013 2.9E-08 76.0 5.6 36 87-122 373-412 (830)
7 PLN03200 cellulose synthase-in 95.4 0.18 3.9E-06 64.9 14.2 182 355-614 380-565 (2102)
8 KOG1922|consensus 94.1 0.22 4.7E-06 58.5 9.6 29 78-110 392-421 (833)
9 COG5178 PRP8 U5 snRNP spliceos 93.6 0.052 1.1E-06 65.8 3.3 19 465-483 570-588 (2365)
10 PLN03200 cellulose synthase-in 93.0 1.5 3.2E-05 57.0 14.8 216 354-610 74-314 (2102)
11 PRK15319 AIDA autotransporter- 92.8 0.16 3.5E-06 64.3 6.0 23 88-110 1743-1772(2039)
12 PRK15319 AIDA autotransporter- 92.5 0.16 3.5E-06 64.3 5.5 7 286-292 1968-1974(2039)
13 PF05804 KAP: Kinesin-associat 89.0 2.2 4.8E-05 50.4 10.1 321 218-629 139-501 (708)
14 cd00020 ARM Armadillo/beta-cat 89.0 0.59 1.3E-05 39.5 4.2 80 353-441 22-102 (120)
15 PF04826 Arm_2: Armadillo-like 88.5 1.2 2.6E-05 46.3 6.8 190 205-489 19-210 (254)
16 PHA03247 large tegument protei 87.0 1.9 4.1E-05 56.8 8.4 22 245-266 3004-3027(3151)
17 cd00020 ARM Armadillo/beta-cat 86.7 6 0.00013 33.3 9.0 75 387-488 8-82 (120)
18 KOG1830|consensus 86.2 2.4 5.3E-05 47.6 7.8 8 181-188 490-497 (518)
19 PRK15313 autotransport protein 85.6 1.4 3.1E-05 53.2 6.2 18 87-104 650-667 (955)
20 PRK09752 adhesin; Provisional 85.3 0.81 1.7E-05 56.4 4.0 8 102-109 987-994 (1250)
21 PF05804 KAP: Kinesin-associat 82.9 1 2.2E-05 53.1 3.4 143 297-493 264-408 (708)
22 KOG1925|consensus 80.0 2.8 6E-05 48.1 5.3 31 97-127 304-334 (817)
23 PF07462 MSP1_C: Merozoite sur 79.4 4.4 9.5E-05 46.7 6.6 6 111-116 334-339 (574)
24 COG5178 PRP8 U5 snRNP spliceos 77.9 1.6 3.4E-05 54.0 2.7 10 310-319 384-393 (2365)
25 COG5064 SRP1 Karyopherin (impo 76.1 16 0.00036 40.8 9.6 108 390-524 161-268 (526)
26 PF05518 Totivirus_coat: Totiv 75.6 8.2 0.00018 46.1 7.6 20 39-58 707-726 (759)
27 KOG0168|consensus 75.1 9.9 0.00021 46.2 8.1 165 358-528 185-401 (1051)
28 KOG1922|consensus 73.5 14 0.00031 43.8 9.0 27 522-548 770-796 (833)
29 PF04826 Arm_2: Armadillo-like 73.3 22 0.00048 37.1 9.4 113 386-525 12-124 (254)
30 KOG0166|consensus 70.5 13 0.00029 42.7 7.6 128 296-445 166-294 (514)
31 PHA03211 serine/threonine kina 69.6 5.1 0.00011 44.4 4.1 9 606-614 439-447 (461)
32 KOG0166|consensus 68.4 33 0.00071 39.7 10.1 105 391-524 157-262 (514)
33 KOG1830|consensus 66.9 13 0.00028 42.2 6.3 11 208-218 473-483 (518)
34 PF04625 DEC-1_N: DEC-1 protei 66.6 15 0.00033 40.4 6.6 7 411-417 350-356 (407)
35 KOG0559|consensus 64.7 22 0.00048 39.8 7.5 15 190-204 307-321 (457)
36 PRK15313 autotransport protein 63.8 11 0.00024 46.0 5.5 10 285-294 883-892 (955)
37 KOG4849|consensus 63.4 15 0.00033 40.8 6.0 6 27-32 251-256 (498)
38 KOG1048|consensus 62.4 17 0.00037 43.3 6.6 123 381-528 513-644 (717)
39 KOG1077|consensus 62.3 15 0.00032 44.1 6.0 75 355-446 346-420 (938)
40 PF10508 Proteasom_PSMB: Prote 60.9 56 0.0012 37.0 10.1 82 384-492 75-156 (503)
41 PF03276 Gag_spuma: Spumavirus 60.4 24 0.00051 41.1 7.0 22 78-102 277-298 (582)
42 KOG4224|consensus 59.2 18 0.00039 40.8 5.7 132 365-505 319-475 (550)
43 smart00498 FH2 Formin Homology 57.0 5.6 0.00012 43.8 1.5 46 74-123 2-49 (432)
44 KOG0162|consensus 52.8 44 0.00096 40.5 7.7 26 53-78 1038-1063(1106)
45 KOG2391|consensus 52.3 35 0.00075 37.8 6.4 8 112-119 233-240 (365)
46 KOG1925|consensus 51.6 16 0.00034 42.4 3.8 21 293-313 462-487 (817)
47 PHA03211 serine/threonine kina 50.8 22 0.00048 39.5 4.9 8 57-64 56-63 (461)
48 PTZ00429 beta-adaptin; Provisi 50.5 19 0.00042 43.0 4.6 67 355-441 350-416 (746)
49 COG5373 Predicted membrane pro 47.1 38 0.00082 41.3 6.1 9 327-335 334-343 (931)
50 PF10165 Ric8: Guanine nucleot 46.3 1.2E+02 0.0025 34.1 9.5 93 430-537 242-346 (446)
51 KOG3036|consensus 46.3 51 0.0011 35.5 6.4 83 399-494 36-118 (293)
52 PRK12270 kgd alpha-ketoglutara 45.1 64 0.0014 40.5 7.7 9 244-252 340-348 (1228)
53 KOG4224|consensus 44.3 35 0.00076 38.6 5.0 171 225-435 316-513 (550)
54 KOG2259|consensus 43.8 6.7E+02 0.015 30.8 15.2 204 354-645 389-599 (823)
55 KOG2677|consensus 41.9 82 0.0018 37.8 7.6 39 110-149 195-238 (922)
56 PF01690 PLRV_ORF5: Potato lea 40.9 23 0.0005 40.4 3.1 23 97-119 57-79 (465)
57 PF01602 Adaptin_N: Adaptin N 40.4 4.4E+02 0.0095 28.8 12.6 55 355-423 96-150 (526)
58 KOG3397|consensus 40.2 25 0.00055 36.0 3.0 9 55-63 188-196 (225)
59 KOG2973|consensus 39.8 75 0.0016 35.2 6.6 138 473-647 60-206 (353)
60 PF13513 HEAT_EZ: HEAT-like re 39.7 38 0.00082 26.2 3.3 52 355-414 4-55 (55)
61 PF01690 PLRV_ORF5: Potato lea 37.2 31 0.00066 39.5 3.3 12 222-233 149-160 (465)
62 KOG0307|consensus 33.4 1.6E+02 0.0036 36.9 8.7 40 210-254 997-1044(1049)
63 PF12717 Cnd1: non-SMC mitotic 32.8 96 0.0021 30.0 5.6 69 355-441 5-74 (178)
64 PF00514 Arm: Armadillo/beta-c 31.1 81 0.0017 23.3 3.7 30 385-415 11-40 (41)
65 KOG3895|consensus 31.1 2.2E+02 0.0047 32.4 8.4 13 14-26 401-413 (488)
66 KOG4199|consensus 30.8 2.7E+02 0.0058 31.7 9.0 86 387-495 242-327 (461)
67 KOG0119|consensus 30.2 1.8E+02 0.0038 34.1 7.7 22 69-90 531-552 (554)
68 PF02181 FH2: Formin Homology 30.1 11 0.00023 40.2 -1.5 51 72-126 1-56 (370)
69 PRK14954 DNA polymerase III su 29.5 1.9E+02 0.0042 34.1 8.2 9 111-119 461-469 (620)
70 PLN02983 biotin carboxyl carri 29.3 1.8E+02 0.004 31.5 7.3 8 99-106 205-212 (274)
71 PF04078 Rcd1: Cell differenti 29.2 1.3E+02 0.0029 32.2 6.2 82 400-494 8-89 (262)
72 PF02985 HEAT: HEAT repeat; I 28.9 1.1E+02 0.0023 21.8 3.9 30 387-417 1-30 (31)
73 KOG3546|consensus 27.9 1.2E+02 0.0025 36.7 6.0 32 219-250 998-1029(1167)
74 PRK13855 type IV secretion sys 26.8 1.2E+02 0.0026 34.1 5.7 16 142-157 188-203 (376)
75 KOG4849|consensus 26.2 2.4E+02 0.0052 31.9 7.7 6 229-234 432-437 (498)
76 COG5373 Predicted membrane pro 26.0 1.3E+02 0.0029 37.0 6.1 9 14-22 62-70 (931)
77 PF12755 Vac14_Fab1_bd: Vacuol 25.3 32 0.00069 31.0 0.8 84 299-407 3-88 (97)
78 PF12331 DUF3636: Protein of u 25.1 1.9E+02 0.0041 28.8 6.0 40 401-441 108-147 (149)
79 PF08610 Pex16: Peroxisomal me 23.4 43 0.00093 36.1 1.5 43 223-267 20-65 (335)
80 KOG0946|consensus 23.4 2.9E+02 0.0063 34.3 8.1 122 355-503 80-214 (970)
81 KOG3036|consensus 22.4 1.3E+02 0.0028 32.6 4.7 54 562-618 65-118 (293)
82 PF08609 Fes1: Nucleotide exch 22.2 51 0.0011 29.7 1.5 83 326-443 4-87 (92)
83 smart00185 ARM Armadillo/beta- 22.2 1.3E+02 0.0029 21.2 3.4 28 387-415 13-40 (41)
84 KOG2312|consensus 22.0 39 0.00085 40.5 0.9 166 213-440 5-171 (847)
85 KOG0608|consensus 21.1 4.1E+02 0.009 32.7 8.7 20 398-417 586-605 (1034)
86 PRK07764 DNA polymerase III su 20.9 2.5E+02 0.0054 34.4 7.2 66 2-67 398-470 (824)
87 PRK12323 DNA polymerase III su 20.7 4.4E+02 0.0095 32.1 8.9 16 237-252 596-611 (700)
88 PF10568 Tom37: Outer mitochon 20.5 1.1E+02 0.0023 26.4 3.0 30 351-380 12-42 (72)
89 COG4982 3-oxoacyl-[acyl-carrie 20.1 1.5E+02 0.0031 36.0 4.8 18 430-447 464-481 (866)
No 1
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=100.00 E-value=2.2e-105 Score=797.47 Aligned_cols=254 Identities=64% Similarity=1.067 Sum_probs=248.5
Q ss_pred HHhhhhHHHHhhhhhccccccCchhhhhcCcchHHHHHHHHHhhhccccccccCCCCCCC-CCccccccCCCCccchhhh
Q psy10178 212 DNIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKD-DDDWTDCCSSLSPQAESEW 290 (655)
Q Consensus 212 d~la~RcicvSNIlR~LSFvPgNe~emakh~~lL~iLgrlLlLhheH~~r~~~~~~y~~e-d~d~~~~~~~~~~~~~~~W 290 (655)
|+|+||||||||||||||||||||.+||||+|||+||||+|+|||+||.|++++++|++| |+|++.+|+ +++|
T Consensus 1 d~la~RclclSNIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~------~~~w 74 (257)
T PF12031_consen 1 DSLARRCLCLSNILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCS------EAEW 74 (257)
T ss_pred ChHHHHHHHHHHHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccc------hHHH
Confidence 689999999999999999999999999999999999999999999999999999999998 567788876 6699
Q ss_pred HHHHHHHhhhhhHHhhhhccccccccCCCCCCchhhhhhhhhcccccccCCCCCCCCCCCC--CChHHHHHHHhhccccc
Q psy10178 291 WWDYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCN--LSPQRLALEALCKLCVT 368 (655)
Q Consensus 291 wwd~l~~LReNaLVtLaNiagqLDLs~ypesI~~PILdGLLHWaVCpsA~aqDPfps~~~~--lSPqrlALEaL~KLsI~ 368 (655)
|||||++|||||||+|+||||||||+.|||+|++|||||||||+|||+|+||||||+.|++ |||||||||+||||||+
T Consensus 75 wwd~l~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~ 154 (257)
T PF12031_consen 75 WWDCLEQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI 154 (257)
T ss_pred HHHHHHHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee
Confidence 9999999999999999999999999999999999999999999999999999999999976 99999999999999999
Q ss_pred cCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHh
Q psy10178 369 DNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALG 448 (655)
Q Consensus 369 d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~ 448 (655)
++|||+|||||||+|+|+||++|+|||++++++++||||||+|+|||++|+.+||+||.|++||+.||+|||++++||++
T Consensus 155 e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 155 ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAHQ 234 (257)
T ss_pred ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCcCCCCCCCCCCcHHHH
Q psy10178 449 VANQHGIGALRDNPDSMGTSLDML 472 (655)
Q Consensus 449 van~hgi~aL~~~Pe~~gtSv~Ml 472 (655)
++||||+++ ++|||+||||+|||
T Consensus 235 ~~~q~g~~~-~~np~~mgTSvdMl 257 (257)
T PF12031_consen 235 VASQHGMQA-RDNPELMGTSVDML 257 (257)
T ss_pred HHhhhhhhc-ccCcccCCCCCCcC
Confidence 999999999 89999999999996
No 2
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=100.00 E-value=8e-41 Score=334.82 Aligned_cols=214 Identities=28% Similarity=0.380 Sum_probs=197.7
Q ss_pred HhhccccccCCcceeecCCC-----hhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHH
Q psy10178 361 ALCKLCVTDNNVDLVIATPP-----YARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLL 435 (655)
Q Consensus 361 aL~KLsI~d~NVdliLsTpP-----fsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~L 435 (655)
.|+|+|||.+||-+.|||.| |+|++.|..+|+|+|.++|+|+.|.-+...+....+.|...++ ....||
T Consensus 2 ~la~RclclSNIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~------~~~~ww 75 (257)
T PF12031_consen 2 SLARRCLCLSNILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSC------SEAEWW 75 (257)
T ss_pred hHHHHHHHHHHHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhcccccc------chHHHH
Confidence 58999999999999999999 9999999999999999999999999999999877776666543 357999
Q ss_pred HHHHHHHHHHHH-hhhhhcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCC-----------CchhhHHHHHHHHHH
Q psy10178 436 VAFIEQAEQNAL-GVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDN-----------KPLFLQQEQRLLALV 503 (655)
Q Consensus 436 l~FLE~~~~na~-~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peN-----------r~~fl~~E~RLL~L~ 503 (655)
|+|+++.++||+ .++|.+|+++|++||| .+.+...++|+||+.||.. ++.+.||+..|+.||
T Consensus 76 wd~l~~lREnalV~laNisgqLdLs~~~e------~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLc 149 (257)
T PF12031_consen 76 WDCLEQLRENALVTLANISGQLDLSDYPE------SIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALC 149 (257)
T ss_pred HHHHHHHhhcceEeeeeeeeeeecccCch------HHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999 9999999999999998 4556678888888888765 567899999999999
Q ss_pred hhhhhhhHHHHHHHHhhHhhccccc--------cchhhhhHH----------------HHhh-HhccCcccccccccccc
Q psy10178 504 MSQILDQQVAAIISRVLYQTRPDLY--------QNSEHASRE----------------KRKI-VTKKSVANQHGIGALRD 558 (655)
Q Consensus 504 mS~ilDs~V~~ilA~vLfels~~l~--------~~~~~~~~e----------------~r~i-~~k~sv~~~~~~~~l~d 558 (655)
+.+|+|.||+.++|+..|.+-+++| .++++++|| +|+| +||++|| +||+|+||
T Consensus 150 KLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~--~Li~FiE~ 227 (257)
T PF12031_consen 150 KLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS--HLIAFIED 227 (257)
T ss_pred HhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH--HHHHHHHH
Confidence 9999999999999999999999988 589999999 7999 9999999 99999998
Q ss_pred CCCCccchHHHHHHHHhhhhhcccccCCCCCCCcHHHH
Q psy10178 559 NPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDML 596 (655)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~hg~~al~~~p~~~gtSv~Mm 596 (655)
+.++||+|+|||||+| ||||++||||||||
T Consensus 228 -------a~~~~~~~~~q~g~~~-~~np~~mgTSvdMl 257 (257)
T PF12031_consen 228 -------AEQNAHQVASQHGMQA-RDNPELMGTSVDML 257 (257)
T ss_pred -------HHHHHHHHHhhhhhhc-ccCcccCCCCCCcC
Confidence 9999999999999998 99999999999997
No 3
>KOG1924|consensus
Probab=98.89 E-value=3.4e-09 Score=120.25 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=31.2
Q ss_pred ccCCCCCCCCccccc-CCCcccccccccCCcccccccccccccccc-cc---Cchhhhhcc
Q psy10178 72 YYDETAPSKPNTIVN-SDVHVVKSEDKANGMTTTKPEETSVKIENN-KE---GESTVKKEN 127 (655)
Q Consensus 72 k~d~~~ps~P~k~fn-s~~~Vv~~e~k~~g~~~~e~~~tK~~l~~~-~~---~~s~~~k~~ 127 (655)
-+....|-+|++-|| ++.-. .+.-.---|...-+.|++=.+. .| .|++.-|.+
T Consensus 616 pKK~~k~e~~Mrr~nW~kI~p---~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~ 673 (1102)
T KOG1924|consen 616 PKKVYKPEVPMRRFNWSKIVP---RDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVK 673 (1102)
T ss_pred ccccCCCCCccccCCccccCc---cccCccceeeecchhhccchHHHHHHHHHhhcccccc
Confidence 345667788888887 66321 2233356687777777765554 22 266664433
No 4
>KOG1924|consensus
Probab=98.66 E-value=6.3e-08 Score=110.30 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=9.7
Q ss_pred HHHHHHHhhcccchhHHHHHHH
Q psy10178 387 LTYVLTRFLCKNEDQVLREFGV 408 (655)
Q Consensus 387 L~~~LvrLL~~~~~~v~RE~Av 408 (655)
|.++|+++ |.++.+..-.|+-
T Consensus 863 LLHfLae~-~e~kypd~l~F~d 883 (1102)
T KOG1924|consen 863 LLHFLAEI-CEEKYPDILKFPD 883 (1102)
T ss_pred HHHHHHHH-HHHhChhhhcchh
Confidence 44445554 3444444444444
No 5
>KOG1923|consensus
Probab=97.04 E-value=0.0013 Score=76.01 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=12.2
Q ss_pred ccCCcccccccccccccccc
Q psy10178 97 KANGMTTTKPEETSVKIENN 116 (655)
Q Consensus 97 k~~g~~~~e~~~tK~~l~~~ 116 (655)
++..++++....||+++|.+
T Consensus 355 ~~~a~~ik~~~~tk~~~p~l 374 (830)
T KOG1923|consen 355 ELFAATIKKPTPTKTKSPSL 374 (830)
T ss_pred HhHHHhhcCCCcccccCCCc
Confidence 55566666666666666554
No 6
>KOG1923|consensus
Probab=96.86 E-value=0.0013 Score=76.04 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=26.2
Q ss_pred CCCcccccccccCCcccccccccc----ccccccccCchh
Q psy10178 87 SDVHVVKSEDKANGMTTTKPEETS----VKIENNKEGEST 122 (655)
Q Consensus 87 s~~~Vv~~e~k~~g~~~~e~~~tK----~~l~~~~~~~s~ 122 (655)
+-+|+.-+-..+.||+..+.+|.| +++..+...|..
T Consensus 373 ~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 373 SLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred CccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 557887777889999999999986 455555444444
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.44 E-value=0.18 Score=64.89 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=117.3
Q ss_pred HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHH
Q psy10178 355 QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISL 434 (655)
Q Consensus 355 qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~ 434 (655)
|..++|+|+.+.-++.|-.++. ...-.+.|+.||..... ..++-++..|.|++.++....+.|+.. +.|..
T Consensus 380 qe~V~eALasl~gN~~l~~~L~-------~~daik~LV~LL~~~~~-evQ~~Av~aL~~L~~~~~e~~~aIi~~-ggIp~ 450 (2102)
T PLN03200 380 QERIIEALASLYGNAYLSRKLN-------HAEAKKVLVGLITMATA-DVQEELIRALSSLCCGKGGLWEALGGR-EGVQL 450 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHH-------hccchhhhhhhhccCCH-HHHHHHHHHHHHHhCCCHHHHHHHHHc-CcHHH
Confidence 5566777766555554444443 34455689999876655 779999999999999988877766655 45999
Q ss_pred HHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCC-CCCchhhHH--HHHHHHHHhhhhhhhH
Q psy10178 435 LVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHP-DNKPLFLQQ--EQRLLALVMSQILDQQ 511 (655)
Q Consensus 435 Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~p-eNr~~fl~~--E~RLL~L~mS~ilDs~ 511 (655)
|++||.... ..+-+.|+.+|..|++.. +|+...... =-.|.+|-.+. |.+
T Consensus 451 LV~LL~s~s-------------------------~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~ 503 (2102)
T PLN03200 451 LISLLGLSS-------------------------EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQK 503 (2102)
T ss_pred HHHHHcCCC-------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHH
Confidence 999998721 134456777888888643 344332211 12233333333 567
Q ss_pred HHHHHHHhhHhhccccccchhhhhHHHHhhHhc-cCccccccccccccCCCCccchHHHHHHHHhhhhhcccccCCCCCC
Q psy10178 512 VAAIISRVLYQTRPDLYQNSEHASREKRKIVTK-KSVANQHGIGALRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMG 590 (655)
Q Consensus 512 V~~ilA~vLfels~~l~~~~~~~~~e~r~i~~k-~sv~~~~~~~~l~d~~~~~~~~~~~~~~~~~~hg~~al~~~p~~~g 590 (655)
+..--+.+|+.++.. ..+.|++|.+ |-|- -|+.+|++ |+.
T Consensus 504 iqeeAawAL~NLa~~--------~~qir~iV~~aGAIp--pLV~LL~s-----gd~------------------------ 544 (2102)
T PLN03200 504 AKEDSATVLWNLCCH--------SEDIRACVESAGAVP--ALLWLLKN-----GGP------------------------ 544 (2102)
T ss_pred HHHHHHHHHHHHhCC--------cHHHHHHHHHCCCHH--HHHHHHhC-----CCH------------------------
Confidence 777777788877652 3456777643 6666 57777764 111
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCch
Q psy10178 591 TSLDMLRRTARTLLHLSRHPDNKP 614 (655)
Q Consensus 591 tSv~MmrRAA~~L~~lak~~enr~ 614 (655)
+...-|+.+|..|++..+++.
T Consensus 545 ---~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 545 ---KGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred ---HHHHHHHHHHHHHHhccchhH
Confidence 333678888888888777653
No 8
>KOG1922|consensus
Probab=94.09 E-value=0.22 Score=58.50 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=21.5
Q ss_pred CCCCccccc-CCCcccccccccCCcccccccccc
Q psy10178 78 PSKPNTIVN-SDVHVVKSEDKANGMTTTKPEETS 110 (655)
Q Consensus 78 ps~P~k~fn-s~~~Vv~~e~k~~g~~~~e~~~tK 110 (655)
|.+.+|.+. .+.- ......|+|++.+...
T Consensus 392 p~~~lk~l~wdk~~----~~~~~~~~w~~~~~~~ 421 (833)
T KOG1922|consen 392 PKNKLKPLHWDKTR----GSSKRSMVWSEVDSSS 421 (833)
T ss_pred CCCCCCCccccccC----CCCccCCCCCccccCC
Confidence 667777775 4444 4677899999999886
No 9
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.60 E-value=0.052 Score=65.76 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=10.9
Q ss_pred CCCcHHHHHHHHHHHHHhc
Q psy10178 465 MGTSLDMLRRTARTLLHLS 483 (655)
Q Consensus 465 ~gtSv~MlRRAA~~L~~LA 483 (655)
.|+|--.||.-...+-++.
T Consensus 570 ~GnsfHLmRE~Lk~~KliV 588 (2365)
T COG5178 570 VGNSFHLMREMLKFIKLIV 588 (2365)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4666666666555555544
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.02 E-value=1.5 Score=57.02 Aligned_cols=216 Identities=15% Similarity=0.103 Sum_probs=139.9
Q ss_pred hHHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCh-hhHH-HHhhcccc
Q psy10178 354 PQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADS-AMSR-TIALQSPC 431 (655)
Q Consensus 354 PqrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~-~~~r-~iA~qk~~ 431 (655)
=|..|+-+|..||..+.|-..|+. .+-+.-|+++| .......|+.|..+|.+|+..+. +-.+ .|+...++
T Consensus 74 vk~nAaaaL~nLS~~e~nk~~Iv~-------~GaIppLV~LL-~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~Ga 145 (2102)
T PLN03200 74 AKVNAAAVLGVLCKEEDLRVKVLL-------GGCIPPLLSLL-KSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGV 145 (2102)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-------cCChHHHHHHH-HCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCC
Confidence 466888999999999999999984 33444677776 45578899999999999998752 3233 46677899
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCCchhhHHH---HHHHHHHhhhhh
Q psy10178 432 ISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQE---QRLLALVMSQIL 508 (655)
Q Consensus 432 I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr~~fl~~E---~RLL~L~mS~il 508 (655)
|..||..++... . .| .-+-+-|+.+|..|+.+.+|+..++-.. ..|..+..+ -
T Consensus 146 Vp~Lv~lL~~gs--------------k---~d-----~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS--~ 201 (2102)
T PLN03200 146 VPSLWDQLQPGN--------------K---QD-----KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS--G 201 (2102)
T ss_pred hHHHHHHHhCCc--------------h---hh-----HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC--C
Confidence 999999998731 0 11 0122345679999999999986553211 144444443 2
Q ss_pred hhHHHHHHHHhhHhhccccccchhhhhHHHHhhHhccCccccccccccccCCC-C-----------c-cchHHHHHHHHh
Q psy10178 509 DQQVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGALRDNPD-S-----------M-GTSLDMLRRVAN 575 (655)
Q Consensus 509 Ds~V~~ilA~vLfels~~l~~~~~~~~~e~r~i~~k~sv~~~~~~~~l~d~~~-~-----------~-~~~~~~~~~~~~ 575 (655)
|..+..--+.+|+.+-. +..+ -+.+|++-|-|- .++.+|++.++ . + +++-...+.+.+
T Consensus 202 d~~lQ~eAa~aLa~Las---s~ee----~~~aVIeaGaVP--~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~ 272 (2102)
T PLN03200 202 NSDAQANAASLLARLMM---AFES----SISKVLDAGAVK--QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272 (2102)
T ss_pred CHHHHHHHHHHHHHHHc---CChH----HHHHHHHCCCHH--HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444555554421 1111 134567778877 79999964222 1 1 123446788888
Q ss_pred hhhhcccccC---CC--CC-C-CcHHHHHHHHHHHHHHhcCC
Q psy10178 576 QHGIGALRDN---PD--SM-G-TSLDMLRRTARTLLHLSRHP 610 (655)
Q Consensus 576 ~hg~~al~~~---p~--~~-g-tSv~MmrRAA~~L~~lak~~ 610 (655)
..|+..|.+. |. +| | .+....+-|..+|-.||+.-
T Consensus 273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 8888777643 22 22 2 34566888999999999764
No 11
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=92.85 E-value=0.16 Score=64.27 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=12.0
Q ss_pred CCcccccccccC-------Ccccccccccc
Q psy10178 88 DVHVVKSEDKAN-------GMTTTKPEETS 110 (655)
Q Consensus 88 ~~~Vv~~e~k~~-------g~~~~e~~~tK 110 (655)
.+|+..+.++.+ +..|.+.+-.+
T Consensus 1743 ~lfl~TLHDR~Geqy~~ad~s~W~Ri~GGh 1772 (2039)
T PRK15319 1743 NLQMQTLYDREGSQYRNADGSVWARFKAGK 1772 (2039)
T ss_pred hhhcccHHHcCCcccccCCCCeEEEEeccc
Confidence 355555556554 34566555443
No 12
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=92.54 E-value=0.16 Score=64.26 Aligned_cols=7 Identities=43% Similarity=0.985 Sum_probs=3.2
Q ss_pred chhhhHH
Q psy10178 286 AESEWWW 292 (655)
Q Consensus 286 ~~~~Www 292 (655)
.+.-||.
T Consensus 1968 lEANWiH 1974 (2039)
T PRK15319 1968 AEANWLH 1974 (2039)
T ss_pred EEEEEEE
Confidence 3444554
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.05 E-value=2.2 Score=50.43 Aligned_cols=321 Identities=18% Similarity=0.263 Sum_probs=186.1
Q ss_pred HHHHhhhhhccccccCchhhhhcCcchHHHHHHHHHhhhccccccccCCCCCCCCCccccccCCCCccchhhhHHHHHHH
Q psy10178 218 CIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSLSPQAESEWWWDYMEN 297 (655)
Q Consensus 218 cicvSNIlR~LSFvPgNe~emakh~~lL~iLgrlLlLhheH~~r~~~~~~y~~ed~d~~~~~~~~~~~~~~~Wwwd~l~~ 297 (655)
+|--|.-|=-|+=-|+|=.++.+|..+|..|.|.|+-. |-.+ -+
T Consensus 139 k~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred----------------------------------~~ks--~~ 182 (708)
T PF05804_consen 139 KIRGTSLILQLARNPENLEELVQNETLMSALARVLRED----------------------------------WKKS--VE 182 (708)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHH----------------------------------hhhh--HH
Confidence 45555666678888999999999999999999999322 1111 14
Q ss_pred hhhhhHHhhhhcccccccc----CCCC-CCchhhhhhhh----hcc--cccc--cCCCCC-----CCCCCCC---CCh--
Q psy10178 298 IRENVLVSLANISGHIDLD----QYPE-DISRPILDGLL----HWA--VCPA--AQGQDP-----FPSSSCN---LSP-- 354 (655)
Q Consensus 298 LReNaLVtLaNiagqLDLs----~ype-sI~~PILdGLL----HWa--VCps--A~aqDP-----fps~~~~---lSP-- 354 (655)
|-.|-+-++-++|.+-++- .|-= +++.-|+|..+ +|. +... ....+| |-..... +.-
T Consensus 183 l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ 262 (708)
T PF05804_consen 183 LATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ 262 (708)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 5556555555444433311 1100 01234566433 562 1111 111111 1000000 000
Q ss_pred ---HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhcccc
Q psy10178 355 ---QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPC 431 (655)
Q Consensus 355 ---qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~ 431 (655)
.|.++-.|..|+..+.|..-. +-..++..|+++| .+++....-.++..|.+|+--.+--.. + .+.+.
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM-------~~~~iV~~Lv~~L-dr~n~ellil~v~fLkkLSi~~ENK~~-m-~~~gi 332 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKM-------VNKGIVSLLVKCL-DRENEELLILAVTFLKKLSIFKENKDE-M-AESGI 332 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHH-------HhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHH-H-HHcCC
Confidence 123444566666655555443 3577889999998 566778888999999999987664222 2 34578
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCCchhhH--HHHHHHHHHhhhhhh
Q psy10178 432 ISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQ--QEQRLLALVMSQILD 509 (655)
Q Consensus 432 I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr~~fl~--~E~RLL~L~mS~ilD 509 (655)
|+.|.+|+.. +|. +++.-|..+|..|+-.+++|..++. .=..|..|.. |
T Consensus 333 V~kL~kLl~s------------------~~~-------~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~----d 383 (708)
T PF05804_consen 333 VEKLLKLLPS------------------ENE-------DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK----D 383 (708)
T ss_pred HHHHHHHhcC------------------CCH-------HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC----C
Confidence 9999999964 122 5667799999999999999987765 3345666654 4
Q ss_pred hHHHHHHHHhhHhhccccccchhhhhHHHHhh-HhccCccccccccccccCCCCcc------------chHHHHHHHHhh
Q psy10178 510 QQVAAIISRVLYQTRPDLYQNSEHASREKRKI-VTKKSVANQHGIGALRDNPDSMG------------TSLDMLRRVANQ 576 (655)
Q Consensus 510 s~V~~ilA~vLfels~~l~~~~~~~~~e~r~i-~~k~sv~~~~~~~~l~d~~~~~~------------~~~~~~~~~~~~ 576 (655)
.+...+.-.+||.+|.+ .+.|.. ...+.|. .++-.|-.+++.-- ..-..+|-+...
T Consensus 384 ~~~~~val~iLy~LS~d---------d~~r~~f~~TdcIp--~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g 452 (708)
T PF05804_consen 384 PNFREVALKILYNLSMD---------DEARSMFAYTDCIP--QLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG 452 (708)
T ss_pred CchHHHHHHHHHHhccC---------HhhHHHHhhcchHH--HHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc
Confidence 56667777899999862 123333 3334443 34444443332211 111145555555
Q ss_pred hhhcccccCCCCCCCcHHHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHHHHH
Q psy10178 577 HGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHP-DNKPLFLQQEQRLLALVMS 629 (655)
Q Consensus 577 hg~~al~~~p~~~gtSv~MmrRAA~~L~~lak~~-enr~~f~~~e~RLL~l~mS 629 (655)
.|+..|++.= +-.+..=+ .+.|..++.|+ .++..|+.|=.-|+.+..+
T Consensus 453 ~gL~~L~~ra-~~~~D~lL----lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 453 NGLQSLMKRA-LKTRDPLL----LKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred CcHHHHHHHH-HhcccHHH----HHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 5555544331 11111111 25788889999 8888898887777776544
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.00 E-value=0.59 Score=39.46 Aligned_cols=80 Identities=25% Similarity=0.279 Sum_probs=60.8
Q ss_pred ChHHHHHHHhhccccc-cCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhcccc
Q psy10178 353 SPQRLALEALCKLCVT-DNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPC 431 (655)
Q Consensus 353 SPqrlALEaL~KLsI~-d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~ 431 (655)
.-+..|+-+|+++|.. +.+...++ -...+..|.++|.. .++..|+.|+.+|.|++..... .+....+.+.
T Consensus 22 ~~~~~a~~~l~~l~~~~~~~~~~~~-------~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~ 92 (120)
T cd00020 22 NVQREAAWALSNLSAGNNDNIQAVV-------EAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPED-NKLIVLEAGG 92 (120)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-------HCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHH-HHHHHHHCCC
Confidence 3567888899999887 56665554 23667778888765 4668899999999999998765 4445667788
Q ss_pred HHHHHHHHHH
Q psy10178 432 ISLLVAFIEQ 441 (655)
Q Consensus 432 I~~Ll~FLE~ 441 (655)
+..|+.++..
T Consensus 93 l~~l~~~l~~ 102 (120)
T cd00020 93 VPKLVNLLDS 102 (120)
T ss_pred hHHHHHHHhc
Confidence 9999999877
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.53 E-value=1.2 Score=46.28 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=119.2
Q ss_pred CCCChhhHHhhh-h-HHHHhhhhhccccccCchhhhhcCcchHHHHHHHHHhhhccccccccCCCCCCCCCccccccCCC
Q psy10178 205 YPVSDSQDNIAR-R-CIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSL 282 (655)
Q Consensus 205 ~~~~e~qd~la~-R-cicvSNIlR~LSFvPgNe~emakh~~lL~iLgrlLlLhheH~~r~~~~~~y~~ed~d~~~~~~~~ 282 (655)
|.+..+.|...+ + +++++| ..+++| | .+..++-|.+.+++.+|-- .+
T Consensus 19 ~lL~~t~dp~i~e~al~al~n-~aaf~~---n-q~~Ir~~Ggi~lI~~lL~~----------------p~---------- 67 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGN-SAAFPF---N-QDIIRDLGGISLIGSLLND----------------PN---------- 67 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHh-hccChh---H-HHHHHHcCCHHHHHHHcCC----------------CC----------
Confidence 344444444444 4 456666 466654 3 4567778889999999911 11
Q ss_pred CccchhhhHHHHHHHhhhhhHHhhhhccccccccCCCCCCchhhhhhhhhcccccccCCCCCCCCCCCCCChHHHHHHHh
Q psy10178 283 SPQAESEWWWDYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEAL 362 (655)
Q Consensus 283 ~~~~~~~Wwwd~l~~LReNaLVtLaNiagqLDLs~ypesI~~PILdGLLHWaVCpsA~aqDPfps~~~~lSPqrlALEaL 362 (655)
..+|+.|+-.+.|+|+..+--.- | .--+..++.+.++ ..-|. .=|..+|-+|
T Consensus 68 -------------~~vr~~AL~aL~Nls~~~en~~~---I-k~~i~~Vc~~~~s---~~lns--------~~Q~agLrlL 119 (254)
T PF04826_consen 68 -------------PSVREKALNALNNLSVNDENQEQ---I-KMYIPQVCEETVS---SPLNS--------EVQLAGLRLL 119 (254)
T ss_pred -------------hHHHHHHHHHHHhcCCChhhHHH---H-HHHHHHHHHHHhc---CCCCC--------HHHHHHHHHH
Confidence 27899999999999987542221 1 1123344555442 11121 3467899999
Q ss_pred hccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHH
Q psy10178 363 CKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQA 442 (655)
Q Consensus 363 ~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~ 442 (655)
+.|+|.+.+.-++.. -+..|.++|.. ++...|.-++-+|.||++-..-+-..++.| +.+.++......
T Consensus 120 ~nLtv~~~~~~~l~~---------~i~~ll~LL~~-G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q--~~~~~~~Lf~~~ 187 (254)
T PF04826_consen 120 TNLTVTNDYHHMLAN---------YIPDLLSLLSS-GSEKTKVQVLKVLVNLSENPDMTRELLSAQ--VLSSFLSLFNSS 187 (254)
T ss_pred HccCCCcchhhhHHh---------hHHHHHHHHHc-CChHHHHHHHHHHHHhccCHHHHHHHHhcc--chhHHHHHHccC
Confidence 999999988766541 23345566644 566789999999999998655534445554 456666655541
Q ss_pred HHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCC
Q psy10178 443 EQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNK 489 (655)
Q Consensus 443 ~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr 489 (655)
++-+++.|+......+.++-...
T Consensus 188 ------------------------~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 188 ------------------------ESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ------------------------CccHHHHHHHHHHHHHHHhhCcc
Confidence 23378888888888886655543
No 16
>PHA03247 large tegument protein UL36; Provisional
Probab=86.98 E-value=1.9 Score=56.79 Aligned_cols=22 Identities=5% Similarity=-0.087 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhh--ccccccccCC
Q psy10178 245 LRLLGRLILAYH--EHGLRATKTR 266 (655)
Q Consensus 245 L~iLgrlLlLhh--eH~~r~~~~~ 266 (655)
+..-+.-|.||. +++.+..+..
T Consensus 3004 ~~~w~~~~~~~~~~~~~~~sl~q~ 3027 (3151)
T PHA03247 3004 VSSWASSLALHEETDPPPVSLKQT 3027 (3151)
T ss_pred cchhhhhccccccCCCCCCCcccC
Confidence 445566666763 5555554443
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.73 E-value=6 Score=33.35 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCC
Q psy10178 387 LTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMG 466 (655)
Q Consensus 387 L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~g 466 (655)
++..|+++|... +...|+.|+.+|.+++..+......+. +.+.+..|+.+|.+ ++
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~------------------~~----- 62 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKS------------------ED----- 62 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhC------------------CC-----
Confidence 566788887544 468899999999999999766455443 35778999988865 11
Q ss_pred CcHHHHHHHHHHHHHhccCCCC
Q psy10178 467 TSLDMLRRTARTLLHLSRHPDN 488 (655)
Q Consensus 467 tSv~MlRRAA~~L~~LAk~peN 488 (655)
..+.+.|+.+|-.|+..+..
T Consensus 63 --~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 63 --EEVVKAALWALRNLAAGPED 82 (120)
T ss_pred --HHHHHHHHHHHHHHccCcHH
Confidence 25667788999999987653
No 18
>KOG1830|consensus
Probab=86.21 E-value=2.4 Score=47.55 Aligned_cols=8 Identities=38% Similarity=0.185 Sum_probs=3.1
Q ss_pred cccccccC
Q psy10178 181 AGNAKRRR 188 (655)
Q Consensus 181 ~~~~~~~~ 188 (655)
+..+.||.
T Consensus 490 atiLsRRi 497 (518)
T KOG1830|consen 490 ATILSRRI 497 (518)
T ss_pred HHHHHHHH
Confidence 33343443
No 19
>PRK15313 autotransport protein MisL; Provisional
Probab=85.65 E-value=1.4 Score=53.20 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=10.2
Q ss_pred CCCcccccccccCCcccc
Q psy10178 87 SDVHVVKSEDKANGMTTT 104 (655)
Q Consensus 87 s~~~Vv~~e~k~~g~~~~ 104 (655)
..||+-.+-++.|-+-|.
T Consensus 650 n~LF~~tLhDR~GEt~y~ 667 (955)
T PRK15313 650 NTLFMTRLHDRLGETQYT 667 (955)
T ss_pred HHHhhccHHHhCCCcccc
Confidence 456666666666654443
No 20
>PRK09752 adhesin; Provisional
Probab=85.25 E-value=0.81 Score=56.38 Aligned_cols=8 Identities=0% Similarity=-0.238 Sum_probs=3.7
Q ss_pred cccccccc
Q psy10178 102 TTTKPEET 109 (655)
Q Consensus 102 ~~~e~~~t 109 (655)
.|.+.+-.
T Consensus 987 ~W~R~~GG 994 (1250)
T PRK09752 987 LNLRVIGG 994 (1250)
T ss_pred eEEEeecC
Confidence 45554433
No 21
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=82.88 E-value=1 Score=53.08 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=92.8
Q ss_pred HhhhhhHHhhhhccccc--cccCCCCCCchhhhhhhhhcccccccCCCCCCCCCCCCCChHHHHHHHhhccccccCCcce
Q psy10178 297 NIRENVLVSLANISGHI--DLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDL 374 (655)
Q Consensus 297 ~LReNaLVtLaNiagqL--DLs~ypesI~~PILdGLLHWaVCpsA~aqDPfps~~~~lSPqrlALEaL~KLsI~d~NVdl 374 (655)
+|---++..|.|+|-.. .....-..|...++.-| -- .+ .-=.-+++-.|.||||...|-+-
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~L-dr--------~n--------~ellil~v~fLkkLSi~~ENK~~ 326 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCL-DR--------EN--------EELLILAVTFLKKLSIFKENKDE 326 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHH-cC--------CC--------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 33336788899998633 33333333333333222 11 11 11234688999999999999999
Q ss_pred eecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcc
Q psy10178 375 VIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHG 454 (655)
Q Consensus 375 iLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hg 454 (655)
+.+. +++..|++++...+ ...++.|+-+|.||+-.... |.-=.+.++|..|+.+|.+.. .+
T Consensus 327 m~~~-------giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~~--R~~mV~~GlIPkLv~LL~d~~--------~~- 387 (708)
T PF05804_consen 327 MAES-------GIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPEL--RSQMVSLGLIPKLVELLKDPN--------FR- 387 (708)
T ss_pred HHHc-------CCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHHH--HHHHHHCCCcHHHHHHhCCCc--------hH-
Confidence 8744 45566777775544 47899999999999976655 333345688999999997621 00
Q ss_pred cCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCCchhh
Q psy10178 455 IGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFL 493 (655)
Q Consensus 455 i~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr~~fl 493 (655)
.+ |..+|.+|+..+++|+.|.
T Consensus 388 ---------------~v---al~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 388 ---------------EV---ALKILYNLSMDDEARSMFA 408 (708)
T ss_pred ---------------HH---HHHHHHHhccCHhhHHHHh
Confidence 11 5667788888888777774
No 22
>KOG1925|consensus
Probab=80.02 E-value=2.8 Score=48.13 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=20.6
Q ss_pred ccCCccccccccccccccccccCchhhhhcc
Q psy10178 97 KANGMTTTKPEETSVKIENNKEGESTVKKEN 127 (655)
Q Consensus 97 k~~g~~~~e~~~tK~~l~~~~~~~s~~~k~~ 127 (655)
|-.|+.|.-.|...++---+-..|-+++|++
T Consensus 304 r~~~t~W~s~D~~~~D~~r~~~LFEsr~~~~ 334 (817)
T KOG1925|consen 304 RPCATLWASLDPVSVDTARLEHLFESRAKEV 334 (817)
T ss_pred cccchhhhccCcceecHHHHHHHHHHhhhhh
Confidence 5559999999888755544445566666554
No 23
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=79.39 E-value=4.4 Score=46.72 Aligned_cols=6 Identities=0% Similarity=-0.058 Sum_probs=2.5
Q ss_pred cccccc
Q psy10178 111 VKIENN 116 (655)
Q Consensus 111 ~~l~~~ 116 (655)
+-+|-|
T Consensus 334 i~~p~f 339 (574)
T PF07462_consen 334 IALPLF 339 (574)
T ss_pred eeccCC
Confidence 344443
No 24
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.89 E-value=1.6 Score=53.96 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=5.1
Q ss_pred cccccccCCC
Q psy10178 310 SGHIDLDQYP 319 (655)
Q Consensus 310 agqLDLs~yp 319 (655)
+.|||+-.|.
T Consensus 384 ~~ql~~h~~d 393 (2365)
T COG5178 384 GVQLDNHPYD 393 (2365)
T ss_pred cccccccccc
Confidence 4555555544
No 25
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=76.12 E-value=16 Score=40.76 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=70.4
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcH
Q psy10178 390 VLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSL 469 (655)
Q Consensus 390 ~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv 469 (655)
++..+|...++ ..||.||=.|-|.|+-+++ ||-.-++.++..-|+..|+... ++ +
T Consensus 161 lfiqlL~s~~~-~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~------------------~~-----i 215 (526)
T COG5064 161 LFIQLLSSTED-DVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSA------------------IH-----I 215 (526)
T ss_pred HHHHHHcCchH-HHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhcc------------------ch-----H
Confidence 45667766666 5599999999999965555 9999999999999999988632 21 4
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHhhc
Q psy10178 470 DMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTR 524 (655)
Q Consensus 470 ~MlRRAA~~L~~LAk~peNr~~fl~~E~RLL~L~mS~ilDs~V~~ilA~vLfels 524 (655)
-|+|-|.=+|-.|+|--..-+-..--...|--|.+. +.++=-.++.+..|.+|
T Consensus 216 smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KL--iys~D~evlvDA~WAiS 268 (526)
T COG5064 216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL--IYSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHH--HhhcCHHHHHHHHHHHH
Confidence 688888888888887433333333233333333332 22222345556666553
No 26
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=75.60 E-value=8.2 Score=46.07 Aligned_cols=20 Identities=45% Similarity=1.002 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy10178 39 GEKNNKPPSGPPTPGGPPPG 58 (655)
Q Consensus 39 ~~~~~~pppppppp~~ppPp 58 (655)
++..+.||||++|+++|+++
T Consensus 707 ~g~g~~~ppp~~~~g~~~~~ 726 (759)
T PF05518_consen 707 GGGGAAPPPPAPPPGPPPPP 726 (759)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 34444555555544444444
No 27
>KOG0168|consensus
Probab=75.06 E-value=9.9 Score=46.17 Aligned_cols=165 Identities=22% Similarity=0.291 Sum_probs=104.0
Q ss_pred HHHHhhccc--cccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHH
Q psy10178 358 ALEALCKLC--VTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLL 435 (655)
Q Consensus 358 ALEaL~KLs--I~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~L 435 (655)
.||+|-.|| +.-.|.+.+- +.|. ..|+-.|+.||.+.++...--.|...|.||+++=.. +..++..-.+|.-|
T Consensus 185 Qleal~Elce~L~mgnEesLs-~fpv---~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~-S~a~vV~~~aIPvl 259 (1051)
T KOG0168|consen 185 QLEALTELCEMLSMGNEESLS-GFPV---KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR-SSAIVVDEHAIPVL 259 (1051)
T ss_pred HHHHHHHHHHHHhhcchhhhc-cccH---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc-hhheeecccchHHH
Confidence 456665555 3345666544 6665 899999999999999999999999999999998776 44566666677665
Q ss_pred ------HHHHHHHHHH--HH-hhhhhcccCcCCCCCCCCCCc------HHHHHHHHHHHHHhccC--CCC----------
Q psy10178 436 ------VAFIEQAEQN--AL-GVANQHGIGALRDNPDSMGTS------LDMLRRTARTLLHLSRH--PDN---------- 488 (655)
Q Consensus 436 ------l~FLE~~~~n--a~-~van~hgi~aL~~~Pe~~gtS------v~MlRRAA~~L~~LAk~--peN---------- 488 (655)
|.||..+||. |+ .++..|+-.=|+.+--+.+.+ ...=|.|..+....++- ++.
T Consensus 260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPl 339 (1051)
T KOG0168|consen 260 LEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPL 339 (1051)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 4577677666 33 777778866665444333332 23345555555544432 111
Q ss_pred -----------------------CchhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHhhccccc
Q psy10178 489 -----------------------KPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLY 528 (655)
Q Consensus 489 -----------------------r~~fl~~E~RLL~L~mS~ilDs~V~~ilA~vLfels~~l~ 528 (655)
--.|..+..+|-+||--.++. ++.++|....--|+.++|
T Consensus 340 L~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~-~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 340 LTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLIT-NIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHH-HHHHHHhcCcccccccch
Confidence 113555666777777666665 555555544444555555
No 28
>KOG1922|consensus
Probab=73.55 E-value=14 Score=43.84 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=15.6
Q ss_pred hhccccccchhhhhHHHHhhHhccCcc
Q psy10178 522 QTRPDLYQNSEHASREKRKIVTKKSVA 548 (655)
Q Consensus 522 els~~l~~~~~~~~~e~r~i~~k~sv~ 548 (655)
.+-++++...+.+|.|-+.+.+|-+++
T Consensus 770 ~~~r~fl~~~~~~~~e~~~~~~k~~~~ 796 (833)
T KOG1922|consen 770 SILRDFLRTFDKAHEENKKAEEKEKTY 796 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333444455566777766666666555
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=73.26 E-value=22 Score=37.08 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCC
Q psy10178 386 RLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSM 465 (655)
Q Consensus 386 ~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~ 465 (655)
+-++.|+.+|...+++..+|.|..+|.|.+.- .+++.+-.+-+.++.+..+|.. |.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~--------------------p~-- 67 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLND--------------------PN-- 67 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCC--------------------CC--
Confidence 44578888889999999999999999998654 3566666777777777777665 32
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHhhcc
Q psy10178 466 GTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRP 525 (655)
Q Consensus 466 gtSv~MlRRAA~~L~~LAk~peNr~~fl~~E~RLL~L~mS~ilDs~V~~ilA~vLfels~ 525 (655)
..+=.+|..+|..|+...+|....--|-..+...++|.-+|+.|-.---+.|..++-
T Consensus 68 ---~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv 124 (254)
T PF04826_consen 68 ---PSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV 124 (254)
T ss_pred ---hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC
Confidence 244467999999999999998887789999999999988999998666688888863
No 30
>KOG0166|consensus
Probab=70.54 E-value=13 Score=42.70 Aligned_cols=128 Identities=25% Similarity=0.377 Sum_probs=91.6
Q ss_pred HHhhhhhHHhhhhccccc-cccCCCCCCchhhhhhhhhcccccccCCCCCCCCCCCCCChHHHHHHHhhccccccCCcce
Q psy10178 296 ENIRENVLVSLANISGHI-DLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDL 374 (655)
Q Consensus 296 ~~LReNaLVtLaNiagqL-DLs~ypesI~~PILdGLLHWaVCpsA~aqDPfps~~~~lSPqrlALEaL~KLsI~d~NVdl 374 (655)
..+||-|+=.|+||+|.= ++..| =+..-+++.||+-.- .+ ..+|-.|-+.=+|..||-..+
T Consensus 166 ~~v~eQavWALgNIagds~~~Rd~--vl~~g~l~pLl~~l~-------~~-----~~~~~lRn~tW~LsNlcrgk~---- 227 (514)
T KOG0166|consen 166 ADVREQAVWALGNIAGDSPDCRDY--VLSCGALDPLLRLLN-------KS-----DKLSMLRNATWTLSNLCRGKN---- 227 (514)
T ss_pred HHHHHHHHHHHhccccCChHHHHH--HHhhcchHHHHHHhc-------cc-----cchHHHHHHHHHHHHHHcCCC----
Confidence 378999999999999832 22222 012234444555431 11 116778888889999998877
Q ss_pred eecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHH
Q psy10178 375 VIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQN 445 (655)
Q Consensus 375 iLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~n 445 (655)
--|||.-+..++..|.+||-.....+ ..-|.-+|+||+-+..+.-. ....-+.+..|+.+|+...-+
T Consensus 228 --P~P~~~~v~~iLp~L~~ll~~~D~~V-l~Da~WAlsyLsdg~ne~iq-~vi~~gvv~~LV~lL~~~~~~ 294 (514)
T KOG0166|consen 228 --PSPPFDVVAPILPALLRLLHSTDEEV-LTDACWALSYLTDGSNEKIQ-MVIDAGVVPRLVDLLGHSSPK 294 (514)
T ss_pred --CCCcHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHhcCChHHHH-HHHHccchHHHHHHHcCCCcc
Confidence 67789999999999999986555555 48899999999987777444 445567789999999986543
No 31
>PHA03211 serine/threonine kinase US3; Provisional
Probab=69.55 E-value=5.1 Score=44.41 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.8
Q ss_pred HhcCCCCch
Q psy10178 606 LSRHPDNKP 614 (655)
Q Consensus 606 lak~~enr~ 614 (655)
|...|+.|+
T Consensus 439 L~~DP~~RP 447 (461)
T PHA03211 439 LTFDGARRP 447 (461)
T ss_pred cccChhhCc
Confidence 334444444
No 32
>KOG0166|consensus
Probab=68.41 E-value=33 Score=39.71 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=77.8
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHH
Q psy10178 391 LTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLD 470 (655)
Q Consensus 391 LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~ 470 (655)
|++||...+. ..||.|+-.|.|.|...+. ||-+....+++.-|+.+|.... + .-
T Consensus 157 fi~Ll~s~~~-~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~------------------~------~~ 210 (514)
T KOG0166|consen 157 FIQLLSSPSA-DVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSD------------------K------LS 210 (514)
T ss_pred HHHHhcCCcH-HHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhcccc------------------c------hH
Confidence 7888877777 4599999999999976666 9999999999999999987621 1 46
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHhh-hhhhhHHHHHHHHhhHhhc
Q psy10178 471 MLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMS-QILDQQVAAIISRVLYQTR 524 (655)
Q Consensus 471 MlRRAA~~L~~LAk~peNr~~fl~~E~RLL~L~mS-~ilDs~V~~ilA~vLfels 524 (655)
|+|-|+-+|-.|++.....+.|-.-+.-|-.|+.. ...|.+| ++++.|.|+
T Consensus 211 ~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~V---l~Da~WAls 262 (514)
T KOG0166|consen 211 MLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEV---LTDACWALS 262 (514)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHH
Confidence 99999999999999887777776555544444322 2345444 456666554
No 33
>KOG1830|consensus
Probab=66.86 E-value=13 Score=42.18 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.0
Q ss_pred ChhhHHhhhhH
Q psy10178 208 SDSQDNIARRC 218 (655)
Q Consensus 208 ~e~qd~la~Rc 218 (655)
.++.+..++|-
T Consensus 473 eeqreqeakr~ 483 (518)
T KOG1830|consen 473 EEQREQEAKRE 483 (518)
T ss_pred HHHHHHHHhhc
Confidence 33444455554
No 34
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=66.62 E-value=15 Score=40.37 Aligned_cols=7 Identities=43% Similarity=0.320 Sum_probs=2.8
Q ss_pred HHHHhhc
Q psy10178 411 LHYLAAA 417 (655)
Q Consensus 411 L~nLa~~ 417 (655)
|++.|+.
T Consensus 350 l~kEaqR 356 (407)
T PF04625_consen 350 LHKEAQR 356 (407)
T ss_pred HHHHHHH
Confidence 3444443
No 35
>KOG0559|consensus
Probab=64.72 E-value=22 Score=39.78 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=8.2
Q ss_pred ccccccccccCCCCC
Q psy10178 190 SEYEDESYCRDEASL 204 (655)
Q Consensus 190 ~~~edE~~~~DE~~L 204 (655)
.|=+|+-.-||=..+
T Consensus 307 vIdg~~iVYRDyvDI 321 (457)
T KOG0559|consen 307 VIDGDDIVYRDYVDI 321 (457)
T ss_pred eecCCeeEEeeccee
Confidence 445556666665444
No 36
>PRK15313 autotransport protein MisL; Provisional
Probab=63.80 E-value=11 Score=46.04 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=5.6
Q ss_pred cchhhhHHHH
Q psy10178 285 QAESEWWWDY 294 (655)
Q Consensus 285 ~~~~~Wwwd~ 294 (655)
.-+..||.+.
T Consensus 883 YveANWlHn~ 892 (955)
T PRK15313 883 FVEANWIHNT 892 (955)
T ss_pred EEEEEEEEec
Confidence 3455676654
No 37
>KOG4849|consensus
Probab=63.44 E-value=15 Score=40.83 Aligned_cols=6 Identities=67% Similarity=1.641 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy10178 27 HGGPPP 32 (655)
Q Consensus 27 ~~~ppp 32 (655)
.|-|||
T Consensus 251 ~Gqppp 256 (498)
T KOG4849|consen 251 NGQPPP 256 (498)
T ss_pred CCCCCC
Confidence 333333
No 38
>KOG1048|consensus
Probab=62.36 E-value=17 Score=43.33 Aligned_cols=123 Identities=19% Similarity=0.157 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChh----hHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccC
Q psy10178 381 YARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSA----MSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIG 456 (655)
Q Consensus 381 fsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~----~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~ 456 (655)
|-+++.++..--.||..-.+...-|.+..+|.||+.++-. +++.+-.++....-|+++|+.
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~--------------- 577 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN--------------- 577 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc---------------
Confidence 4457777777666777777888899999999999998644 344454555557788888887
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCCchhhHHHHH-----HHHHHhhhhhhhHHHHHHHHhhHhhccccc
Q psy10178 457 ALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQR-----LLALVMSQILDQQVAAIISRVLYQTRPDLY 528 (655)
Q Consensus 457 aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr~~fl~~E~R-----LL~L~mS~ilDs~V~~ilA~vLfels~~l~ 528 (655)
+++ +++|-+|..|..|++.+.||.+.-.|=.+ |=+..-+..++-.+...+|-+|+++.++=.
T Consensus 578 ---~~~-------~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~ 644 (717)
T KOG1048|consen 578 ---DDS-------DVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV 644 (717)
T ss_pred ---CCc-------hHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH
Confidence 223 68899999999999999998777654322 112222333555666777888888875433
No 39
>KOG1077|consensus
Probab=62.31 E-value=15 Score=44.13 Aligned_cols=75 Identities=25% Similarity=0.417 Sum_probs=53.8
Q ss_pred HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHH
Q psy10178 355 QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISL 434 (655)
Q Consensus 355 qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~ 434 (655)
|-||||++||||-++.-.|-+ .+=-......|....+...|.+|+-+|+.+|-.+.. |.-|+.
T Consensus 346 RYLaLEsm~~L~ss~~s~dav---------K~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na--------k~IV~e 408 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFSIDAV---------KKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA--------KQIVAE 408 (938)
T ss_pred hhhhHHHHHHHHhccchHHHH---------HHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH--------HHHHHH
Confidence 448999999999775433322 122334445556677888999999999988866444 677999
Q ss_pred HHHHHHHHHHHH
Q psy10178 435 LVAFIEQAEQNA 446 (655)
Q Consensus 435 Ll~FLE~~~~na 446 (655)
|+.|||.++..+
T Consensus 409 lLqYL~tAd~si 420 (938)
T KOG1077|consen 409 LLQYLETADYSI 420 (938)
T ss_pred HHHHHhhcchHH
Confidence 999999986443
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=60.92 E-value=56 Score=36.97 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCC
Q psy10178 384 LERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPD 463 (655)
Q Consensus 384 le~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe 463 (655)
++++...|.+.|. |.++..|++++..|.++++.+.+++ .+......+..++.+|.+ +|
T Consensus 75 ~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~-~~~~~~~l~~~i~~~L~~--------------------~d 132 (503)
T PF10508_consen 75 LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAA-QLLVDNELLPLIIQCLRD--------------------PD 132 (503)
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHH-HHhcCccHHHHHHHHHcC--------------------Cc
Confidence 7888999999984 6667889999999999998887744 466777788889998877 33
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCchh
Q psy10178 464 SMGTSLDMLRRTARTLLHLSRHPDNKPLF 492 (655)
Q Consensus 464 ~~gtSv~MlRRAA~~L~~LAk~peNr~~f 492 (655)
..+-..|+.+|..|++.+.+-..+
T Consensus 133 -----~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 133 -----LSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred -----HHHHHHHHHHHHHHhCCchhHHHH
Confidence 244556899999999987765443
No 41
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=60.36 E-value=24 Score=41.10 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=13.8
Q ss_pred CCCCcccccCCCcccccccccCCcc
Q psy10178 78 PSKPNTIVNSDVHVVKSEDKANGMT 102 (655)
Q Consensus 78 ps~P~k~fns~~~Vv~~e~k~~g~~ 102 (655)
|+||-++= +|+.+.-.-|+|+-
T Consensus 277 P~npR~iP---lWl~r~a~AIeGVf 298 (582)
T PF03276_consen 277 PTNPRDIP---LWLGRNAPAIEGVF 298 (582)
T ss_pred CCChhhcc---hhhhccchhhcccc
Confidence 55554443 88777666777764
No 42
>KOG4224|consensus
Probab=59.17 E-value=18 Score=40.77 Aligned_cols=132 Identities=19% Similarity=0.215 Sum_probs=80.8
Q ss_pred cccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHH
Q psy10178 365 LCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQ 444 (655)
Q Consensus 365 LsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~ 444 (655)
++|.|-|..+|. =.+|..-|||+|.-..+..-+=-|+.+|-|||...+. .+.+--+.++|..|+..+-++--
T Consensus 319 isihplNe~lI~-------dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~-n~~~i~esgAi~kl~eL~lD~pv 390 (550)
T KOG4224|consen 319 ISIHPLNEVLIA-------DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH-NVSVIRESGAIPKLIELLLDGPV 390 (550)
T ss_pred cccccCccccee-------cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh-hhHHHhhcCchHHHHHHHhcCCh
Confidence 899999999998 3456778999987666655677899999999996655 33344567889888877654321
Q ss_pred -----HHHhhhh------------hcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCCchhh--------HHHHHH
Q psy10178 445 -----NALGVAN------------QHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFL--------QQEQRL 499 (655)
Q Consensus 445 -----na~~van------------~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr~~fl--------~~E~RL 499 (655)
.+-++++ .+||...- -|=....|.++=--||.+|..|+..-++++-|. --+.||
T Consensus 391 svqseisac~a~Lal~d~~k~~lld~gi~~iL-Ip~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L 469 (550)
T KOG4224|consen 391 SVQSEISACIAQLALNDNDKEALLDSGIIPIL-IPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL 469 (550)
T ss_pred hHHHHHHHHHHHHHhccccHHHHhhcCCccee-ecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence 1111111 12322210 022222334444457888888887666544433 134555
Q ss_pred HHHHhh
Q psy10178 500 LALVMS 505 (655)
Q Consensus 500 L~L~mS 505 (655)
.-|-.|
T Consensus 470 ~Rfl~S 475 (550)
T KOG4224|consen 470 ARFLAS 475 (550)
T ss_pred HHHHhh
Confidence 555555
No 43
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=57.01 E-value=5.6 Score=43.78 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=37.3
Q ss_pred CCCCCCCCccccc-CCCcccccccccCCcccccccccc-ccccccccCchhh
Q psy10178 74 DETAPSKPNTIVN-SDVHVVKSEDKANGMTTTKPEETS-VKIENNKEGESTV 123 (655)
Q Consensus 74 d~~~ps~P~k~fn-s~~~Vv~~e~k~~g~~~~e~~~tK-~~l~~~~~~~s~~ 123 (655)
..++|++++|.++ .++. ..++.||+|.+.++.+ ++...+.+.|++.
T Consensus 2 ~~~~P~~klK~l~W~ki~----~~~~~~tvW~~i~~~~~~d~~~lE~lF~~k 49 (432)
T smart00498 2 KEPKPKKKLKPLHWDKLN----PLDPRGTVWDKIDENSEGDLDELEELFAAK 49 (432)
T ss_pred CCCCCCCCCcCcCceeCC----CccccCChhhhcCcccccCHHHHHHHhCcC
Confidence 4568899999997 6666 6678899999998875 7788888888863
No 44
>KOG0162|consensus
Probab=52.79 E-value=44 Score=40.49 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCccccccccCCCCC
Q psy10178 53 GGPPPGPDMNVGPKVKCISYYDETAP 78 (655)
Q Consensus 53 ~~ppPpp~m~~g~~p~~~~k~d~~~p 78 (655)
+-|||||++-+.-.|.+.+.+|-+.-
T Consensus 1038 g~P~PpPp~~~~k~p~~~A~Y~y~gq 1063 (1106)
T KOG0162|consen 1038 GRPKPPPPAKPPKNPVCEALYDYPGQ 1063 (1106)
T ss_pred CCCCccCCCCCCCCcceeeeccCCCC
Confidence 33555555555555777777666633
No 45
>KOG2391|consensus
Probab=52.28 E-value=35 Score=37.84 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=3.2
Q ss_pred cccccccC
Q psy10178 112 KIENNKEG 119 (655)
Q Consensus 112 ~l~~~~~~ 119 (655)
+.++.|++
T Consensus 233 eq~slkRt 240 (365)
T KOG2391|consen 233 EQESLKRT 240 (365)
T ss_pred HHHHHHhh
Confidence 33444444
No 46
>KOG1925|consensus
Probab=51.61 E-value=16 Score=42.41 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=10.2
Q ss_pred HHHHHhhhhh-----HHhhhhccccc
Q psy10178 293 DYMENIRENV-----LVSLANISGHI 313 (655)
Q Consensus 293 d~l~~LReNa-----LVtLaNiagqL 313 (655)
.-+++|-+|+ |-+|--|+.+|
T Consensus 462 ~gm~qlE~n~Tf~~il~tLLAIGNfL 487 (817)
T KOG1925|consen 462 VGMEQLEQNATFRCILATLLAIGNFL 487 (817)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhccc
Confidence 3455666663 33444444444
No 47
>PHA03211 serine/threonine kinase US3; Provisional
Probab=50.83 E-value=22 Score=39.51 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q psy10178 57 PGPDMNVG 64 (655)
Q Consensus 57 Ppp~m~~g 64 (655)
|+++.+.+
T Consensus 56 ~~~~~~~~ 63 (461)
T PHA03211 56 PSPHGARD 63 (461)
T ss_pred CCCCCchh
Confidence 33333333
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=50.51 E-value=19 Score=43.05 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=52.2
Q ss_pred HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHH
Q psy10178 355 QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISL 434 (655)
Q Consensus 355 qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~ 434 (655)
.+.+||+|.+|+ +++|++.|| .=|.+++. .-+...+..||..+.++|..-+..+ ++||..
T Consensus 350 K~~KLeIL~~La-ne~Nv~~IL------------~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~~~a------~~cV~~ 409 (746)
T PTZ00429 350 KLEKLRLLLKLV-TPSVAPEIL------------KELAEYAS-GVDMVFVVEVVRAIASLAIKVDSVA------PDCANL 409 (746)
T ss_pred HHHHHHHHHHHc-CcccHHHHH------------HHHHHHhh-cCCHHHHHHHHHHHHHHHHhChHHH------HHHHHH
Confidence 679999999886 999987766 34445543 3456788889999999998755544 599999
Q ss_pred HHHHHHH
Q psy10178 435 LVAFIEQ 441 (655)
Q Consensus 435 Ll~FLE~ 441 (655)
|++||+.
T Consensus 410 Ll~ll~~ 416 (746)
T PTZ00429 410 LLQIVDR 416 (746)
T ss_pred HHHHhcC
Confidence 9999976
No 49
>COG5373 Predicted membrane protein [Function unknown]
Probab=47.12 E-value=38 Score=41.30 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=4.6
Q ss_pred hhh-hhhccc
Q psy10178 327 LDG-LLHWAV 335 (655)
Q Consensus 327 LdG-LLHWaV 335 (655)
+-| .+.|..
T Consensus 334 ~aGial~Wp~ 343 (931)
T COG5373 334 YAGIALRWPG 343 (931)
T ss_pred HHHHHHhccc
Confidence 335 566643
No 50
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=46.34 E-value=1.2e+02 Score=34.15 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHH------HHHhccCCCC--Cchh----hHHHH
Q psy10178 430 PCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTART------LLHLSRHPDN--KPLF----LQQEQ 497 (655)
Q Consensus 430 ~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~------L~~LAk~peN--r~~f----l~~E~ 497 (655)
..|..|+.|||..-... + +.. ..+..++-+-.|++.+.. .+...-.|.. |+.= --..+
T Consensus 242 ~~v~~Ll~~Ld~~l~~~------~---~~~-l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKY------E---ALK-LDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred HHHHHHHHHHHHHHHhc------C---ccc-chhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 45899999999954221 1 000 134555555566655543 1111112221 0000 01468
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhHhhccccccchhhhhHH
Q psy10178 498 RLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASRE 537 (655)
Q Consensus 498 RLL~L~mS~ilDs~V~~ilA~vLfels~~l~~~~~~~~~e 537 (655)
||+.|.++.. .+|...+|..||.++.+ +.++.+.+
T Consensus 312 rLlrLmt~~~--~~~k~~vaellf~Lc~~---d~~~~v~~ 346 (446)
T PF10165_consen 312 RLLRLMTSPD--PQLKDAVAELLFVLCKE---DASRFVKY 346 (446)
T ss_pred HHHHHhCCCC--chHHHHHHHHHHHHHhh---hHHHHHHH
Confidence 9999999976 89999999999999742 44555544
No 51
>KOG3036|consensus
Probab=46.30 E-value=51 Score=35.52 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHH
Q psy10178 399 EDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTART 478 (655)
Q Consensus 399 ~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~ 478 (655)
..++.||.|+.=|++--+.-.++| .+||........-.+.+.+.+.+..... -.-..| .=+|-|...
T Consensus 36 ~~~p~rE~aL~ELskkre~~~dlA----------~~lW~s~g~~~~LLqEivaiYp~l~p~~--l~~~qs-nRVcnaL~L 102 (293)
T KOG3036|consen 36 VSPPTREMALLELSKKREPFPDLA----------PMLWHSFGTMVALLQEIVAIYPSLSPPT--LTPAQS-NRVCNALAL 102 (293)
T ss_pred hCCchHHHHHHHHHHhccCCcccc----------HHHHHhcchHHHHHHHHHhcccccCCCC--CCcccc-chHHHHHHH
Confidence 356889999998887777656655 4677766665555567778888755421 111233 347889999
Q ss_pred HHHhccCCCCCchhhH
Q psy10178 479 LLHLSRHPDNKPLFLQ 494 (655)
Q Consensus 479 L~~LAk~peNr~~fl~ 494 (655)
|.|+|++|+-|..|+.
T Consensus 103 lQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 103 LQCVASHPDTRRAFLR 118 (293)
T ss_pred HHHHhcCcchHHHHHH
Confidence 9999999999999984
No 52
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=45.06 E-value=64 Score=40.46 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q psy10178 244 FLRLLGRLI 252 (655)
Q Consensus 244 lL~iLgrlL 252 (655)
||..|..+|
T Consensus 340 FL~~ik~lL 348 (1228)
T PRK12270 340 FLRTIHQLL 348 (1228)
T ss_pred HHHHHHHHH
Confidence 344444443
No 53
>KOG4224|consensus
Probab=44.26 E-value=35 Score=38.60 Aligned_cols=171 Identities=23% Similarity=0.290 Sum_probs=99.5
Q ss_pred hhccccccCchhhhhcCcchHHHHHHHHHhhhccccccccCCCCCCCCCccccccCCCCccchhhhHHHH----------
Q psy10178 225 LRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSLSPQAESEWWWDY---------- 294 (655)
Q Consensus 225 lR~LSFvPgNe~emakh~~lL~iLgrlLlLhheH~~r~~~~~~y~~ed~d~~~~~~~~~~~~~~~Wwwd~---------- 294 (655)
|||+|.-|+||.-.+ ..|||.-|-|+|.-. |.|+ ..|. ...-.|+.
T Consensus 316 IrnisihplNe~lI~-dagfl~pLVrlL~~~-------------dnEe----iqch------AvstLrnLAasse~n~~~ 371 (550)
T KOG4224|consen 316 IRNISIHPLNEVLIA-DAGFLRPLVRLLRAG-------------DNEE----IQCH------AVSTLRNLAASSEHNVSV 371 (550)
T ss_pred HhhcccccCccccee-cccchhHHHHHHhcC-------------Cchh----hhhh------HHHHHHHHhhhhhhhhHH
Confidence 599999999998776 479999999999544 1111 0111 11223332
Q ss_pred ----------HHHhhhhhHHhhhhccccccccCCCCCCch-----hhhhhhhhcccccccCCCCCCCCCCCCCChHHHHH
Q psy10178 295 ----------MENIRENVLVSLANISGHIDLDQYPEDISR-----PILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLAL 359 (655)
Q Consensus 295 ----------l~~LReNaLVtLaNiagqLDLs~ypesI~~-----PILdGLLHWaVCpsA~aqDPfps~~~~lSPqrlAL 359 (655)
.+-+++..+..=+-|++-+-.-.|.+.--. -|++-|+-|.-.-+-+- |.-|.
T Consensus 372 i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev-------------~gNaA 438 (550)
T KOG4224|consen 372 IRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEV-------------RGNAA 438 (550)
T ss_pred HhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhh-------------cccHH
Confidence 333344433333444432211112111111 23444566643333333 34689
Q ss_pred HHhhccccccCCcceeecCCChhh-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhc-ChhhHHHHhhccccHHHH
Q psy10178 360 EALCKLCVTDNNVDLVIATPPYAR-LERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAA-DSAMSRTIALQSPCISLL 435 (655)
Q Consensus 360 EaL~KLsI~d~NVdliLsTpPfsR-le~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~-d~~~~r~iA~qk~~I~~L 435 (655)
++|..+|-..+|--.++.. |.+ .+.+..+|+|++..++- ..|.+|..++..|++. |-.+.-.|.....-|..+
T Consensus 439 aAL~Nlss~v~~YarviEa--wd~P~~gi~g~L~Rfl~S~~~-tf~hia~wTI~qLle~h~~~~~~~i~~~ddii~~~ 513 (550)
T KOG4224|consen 439 AALINLSSDVEHYARVIEA--WDHPVQGIQGRLARFLASHEL-TFRHIARWTIQQLLEDHDLPLTAFIQSSDDIIELL 513 (550)
T ss_pred HHHHhhhhhhHHHHHHHHH--hcCcchhHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHhCCccHHHHHhCchhHHHHH
Confidence 9999999888887777643 222 48899999999866555 7799999888888774 444444454444434333
No 54
>KOG2259|consensus
Probab=43.78 E-value=6.7e+02 Score=30.79 Aligned_cols=204 Identities=19% Similarity=0.255 Sum_probs=131.2
Q ss_pred hHHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHH
Q psy10178 354 PQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCIS 433 (655)
Q Consensus 354 PqrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~ 433 (655)
=++.|.++||+|.. +.|-| -.+-+.+|++.+.+.-+ +.|.-|+-.|..++.. ++....-+.
T Consensus 389 VR~AAV~Sl~~La~---------ssP~F--A~~aldfLvDMfNDE~~-~VRL~ai~aL~~Is~~-------l~i~eeql~ 449 (823)
T KOG2259|consen 389 VRRAAVASLCSLAT---------SSPGF--AVRALDFLVDMFNDEIE-VVRLKAIFALTMISVH-------LAIREEQLR 449 (823)
T ss_pred HHHHHHHHHHHHHc---------CCCCc--HHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHH-------heecHHHHH
Confidence 47789999999864 34567 57888899999876555 6799999999977765 333444455
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q psy10178 434 LLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVA 513 (655)
Q Consensus 434 ~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L~~LAk~peNr~~fl~~E~RLL~L~mS~ilDs~V~ 513 (655)
..+++||+. |++ +|-|+.-|+..+++++ .....+|.-.+++
T Consensus 450 ~il~~L~D~-------------------------s~d-vRe~l~elL~~~~~~d---------~~~i~m~v~~lL~---- 490 (823)
T KOG2259|consen 450 QILESLEDR-------------------------SVD-VREALRELLKNARVSD---------LECIDMCVAHLLK---- 490 (823)
T ss_pred HHHHHHHhc-------------------------CHH-HHHHHHHHHHhcCCCc---------HHHHHHHHHHHHH----
Confidence 566666662 233 4888899999998776 1222333332222
Q ss_pred HHHHHhhHhhccccccchhhhhHHHHhhHhccCccccccccccccCCCCccchHHHHHHHHhhhhhcccccCCCCCC---
Q psy10178 514 AIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGALRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMG--- 590 (655)
Q Consensus 514 ~ilA~vLfels~~l~~~~~~~~~e~r~i~~k~sv~~~~~~~~l~d~~~~~~~~~~~~~~~~~~hg~~al~~~p~~~g--- 590 (655)
.-.++=|+++-.++=-+.|=||--+= -+++|...-.-|+.-+- --|+++-
T Consensus 491 ---------~L~kyPqDrd~i~~cm~~iGqnH~~l-----------------v~s~m~rfl~kh~~f~t-~e~s~ed~~y 543 (823)
T KOG2259|consen 491 ---------NLGKYPQDRDEILRCMGRIGQNHRRL-----------------VLSNMGRFLEKHTSFAT-IEPSLEDGFY 543 (823)
T ss_pred ---------HhhhCCCCcHHHHHHHHHHhccChhh-----------------HHHHHHHHHHhcccccc-cCccccChhh
Confidence 22345578888887777776654322 24577888888888653 3344433
Q ss_pred -CcHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Q psy10178 591 -TSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILD---QQVAAIISRVLY 645 (655)
Q Consensus 591 -tSv~MmrRAA~~L~~lak~~enr~~f~~~e~RLL~l~mS~ild---~~Va~~i~~vLf 645 (655)
.++=|++-||....-+ ---+++|+-+-.+.|-=+++-+-+ ..++.+.|..+=
T Consensus 544 ~akLilv~nAa~~~p~i---i~s~Pea~hrhla~Lr~sspnLv~~~pi~~ld~~~q~~r 599 (823)
T KOG2259|consen 544 IAKLILVRNAARADPGI---IVSRPEAHHRHLAILRCSSPNLVGDGPIFFLDILCQFLR 599 (823)
T ss_pred hhhhhhhhhhhhhCCCe---eeechHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhh
Confidence 3556777777654332 234667777777888777776654 556666665543
No 55
>KOG2677|consensus
Probab=41.85 E-value=82 Score=37.82 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=22.3
Q ss_pred cccccccccCchhhhhccccCCcccccc-----cccccceeeecc
Q psy10178 110 SVKIENNKEGESTVKKENTEGEETVKTD-----NTKEGEATVKLE 149 (655)
Q Consensus 110 K~~l~~~~~~~s~~~k~~~~~~~~~~~~-----~~~~~~~~~~~~ 149 (655)
||++..-+++.--++|.++-+...-.+. ..+ ...+|+|-
T Consensus 195 ~~~~~~~~~~~~~g~ka~~P~l~~~p~~~~~~~~~p-~~s~~~D~ 238 (922)
T KOG2677|consen 195 KMEKLQKKKMEAIGWKASSPALNGHPAPPVTSARFP-SWSTFDDN 238 (922)
T ss_pred cchhhhhhhhhhcccccCCCccCCCCCCcccccccc-cccccccc
Confidence 4777777777777777766554433222 222 45566665
No 56
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=40.91 E-value=23 Score=40.44 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=11.6
Q ss_pred ccCCccccccccccccccccccC
Q psy10178 97 KANGMTTTKPEETSVKIENNKEG 119 (655)
Q Consensus 97 k~~g~~~~e~~~tK~~l~~~~~~ 119 (655)
+++...+..-++.+++.-+++-.
T Consensus 57 ~l~~q~~~yiEdE~~~~~~i~a~ 79 (465)
T PF01690_consen 57 SLNSQRMRYIEDENWNWVNIDAG 79 (465)
T ss_pred ccCceeEEEEecccceeEEecce
Confidence 44455555555555555544443
No 57
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=40.37 E-value=4.4e+02 Score=28.81 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHH
Q psy10178 355 QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSR 423 (655)
Q Consensus 355 qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r 423 (655)
+.+||-+||+++. +-+ .+.+...+.++|..+. +..|.-|+..+.++...+.....
T Consensus 96 ~~lAL~~l~~i~~-----------~~~--~~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 96 RGLALRTLSNIRT-----------PEM--AEPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHHH-S-----------HHH--HHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHhhhhhhcc-----------cch--hhHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 4789999999872 223 5888889999987554 47788899889999888887653
No 58
>KOG3397|consensus
Probab=40.20 E-value=25 Score=36.04 Aligned_cols=9 Identities=56% Similarity=1.121 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q psy10178 55 PPPGPDMNV 63 (655)
Q Consensus 55 ppPpp~m~~ 63 (655)
|+|||+|.|
T Consensus 188 p~pppp~~p 196 (225)
T KOG3397|consen 188 PPPPPPMAP 196 (225)
T ss_pred CcccCCCCc
Confidence 344444444
No 59
>KOG2973|consensus
Probab=39.84 E-value=75 Score=35.20 Aligned_cols=138 Identities=22% Similarity=0.305 Sum_probs=89.4
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHHhhhhhhh--HHHHHHHHhhHhhccccccchhhhhHHHHhhHhccCcccc
Q psy10178 473 RRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQ--QVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQ 550 (655)
Q Consensus 473 RRAA~~L~~LAk~peNr~~fl~~E~RLL~L~mS~ilDs--~V~~ilA~vLfels~~l~~~~~~~~~e~r~i~~k~sv~~~ 550 (655)
+.||.+|..++-.+.=|..++.- |+.+-|.-+.|. -.+.++|-.|-.+++ .-.+.++++++---.
T Consensus 60 ~~a~~alVnlsq~~~l~~~ll~~---~~k~l~~~~~~p~~~lad~~cmlL~NLs~--------~~~~~~~ll~~~~~~-- 126 (353)
T KOG2973|consen 60 EPAATALVNLSQKEELRKKLLQD---LLKVLMDMLTDPQSPLADLICMLLSNLSR--------DDDEVAALLTNLTEK-- 126 (353)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHhcCcccchHHHHHHHHHHhcc--------CchHHHHHHHhcccc--
Confidence 45999999999877777777766 999999998885 567777777766654 334455554443311
Q ss_pred ccccccccCCCCccchHH-HHHHHHhhhhhcccccCCCCCCCcHHHHHHHHHHHHHHhcCCCCchhhHHH----HHHHHH
Q psy10178 551 HGIGALRDNPDSMGTSLD-MLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQ----EQRLLA 625 (655)
Q Consensus 551 ~~~~~l~d~~~~~~~~~~-~~~~~~~~hg~~al~~~p~~~gtSv~MmrRAA~~L~~lak~~enr~~f~~~----e~RLL~ 625 (655)
|-+++- .+... =+||.++ +.+=+ =-|..+-.|++.+..|..|.-- =++|+.
T Consensus 127 ------------~~~~lm~l~~~~-~d~~~n~-~a~f~----------ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ 182 (353)
T KOG2973|consen 127 ------------KDSGLMRLARAF-CDKSYNA-YAEFH----------YLAPVFANLSQFEAGRKLLLEPKRFPDQKLLP 182 (353)
T ss_pred ------------cccchHHHHHHH-hCccccc-ccchh----------HHHHHHHHHhhhhhhhhHhcchhhhhHhhhhc
Confidence 001111 11111 2345542 22222 2366778888888888888732 356777
Q ss_pred HHH--HHhhhHHHHHHHHHHHHhh
Q psy10178 626 LVM--SQILDQQVAAIISRVLYQT 647 (655)
Q Consensus 626 l~m--S~ild~~Va~~i~~vLf~~ 647 (655)
|+= |+|=..+||++|=.+.|..
T Consensus 183 ft~~~s~vRr~GvagtlkN~cFd~ 206 (353)
T KOG2973|consen 183 FTSEDSQVRRGGVAGTLKNCCFDA 206 (353)
T ss_pred ccccchhhhccchHHHHHhhhccc
Confidence 764 8888889999999988864
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=39.68 E-value=38 Score=26.24 Aligned_cols=52 Identities=33% Similarity=0.355 Sum_probs=35.1
Q ss_pred HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q psy10178 355 QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYL 414 (655)
Q Consensus 355 qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nL 414 (655)
|+-|+-+|+.++-... +.+- |+ ++.++..|..+|.+..+.| |+-|.-.|.++
T Consensus 4 R~~A~~aLg~l~~~~~--~~~~---~~--~~~~~~~L~~~L~d~~~~V-R~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCP--ELLQ---PY--LPELLPALIPLLQDDDDSV-RAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTH--HHHH---HH--HHHHHHHHHHHTTSSSHHH-HHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccH--HHHH---HH--HHHHHHHHHHHHcCCCHHH-HHHHHHHHhcC
Confidence 4567777777332222 2221 34 7899999999998888755 99888887754
No 61
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=37.17 E-value=31 Score=39.47 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=4.6
Q ss_pred hhhhhccccccC
Q psy10178 222 SNILRNLTFVPG 233 (655)
Q Consensus 222 SNIlR~LSFvPg 233 (655)
||-.=.=||++|
T Consensus 149 tN~~~~nt~~~G 160 (465)
T PF01690_consen 149 TNYKADNTWKYG 160 (465)
T ss_pred ecccccCcccCC
Confidence 333333333333
No 62
>KOG0307|consensus
Probab=33.38 E-value=1.6e+02 Score=36.92 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred hhHHhhhhHHHHhh--------hhhccccccCchhhhhcCcchHHHHHHHHHh
Q psy10178 210 SQDNIARRCIALSN--------ILRNLTFVPGNELEFSKNSTFLRLLGRLILA 254 (655)
Q Consensus 210 ~qd~la~RcicvSN--------IlR~LSFvPgNe~emakh~~lL~iLgrlLlL 254 (655)
.-+-|.+=|-+|.| |.+.+. + +++....++|-.|=++|-+
T Consensus 997 ~~~~L~~la~~i~~~~y~~a~~i~~~ia---t--t~~~E~s~wmp~lK~ll~~ 1044 (1049)
T KOG0307|consen 997 ITDGLHQLAQSIKNRDYSEALQIHAQIA---T--TEFDECSSWMPGLKRLLQI 1044 (1049)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHh---h--cchhhhhhHHHHHHHHHHH
Confidence 44566665555554 333333 2 2233334466666655533
No 63
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=32.81 E-value=96 Score=30.02 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=49.0
Q ss_pred HHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccH-H
Q psy10178 355 QRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCI-S 433 (655)
Q Consensus 355 qrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I-~ 433 (655)
+..++.+||-||+.=.|+ ++.....|...|.+. ++..|+-|+..|++|...|..-- ++-+ .
T Consensus 5 R~n~i~~l~DL~~r~~~~-----------ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~------k~~l~~ 66 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNL-----------VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV------KGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHhCcHH-----------HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee------hhhhhH
Confidence 567888999888876554 455666777776554 56779999999999999887733 3333 5
Q ss_pred HHHHHHHH
Q psy10178 434 LLVAFIEQ 441 (655)
Q Consensus 434 ~Ll~FLE~ 441 (655)
..+.+|++
T Consensus 67 ~~l~~l~D 74 (178)
T PF12717_consen 67 RILKLLVD 74 (178)
T ss_pred HHHHHHcC
Confidence 55666655
No 64
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=31.15 E-value=81 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q psy10178 385 ERLTYVLTRFLCKNEDQVLREFGVNLLHYLA 415 (655)
Q Consensus 385 e~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa 415 (655)
.+.+..|+++|. ..+...++-|+..|.|++
T Consensus 11 ~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 456778999987 677788999999999987
No 65
>KOG3895|consensus
Probab=31.10 E-value=2.2e+02 Score=32.42 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCC
Q psy10178 14 SGPVDPGASVDME 26 (655)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (655)
..|.-|-|.+...
T Consensus 401 ~sP~rp~t~q~~~ 413 (488)
T KOG3895|consen 401 ESPARPTTSQVPS 413 (488)
T ss_pred CCCCCCcccccCC
Confidence 3334444444444
No 66
>KOG4199|consensus
Probab=30.76 E-value=2.7e+02 Score=31.67 Aligned_cols=86 Identities=20% Similarity=0.177 Sum_probs=60.9
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCC
Q psy10178 387 LTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMG 466 (655)
Q Consensus 387 L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~g 466 (655)
+...|++.|----++..--=+.-+|..||..|+- |..|+...+ ++.|++||.++ |.||+.
T Consensus 242 ~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~-C~~I~e~GG-l~tl~~~i~d~--------n~~~~r---------- 301 (461)
T KOG4199|consen 242 ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI-CKSIAESGG-LDTLLRCIDDS--------NEQGNR---------- 301 (461)
T ss_pred hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH-HHHHHHccC-HHHHHHHHhhh--------chhhHH----------
Confidence 4455666654444444344445667888877765 998887766 99999999993 456652
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCchhhHH
Q psy10178 467 TSLDMLRRTARTLLHLSRHPDNKPLFLQQ 495 (655)
Q Consensus 467 tSv~MlRRAA~~L~~LAk~peNr~~fl~~ 495 (655)
...+-+.++|..||--.++++..+..
T Consensus 302 ---~l~k~~lslLralAG~DsvKs~IV~~ 327 (461)
T KOG4199|consen 302 ---TLAKTCLSLLRALAGSDSVKSTIVEK 327 (461)
T ss_pred ---HHHHHHHHHHHHHhCCCchHHHHHHh
Confidence 35677999999999999998877653
No 67
>KOG0119|consensus
Probab=30.17 E-value=1.8e+02 Score=34.09 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=11.1
Q ss_pred cccccCCCCCCCCcccccCCCc
Q psy10178 69 CISYYDETAPSKPNTIVNSDVH 90 (655)
Q Consensus 69 ~~~k~d~~~ps~P~k~fns~~~ 90 (655)
++..-+-..|..|-..|+|.++
T Consensus 531 ~~~s~~~~~P~pp~~~~pS~~~ 552 (554)
T KOG0119|consen 531 PLFSLLNLAPRPPGQRFPSGVH 552 (554)
T ss_pred chhcccccCCCCCcCCCCCccc
Confidence 3344444455556666665443
No 68
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=30.08 E-value=11 Score=40.15 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=26.5
Q ss_pred ccCCCCCCCCccccc-CCCcccccccccCCcccccccccc----ccccccccCchhhhhc
Q psy10178 72 YYDETAPSKPNTIVN-SDVHVVKSEDKANGMTTTKPEETS----VKIENNKEGESTVKKE 126 (655)
Q Consensus 72 k~d~~~ps~P~k~fn-s~~~Vv~~e~k~~g~~~~e~~~tK----~~l~~~~~~~s~~~k~ 126 (655)
|+...+|+.++|.+. .++. ..++.||+|.+.++.+ .+...+.+.|....++
T Consensus 1 ~k~~~~p~~k~k~l~W~~i~----~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~ 56 (370)
T PF02181_consen 1 KKKKPKPKKKLKPLHWDKIP----NSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKE 56 (370)
T ss_dssp -------SS-B------EES----SGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECH
T ss_pred CCCCCCCCCCCcCCCceecC----cccccCCccccCcccccchhhhHHHHHHHhcccccc
Confidence 356778999999996 6666 7799999999988874 4444445556555443
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.55 E-value=1.9e+02 Score=34.14 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=4.0
Q ss_pred ccccccccC
Q psy10178 111 VKIENNKEG 119 (655)
Q Consensus 111 ~~l~~~~~~ 119 (655)
++++..++.
T Consensus 461 ~~~~~~~~~ 469 (620)
T PRK14954 461 VDLGSWQGK 469 (620)
T ss_pred cccHhhhhh
Confidence 444555433
No 70
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=29.33 E-value=1.8e+02 Score=31.46 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=3.7
Q ss_pred CCcccccc
Q psy10178 99 NGMTTTKP 106 (655)
Q Consensus 99 ~g~~~~e~ 106 (655)
.|+.|..+
T Consensus 205 aGtf~r~p 212 (274)
T PLN02983 205 AGTFYRSP 212 (274)
T ss_pred CeEEEecc
Confidence 35555543
No 71
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=29.18 E-value=1.3e+02 Score=32.24 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHHHHH
Q psy10178 400 DQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTL 479 (655)
Q Consensus 400 ~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA~~L 479 (655)
++..||.|+.-|++--+.-.+++-.+-.+.|.+..|+.=| .+...... .|.+-..--.=+|-|...|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEI----------isiYp~l~---~~~Lt~~~snRVcnaLaLl 74 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEI----------ISIYPALS---PPNLTARQSNRVCNALALL 74 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHH----------HGGGGGTT---TT---HHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHH----------HHHcccCC---CcccCHHHHHHHHHHHHHH
Confidence 5667999999999887777787777777776666655432 22333322 2333333346789999999
Q ss_pred HHhccCCCCCchhhH
Q psy10178 480 LHLSRHPDNKPLFLQ 494 (655)
Q Consensus 480 ~~LAk~peNr~~fl~ 494 (655)
.++|.+|+-|..|+.
T Consensus 75 Q~vAshpetr~~Fl~ 89 (262)
T PF04078_consen 75 QCVASHPETRMPFLK 89 (262)
T ss_dssp HHHHH-TTTHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 999999999988864
No 72
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.86 E-value=1.1e+02 Score=21.76 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=21.8
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhhc
Q psy10178 387 LTYVLTRFLCKNEDQVLREFGVNLLHYLAAA 417 (655)
Q Consensus 387 L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~ 417 (655)
|+..|.+++.+... ..|.+|+..|.++++.
T Consensus 1 llp~l~~~l~D~~~-~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSP-EVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSH-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCH-HHHHHHHHHHHHHHhh
Confidence 34567788776655 5599999999988763
No 73
>KOG3546|consensus
Probab=27.93 E-value=1.2e+02 Score=36.69 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred HHHhhhhhccccccCchhhhhcCcchHHHHHH
Q psy10178 219 IALSNILRNLTFVPGNELEFSKNSTFLRLLGR 250 (655)
Q Consensus 219 icvSNIlR~LSFvPgNe~emakh~~lL~iLgr 250 (655)
+|+=|..|+=|.-=|-|....+..+-..+||-
T Consensus 998 lAaLntprsgslrggadFqcfnqaravglLgt 1029 (1167)
T KOG3546|consen 998 LAALNTPRSGSLRGGADFQCFNQARAVGLLGT 1029 (1167)
T ss_pred hhhhccccccccccccceeeechhhhhhhhhh
Confidence 45667777777766777666665555555543
No 74
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=26.78 E-value=1.2e+02 Score=34.06 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=6.6
Q ss_pred cceeeeccCCCCCCCC
Q psy10178 142 GEATVKLENGGEEPSA 157 (655)
Q Consensus 142 ~~~~~~~~~~~~~~~~ 157 (655)
|.|++.-.-.|..||.
T Consensus 188 Ip~vL~T~InSDlPG~ 203 (376)
T PRK13855 188 IPCILQTAIDTNLAGY 203 (376)
T ss_pred EEEEEecccccCCCCc
Confidence 4444443333444443
No 75
>KOG4849|consensus
Probab=26.21 E-value=2.4e+02 Score=31.91 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.3
Q ss_pred ccccCc
Q psy10178 229 TFVPGN 234 (655)
Q Consensus 229 SFvPgN 234 (655)
|+--||
T Consensus 432 sys~g~ 437 (498)
T KOG4849|consen 432 SYSLGN 437 (498)
T ss_pred cccccc
Confidence 333344
No 76
>COG5373 Predicted membrane protein [Function unknown]
Probab=25.98 E-value=1.3e+02 Score=36.98 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q psy10178 14 SGPVDPGAS 22 (655)
Q Consensus 14 ~~~~~~~~~ 22 (655)
.+|.++.+.
T Consensus 62 a~P~~~~a~ 70 (931)
T COG5373 62 AAPLPAAAE 70 (931)
T ss_pred CCCCCcchh
Confidence 344444433
No 77
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=25.26 E-value=32 Score=31.03 Aligned_cols=84 Identities=24% Similarity=0.448 Sum_probs=54.5
Q ss_pred hhhhHHhhhhccccc--cccCCCCCCchhhhhhhhhcccccccCCCCCCCCCCCCCChHHHHHHHhhccccccCCcceee
Q psy10178 299 RENVLVSLANISGHI--DLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDLVI 376 (655)
Q Consensus 299 ReNaLVtLaNiagqL--DLs~ypesI~~PILdGLLHWaVCpsA~aqDPfps~~~~lSPqrlALEaL~KLsI~d~NVdliL 376 (655)
|-.+|..|+.++..+ +...|-+.|-.|||..+ ..+|+ .=|-+|.|+|-.++-.=.+ .+|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~---------~D~d~--------rVRy~AcEaL~ni~k~~~~--~~l 63 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF---------DDQDS--------RVRYYACEALYNISKVARG--EIL 63 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc---------CCCcH--------HHHHHHHHHHHHHHHHHHH--HHH
Confidence 566777787776554 45556556666766654 22221 2256899999988643322 233
Q ss_pred cCCChhhHHHHHHHHHHhhcccchhHHHHHH
Q psy10178 377 ATPPYARLERLTYVLTRFLCKNEDQVLREFG 407 (655)
Q Consensus 377 sTpPfsRle~L~~~LvrLL~~~~~~v~RE~A 407 (655)
++ ...+|..|.+++.+....| |..|
T Consensus 64 ---~~--f~~IF~~L~kl~~D~d~~V-r~~a 88 (97)
T PF12755_consen 64 ---PY--FNEIFDALCKLSADPDENV-RSAA 88 (97)
T ss_pred ---HH--HHHHHHHHHHHHcCCchhH-HHHH
Confidence 33 7999999999999888865 5544
No 78
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=25.07 E-value=1.9e+02 Score=28.76 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHH
Q psy10178 401 QVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQ 441 (655)
Q Consensus 401 ~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~ 441 (655)
...|=.|+.+|-.+|....+ ++.||.+..||++|+++|-+
T Consensus 108 ~~lRl~aL~~L~~fa~s~~G-~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 108 CTLRLEALRTLTSFAFSPFG-ALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHHcCcHH-HHHHHhCchhHHHHHHHHHc
Confidence 34577788888889988887 77899999999999999865
No 79
>PF08610 Pex16: Peroxisomal membrane protein (Pex16); InterPro: IPR013919 Pex16 is a peripheral protein located at the matrix face of the peroxisomal membrane [].
Probab=23.43 E-value=43 Score=36.09 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=36.1
Q ss_pred hhhhcccc-ccC--chhhhhcCcchHHHHHHHHHhhhccccccccCCC
Q psy10178 223 NILRNLTF-VPG--NELEFSKNSTFLRLLGRLILAYHEHGLRATKTRN 267 (655)
Q Consensus 223 NIlR~LSF-vPg--Ne~emakh~~lL~iLgrlLlLhheH~~r~~~~~~ 267 (655)
..+|+||+ +|| +|.|.+. -+++.+..+|-++|||-.++.....
T Consensus 20 s~lr~lty~lpgRf~~se~~s--E~vys~~nLl~l~nD~Il~~~~~~~ 65 (335)
T PF08610_consen 20 STLRSLTYFLPGRFRDSEIAS--EAVYSLSNLLSLYNDSILSKAIRSL 65 (335)
T ss_pred HHHHHhHHhcCCCCCcchhHH--HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 45899996 999 9999876 7899999999999999887755544
No 80
>KOG0946|consensus
Probab=23.40 E-value=2.9e+02 Score=34.27 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred HHHHHHHhhccccccC------CcceeecCCC-----hhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChh-hH
Q psy10178 355 QRLALEALCKLCVTDN------NVDLVIATPP-----YARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSA-MS 422 (655)
Q Consensus 355 qrlALEaL~KLsI~d~------NVdliLsTpP-----fsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~-~~ 422 (655)
-.+|||+++-+.++++ |---.--++- |-+-+.++..|..++ .+.+-..|-.||.+|+++-..... +-
T Consensus 80 ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q 158 (970)
T KOG0946|consen 80 IKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQ 158 (970)
T ss_pred HHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHH
Confidence 3589999999999885 3221111111 344566777888887 455545599999999998665443 33
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHhhhhhcccCcCCCCCCCCCCcHHHHHHHH-HHHHHhccCCCCCchhhHHHHHHHH
Q psy10178 423 RTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTA-RTLLHLSRHPDNKPLFLQQEQRLLA 501 (655)
Q Consensus 423 r~iA~qk~~I~~Ll~FLE~~~~na~~van~hgi~aL~~~Pe~~gtSv~MlRRAA-~~L~~LAk~peNr~~fl~~E~RLL~ 501 (655)
-+|-.....|+.|++.|-+.+ +.+|-+| -.|-.|.+.-.+=.-++.||+.++.
T Consensus 159 ~~ll~~P~gIS~lmdlL~Dsr--------------------------E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer 212 (970)
T KOG0946|consen 159 DALLVSPMGISKLMDLLRDSR--------------------------EPIRNEAILLLSELVKDNSSIQKLVAFENAFER 212 (970)
T ss_pred HHHHHCchhHHHHHHHHhhhh--------------------------hhhchhHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 346777778999999998854 3344433 3445567766666678889998877
Q ss_pred HH
Q psy10178 502 LV 503 (655)
Q Consensus 502 L~ 503 (655)
|.
T Consensus 213 Lf 214 (970)
T KOG0946|consen 213 LF 214 (970)
T ss_pred HH
Confidence 75
No 81
>KOG3036|consensus
Probab=22.36 E-value=1.3e+02 Score=32.60 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHhhhhhcccccCCCCCCCcHHHHHHHHHHHHHHhcCCCCchhhHH
Q psy10178 562 SMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQ 618 (655)
Q Consensus 562 ~~~~~~~~~~~~~~~hg~~al~~~p~~~gtSv~MmrRAA~~L~~lak~~enr~~f~~ 618 (655)
|.|.-++-.|.+.+-|-+. .-|.+-+---+=+|-|-..|.|+|-|||-|..|++
T Consensus 65 s~g~~~~LLqEivaiYp~l---~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 65 SFGTMVALLQEIVAIYPSL---SPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred hcchHHHHHHHHHhccccc---CCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 5566788899999999875 33446666667899999999999999999999985
No 82
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=22.24 E-value=51 Score=29.74 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=44.3
Q ss_pred hhhhhhhcccccc-cCCCCCCCCCCCCCChHHHHHHHhhccccccCCcceeecCCChhhHHHHHHHHHHhhcccchhHHH
Q psy10178 326 ILDGLLHWAVCPA-AQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLR 404 (655)
Q Consensus 326 ILdGLLHWaVCps-A~aqDPfps~~~~lSPqrlALEaL~KLsI~d~NVdliLsTpPfsRle~L~~~LvrLL~~~~~~v~R 404 (655)
=++|||||+|--+ ..+.+..++.+..... + ..| ....|-.+++.+.+...=
T Consensus 4 ~l~~LLkWsI~ns~~~~~~~~~~~~~~~~~-~----------------------~~l-----~~~~L~~l~~~~sda~lM 55 (92)
T PF08609_consen 4 NLNGLLKWSIENSTTSASDAPPSAEQPDEE-R----------------------RQL-----DPEALDALFGGPSDAELM 55 (92)
T ss_pred HHHHHHHHHHHcCCCCccccccCcCCchhh-h----------------------hhc-----cHHHHHHHHcCCCHHHHH
Confidence 3789999999777 4445544443321100 0 111 334455555677777777
Q ss_pred HHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHHHHH
Q psy10178 405 EFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAE 443 (655)
Q Consensus 405 E~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE~~~ 443 (655)
+.|+.+|.+- +.... -+. .+...|-.+||..+
T Consensus 56 K~a~~vl~~~-~~t~e-dk~-----~Ald~le~LVE~ID 87 (92)
T PF08609_consen 56 KEAMEVLEDP-EVTLE-DKL-----IALDNLEELVENID 87 (92)
T ss_pred HHHHHHHHCC-CCCHH-HHH-----HHHHHHHHHHHccc
Confidence 7778877762 11111 232 33455666666543
No 83
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.18 E-value=1.3e+02 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=22.4
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHh
Q psy10178 387 LTYVLTRFLCKNEDQVLREFGVNLLHYLA 415 (655)
Q Consensus 387 L~~~LvrLL~~~~~~v~RE~AvvlL~nLa 415 (655)
.+..|+++|. ..+...++.|+.+|.|++
T Consensus 13 ~i~~L~~ll~-~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLK-SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 4567888876 556788999999999986
No 84
>KOG2312|consensus
Probab=22.00 E-value=39 Score=40.50 Aligned_cols=166 Identities=19% Similarity=0.142 Sum_probs=101.8
Q ss_pred HhhhhHHHHhhhhhccccccCchhhhhcCcchHHHHHHHHHhhhccccccccCCCCCCCCCccccccCCCCccchhhhHH
Q psy10178 213 NIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSLSPQAESEWWW 292 (655)
Q Consensus 213 ~la~RcicvSNIlR~LSFvPgNe~emakh~~lL~iLgrlLlLhheH~~r~~~~~~y~~ed~d~~~~~~~~~~~~~~~Www 292 (655)
+.-+|-.-+-.|+|+|||=+.|-...++.+-+...|-.+- .| .|=
T Consensus 5 s~~qr~~q~~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a-------------------------~~---------~ws- 49 (847)
T KOG2312|consen 5 STPQRQGQPPTVSRMLSFKRQNQQQHSPAPPPQQVLVMVA-------------------------QP---------QWS- 49 (847)
T ss_pred ccccccCCcceeeeeeccchhhhcccCCCCChhheeeeec-------------------------cc---------ccc-
Confidence 3445666778999999999999999998888665433221 11 221
Q ss_pred HHHHHhhhhhHHhhhhccccccccCCCCCCch-hhhhhhhhcccccccCCCCCCCCCCCCCChHHHHHHHhhccccccCC
Q psy10178 293 DYMENIRENVLVSLANISGHIDLDQYPEDISR-PILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNN 371 (655)
Q Consensus 293 d~l~~LReNaLVtLaNiagqLDLs~ypesI~~-PILdGLLHWaVCpsA~aqDPfps~~~~lSPqrlALEaL~KLsI~d~N 371 (655)
.|---||-+++|+|- --+. .+++ . +||- +|..-..-|=|--+ -++|+|.+||--+.|
T Consensus 50 ----~~~Vqal~s~~nlaq--pt~~---e~S~~~----~L~t-~t~Gi~S~drflim--------r~lEIl~~lcgrEgN 107 (847)
T KOG2312|consen 50 ----QMQVQALQSNANLAQ--PTSG---ESSLIK----QLLT-PTRGISSPDRFLIM--------RALEILPPLCGREGN 107 (847)
T ss_pred ----hhhhHhhhhhcccCC--cchh---hhhHHH----HHhh-hccCCCCCCceeEe--------eccccCcccccCCCC
Confidence 344457888899986 1111 1222 1 2222 22222222322211 278999999999999
Q ss_pred cceeecCCChhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcChhhHHHHhhccccHHHHHHHHH
Q psy10178 372 VDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIE 440 (655)
Q Consensus 372 VdliLsTpPfsRle~L~~~LvrLL~~~~~~v~RE~AvvlL~nLa~~d~~~~r~iA~qk~~I~~Ll~FLE 440 (655)
--+|---.- -..|...+.+|+. .+..+==+....||.|.+-.-..|-.|+.....|+.|+..+-
T Consensus 108 ~qvIc~~l~----~d~y~~iv~~ltl-~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~t 171 (847)
T KOG2312|consen 108 PQVICQVLS----NDAYGFIVQGLTL-ADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLST 171 (847)
T ss_pred ceeehhhhc----hHHHHHHHhccch-hHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccch
Confidence 887652111 2345555555533 344555667777888877666667779988888888887553
No 85
>KOG0608|consensus
Probab=21.09 E-value=4.1e+02 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=11.8
Q ss_pred cchhHHHHHHHHHHHHHhhc
Q psy10178 398 NEDQVLREFGVNLLHYLAAA 417 (655)
Q Consensus 398 ~~~~v~RE~AvvlL~nLa~~ 417 (655)
++.|.+.||.-+=|...++.
T Consensus 586 Rk~QLEkEM~kagLpd~~q~ 605 (1034)
T KOG0608|consen 586 RKKQLEKEMVKAGLPDIMQN 605 (1034)
T ss_pred HHHHHHHHHHHhcCCHHHHH
Confidence 44466677776666555544
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.90 E-value=2.5e+02 Score=34.42 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCcc
Q psy10178 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPS-------GPPTPGGPPPGPDMNVGPKV 67 (655)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppppp~pp~~~~~~~ppp-------ppppp~~ppPpp~m~~g~~p 67 (655)
+.++...++.+++++..+.+.......+++.+++.|.+.+...|++ ..++.+++.+.|...+...+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (824)
T PRK07764 398 APSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470 (824)
T ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCC
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.73 E-value=4.4e+02 Score=32.07 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=6.4
Q ss_pred hhhcCcchHHHHHHHH
Q psy10178 237 EFSKNSTFLRLLGRLI 252 (655)
Q Consensus 237 emakh~~lL~iLgrlL 252 (655)
+++.+..|...-|.-+
T Consensus 596 ~la~~sel~~~~~~~~ 611 (700)
T PRK12323 596 QLARQSELAGVEGDTV 611 (700)
T ss_pred HHHhhcchheecCcee
Confidence 3344444444333333
No 88
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=20.54 E-value=1.1e+02 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCChHHHHHHHhhccccccCC-cceeecCCC
Q psy10178 351 NLSPQRLALEALCKLCVTDNN-VDLVIATPP 380 (655)
Q Consensus 351 ~lSPqrlALEaL~KLsI~d~N-VdliLsTpP 380 (655)
.+||++||+.+++|++..+.+ +.++-+.-|
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n~ 42 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNNP 42 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCCC
Confidence 379999999999999999976 444444433
No 89
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=20.09 E-value=1.5e+02 Score=35.97 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHHHHHHH
Q psy10178 430 PCISLLVAFIEQAEQNAL 447 (655)
Q Consensus 430 ~~I~~Ll~FLE~~~~na~ 447 (655)
.-|.-||+||-+-..++.
T Consensus 464 sDVdAlIewIg~eq~~t~ 481 (866)
T COG4982 464 SDVDALIEWIGDEQTETV 481 (866)
T ss_pred hhHHHHHHHhcccccccc
Confidence 448899999987544433
Done!