BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10181
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 74 DLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQL 133
+++Y + +L +ES+ WL+ I+ I+ + + D ++ +SV++ DGWD T QL
Sbjct: 371 EIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQL 430
Query: 134 SSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSPASG-FTPTFLQFLDAV 192
+SLA L LD YYRT+ GF VLVEKEW++FGHRF R + A +P FLQF+D V
Sbjct: 431 TSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCV 490
Query: 193 HQL 195
Q+
Sbjct: 491 WQM 493
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 74 DLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQL 133
+++Y + +L +ES+ WL+ I+ I+ + + D ++ +SV++ DGWD T QL
Sbjct: 299 EIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQL 358
Query: 134 SSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSPASG-FTPTFLQFLDAV 192
+SLA L LD YYRT+ GF VLVEKEW++FGHRF R + A +P FLQF+D V
Sbjct: 359 TSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCV 418
Query: 193 HQL 195
Q+
Sbjct: 419 WQM 421
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 62 IQNIMQLSGAVVDLLYL--PKRLST--FLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGS 117
I+NI + ++ LL + K LS F +ESS WL+ I+ +M + + + V+ +
Sbjct: 271 IENIHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSGWLRHIKAVMDAAVFLAKAITVENA 330
Query: 118 SVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSP 177
SV++ DGWD T Q+ SL L LD YYRT++GF VL+EK+WI+FGH+FS R P
Sbjct: 331 SVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDP 390
Query: 178 ASGFTPTFLQFLDAVHQL 195
+P F QFL+ V L
Sbjct: 391 KE-VSPVFTQFLECVWHL 407
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 70 GAVVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDI 129
G DL LP+ LS K + S++ + L AV++L D + ++ L+ D
Sbjct: 18 GVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGVNACILPLLQIDRDS 77
Query: 130 TCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSPASG 180
+ C D YYR + +EK + + + NVH+ A G
Sbjct: 78 GNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQC-VKLLVENGANVHARACG 127
>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
pdb|3OQC|B Chain B, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
Length = 481
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 53 IESSQWLQQIQNIM---QLSGAVVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVV 109
+ S QW+ I+ M QL G +L++ + + E + Q + + + G V+
Sbjct: 357 VGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVL 416
Query: 110 DLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAF 162
L W+ T + L LDP+Y E +V++EK W +
Sbjct: 417 ---------AHTILGVAWNETT--GQIKFLILDPHYTGAEDLQVMLEKGWCGW 458
>pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase
pdb|1JPM|B Chain B, L-ala-d/l-glu Epimerase
pdb|1JPM|C Chain C, L-ala-d/l-glu Epimerase
pdb|1JPM|D Chain D, L-ala-d/l-glu Epimerase
pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
Length = 366
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 9/43 (20%)
Query: 117 SSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEW 159
++V + L DGW AQ+C P Y+ L G+R +E ++
Sbjct: 101 AAVEMALYDGW---------AQMCGLPLYQMLGGYRDTLETDY 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,602,781
Number of Sequences: 62578
Number of extensions: 200216
Number of successful extensions: 318
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 9
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)