RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10178
(655 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 4e-09
Identities = 79/473 (16%), Positives = 133/473 (28%), Gaps = 187/473 (39%)
Query: 323 SRPILDGLLH------WAVCP------AAQGQDPF----PSSSCNL-------SPQRLAL 359
+RP+ L H V P A+Q Q+ F P + +P L
Sbjct: 6 TRPLT--LSHGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 360 EALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADS 419
+ L + LV + + L LT F E+ L N +H LAA
Sbjct: 63 KFLGYV------SSLVEPSKVGQFDQVLNLCLTEF----ENCYLEG---NDIHALAAKLL 109
Query: 420 AMSRTIALQSPCISLLVAF----------IEQAEQNAL------GVANQHGI----GA-- 457
+ T +++ L+ + ++ +AL G A I G
Sbjct: 110 QENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 458 -----LRDNPDSMGTSL-DMLRRTARTLLHLSRHP-DNKPLF---------LQQEQR--- 498
LRD + + D+++ +A TL L R D + +F L+
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 499 ---------------LLAL----VMSQILDQQ-------------------VAAIISRVL 520
++ L V +++L A I+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET- 286
Query: 521 YQTRPDLYQNSEHA--------SREKRKI--------VTKKSVANQHGIGALRDNPDSM- 563
+ + + A R + + S+ N G+ P M
Sbjct: 287 -DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV------PSPML 339
Query: 564 ---GTSLDMLR---RVANQHG-------IGALRDNPDSM---G--TSLDMLRRTARTL-- 603
+ + ++ N H I +L + ++ G SL L T R
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 604 ---LHLSRHPDNKPLFLQQEQRLLALVM----------SQILDQQVAAIISRV 643
L SR P F +R L S +L I +
Sbjct: 399 PSGLDQSRIP-----F---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Score = 35.4 bits (81), Expect = 0.074
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 37/135 (27%)
Query: 526 DLYQNSEHASREKRKIVTKKSVANQH-----GIGAL---RDNPDSMGTSLDML------R 571
DLY+ S+ A + + + A+ H G L +NP +L + +
Sbjct: 1634 DLYKTSKAA----QDVWNR---ADNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGK 1682
Query: 572 RVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLS-RHPDNKPLFL-QQEQRLLALVMS 629
R+ + D + + + + R L Q Q L +M
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-LSATQFTQPAL-TLME 1740
Query: 630 QILDQQVAAIISRVL 644
AA L
Sbjct: 1741 ------KAAF--EDL 1747
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 8e-08
Identities = 43/323 (13%), Positives = 88/323 (27%), Gaps = 93/323 (28%)
Query: 357 LALEALCK----LCVTDNNV-----------DLVIATPPYARLERLTYVLTRFLCKNEDQ 401
+AL+ C C D + + V+ L++L Y + D
Sbjct: 166 VALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDH 219
Query: 402 VLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNAL-GVANQHGIGAL-- 458
N+ + + + + R + + LLV L V N A
Sbjct: 220 -----SSNIKLRIHSIQAELRRLLKSKPYENCLLV----------LLNVQNAKAWNAFNL 264
Query: 459 --------RDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQ 510
R + L T +L H S L + + LL +
Sbjct: 265 SCKILLTTRFK--QVTDFLSAATTTHISLDHHS-----MTLTPDEVKSLLLKYLDCRPQD 317
Query: 511 ----------QVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQ---------H 551
+ +II+ + + + N +H + +K + + S+
Sbjct: 318 LPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 552 GIGALRDNPDSMGTSLDML---------RRVANQ-HGIGALRDNPDSMGTSLDMLRRTAR 601
+ + L ++ V N+ H + P S+ +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI----- 431
Query: 602 TLLHLSRHPDNKPLFLQQEQRLL 624
L L +N+ + ++
Sbjct: 432 -YLELKVKLENEY---ALHRSIV 450
Score = 50.6 bits (120), Expect = 1e-06
Identities = 71/546 (13%), Positives = 138/546 (25%), Gaps = 177/546 (32%)
Query: 21 ASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVKCISYYDETAPS- 79
+ + E P + +++ NV +++ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRD-------RLYNDNQVFAKYNV-SRLQPYLKLRQALLEL 147
Query: 80 KPNTIVNSDVHVVKSEDKANGMT----TTKPEET--SVKIENNKEGES---TVKKENTEG 130
+P V + G+ T + S K++ + + +K N+
Sbjct: 148 RPAKNVL--ID---------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 131 EETVKTDN---TKEGEATVKLENGGEEPSATDKAEKETTEKPEVKFVPK---IIDPAGNA 184
+ T + ++ + E + K ++ N
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NV 253
Query: 185 KRRRLSEYEDESYC------RDEASLYPVSDSQDNIARRCIALSNILRNLTFVPGNELE- 237
+ + + S C R + V+D I+L + LT P
Sbjct: 254 QNAKAWNAFNLS-CKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTLT--PDEVKSL 306
Query: 238 FSK----------------NSTFLRLLGRLILAYHEHGLRAT--KTRNYDK--------- 270
K N L ++ I + K N DK
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 271 ---DDDDWTDCCSSLS--PQAESEW---------WWDYMENIRENVLVSLANIS------ 310
+ ++ LS P S W+D +++ V+ L S
Sbjct: 364 NVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 311 ---------GHIDL---------------DQY-------PEDISRPILDGLL------HW 333
+++L D Y +D+ P LD H
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 334 AVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNN-------VDLVIATPPY----- 381
+ F + LE K+ ++ + Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFR----FLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 382 ---ARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAF 438
+ ERL + FL K E+ ++ +LL IAL + ++ F
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLR------------IALMAEDEAI---F 580
Query: 439 IEQAEQ 444
E +Q
Sbjct: 581 EEAHKQ 586
Score = 50.6 bits (120), Expect = 1e-06
Identities = 61/404 (15%), Positives = 122/404 (30%), Gaps = 124/404 (30%)
Query: 312 HIDLD----QYP-EDISRPILDGLLHWAVCPAAQGQDPFPSS-SCNLSPQRLALEALCKL 365
H+D + QY +DI L + +D F + C ++ + K
Sbjct: 6 HMDFETGEHQYQYKDI-------LSVF--------EDAFVDNFDCK------DVQDMPKS 44
Query: 366 CVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLH----YLAAADSAM 421
++ +D +I + + + L K E+ V ++F +L +L +
Sbjct: 45 ILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTE 101
Query: 422 SRTIALQSPCISLLVAFIEQAE--QNA------LGVANQHGIGALRDNPDSMGTSLDMLR 473
R ++ + +IEQ + N V+ LR +L LR
Sbjct: 102 QRQPSMMT------RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-------QALLELR 148
Query: 474 RTARTLLH--------------------LSRHPDNKPLF---LQQEQRLLALVMSQILDQ 510
L+ + +F L+ +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNS----------PE 196
Query: 511 QVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGALRDNPDSMGTSLDML 570
V ++ ++LYQ P+ S+H+S K +I + ++ + + + + L +L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYEN----CLLVL 250
Query: 571 RRVANQHGIGAL----------RDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQE 620
V N A R + L T +L H S L +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATTTHISLDHHS-----MTLTPDEV 303
Query: 621 QRLLALVMSQILDQ----------QVAAIISRVLYQTRPDLYQN 654
+ LL + + +II+ + + + N
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDN 346
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 48.2 bits (115), Expect = 6e-06
Identities = 48/337 (14%), Positives = 96/337 (28%), Gaps = 71/337 (21%)
Query: 347 SSSCNLSPQRLALEALCKLCVTDNNVDLVI---ATPPYARLERLTYVLTRFLCKNEDQVL 403
++ ++ R L L + + P L + L + +
Sbjct: 69 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA----------LVKML-GSPVDSV 117
Query: 404 REFGVNLLHYLAAADSAMSRTIALQ---SPCISLL----VAFIEQA-----------EQN 445
+ + LH L + L ++LL V F+ +++
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
Query: 446 ALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALV 503
L + G AL + + T +L T+R L LS NKP ++ Q L +
Sbjct: 178 KLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236
Query: 504 MSQILDQQVAAIISRVLYQTRPDLYQNSEHASREKR---------KIVTKKSVANQ-HGI 553
+ + L S+ A++++ +++ +
Sbjct: 237 TDPSQRLVQNCLWT---------LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 287
Query: 554 GALR----DNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRH 609
G L +N + V GI AL G D+ L HL+
Sbjct: 288 GILSNLTCNNYKNK-------MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340
Query: 610 PDNKPLFLQQEQR------LLALVMSQILDQQVAAII 640
+ + ++ L+ + A +
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Score = 45.2 bits (107), Expect = 6e-05
Identities = 43/297 (14%), Positives = 81/297 (27%), Gaps = 82/297 (27%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFG 407
+ + A + +L + + ++ +P ++ + R + D
Sbjct: 27 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP------QMVSAIVRTMQNTNDVETARCT 80
Query: 408 VNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGT 467
LH L+ +S I LV + +P
Sbjct: 81 AGTLHNLSHHRE--GLLAIFKSGGIPALVKMLG--------------------SPVD--- 115
Query: 468 SLDMLRRTARTLLHLSRHPDNKPLFLQQE---QRLLALVMSQILDQQVAAIISRVLYQTR 524
+L TL +L H + + ++ Q+++AL+ + L
Sbjct: 116 --SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT--DCLQI-- 169
Query: 525 PDL-YQNSEHASREKRKIVTKKSVANQHGIGALRDNPDSMGTSLDMLRRVANQHGIGALR 583
L Y N E K + G AL ++++R
Sbjct: 170 --LAYGNQES----------KLIILASGGPQAL----------VNIMRT----------- 196
Query: 584 DNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQILDQQVAA 638
T +L T+R L LS NKP ++ Q L +
Sbjct: 197 ------YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 44.2 bits (104), Expect = 1e-04
Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 34/191 (17%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNN--VDLVIATPPYARLERLTYVLTRFLCKNEDQVLRE 405
+S ++ Q A ++ ++ +D+VI + L F+ +N+ ++L+
Sbjct: 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAG-------VVPRLVEFMRENQPEMLQL 149
Query: 406 FGVNLLHYLAAADSAMSRTIALQSPCISLLVAFI--------EQA-----------EQNA 446
L +A+ SA ++ + + + L + + EQA
Sbjct: 150 EAAWALTNIASGTSAQTKVVV-DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208
Query: 447 LGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQ---RLLALV 503
V + + + +S ++R TL +L R +P + Q L L+
Sbjct: 209 DYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 504 MSQILDQQVAA 514
S + V A
Sbjct: 267 YSMDTETLVDA 277
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 43.7 bits (103), Expect = 2e-04
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 29/177 (16%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNN--VDLVIATPPYARLERLTYVLTRFLCKNEDQVLRE 405
S + Q A + KL + N +D VI+TP FL + E+ L+
Sbjct: 30 FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVAR------FVEFLKRKENCTLQF 83
Query: 406 FGVNLLHYLAAADSAMSRTIALQSPCISLLVAFI-----EQAEQ--NALG---------- 448
+L +A+ +S +R + +Q+ + + + + + EQ ALG
Sbjct: 84 ESAWVLTNIASGNSLQTRIV-IQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 449 --VANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALV 503
V + + + L L M R L +L R P F + L L
Sbjct: 143 DYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLS 198
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 43.4 bits (102), Expect = 2e-04
Identities = 45/313 (14%), Positives = 80/313 (25%), Gaps = 64/313 (20%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFG 407
S S A+ L L + + + L+++ +L +
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG--LQKMVALL-----NKTNVKFLAIT 160
Query: 408 VNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGT 467
+ L LA + S+ I L S LV + T
Sbjct: 161 TDCLQILAYGNQE-SKLIILASGGPQALVNIMRT------------------------YT 195
Query: 468 SLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQILDQQVAAIISRVLYQTRP 525
+L T+R L LS NKP ++ Q L + + L
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL--WTLRN--- 250
Query: 526 DLYQNSEHASREKRKI------VTKKSVANQ-HGIGALR----DNPDSMGTSLDMLRRVA 574
L + + + + + G L +N + V
Sbjct: 251 -LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK-------MMVC 302
Query: 575 NQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQR------LLALVM 628
GI AL G D+ L HL+ + + ++ L+
Sbjct: 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 362
Query: 629 SQILDQQVAAIIS 641
+ A +
Sbjct: 363 PPSHWPLIKATVG 375
Score = 41.1 bits (96), Expect = 0.001
Identities = 45/270 (16%), Positives = 80/270 (29%), Gaps = 64/270 (23%)
Query: 390 VLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGV 449
LT+ L +EDQV+ ++H L+ +++ I +S +V ++
Sbjct: 18 ELTKLL-NDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQN-------- 67
Query: 450 ANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQI 507
++ R TA TL +LS H + + L+ ++ S +
Sbjct: 68 ----------------TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV 111
Query: 508 LDQQVAAIISRVLYQTRPDLYQNSEHASREKRKIV-------------TKKSVANQHGIG 554
AI + L+ H K +
Sbjct: 112 DSVLFYAITT---------LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162
Query: 555 ALR----DNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHP 610
L+ N +S + G AL + + T +L T+R L LS
Sbjct: 163 CLQILAYGNQESK-------LIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCS 214
Query: 611 DNKPLFLQQE--QRLLALVMSQILDQQVAA 638
NKP ++ Q L +
Sbjct: 215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244
Score = 29.1 bits (65), Expect = 4.9
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 590 GTSLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQILDQQVAAI 639
++ R TA TL +LS H + + L+ ++ S + AI
Sbjct: 68 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 41.6 bits (97), Expect = 9e-04
Identities = 45/268 (16%), Positives = 85/268 (31%), Gaps = 62/268 (23%)
Query: 391 LTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVA 450
LT+ L +EDQV+ ++H L+ +++ I +S +V ++
Sbjct: 155 LTKLL-NDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQN--------- 203
Query: 451 NQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQIL 508
++ R T+ TL +LS H + + L+ ++ S +
Sbjct: 204 ---------------TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD 248
Query: 509 DQQVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGAL-----RDNPDSM 563
AI + L+ H K + G+ + + N +
Sbjct: 249 SVLFHAITT---------LHNLLLHQEGAKMAV------RLAGGLQKMVALLNKTNVKFL 293
Query: 564 GTSLDMLR-----------RVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDN 612
+ D L+ + G AL + + T +L T+R L LS N
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSN 352
Query: 613 KPLFLQQE--QRLLALVMSQILDQQVAA 638
KP ++ Q L +
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNC 380
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 39.4 bits (91), Expect = 0.004
Identities = 54/356 (15%), Positives = 106/356 (29%), Gaps = 75/356 (21%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCK-NEDQVLREF 406
S N + AL LCKL D I +L RFL K +D+ +R +
Sbjct: 340 HSKNDGIRVRALVGLCKLGSYGGQ-DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW 398
Query: 407 GVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQN-------ALG----------- 448
+ L YL D+ + I L+ Q+
Sbjct: 399 AADGLAYL-TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457
Query: 449 ---------------------------------VANQHGIGALRDNPDSMGTSLDMLRRT 475
+AN+ AL + S +
Sbjct: 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL--AKTESHNSQELI 515
Query: 476 ARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQILDQQVAAI--ISRVLYQTRPDLYQNS 531
AR L + + + +Q+ + LL + + + A ++R+ P++ +
Sbjct: 516 ARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG 575
Query: 532 EHASREKRKIVT-----KKSVANQHGIGALRDNPDSMGTSLDMLRRVANQHGIGALRDNP 586
+ + R ++ ++ N + AL ++ + + +R+ + + +
Sbjct: 576 QRSLDVIRPLLNLLQQDCTALENFESLMALT----NLASMNESVRQRIIKEQGVSKIEY- 630
Query: 587 DSMGTSLDMLRRTA-RTLLHLSRHPDNKPLFLQQEQR---LLALVMSQILDQQVAA 638
+ L R A + L +L D +F R L L + + A
Sbjct: 631 -YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATAC 685
Score = 34.4 bits (78), Expect = 0.13
Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 15/185 (8%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFG 407
+L R A + LC L ++++ + + R++ L LC++ED+
Sbjct: 633 MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND--RVKFLAL-----LCEDEDEETATAC 685
Query: 408 VNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGT 467
L + + I + + +L I I + + + +
Sbjct: 686 AGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG-IVIILNMINAGEEIAK 744
Query: 468 SLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDL 527
L L L + PD+ + + + ++ + II R PD+
Sbjct: 745 KL-FETDIMELLSGLGQLPDDT---RAKAREVATQCLAAAERYR---IIERSDNAEIPDV 797
Query: 528 YQNSE 532
+ +
Sbjct: 798 FAENS 802
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 38.8 bits (89), Expect = 0.006
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 1/187 (0%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDM 61
A P A+ + G S + + E + G T P
Sbjct: 21 GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA-SETASPAS 79
Query: 62 NVGPKVKCISYYDETAPSKPNTIVNSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGES 121
N + P + + V ++ +++ K++ T KPE T+ E+ E+
Sbjct: 80 NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEA 139
Query: 122 TVKKENTEGEETVKTDNTKEGEATVKLENGGEEPSATDKAEKETTEKPEVKFVPKIIDPA 181
++ + + T+ T + + E + + V +
Sbjct: 140 NKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHL 199
Query: 182 GNAKRRR 188
N K +
Sbjct: 200 VNEKASK 206
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 38.0 bits (88), Expect = 0.010
Identities = 49/349 (14%), Positives = 105/349 (30%), Gaps = 64/349 (18%)
Query: 200 DEASLYPVSDSQDNIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHG 259
D+ S+ + AR + L N+ ++ + L LL I AY E
Sbjct: 83 DKDSVLLGNSRGSKEARARAS--AALHNIIHSQPDDKRGRREIRVLHLL-EQIRAYCETC 139
Query: 260 LRATKTRNYDKDDDDWTDCCSSLSPQAESEWWWDYMENIRENVLVSLANISGHIDLDQYP 319
+ + D + + +E+ + L +S +++
Sbjct: 140 WEWQEAH--EPGMDQDKNPMPA------------PVEHQICPAVCVLMKLSFD---EEHR 182
Query: 320 EDISR----PILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDLV 375
++ + LL D +++ +R A AL L D
Sbjct: 183 HAMNELGGLQAIAELLQVDCEMYGLTNDH-----YSITLRRYAGMALTNLTFGDVANKAT 237
Query: 376 IATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLL 435
+ + + L L K+E + L++ ++L L+ S+ + + L
Sbjct: 238 LCSMKGC-MRALVAQL-----KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291
Query: 436 VAFIEQAE-----QNALG----------------VANQHGIGALRD--NPDSMGTSLDML 472
+ + + ++ L A + L S +L ++
Sbjct: 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351
Query: 473 RRTARTLLHLS----RHPDNKPLFLQQE--QRLLALVMSQILDQQVAAI 515
L ++S + D++ + + Q LL + S L A
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400
Score = 32.2 bits (73), Expect = 0.49
Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 35/184 (19%)
Query: 456 GALRDNPDSMGTSLDML------------RRTARTLLHLSRHPDNK---------PLFLQ 494
G+ +GT ++M+ +RTLL +S D+ PL +Q
Sbjct: 18 GSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQ 77
Query: 495 QEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIG 554
LL + + + L+ +KR + + H +
Sbjct: 78 ----LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL---HLLE 130
Query: 555 ALRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKP 614
+R ++ H G +D + L+ LS +++
Sbjct: 131 QIRAYCET-------CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH 183
Query: 615 LFLQ 618
+
Sbjct: 184 AMNE 187
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 37.3 bits (86), Expect = 0.014
Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 32/180 (17%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNN--VDLVIATPPYARLERLTYVLTRFLCKNEDQVLRE 405
+S NL Q A +A KL + +D +I L FL K + ++
Sbjct: 67 NSNNLESQLQATQAARKLLSREKQPPIDNIIRAG-------LIPKFVSFLGKTDCSPIQF 119
Query: 406 FGVNLLHYLAAADSAMSRTIALQSPCISLLVA--------FIEQA-----------EQNA 446
L +A+ S ++ + I ++ EQA
Sbjct: 120 ESAWALTNIASGTSEQTKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178
Query: 447 LGVANQHGIGALRD---NPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALV 503
V I L PD + LR TL +L R+ + P EQ L LV
Sbjct: 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 36.2 bits (83), Expect = 0.019
Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
A PP P + GPPP G P PP G P P
Sbjct: 162 AGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG----PPMGIPPGRGTPMGMPP 217
Query: 61 MNVGP 65
+ P
Sbjct: 218 PGMRP 222
Score = 35.4 bits (81), Expect = 0.033
Identities = 12/58 (20%), Positives = 16/58 (27%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
P A+ + P + PP GPPPG +GP
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGP 201
Score = 35.0 bits (80), Expect = 0.056
Identities = 10/65 (15%), Positives = 12/65 (18%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
AA + P A GGP G + T
Sbjct: 108 RAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQ 167
Query: 61 MNVGP 65
G
Sbjct: 168 YPPGR 172
Score = 34.2 bits (78), Expect = 0.079
Identities = 15/65 (23%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
AA A + A PG PP + PP P G P P
Sbjct: 152 AAAAAATASIAGAPTQYPPG----RGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPP 207
Query: 61 MNVGP 65
P
Sbjct: 208 GRGTP 212
Score = 33.5 bits (76), Expect = 0.16
Identities = 9/58 (15%), Positives = 12/58 (20%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
A+ AS+ PP + P P P M
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
Score = 33.1 bits (75), Expect = 0.19
Identities = 10/51 (19%), Positives = 12/51 (23%)
Query: 15 GPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
G P V G + + PG P P M G
Sbjct: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
Score = 33.1 bits (75), Expect = 0.24
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
A+ GA G PP + G GPP PP GP M + P
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPP-GMMGPPPGMRPPMGPPMGIPP 207
Score = 31.5 bits (71), Expect = 0.57
Identities = 10/58 (17%), Positives = 12/58 (20%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
P G + GPP P G P +GP
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Score = 31.5 bits (71), Expect = 0.71
Identities = 15/65 (23%), Positives = 16/65 (24%), Gaps = 11/65 (16%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
T A + GGPPPP G P PG P P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP-----------MGRGAPPPGMMGPPPG 194
Query: 61 MNVGP 65
M
Sbjct: 195 MRPPM 199
Score = 30.0 bits (67), Expect = 2.2
Identities = 10/65 (15%), Positives = 12/65 (18%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
AA A + P P G PPG
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG 210
Query: 61 MNVGP 65
+G
Sbjct: 211 TPMGM 215
Score = 29.2 bits (65), Expect = 4.0
Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 5 QAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDM 61
+ PP P + G PP + P G P PG PP P M
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT----------PMGMPPPGMRPPPPGM 227
Score = 28.1 bits (62), Expect = 7.5
Identities = 6/58 (10%), Positives = 9/58 (15%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
V G A+ + + PP P
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.0 bits (82), Expect = 0.046
Identities = 8/65 (12%), Positives = 12/65 (18%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
M A + S+ + +N P P P
Sbjct: 45 MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104
Query: 61 MNVGP 65
M
Sbjct: 105 MGTPL 109
Score = 31.3 bits (70), Expect = 1.3
Identities = 8/56 (14%), Positives = 11/56 (19%)
Query: 4 TQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGP 59
Q PP A+ + G G P Q +
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Score = 30.9 bits (69), Expect = 1.5
Identities = 6/58 (10%), Positives = 7/58 (12%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGP 59
A Q P D G Q +
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Score = 30.6 bits (68), Expect = 1.9
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 5 QAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGP 59
QA+ + + P+ A P + G+ P P+ G
Sbjct: 11 QAQLQYGQNATPLQQPAQ--FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Score = 30.6 bits (68), Expect = 2.4
Identities = 6/59 (10%), Positives = 9/59 (15%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGP 59
A P S+ + P + L P
Sbjct: 34 DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Score = 30.2 bits (67), Expect = 2.5
Identities = 8/64 (12%), Positives = 15/64 (23%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDM 61
AA + + P Q Q ++ + P P+
Sbjct: 36 AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95
Query: 62 NVGP 65
+ P
Sbjct: 96 YMQP 99
Score = 30.2 bits (67), Expect = 2.7
Identities = 6/64 (9%), Positives = 12/64 (18%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDM 61
+ + +P G + Q + + P P
Sbjct: 39 GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Query: 62 NVGP 65
P
Sbjct: 99 PQVP 102
Score = 29.8 bits (66), Expect = 3.2
Identities = 8/65 (12%), Positives = 13/65 (20%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
A + P + P Q + + + S P D
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Query: 61 MNVGP 65
N
Sbjct: 93 PNAYM 97
Score = 29.4 bits (65), Expect = 5.2
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 2/66 (3%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPP--SGPPTPGGPPPGP 59
P + +D + + P N + P G P P
Sbjct: 58 QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Query: 60 DMNVGP 65
G
Sbjct: 118 APAYGQ 123
Score = 29.0 bits (64), Expect = 6.6
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
A T VDP A P P + + + P P G P
Sbjct: 75 QATTSMNDMHLHNVPLVDPNAY-----MQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Query: 61 MNVGP 65
N+ P
Sbjct: 130 QNMRP 134
Score = 29.0 bits (64), Expect = 6.7
Identities = 8/64 (12%), Positives = 17/64 (26%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDM 61
A Q + +A+ ++ ++ P Q + P P P
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124
Query: 62 NVGP 65
+
Sbjct: 125 SAAM 128
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 33.2 bits (75), Expect = 0.057
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
P + P PGA+ GG P P PP PP GG PP + P
Sbjct: 54 SKSPPGATPAPPGAAPPPAAGGSPSPP-----ADGGSPP--PPADGGSPPVDGGSPPP 104
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 35.2 bits (80), Expect = 0.066
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPG 58
P P ++G +PG G S + + + G P P G
Sbjct: 337 RPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWG 387
Score = 33.7 bits (76), Expect = 0.18
Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 3 ATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMN 62
P +SG +PG G P + G +G PG P PG
Sbjct: 280 NVNPGSYGPGSSGTWNPGRPEP-GSAGTWNPGRPEPG------SAGTWNPGRPEPGSAGT 332
Query: 63 VGP 65
P
Sbjct: 333 WNP 335
Score = 33.3 bits (75), Expect = 0.24
Identities = 9/63 (14%), Positives = 17/63 (26%)
Query: 3 ATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMN 62
+ G +PG++ G P P + ++ S P G +
Sbjct: 324 RPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSS 383
Query: 63 VGP 65
Sbjct: 384 PDW 386
Score = 33.3 bits (75), Expect = 0.24
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 3 ATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKP-PSGPPTPGGPPPGP 59
P P ++G +PG G P + P P + G G
Sbjct: 306 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGS 363
Score = 32.5 bits (73), Expect = 0.41
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 4 TQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNV 63
T P P G G +V+ GP + G + +G PG P PG
Sbjct: 263 TGLAPGSPRKPGTSSIG-NVNPGSYGPGSSGTWNPG-RPEPGSAGTWNPGRPEPGSAGTW 320
Query: 64 GP 65
P
Sbjct: 321 NP 322
Score = 32.5 bits (73), Expect = 0.42
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKP-PSGPPTPGGPPPGP 59
P P ++G +PG G P + P P + G PG
Sbjct: 292 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR 350
Score = 32.1 bits (72), Expect = 0.54
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 6 AEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
++ A G ++ G SG PG P PG P
Sbjct: 251 DGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGS-YGPGSSGTWNPGRPEPGSAGTWNP 309
Score = 30.6 bits (68), Expect = 1.6
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 5 QAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKP-PSGPPTPGGPPPGP 59
P + G V+PG+ G P + P P + G PG
Sbjct: 269 SPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR 324
Score = 30.6 bits (68), Expect = 1.9
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 4 TQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNV 63
+Q + E ++ M + + P +P P NV
Sbjct: 223 SQLQEAPLEWKALLEMQ-QTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNV 281
Query: 64 GP 65
P
Sbjct: 282 NP 283
Score = 30.2 bits (67), Expect = 2.0
Identities = 9/65 (13%), Positives = 12/65 (18%), Gaps = 9/65 (13%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
+ + G P P + G PG PG
Sbjct: 241 TKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGT---------SSIGNVNPGSYGPGSS 291
Query: 61 MNVGP 65
P
Sbjct: 292 GTWNP 296
>3gld_A Pilin; all-beta, cell adhesion, structural protein, isopeptid WALL,
fimbrium, isopeptide bond, membrane; 2.03A
{Streptococcus pyogenes serotype M1} PDB: 3b2m_A 3gle_A
Length = 295
Score = 33.2 bits (74), Expect = 0.21
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 85 VNSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGESTVKKENTEGEETVKTDNTKEGE 143
V D V + + K+ TT N G ST ++ +T+ + T+ N K E
Sbjct: 237 VGVDYVVTEDDYKSEKYTTNVEVSPQDGAVKNIAGNSTEQETSTDKDMTITFTNKKVFE 295
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 32.2 bits (73), Expect = 0.29
Identities = 13/60 (21%), Positives = 21/60 (35%)
Query: 6 AEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
++ +SG V G+ + G P + ++ P G P PGG G
Sbjct: 4 SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 32.1 bits (72), Expect = 0.37
Identities = 17/79 (21%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 8 PPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGG---PPPGPDMNVG 64
P G HGG + + G P GG P G G
Sbjct: 23 GSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQG 82
Query: 65 PKVKCISYYDETAPSKPNT 83
+ PSKP T
Sbjct: 83 GTHGQWNK-----PSKPKT 96
Score = 31.7 bits (71), Expect = 0.52
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 7 EPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPS----GPPTPGGPPPGPDMN 62
P+ G + G S G P + G P G P GG
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 63 VGP 65
G
Sbjct: 62 WGQ 64
Score = 29.8 bits (66), Expect = 2.4
Identities = 11/61 (18%), Positives = 14/61 (22%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDM 61
+ P G G GG P G+ + P GG G
Sbjct: 26 GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTH 85
Query: 62 N 62
Sbjct: 86 G 86
Score = 28.7 bits (63), Expect = 5.9
Identities = 8/56 (14%), Positives = 10/56 (17%)
Query: 4 TQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGP 59
++ P GG P G GG P
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQP 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.41
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 12/42 (28%)
Query: 399 EDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIE 440
E Q L++ +L Y A DSA P ++ + A +E
Sbjct: 18 EKQALKKLQASLKLY--ADDSA---------PALA-IKATME 47
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 32.8 bits (74), Expect = 0.43
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 19 PGASVDM-EHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVKCISYY 73
A + + P +S + P PTP P P P M GP +++
Sbjct: 552 KNADIGRCTYQKPREDESEAVPAEVIVQPQPVPTPAFPFPAPTMVHGP---AAAHH 604
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 32.5 bits (74), Expect = 0.44
Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 28/172 (16%)
Query: 348 SSCNLSPQRLALEALCKLCVTDN--NVDLVIATPPYARLERLTYVLTRFLCKNEDQVLRE 405
S + Q++ L L + + + L + + + +
Sbjct: 137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC-------ALEVKKESTLK 189
Query: 406 FGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSM 465
++ L L+A + I ++ LV + Q + G G LR
Sbjct: 190 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR------ 243
Query: 466 GTSLDMLRRTARTLLHLSRHPDNKPLFLQQE--QRLLALVMSQILDQQVAAI 515
++ + D++ + + Q LL + S L A
Sbjct: 244 -----------NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein
synthesis, native chemical ligation; 0.98A {Synthetic}
PDB: 3boi_A 3bog_A* 3bog_C*
Length = 81
Score = 30.0 bits (68), Expect = 0.46
Identities = 7/38 (18%), Positives = 7/38 (18%), Gaps = 1/38 (2%)
Query: 29 GPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPK 66
G G G GG P G
Sbjct: 42 GCAGGVGGAGGASGGTGVGGRGGKGG-SGTPKGADGAP 78
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B
Length = 1026
Score = 32.8 bits (75), Expect = 0.48
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 7 EPPVPEASGPV-DPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPP--PGPDMNV 63
E +G PG + GPP Q +Q GEK + P+GPP G P GP
Sbjct: 428 EKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQ-GEKGEQGPAGPPGFQGLPGPAGPAGEA 486
Query: 64 GPK 66
G
Sbjct: 487 GKP 489
Score = 31.2 bits (71), Expect = 1.3
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 6/51 (11%)
Query: 18 DPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPP--PGPDMNVGPK 66
PG G P G K + +G G P PG G
Sbjct: 77 VPGPQGARGFPGTPGLP----GFKGIRGHNGLDGLTGQPGAPGVKGEPGAP 123
Score = 29.3 bits (66), Expect = 5.1
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 7 EPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPP--PGPDMNVG 64
P A+GP G D G G PSG P GPP G + G
Sbjct: 683 PPGPVGAAGP--AGPRGDAGPTGMTGFPGAA-GRTGPPGPSGLTGPPGPPGAAGKEGIRG 739
Query: 65 PK 66
P+
Sbjct: 740 PR 741
Score = 28.5 bits (64), Expect = 9.9
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 16 PVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGP-----PPGPDMNVGPK 66
G GP G + + P+G G PPGP GP
Sbjct: 672 VGPQGPVGAAGPPGPVGAAGPA-GPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPP 726
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.8 bits (72), Expect = 0.77
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 3 ATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPG-PDM 61
++ A P A M+ P PP G P G PP G P
Sbjct: 359 SSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQ 418
Query: 62 NVGPKVKCISYYDETAPSKPNTIVN 86
P + + P + N
Sbjct: 419 GYPPPPQGAPPQGAPPAAPPQGVDN 443
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 30.7 bits (69), Expect = 0.86
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 551 HGIGALRDNPDSMGTSLDMLRRVANQHGIGALR------DNPDSMGTSLDMLRRTARTLL 604
HG + + L VA + G R D +G D+ R R L
Sbjct: 11 HGFES-----GPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLE 65
Query: 605 HLSRHPDNKPLFL 617
+ P+ L
Sbjct: 66 IARAATEKGPVVL 78
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 29.4 bits (66), Expect = 0.87
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATK 264
L +++ L +L+F + FL L+G L +A H+ +++T+
Sbjct: 57 VLDRMMKKLDLDSDGQLDFQE---FLNLIGGLAIACHDSFIKSTQ 98
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus
thermophilus} PDB: 2yz5_A 2z4g_A
Length = 267
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 267 NYDKDDDDWTDCCSSLSPQAESEWWWDYMENIRENVLVSLANISGHIDL-----DQYPED 321
+ D D + + + E + Y + + + L + GH+DL + PE+
Sbjct: 112 AWPLDHPDHQEEYAWRDLK---EVFRAYFQEVEKAARSGLFHAIGHLDLPKKFGHRLPEE 168
Query: 322 ISRPILDGLLHWAV 335
+ + L
Sbjct: 169 ALLELAEPALRAVA 182
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 31.0 bits (70), Expect = 1.3
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 8/90 (8%)
Query: 6 AEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
P + P P ++ + + S GP G
Sbjct: 27 GGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGP--LAGG 84
Query: 66 KVKCISYYDETAPSKPNTIVNSDVHVVKSE 95
++ YD + + +D+ K E
Sbjct: 85 VTTFVALYDYESRT------ETDLSFKKGE 108
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 31.2 bits (70), Expect = 1.5
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 103 TTKPEETSVKIENNKEGESTVKKENTEG-----EETVKTDNTKEGEATVKLENGGEE--- 154
T PE + + ++ T+ + E T ++ T + +
Sbjct: 824 NTTPEVATSATFSTEDRRLTLASKPKTSQPVYRERIAYTYMDEDLPTTEYISPNEDGTFT 883
Query: 155 -PSATDKAEKETTEKPEVKFVPKIIDPAGNAKRRRLSE 191
P + E T F + D AGN +++
Sbjct: 884 LPEEAETMEGATVPLKMSDFTYVVEDMAGNITYTPVTK 921
>3tip_A Surface protein G; single-layer beta sheet, biofilm formation,
structu protein; 1.70A {Staphylococcus aureus subsp}
Length = 132
Score = 29.7 bits (66), Expect = 1.6
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 79 SKPNTIVNSDVHVVKSEDKANGMTTTKPEE---TSVKIENN--KEGESTVKKENTEGEET 133
+ +V V V G + + EE + N G V +E +GE+T
Sbjct: 34 PETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKT 93
Query: 134 VKTDNTKEGEATVKLENGGEEPSATDKAEKETTEKPEVKFVPKII 178
+ T G + ++++E T+ P + ++
Sbjct: 94 ITT------PTLKNPLTGEII--SKGESKEEITKDP----INELT 126
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 30.3 bits (68), Expect = 2.2
Identities = 24/126 (19%), Positives = 36/126 (28%), Gaps = 1/126 (0%)
Query: 26 EHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVKCISYYDETAPSKPNTIV 85
+ P P + GP TP P G PK K P +P
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 86 NSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGESTVKKENTEGEETVKTD-NTKEGEA 144
+ + + + + + + G + V+ E T N EG A
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIA 120
Query: 145 TVKLEN 150
V EN
Sbjct: 121 VVFKEN 126
Score = 29.9 bits (67), Expect = 3.2
Identities = 19/122 (15%), Positives = 30/122 (24%), Gaps = 9/122 (7%)
Query: 46 PSGPPTPGGPPPGPDMNVGPKVKCISYYDETAPSKPNTIVNSDVHVVKSEDKANGMTTTK 105
P+ P TPG N GP P N + K
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKN-------KKPKNPTPPRPA 57
Query: 106 PEETSVKIENNKEGESTVKKENTEGEETVKTDNTKEGEATVKLENGGEEPSATDKAEKET 165
+ +V + E + + G V+ E P+ + +
Sbjct: 58 GDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG--QNY 115
Query: 166 TE 167
TE
Sbjct: 116 TE 117
Score = 29.2 bits (65), Expect = 5.1
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 15/128 (11%)
Query: 6 AEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
A P P G + + P PP P+G P P +
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGA-------APTGDPKPKKNKKPKNPTPPR 55
Query: 66 KVKCISYYDETAPSKPNTIVNSDVHVVKSEDKA--NGMTTTKPEETSVKIENNKEGESTV 123
D + + + + +K+E+ + T V+ E + +
Sbjct: 56 -----PAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRP 110
Query: 124 KKEN-TEG 130
+ +N TEG
Sbjct: 111 EGQNYTEG 118
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 29.7 bits (66), Expect = 2.7
Identities = 9/57 (15%), Positives = 10/57 (17%)
Query: 9 PVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGP 65
G GG Q G + P P P P
Sbjct: 159 SRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPP 215
Score = 28.9 bits (64), Expect = 4.1
Identities = 14/56 (25%), Positives = 16/56 (28%)
Query: 3 ATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPG 58
TQ+ E G+S G GP PGGPPP
Sbjct: 162 TTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPP 217
Score = 28.5 bits (63), Expect = 6.6
Identities = 8/63 (12%), Positives = 10/63 (15%)
Query: 3 ATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMN 62
+ E + G PP PG P G
Sbjct: 147 VNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP 206
Query: 63 VGP 65
Sbjct: 207 GPA 209
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 29.9 bits (66), Expect = 2.7
Identities = 8/65 (12%), Positives = 12/65 (18%), Gaps = 1/65 (1%)
Query: 2 AATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPG-GPPPGPD 60
P S P + + E + P P
Sbjct: 251 RPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKS 310
Query: 61 MNVGP 65
+N P
Sbjct: 311 LNKAP 315
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 29.4 bits (65), Expect = 3.0
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 8/68 (11%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
+ QA P P P+ +K P PG
Sbjct: 52 LVIGQATRPQNPRPRPPPRQK--------KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Query: 61 MNVGPKVK 68
+ K++
Sbjct: 104 QRMALKLE 111
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
Length = 1054
Score = 30.1 bits (68), Expect = 3.1
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 18 DPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPP--PGPDMNVGPK 66
+PG + + GPP G +G P GP G GP
Sbjct: 429 EPGKAGERGVPGPPGAV----GPAGKDGEAGAQGPPGPAGPAGERGEQGPA 475
Score = 30.1 bits (68), Expect = 3.4
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 7 EPPVPEASGPVDPGASVDMEHGGPPPPQSLQ--NGEKNNKPPSGPPTPGGPP--PGPDMN 62
E VP G G + G P GE+ + P+G P G P GP
Sbjct: 435 ERGVPGPPGA--VGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE 492
Query: 63 VGPK 66
G
Sbjct: 493 AGKP 496
Score = 29.7 bits (67), Expect = 3.8
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 16 PVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGP-----PPGPDMNVGPK 66
P GA D GP P G + G P P GP PPG D G K
Sbjct: 610 PGPAGAPGDKGEAGPSGPAGPT-GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 664
Score = 29.7 bits (67), Expect = 4.1
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 29 GPPPPQSLQNGEKNNKPPSGPPTPGGPP--PGPDMNVGPK 66
G G P+GP P G P G GP+
Sbjct: 161 GNDGAA----GAAGPPGPTGPTGPPGFPGAVGAKGEAGPE 196
Score = 28.5 bits (64), Expect = 8.1
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 7 EPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPP--PGPDMNVG 64
P G GA + G + Q G + P GP GP PG D G
Sbjct: 177 PTGPPGFPGA--VGAKGEAGPEGARGSEGPQ-GVRGEPGPPGPAGAAGPAGNPGADGQPG 233
Query: 65 PK 66
K
Sbjct: 234 AK 235
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 29.7 bits (66), Expect = 3.1
Identities = 10/57 (17%), Positives = 13/57 (22%), Gaps = 3/57 (5%)
Query: 4 TQAEPPVPEASGP---VDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPP 57
+ P P V AS + PP P +G P
Sbjct: 12 SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Score = 28.2 bits (62), Expect = 9.8
Identities = 10/83 (12%), Positives = 16/83 (19%)
Query: 1 MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPD 60
M ++ P + L P P P P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Query: 61 MNVGPKVKCISYYDETAPSKPNT 83
+ P+ P T
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGT 83
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA
complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP:
c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A*
2pyj_A* 2pyl_A* 2pzs_A*
Length = 575
Score = 29.9 bits (66), Expect = 3.2
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 63 VGPKVKCISYYDETAPSKPNTIVNSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGEST 122
+ K Y + K D +K K GMT +E + EN K G S
Sbjct: 495 LRQKTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTF--ENFKVGFSR 552
Query: 123 VKK 125
K
Sbjct: 553 KMK 555
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 28.2 bits (63), Expect = 3.2
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTR 266
+L +++L +EL+F++ + RL+G L + + +
Sbjct: 63 SLDEKMKSLDVNQDSELKFNE---YWRLIGELAKEIRKKKDLKIRKK 106
>3tiq_A Surface protein G; single-layer beta sheet, biofilm formation,
structu protein; 1.87A {Staphylococcus aureus subsp}
Length = 214
Score = 29.2 bits (64), Expect = 3.3
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 102 TTTKPEETSVKIENN-KEGESTVKKENTEGEETVKTDNTKEGEATVKLENGGEEPSATDK 160
P + K + G V +E +GE+T+ T K V + G + T
Sbjct: 15 VEEIPFKKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGVIISKGEPKEEITKD 74
Query: 161 AEKETTEK 168
E TE
Sbjct: 75 PINELTEY 82
Score = 28.0 bits (61), Expect = 8.6
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 21/132 (15%)
Query: 63 VGPKVKCISYYDETAPSKPNTIVNSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGEST 122
GP+ + DE P P ++ G P ++ K K
Sbjct: 82 YGPETIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIV 141
Query: 123 VKKENTEGEETVKTDNT-----------KEGEATV-----KLENGGEEPSATDKAEKETT 166
K+E +E + ++GE T+ K GE S + E+ T
Sbjct: 142 EKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITK 201
Query: 167 EKPEVKFVPKII 178
+ + ++
Sbjct: 202 DP-----INELT 208
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 29.7 bits (66), Expect = 3.3
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 356 RLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLA 415
AL+ L + D ++ + + E L T K ++ V LL L
Sbjct: 80 GYALDTLYNIISNDEEEEVEENSTR--QSEDLGSQFTEIFIKQQENV-----TLLLSLLE 132
Query: 416 AADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRT 475
D R ++ ++ L+ + Q + + + G+ L D + S +++R
Sbjct: 133 EFDF-HVRWPGVK--LLTSLLKQLGPQVQQII-LVSPMGVSRL---MDLLADSREVIRND 185
Query: 476 ARTLL 480
LL
Sbjct: 186 GVLLL 190
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.8 bits (62), Expect = 3.5
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
+ ++ L E +F + F+ + + A HE
Sbjct: 53 VVDKVMETLDSNGDGECDFQE---FMAFVAMITTACHEF 88
>1nay_A CCP4, collagen-like peptide; collagen assembly, structural
protein; 2.60A {Synthetic} SCOP: k.3.1.1
Length = 56
Score = 26.6 bits (58), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 29 GPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPK 66
GPP P G P GPP P GPP + P+
Sbjct: 1 GPPGPPGPP-GPPGPPGPPGPPGPPGPPGSGYIPEAPR 37
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.9 bits (62), Expect = 4.0
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
+ + L E++F + ++R L L L HE+
Sbjct: 54 DYNKFMSVLDTNKDCEVDFVE---YVRSLACLCLYCHEY 89
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 28.7 bits (65), Expect = 4.1
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 25/98 (25%)
Query: 556 LRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMG--TSLDMLRRTARTLLHLSRHPDNK 613
+ + + + ++A++ LR +G LD+ R ARTLL L + PD
Sbjct: 104 SQQDSE---ILYTLGSQMADR-----LRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAM 155
Query: 614 PLFLQQEQRLLALVMSQILDQQVAAII-------SRVL 644
+ + +++ Q++ I+ RVL
Sbjct: 156 T-----HPDGMQIKITR---QEIGRIVGCSREMVGRVL 185
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 29.4 bits (65), Expect = 4.3
Identities = 32/299 (10%), Positives = 76/299 (25%), Gaps = 42/299 (14%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFG 407
SS + Q + + C D + + +L + ++ L ++ +Q +++
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQDESAKQQV-----YQLGGICKLVD--LLRSPNQNVQQAA 64
Query: 408 VNLLHYLAAADSAMSRTIALQSPCISLLVAFI-----EQAEQNALG-------------V 449
L L + ++ + I V+ + + ++ G
Sbjct: 65 AGALRNLVFRSTT-NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 450 ANQHGIGALRD--------------NPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQ 495
+ L D N ++ L +LS +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 496 EQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGA 555
+ +L+ + + + L+ S E ++ N
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY-RQLEYNARNAYT 242
Query: 556 LRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLR-RTARTLLHLSRHPDNK 613
+ + D + + NP G RT L+ S+
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Score = 29.0 bits (64), Expect = 4.8
Identities = 12/74 (16%), Positives = 22/74 (29%)
Query: 298 IRENVLVSLANISGHIDLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRL 357
I++ + L N+S +L + + P+L + G +
Sbjct: 103 IQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162
Query: 358 ALEALCKLCVTDNN 371
A L L D
Sbjct: 163 ATGCLRNLSSADAG 176
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 27.5 bits (61), Expect = 4.5
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATK 264
A+ +L++L +++FS+ F+ + + A H++ +A
Sbjct: 53 AVDKLLKDLDANGDAQVDFSE---FIVFVAAITSACHKYFEKAGL 94
>1bkv_A T3-785; collagen, hydroxyproline, hydrogen bonding; 2.00A {}
SCOP: k.3.1.1
Length = 30
Score = 25.6 bits (56), Expect = 5.2
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 29 GPPPPQSLQNGEKNNKPPSGPPTPGGPP 56
GPP P + G + P GPP P GPP
Sbjct: 3 GPPGPPGI-TGARGLAGPPGPPGPPGPP 29
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 29.0 bits (65), Expect = 5.2
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 358 ALEALCKLCVTDNNVDLVIATPPY 381
+LE L + ++ LV+ +PP+
Sbjct: 22 SLELLESF--PEESISLVMTSPPF 43
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 27.1 bits (60), Expect = 5.5
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
+ I + L +++F + F+ L+ + A H H
Sbjct: 56 VIDEIFQGLDANQDEQVDFQE---FISLVAIALKAAHYH 91
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 29.1 bits (64), Expect = 5.7
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 93 KSEDKANGMTTTKPEETSVKIENNKEGESTVKKENTEGEETVKTDNTKEGEATVKLENGG 152
K+E++ + KP E K + + K T +TV+ ++G T++ E G
Sbjct: 51 KTEEELLALEKEKPAEEKPKEDKPAAAKPETPKTVTPEWQTVE-KKEQQGTVTIREEKGV 109
Query: 153 EEPSATDKAEKETTEKPEV 171
+ A+ + KP +
Sbjct: 110 RYNQLSSTAQNDNAGKPAL 128
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 28.4 bits (64), Expect = 6.3
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 25/98 (25%)
Query: 556 LRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMG--TSLDMLRRTARTLLHLSRHPDNK 613
++ NPD + + ++A + L+ + +G LD+ R A+TLL+L++ PD
Sbjct: 107 IQVNPD---ILMRLSAQMARR-----LQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAM 158
Query: 614 PLFLQQEQRLLALVMSQILDQQVAAII-------SRVL 644
+ + +++ Q++ I+ R+L
Sbjct: 159 T-----HPDGMQIKITR---QEIGQIVGCSRETVGRIL 188
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR
LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB:
2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 28.0 bits (61), Expect = 6.4
Identities = 11/46 (23%), Positives = 13/46 (28%)
Query: 23 VDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVK 68
V P S ++ P G PP G KVK
Sbjct: 43 VRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGSKVK 88
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 28.4 bits (64), Expect = 6.5
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 24/97 (24%)
Query: 556 LRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGT-SLDMLRRTARTLLHLSRHPDNKP 614
LR +P ++ +A + + D + + +L R
Sbjct: 116 LRRHPR---VLWNLAEMLARR-----VTFLNDELIAFGQNTEAALTHVFANLYRQRLA-- 165
Query: 615 LFLQQEQRLLALVMSQILDQQVAAII-------SRVL 644
+ L + Q + A SRVL
Sbjct: 166 ---AGVPQPEVLPLGT---QDIMARTSSSRETVSRVL 196
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.0 bits (60), Expect = 7.0
Identities = 7/39 (17%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
++ +++++L E++F + + L L +AY++
Sbjct: 51 SIDDLMKSLDKNSDQEIDFKE---YSVFLTMLCMAYNDF 86
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.1 bits (60), Expect = 7.2
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
+ I+ +L NE++F++ F+ L+ L +A ++
Sbjct: 54 LVEKIMNDLDSNKDNEVDFNE---FVVLVAALTVACNDF 89
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION,
membrane protein; HET: ATP; 2.10A {Rattus norvegicus}
SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 28.7 bits (63), Expect = 7.3
Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 8/81 (9%)
Query: 14 SGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVKCISYY 73
+ G D++ PPPP S TPG +
Sbjct: 15 MANLPNGYMTDLQRPQPPPPPP--------SAASPGATPGSAAASAERASTAAPVASPAA 66
Query: 74 DETAPSKPNTIVNSDVHVVKS 94
S +S + VK
Sbjct: 67 PSPGSSGGGGFFSSLSNAVKQ 87
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 28.6 bits (64), Expect = 7.4
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 19/69 (27%)
Query: 360 EALCKLCVTDNNVDLVIATPPYARLERL--------TYVLTRFLCK-NEDQVLREFGVNL 410
EAL L N I +P L L T + RF + LRE NL
Sbjct: 209 EALFDLAHRKWN----IESPTVDDLNLLITEALAGITASM-RFSGFLTVEISLRELLTNL 263
Query: 411 -----LHYL 414
LH+L
Sbjct: 264 VPQPSLHFL 272
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 28.4 bits (63), Expect = 7.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 293 DYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLLH 332
D + N+R NV SL I +D ++ +PIL+ L
Sbjct: 530 DPVANVRFNVAKSLQKIGPILDNSTLQSEV-KPILEKLTQ 568
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 27.2 bits (60), Expect = 8.3
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
+ +I+ +L +L F + F+ L+ RL A HE
Sbjct: 57 VIEHIMEDLDTNADKQLSFEE---FIMLMARLTWASHEK 92
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 28.1 bits (63), Expect = 9.0
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 358 ALEALCKLCVTDNNVDLVIATPPY 381
+ L ++ + +V L + PPY
Sbjct: 12 CFDFLDQV--ENKSVQLAVIDPPY 33
>3zue_A VP1, capsid structural protein VP60; CAGE design, molecular
switch, protein engineering, structural polymorphism;
10.30A {Rabbit hemorrhagic disease virus}
Length = 579
Score = 28.4 bits (62), Expect = 9.1
Identities = 9/47 (19%), Positives = 10/47 (21%), Gaps = 3/47 (6%)
Query: 25 MEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPP---PGPDMNVGPKVK 68
ME PQ G G T G P +
Sbjct: 1 MEGKARTAPQGEAAGTATTASVPGTTTDGLDPGVVATTSVVTAENSS 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,896,957
Number of extensions: 613852
Number of successful extensions: 1758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1531
Number of HSP's successfully gapped: 171
Length of query: 655
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 555
Effective length of database: 3,909,693
Effective search space: 2169879615
Effective search space used: 2169879615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.6 bits)