RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10178
(655 letters)
>d1sdoa_ c.52.1.21 (A:) Restriction endonuclease BstyI {Geobacillus
stearothermophilus [TaxId: 1422]}
Length = 203
Score = 30.7 bits (69), Expect = 0.38
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 13/143 (9%)
Query: 130 GEETVKTDNTKEGEATVKLENGGEEPSATDKAEKETTEKPEVKFVPKII----DPAGNAK 185
G E ++ E ++ + + K KE T++ ++ + P + AK
Sbjct: 12 GLEYIQVHLPHIWEEIQEIIVSIDAEACRTKESKEKTKQGQILYSPVALNEAFKEKLEAK 71
Query: 186 -----RRRLSEYEDESYCRDEASLYPVSDSQDNIARRCIALSNILRNLTFVPGN---ELE 237
R D R+ SL P + + I FV E++
Sbjct: 72 GWKESRTNYYVTADPKLIRETLSLEP-EEQKKVIEAAGKEALKSYNQTDFVKDRVAIEVQ 130
Query: 238 FSKNSTFLRLLGRLILAYHEHGL 260
F K S L +A++
Sbjct: 131 FGKYSFVAYDLFVKHMAFYVSDK 153
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 30.4 bits (67), Expect = 0.67
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 358 ALEALCKLCVTDNNVDLVIATPPY 381
L+ L KL D++V L+I PPY
Sbjct: 12 CLDTLAKL--PDDSVQLIICDPPY 33
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 30.2 bits (66), Expect = 0.78
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 348 SSCNLSPQRLALEALCKLCVTDNN--VDLVIATPPYARLERLTYVLTRFLCKNEDQVLRE 405
+S NL Q A +A KL + +D +I L FL K + ++
Sbjct: 23 NSNNLESQLQATQAARKLLSREKQPPIDNIIRA-------GLIPKFVSFLGKTDCSPIQF 75
Query: 406 FGVNLLHYLAAADSAMSRTIA 426
L +A+ S ++ +
Sbjct: 76 ESAWALTNIASGTSEQTKAVV 96
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 29.3 bits (64), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 358 ALEALCKLCVTDNNVDLVIATPPY 381
+LE L + ++ LV+ +PP+
Sbjct: 20 SLELLESF--PEESISLVMTSPPF 41
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 29.2 bits (64), Expect = 1.4
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 358 ALEALCKLCVTDNNVDLVIATPPY 381
+ L ++ + +V L + PPY
Sbjct: 12 CFDFLDQV--ENKSVQLAVIDPPY 33
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
calgranulin C, s100a12 [TaxId: 9606]}
Length = 87
Score = 27.4 bits (61), Expect = 1.5
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH 258
+ I + L +++F + F+ L+ + A H H
Sbjct: 52 VIDEIFQGLDANQDEQVDFQE---FISLVAIALKAAHYH 87
>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa),
calgizzarin s100c (s100a11) [TaxId: 9823]}
Length = 95
Score = 27.0 bits (60), Expect = 2.4
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 220 ALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATK 264
L +++ L +L+F + FL L+G L +A H+ +++T+
Sbjct: 53 VLDRMMKKLDLDSDGQLDFQE---FLNLIGGLAIACHDSFIKSTQ 94
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 28.2 bits (62), Expect = 3.6
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 20/128 (15%)
Query: 345 FPSSSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLR 404
F + + + L+ + +L + N+ V+A E Y D
Sbjct: 322 FVKYNDPIYVKLEKLDIMIRLA-SQANIAQVLA-------ELKEYA------TEVDVDFV 367
Query: 405 EFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDS 464
V + A + C+S L+ I+ + A R P+
Sbjct: 368 RKAVRAIGRCAIKVEQSAER------CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK 421
Query: 465 MGTSLDML 472
+ + L
Sbjct: 422 YESIIATL 429
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG
{Klebsiella pneumoniae [TaxId: 573]}
Length = 108
Score = 26.8 bits (59), Expect = 3.7
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 33 PQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPK 66
P + Q + PS P P G + P+
Sbjct: 33 PTTEQGLQALVSAPSAEPHARNYPEGGYIRRLPQ 66
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 179
Score = 27.1 bits (59), Expect = 5.2
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 230 FVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSLSPQ--AE 287
F+PG L + + + I + E G TR++ ++ P+ +
Sbjct: 14 FMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPENHISFRERGGPWPRHCVQ 73
Query: 288 SEWWWDYMENIREN 301
+ +++ ++ E+
Sbjct: 74 NTPGAEFVVDLPED 87
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 27.2 bits (60), Expect = 5.7
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 453 HGIGALRDNPDSMGTSLDMLRR----TARTLLHLSRHP--DNKPLFLQQEQRLLALVMSQ 506
HG+G NP SMG M+ + L + + D + F + V
Sbjct: 12 HGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQI 71
Query: 507 I 507
+
Sbjct: 72 L 72
Score = 27.2 bits (60), Expect = 5.7
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 577 HGIGALRDNPDSMGTSLDMLRR----TARTLLHLSRHP--DNKPLFLQQEQRLLALVMSQ 630
HG+G NP SMG M+ + L + + D + F + V
Sbjct: 12 HGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQI 71
Query: 631 I 631
+
Sbjct: 72 L 72
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces
lavendulae [TaxId: 1914]}
Length = 237
Score = 27.2 bits (59), Expect = 5.7
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 272 DDDWTDCCSSLSPQAESEWWWDYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLL 331
D+ L A + + + + +AN + L + D+ R GL
Sbjct: 160 ADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRT---GLA 216
Query: 332 HWAVCPAAQGQDPFP 346
+ V P+ + P
Sbjct: 217 VYGVSPSPELGTPAQ 231
>d1adta1 a.54.1.1 (A:176-265) Domain of early E2A DNA-binding
protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Length = 90
Score = 25.9 bits (57), Expect = 5.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 236 LEFSKNSTFLRLLGRLILAY 255
L F+ N TF+ ++GR + AY
Sbjct: 57 LTFTSNKTFVTMMGRFLQAY 76
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 27.2 bits (60), Expect = 6.2
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 204 LYPVSDSQDNIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAY--HEHGLR 261
++ S ++ I + + + V N ++F +N G LI + H+ L+
Sbjct: 154 VFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGALK 213
Query: 262 ATKTRNYDKDDDD 274
T + KD+ +
Sbjct: 214 NTDYFSQLKDNSN 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,382,655
Number of extensions: 110727
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 18
Length of query: 655
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 564
Effective length of database: 1,158,166
Effective search space: 653205624
Effective search space used: 653205624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.9 bits)