Query psy10181
Match_columns 198
No_of_seqs 155 out of 509
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:57:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4471|consensus 100.0 3.6E-65 7.9E-70 481.7 15.2 156 2-197 299-456 (717)
2 KOG1089|consensus 100.0 3.2E-62 6.9E-67 462.1 13.7 157 2-197 268-427 (573)
3 PF06602 Myotub-related: Myotu 100.0 8.7E-61 1.9E-65 432.6 15.9 158 2-197 154-314 (353)
4 KOG1090|consensus 100.0 2E-41 4.3E-46 332.9 12.0 149 5-197 1200-1349(1732)
5 smart00012 PTPc_DSPc Protein t 96.7 0.0044 9.6E-08 44.4 5.3 32 115-146 38-69 (105)
6 smart00404 PTPc_motif Protein 96.7 0.0044 9.6E-08 44.4 5.3 32 115-146 38-69 (105)
7 PF13350 Y_phosphatase3: Tyros 96.3 0.0073 1.6E-07 48.7 4.8 28 115-142 123-150 (164)
8 smart00195 DSPc Dual specifici 95.7 0.021 4.4E-07 44.1 5.0 34 103-136 65-98 (138)
9 cd00127 DSPc Dual specificity 95.6 0.029 6.3E-07 42.7 5.4 22 114-135 79-100 (139)
10 PF00782 DSPc: Dual specificit 95.1 0.038 8.1E-07 42.1 4.6 23 113-135 70-92 (133)
11 COG2365 Protein tyrosine/serin 94.6 0.082 1.8E-06 46.2 5.9 42 116-164 136-177 (249)
12 PF03162 Y_phosphatase2: Tyros 94.0 0.068 1.5E-06 44.1 3.9 46 112-165 87-133 (164)
13 PF00102 Y_phosphatase: Protei 92.1 0.36 7.7E-06 39.5 5.4 43 98-140 152-194 (235)
14 smart00194 PTPc Protein tyrosi 91.3 0.36 7.7E-06 41.2 4.8 25 116-140 193-217 (258)
15 cd00047 PTPc Protein tyrosine 91.3 0.39 8.4E-06 40.2 4.9 26 115-140 165-190 (231)
16 PTZ00242 protein tyrosine phos 90.7 0.69 1.5E-05 38.0 5.8 23 115-137 97-119 (166)
17 TIGR01244 conserved hypothetic 89.0 0.73 1.6E-05 36.4 4.5 31 110-141 80-110 (135)
18 PTZ00393 protein tyrosine phos 88.9 0.85 1.8E-05 40.4 5.2 24 115-138 169-192 (241)
19 PF05706 CDKN3: Cyclin-depende 88.8 1.2 2.6E-05 37.6 5.8 37 106-143 124-160 (168)
20 PHA02740 protein tyrosine phos 87.5 1.3 2.8E-05 39.7 5.6 22 116-137 221-242 (298)
21 PHA02742 protein tyrosine phos 87.0 0.54 1.2E-05 42.0 2.9 24 117-140 230-253 (303)
22 PHA02746 protein tyrosine phos 86.8 1.3 2.9E-05 40.0 5.3 23 117-139 248-270 (323)
23 PHA02738 hypothetical protein; 86.0 1.4 3.1E-05 39.8 5.1 22 117-138 228-249 (320)
24 COG2453 CDC14 Predicted protei 85.3 1.7 3.7E-05 35.8 4.9 36 99-135 89-124 (180)
25 PF04273 DUF442: Putative phos 85.0 1.6 3.4E-05 34.0 4.2 34 105-139 75-108 (110)
26 PHA02747 protein tyrosine phos 84.7 0.76 1.6E-05 41.3 2.7 22 117-138 230-251 (312)
27 COG5599 PTP2 Protein tyrosine 82.8 0.65 1.4E-05 42.2 1.4 31 115-145 217-247 (302)
28 PRK12361 hypothetical protein; 82.0 1.9 4.1E-05 41.3 4.3 34 103-136 162-195 (547)
29 KOG0789|consensus 76.0 3.4 7.3E-05 37.3 3.9 53 85-137 263-320 (415)
30 KOG0793|consensus 74.9 2.7 5.9E-05 42.9 3.1 44 97-140 908-951 (1004)
31 KOG2433|consensus 74.0 1.8 3.9E-05 41.6 1.6 62 101-162 487-554 (577)
32 PRK15375 pathogenicity island 73.5 4.6 9.9E-05 39.6 4.2 33 119-152 469-505 (535)
33 PF14566 PTPlike_phytase: Inos 70.0 9.4 0.0002 30.6 4.7 31 109-140 118-148 (149)
34 KOG0792|consensus 68.5 6.1 0.00013 41.7 4.1 19 116-134 1063-1081(1144)
35 PF15581 Imm35: Immunity prote 68.3 3.7 8.1E-05 31.5 1.9 22 141-162 25-46 (93)
36 KOG1716|consensus 66.2 14 0.0003 32.7 5.4 62 101-163 140-218 (285)
37 KOG0791|consensus 59.5 5.5 0.00012 37.5 1.7 62 80-141 246-312 (374)
38 KOG1719|consensus 57.2 14 0.0003 31.5 3.5 33 102-134 95-127 (183)
39 KOG2836|consensus 56.4 9.9 0.00021 31.8 2.5 33 113-145 94-126 (173)
40 KOG1572|consensus 52.9 19 0.0004 32.3 3.8 40 94-135 128-167 (249)
41 KOG1717|consensus 52.5 23 0.00051 32.6 4.4 49 91-140 226-274 (343)
42 PLN02727 NAD kinase 52.4 17 0.00037 38.2 4.0 35 103-137 327-362 (986)
43 KOG1718|consensus 51.4 37 0.0008 29.3 5.2 58 106-164 84-158 (198)
44 PF04179 Init_tRNA_PT: Initiat 50.8 36 0.00078 32.7 5.7 43 97-140 355-399 (451)
45 PF09184 PPP4R2: PPP4R2; Inte 42.9 17 0.00036 32.9 2.0 26 135-160 102-129 (288)
46 PF09954 DUF2188: Uncharacteri 39.7 11 0.00025 25.7 0.4 38 90-127 16-55 (62)
47 cd03067 PDI_b_PDIR_N PDIb fami 39.1 71 0.0015 25.4 4.7 43 101-143 36-111 (112)
48 COG3453 Uncharacterized protei 33.5 49 0.0011 26.9 3.1 30 108-138 79-108 (130)
49 PHA00742 hypothetical protein 33.3 41 0.0009 29.0 2.8 57 83-139 99-155 (211)
50 KOG4471|consensus 31.0 45 0.00098 33.7 3.0 21 48-68 342-362 (717)
51 PF03345 DDOST_48kD: Oligosacc 29.7 16 0.00035 34.8 -0.2 10 139-148 312-321 (423)
52 KOG1089|consensus 29.4 40 0.00087 33.6 2.4 35 59-98 283-317 (573)
53 PF00733 Asn_synthase: Asparag 27.9 1.1E+02 0.0024 24.9 4.5 37 99-138 3-39 (255)
54 PF07879 PHB_acc_N: PHB/PHA ac 26.3 1.1E+02 0.0024 22.1 3.6 34 106-142 23-57 (64)
55 cd01521 RHOD_PspE2 Member of t 25.9 80 0.0017 23.2 3.0 44 115-165 63-109 (110)
56 PRK06835 DNA replication prote 25.5 1.5E+02 0.0033 27.0 5.3 65 93-157 160-228 (329)
57 PLN02160 thiosulfate sulfurtra 24.7 94 0.002 24.3 3.4 48 115-168 80-128 (136)
58 PF13214 DUF4022: Protein of u 24.5 2.9E+02 0.0064 20.4 5.6 38 115-157 33-83 (83)
59 cd01527 RHOD_YgaP Member of th 23.2 79 0.0017 22.5 2.5 46 115-165 53-98 (99)
60 PF10660 MitoNEET_N: Iron-cont 23.1 28 0.0006 25.0 0.0 21 143-163 20-40 (64)
61 KOG1720|consensus 23.0 1.3E+02 0.0029 26.6 4.2 28 107-135 139-166 (225)
62 PRK11391 etp phosphotyrosine-p 21.8 57 0.0012 26.0 1.6 16 140-155 113-128 (144)
63 COG5350 Predicted protein tyro 20.9 1.4E+02 0.003 25.4 3.7 45 97-146 79-123 (172)
64 smart00450 RHOD Rhodanese Homo 20.6 1.2E+02 0.0025 20.5 2.8 28 115-142 55-82 (100)
65 KOG2754|consensus 20.3 25 0.00055 33.6 -0.8 10 139-148 337-346 (443)
66 COG2515 Acd 1-aminocyclopropan 20.2 2.4E+02 0.0052 26.3 5.4 68 99-170 224-303 (323)
No 1
>KOG4471|consensus
Probab=100.00 E-value=3.6e-65 Score=481.65 Aligned_cols=156 Identities=39% Similarity=0.748 Sum_probs=144.0
Q ss_pred CCCCCCC-CCCceeEeeccCChHHHHHHHHHHHHHhcCCCCCCCchhHHHhhhhhhhHHHHHHHHHHHhHhHHhhhccch
Q psy10181 2 KGMKPDS-ILKTDYIPVEYADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPK 80 (198)
Q Consensus 2 kg~~~~~-~~~~~~~~l~i~nih~~r~S~~kL~~~c~~~~~~~~~~~~~l~~le~s~Wl~~i~~~~~~~~~~~~~~~~~~ 80 (198)
.|+|.++ |||||++|+||+|||+||+||.|+.+.|.|.. +.+.|++
T Consensus 299 GG~Es~~~Y~naEi~Fl~i~NIH~mR~s~~~~k~~~~~~~-------------d~s~wlS-------------------- 345 (717)
T KOG4471|consen 299 GGYESEEAYPNAEIVFLGIHNIHVMRESLRKLKEICYPSP-------------DESNWLS-------------------- 345 (717)
T ss_pred CCccChhccccceEEEeecchhHHHHHHHHhHHHhhcCCC-------------CchhHHH--------------------
Confidence 4788877 69999999999999999999999999998752 3444555
Q ss_pred hhhHHHHhhhhccHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhh
Q psy10181 81 RLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWI 160 (198)
Q Consensus 81 ~~~~~l~~le~s~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi 160 (198)
.||+|+||+||+.+|.+|..||+.++.+++|||||||||||||+|++||||||||||||||+|||+||||||+
T Consensus 346 -------~Le~T~WL~Hi~~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWL 418 (717)
T KOG4471|consen 346 -------ALESTHWLEHISSLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWL 418 (717)
T ss_pred -------hhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Confidence 7778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCCCCCC-CCCCChHHHHHHHHHHHHHc
Q psy10181 161 AFGHRFSHRSNLNVHSP-ASGFTPTFLQFLDAVHQLIS 197 (198)
Q Consensus 161 ~fGH~F~~R~~~~~~~~-~~~~sPiFlqFLDcV~Ql~~ 197 (198)
+|||||++|+||+..+. +.++||||||||||||||++
T Consensus 419 sFGHkFadRvGhg~ns~~~ndrsPVFLQwlDcV~Ql~r 456 (717)
T KOG4471|consen 419 SFGHKFADRVGHGNNSHGDNDRSPVFLQWLDCVWQLMR 456 (717)
T ss_pred hcCChhhhhcCCCCCcccccccCchhHHHHHHHHHHHH
Confidence 99999999999998764 48899999999999999986
No 2
>KOG1089|consensus
Probab=100.00 E-value=3.2e-62 Score=462.09 Aligned_cols=157 Identities=38% Similarity=0.719 Sum_probs=141.3
Q ss_pred CCCCCCC-CCCceeEeeccCChHHHHHHHHHHHHHhcCCCCCCCchhHHHhhhhhhhHHHHHHHHHHHhHhHHhhhccch
Q psy10181 2 KGMKPDS-ILKTDYIPVEYADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPK 80 (198)
Q Consensus 2 kg~~~~~-~~~~~~~~l~i~nih~~r~S~~kL~~~c~~~~~~~~~~~~~l~~le~s~Wl~~i~~~~~~~~~~~~~~~~~~ 80 (198)
||+||+. |+|++++|++|+|||+||+||+||+++|.+.. .++.+|++.|
T Consensus 268 ~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~kl~e~c~~~~---~~~~~~ls~L--------------------------- 317 (573)
T KOG1089|consen 268 GGYENEDNYSQWKFLFLGIENIHVVRSSLQKLLEVCNNFL---PTMDKWLSLL--------------------------- 317 (573)
T ss_pred CCCcchhhHHHHHHHhcCcchHHHHHHHHHHHHHHHhccC---ccHHHHHHHh---------------------------
Confidence 7999999 59999999999999999999999999998632 2344555554
Q ss_pred hhhHHHHhhhhccHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhh
Q psy10181 81 RLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWI 160 (198)
Q Consensus 81 ~~~~~l~~le~s~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi 160 (198)
|+|+||.||+.+|.+|+.+|++|+.+|.|||||||||||||+|||||||||||||||||+|||+|||||||
T Consensus 318 ---------E~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi 388 (573)
T KOG1089|consen 318 ---------ESSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWI 388 (573)
T ss_pred ---------hhccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 55555559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCCC--CCCCCCCChHHHHHHHHHHHHHc
Q psy10181 161 AFGHRFSHRSNLNV--HSPASGFTPTFLQFLDAVHQLIS 197 (198)
Q Consensus 161 ~fGH~F~~R~~~~~--~~~~~~~sPiFlqFLDcV~Ql~~ 197 (198)
+|||||.+||||.. ...++++||||+|||||||||++
T Consensus 389 ~~GH~F~~Rc~hl~~~~~~~ke~SPvF~qFLDcvwQl~~ 427 (573)
T KOG1089|consen 389 SFGHKFLDRCGHLAYNDGDSKEESPVFLQFLDCVWQLLE 427 (573)
T ss_pred HcCCcHHHhcCCcccccCCCcccCcHHHHHHHHHHHHHh
Confidence 99999999999986 34558999999999999999985
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=8.7e-61 Score=432.59 Aligned_cols=158 Identities=46% Similarity=0.796 Sum_probs=123.1
Q ss_pred CCCCCCC-CCCceeEeeccCChHHHHHHHHHHHHHhcCCCCCCCchhHHHhhhhhhhHHHHHHHHHHHhHhHHhhhccch
Q psy10181 2 KGMKPDS-ILKTDYIPVEYADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPK 80 (198)
Q Consensus 2 kg~~~~~-~~~~~~~~l~i~nih~~r~S~~kL~~~c~~~~~~~~~~~~~l~~le~s~Wl~~i~~~~~~~~~~~~~~~~~~ 80 (198)
||+|++. |+||+++|++|+|||.||+||.||+++|.+ .....+.+
T Consensus 154 ~G~E~~~~Y~~~~i~fl~i~nih~vr~s~~kl~~~~~~--~~~~~~~~-------------------------------- 199 (353)
T PF06602_consen 154 GGYENESNYPNCEIIFLNIPNIHSVRDSFQKLRELCSN--TNSDNDDS-------------------------------- 199 (353)
T ss_dssp -S---TTTSTTEEEEE-----HHHHHHHHHHHHHHH-S--SSS--HHH--------------------------------
T ss_pred cCCccccccccceEEeeecCcHHHHHHHHHHHHHHhcc--cccCCchh--------------------------------
Confidence 7899888 699999999999999999999999999921 12222333
Q ss_pred hhhHHHHhhhhccHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhh
Q psy10181 81 RLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWI 160 (198)
Q Consensus 81 ~~~~~l~~le~s~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi 160 (198)
|++++|+|+||++|+.+|++|..||++++.+|.+|||||+||||||+|+|||+|||||||||||+||++||||||+
T Consensus 200 ----~~~~le~s~Wl~~v~~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql~lDpyyRTi~GF~~LIeKeW~ 275 (353)
T PF06602_consen 200 ----WLSSLESSNWLDHVRSILSGASRIADLLHDEGSSVLVHCSDGWDRTSQLSSLAQLLLDPYYRTIEGFQVLIEKEWI 275 (353)
T ss_dssp ----HHHHHHHCTHHHHHHHHHHHHHHHHHHHHTT--EEEEECTTSSSHHHHHHHHHHHHH-CGGGSHHHHHHHHHHHTT
T ss_pred ----hhhccccCChHHHHHHHHHHHHHHHHHhhccCceEEEEcCCCCcccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3336666667779999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCC--CCCCCCCCChHHHHHHHHHHHHHc
Q psy10181 161 AFGHRFSHRSNLN--VHSPASGFTPTFLQFLDAVHQLIS 197 (198)
Q Consensus 161 ~fGH~F~~R~~~~--~~~~~~~~sPiFlqFLDcV~Ql~~ 197 (198)
+|||||.+|+||+ ...+++++||||+|||||||||++
T Consensus 276 ~fGH~F~~R~~~~~~~~~~~~~~sPvFl~FLDcV~ql~~ 314 (353)
T PF06602_consen 276 SFGHPFADRCGHGSSSSSSSSERSPVFLQFLDCVWQLLR 314 (353)
T ss_dssp TTT--HHHHHTTT--SSTTGCC---HHHHHHHHHHHHHH
T ss_pred hcCcchhhhcCCcccccccccccccchhHHHHHHHHHHH
Confidence 9999999999998 334568999999999999999985
No 4
>KOG1090|consensus
Probab=100.00 E-value=2e-41 Score=332.94 Aligned_cols=149 Identities=59% Similarity=1.015 Sum_probs=130.7
Q ss_pred CCCCCCCceeEeeccCChHHHHHHHHHHHHHhcCCCCCCCch-hHHHhhhhhhhHHHHHHHHHHHhHhHHhhhccchhhh
Q psy10181 5 KPDSILKTDYIPVEYADIRHTKAAFKKLMRACIPSRTNAEPD-QTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPKRLS 83 (198)
Q Consensus 5 ~~~~~~~~~~~~l~i~nih~~r~S~~kL~~~c~~~~~~~~~~-~~~l~~le~s~Wl~~i~~~~~~~~~~~~~~~~~~~~~ 83 (198)
+.+.-.|+++++++.+.++.+|.||+||++||.|+-+..+++ +.|++.+|.|+|++
T Consensus 1200 ~~~id~~ae~IpV~~~e~rq~r~sfkkl~kaC~p~~~~~e~~~~SFl~s~e~S~Wlq----------------------- 1256 (1732)
T KOG1090|consen 1200 RIDIDQQAELIPVEVFEERQVRASFKKLLKACVPGCPAAEPSPASFLESLEDSEWLQ----------------------- 1256 (1732)
T ss_pred cCChhhccceeeeechhHHHHHHHHHHHHHHhCCCCccCCCCHHHHHHHHhhcchHH-----------------------
Confidence 445558999999999999999999999999999975544332 35555555555555
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhhhcc
Q psy10181 84 TFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFG 163 (198)
Q Consensus 84 ~~l~~le~s~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi~fG 163 (198)
+|+.+|+.+..|+++++..++||+|..+||||.|+|++||+||++||||||++||++||||||++||
T Consensus 1257 -------------qIskllqlS~~VV~Lldl~~SSV~v~LEdG~dITtqlsSl~QLlsDPyYRtldGFrvLVEKEWLaFG 1323 (1732)
T KOG1090|consen 1257 -------------QISKLLQLSVLVVELLDLSNSSVLVGLEDGWDITTQLSSLSQLLSDPYYRTLDGFRVLVEKEWLAFG 1323 (1732)
T ss_pred -------------HHHHHHhhhhhhhhhhhccCCeEEEEeccCchhhhhhhhhhhhcCChhhhcccchhhhhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCChHHHHHHHHHHHHHc
Q psy10181 164 HRFSHRSNLNVHSPASGFTPTFLQFLDAVHQLIS 197 (198)
Q Consensus 164 H~F~~R~~~~~~~~~~~~sPiFlqFLDcV~Ql~~ 197 (198)
|+| +|.. ...+|+|+||||||||+.+
T Consensus 1324 HrF-Hr~~-------~~fsPsFlqFLDcVhQi~~ 1349 (1732)
T KOG1090|consen 1324 HRF-HRDT-------ETFSPSFLQFLDCVHQISQ 1349 (1732)
T ss_pred chh-cccc-------cccCchHHHHHHHHHHHHH
Confidence 999 6544 5589999999999999864
No 5
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=96.67 E-value=0.0044 Score=44.37 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=27.2
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhcccch
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLDPYYR 146 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyR 146 (198)
.+.+|+|||..|.+||..++++..++..+...
T Consensus 38 ~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~ 69 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGTFVALDILLQQLESE 69 (105)
T ss_pred CCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc
Confidence 36799999999999999999888887766654
No 6
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=96.67 E-value=0.0044 Score=44.37 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=27.2
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhcccch
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLDPYYR 146 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyR 146 (198)
.+.+|+|||..|.+||..++++..++..+...
T Consensus 38 ~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~ 69 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGTFVALDILLQQLESE 69 (105)
T ss_pred CCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc
Confidence 36799999999999999999888887766654
No 7
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.26 E-value=0.0073 Score=48.67 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=22.5
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhc
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLD 142 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLD 142 (198)
...+||+||+-|-|||-.+++|.+.++.
T Consensus 123 ~~~p~l~HC~aGKDRTG~~~alll~~lG 150 (164)
T PF13350_consen 123 APGPVLFHCTAGKDRTGVVAALLLSLLG 150 (164)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCCCccHHHHHHHHHHHcC
Confidence 3469999999999999999999998873
No 8
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=95.75 E-value=0.021 Score=44.06 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhCCceEEEecCCccchhhhhHHH
Q psy10181 103 QLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSL 136 (198)
Q Consensus 103 ~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSL 136 (198)
..+....+....+|.+|+|||..|.+||+.++..
T Consensus 65 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~ 98 (138)
T smart00195 65 PEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIA 98 (138)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHH
Confidence 3334434333448999999999999999887753
No 9
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=95.63 E-value=0.029 Score=42.74 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.4
Q ss_pred hCCceEEEecCCccchhhhhHH
Q psy10181 114 VQGSSVMLCLEDGWDITCQLSS 135 (198)
Q Consensus 114 ~~~~sVlvhcsdGwDrT~qlsS 135 (198)
.+|.+|+|||.+|.+||..++.
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHH
Confidence 3788999999999999987764
No 10
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=95.12 E-value=0.038 Score=42.12 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.1
Q ss_pred hhCCceEEEecCCccchhhhhHH
Q psy10181 113 DVQGSSVMLCLEDGWDITCQLSS 135 (198)
Q Consensus 113 ~~~~~sVlvhcsdGwDrT~qlsS 135 (198)
...|..|+|||..|-+||+.+++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHH
T ss_pred hcccceeEEEeCCCcccchHHHH
Confidence 33899999999999999988775
No 11
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.61 E-value=0.082 Score=46.17 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=35.3
Q ss_pred CceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhhhccc
Q psy10181 116 GSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGH 164 (198)
Q Consensus 116 ~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi~fGH 164 (198)
+-+||+||..|-|||..+++|.--++++..++ |-.|++.+++
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~-------v~~dyl~~~~ 177 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDET-------VAADYLLTNR 177 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhH-------HHHHHHHcCC
Confidence 49999999999999999999999999888886 4456666554
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=94.04 E-value=0.068 Score=44.05 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=31.5
Q ss_pred hhhCCceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHH-HHHHHhhhcccc
Q psy10181 112 LDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRV-LVEKEWIAFGHR 165 (198)
Q Consensus 112 l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~-LIeKEWi~fGH~ 165 (198)
++....+|||||.+|-|||..+++. ||-+.|.-. =|-.|+..|+-+
T Consensus 87 ld~~n~PvLiHC~~G~~rTG~vvg~--------lRk~Q~W~~~~i~~Ey~~f~~~ 133 (164)
T PF03162_consen 87 LDPRNYPVLIHCNHGKDRTGLVVGC--------LRKLQGWSLSSIFDEYRRFAGP 133 (164)
T ss_dssp H-GGG-SEEEE-SSSSSHHHHHHHH--------HHHHTTB-HHHHHHHHHHHHGG
T ss_pred hCCCCCCEEEEeCCCCcchhhHHHH--------HHHHcCCCHHHHHHHHHHhcCC
Confidence 5556789999999999999998864 565566543 366788877744
No 13
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=92.09 E-value=0.36 Score=39.49 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHh
Q psy10181 98 IQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 98 v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
...++.....+-+.-.....+++|||++|-.||..++++..++
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~ 194 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILI 194 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhhc
Confidence 3444444444444444467999999999999999998765543
No 14
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=91.26 E-value=0.36 Score=41.23 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.5
Q ss_pred CceEEEecCCccchhhhhHHHHHHh
Q psy10181 116 GSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 116 ~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
+.+|+|||++|-.||+.++++.-++
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~ 217 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILL 217 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHH
Confidence 6799999999999999999776543
No 15
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=91.26 E-value=0.39 Score=40.18 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=21.6
Q ss_pred CCceEEEecCCccchhhhhHHHHHHh
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
.+.+|+|||.+|-.||+.++++.-++
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~~~ 190 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDILL 190 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHH
Confidence 36799999999999999998765443
No 16
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=90.75 E-value=0.69 Score=37.99 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.7
Q ss_pred CCceEEEecCCccchhhhhHHHH
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLA 137 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLa 137 (198)
.|.+|+|||..|-.||+-+++..
T Consensus 97 ~g~~V~VHC~aGigRSgt~~a~y 119 (166)
T PTZ00242 97 PPETIAVHCVAGLGRAPILVALA 119 (166)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999888664
No 17
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=88.95 E-value=0.73 Score=36.38 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=24.7
Q ss_pred HHhhhCCceEEEecCCccchhhhhHHHHHHhh
Q psy10181 110 DLLDVQGSSVMLCLEDGWDITCQLSSLAQLCL 141 (198)
Q Consensus 110 ~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlL 141 (198)
+.++....+||+||..|- ||..+.+|.+...
T Consensus 80 ~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~~ 110 (135)
T TIGR01244 80 AAIGAAEGPVLAYCRSGT-RSSLLWGFRQAAE 110 (135)
T ss_pred HHHHhCCCCEEEEcCCCh-HHHHHHHHHHHHc
Confidence 444444578999999999 9999998877664
No 18
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=88.88 E-value=0.85 Score=40.44 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.9
Q ss_pred CCceEEEecCCccchhhhhHHHHH
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQ 138 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaq 138 (198)
.|..|+|||..|-.||+.+++...
T Consensus 169 ~g~~VaVHC~AGlGRTGtl~AayL 192 (241)
T PTZ00393 169 NNRAVAVHCVAGLGRAPVLASIVL 192 (241)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999998876543
No 19
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=88.78 E-value=1.2 Score=37.57 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhcc
Q psy10181 106 GAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDP 143 (198)
Q Consensus 106 ~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDP 143 (198)
..+...|. +|..|+|||--|-.||..+.+-.-+.|.+
T Consensus 124 ~eL~~~L~-~g~~V~vHC~GGlGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 124 EELAARLE-NGRKVLVHCRGGLGRTGLVAACLLLELGD 160 (168)
T ss_dssp HHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHH-S
T ss_pred HHHHHHHH-cCCEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 45667777 89999999999999999988655555543
No 20
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=87.48 E-value=1.3 Score=39.74 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=19.3
Q ss_pred CceEEEecCCccchhhhhHHHH
Q psy10181 116 GSSVMLCLEDGWDITCQLSSLA 137 (198)
Q Consensus 116 ~~sVlvhcsdGwDrT~qlsSLa 137 (198)
..+++||||+|-.||..+|++-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHH
Confidence 4689999999999999998765
No 21
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=86.96 E-value=0.54 Score=42.03 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=20.5
Q ss_pred ceEEEecCCccchhhhhHHHHHHh
Q psy10181 117 SSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 117 ~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
.+++||||+|-.||..++++--++
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i 253 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICI 253 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHH
Confidence 689999999999999999876443
No 22
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=86.78 E-value=1.3 Score=40.00 Aligned_cols=23 Identities=4% Similarity=0.157 Sum_probs=19.8
Q ss_pred ceEEEecCCccchhhhhHHHHHH
Q psy10181 117 SSVMLCLEDGWDITCQLSSLAQL 139 (198)
Q Consensus 117 ~sVlvhcsdGwDrT~qlsSLaqL 139 (198)
.+++||||+|-.||..++++--+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~ 270 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNA 270 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHH
Confidence 58999999999999999876443
No 23
>PHA02738 hypothetical protein; Provisional
Probab=86.00 E-value=1.4 Score=39.77 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=19.1
Q ss_pred ceEEEecCCccchhhhhHHHHH
Q psy10181 117 SSVMLCLEDGWDITCQLSSLAQ 138 (198)
Q Consensus 117 ~sVlvhcsdGwDrT~qlsSLaq 138 (198)
.+++|||++|-.||..++++.-
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi 249 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDI 249 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHH
Confidence 5899999999999998887653
No 24
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.26 E-value=1.7 Score=35.82 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHH
Q psy10181 99 QNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSS 135 (198)
Q Consensus 99 ~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsS 135 (198)
+.+-+.+..|...+. .|..|+|||.-|--||+-+.+
T Consensus 89 ~~l~~~v~~i~~~~~-~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 89 EDLDKIVDFIEEALS-KGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEcCCCCchHHHHHH
Confidence 344444555666666 888999999999999976654
No 25
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=84.98 E-value=1.6 Score=33.95 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHHHhhhCCceEEEecCCccchhhhhHHHHHH
Q psy10181 105 SGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQL 139 (198)
Q Consensus 105 a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqL 139 (198)
....++.++....+||+||..|. |...+-+|+|-
T Consensus 75 v~~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 33445666655679999999999 78888888875
No 26
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=84.68 E-value=0.76 Score=41.32 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.5
Q ss_pred ceEEEecCCccchhhhhHHHHH
Q psy10181 117 SSVMLCLEDGWDITCQLSSLAQ 138 (198)
Q Consensus 117 ~sVlvhcsdGwDrT~qlsSLaq 138 (198)
.+++||||+|-.||..++++--
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi 251 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDI 251 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHH
Confidence 5899999999999999997753
No 27
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=82.82 E-value=0.65 Score=42.17 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=27.9
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhcccc
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLDPYY 145 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyy 145 (198)
++.+++||||-|-.||.-+.+|-+||-+|-=
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~~ 247 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPND 247 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhcccc
Confidence 5688999999999999999999999987753
No 28
>PRK12361 hypothetical protein; Provisional
Probab=81.97 E-value=1.9 Score=41.33 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhCCceEEEecCCccchhhhhHHH
Q psy10181 103 QLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSL 136 (198)
Q Consensus 103 ~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSL 136 (198)
..|....+....+|.+|+|||.-|..|++-++.-
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~a 195 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCALGRGRSVLVLAA 195 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHH
Confidence 3333333333337899999999999999777643
No 29
>KOG0789|consensus
Probab=76.04 E-value=3.4 Score=37.29 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHhhhhccHHHH-----HHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHH
Q psy10181 85 FLKQIESSQWLQQ-----IQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLA 137 (198)
Q Consensus 85 ~l~~le~s~Wl~~-----v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLa 137 (198)
......-+.|.++ ...+|...............+++|||+.|-.||.-++.+-
T Consensus 263 ~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 263 SVVHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred eEEEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHH
Confidence 5666777888666 2223322222112222245789999999999998777544
No 30
>KOG0793|consensus
Probab=74.92 E-value=2.7 Score=42.89 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHh
Q psy10181 97 QIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 97 ~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
.-+.+|+--.+|-++......+|+|||+||-.||-.-+.+-+++
T Consensus 908 sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl 951 (1004)
T KOG0793|consen 908 SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVL 951 (1004)
T ss_pred chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHH
Confidence 56888888888888887666779999999999998888665555
No 31
>KOG2433|consensus
Probab=74.00 E-value=1.8 Score=41.60 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhCCceEEE------ecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhhhc
Q psy10181 101 IMQLSGAVVDLLDVQGSSVML------CLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAF 162 (198)
Q Consensus 101 ~L~~a~~va~~l~~~~~sVlv------hcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi~f 162 (198)
+-..+.+.|.....+|.+|+| |--=|-|-.-+---.-=|+|||+|.--+-.++.-+|-|+..
T Consensus 487 va~~~rELA~HFqt~GTPVMIGGgvLAHTIlGVd~n~~TGq~KFLILDPHYTGaeDl~tI~~KGWCgW 554 (577)
T KOG2433|consen 487 VAERVRELARHFQTSGTPVMIGGGVLAHTILGVDFNDTTGQTKFLILDPHYTGAEDLKTITSKGWCGW 554 (577)
T ss_pred HHHHHHHHHHHhhccCCcEEEccceeeeeEeeeeeecccCceEEEEeCCCcCChhhHHHHhhcccccc
Confidence 345567788888889999765 55555543322222334689999999999999999999976
No 32
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=73.46 E-value=4.6 Score=39.64 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=23.2
Q ss_pred EEEecCCccchhhhhHHHHHHhhc----ccchhHHHHH
Q psy10181 119 VMLCLEDGWDITCQLSSLAQLCLD----PYYRTLEGFR 152 (198)
Q Consensus 119 VlvhcsdGwDrT~qlsSLaqLlLD----PyyRTi~GF~ 152 (198)
.+||||.|--||-.+++... +.| .-+.++..|+
T Consensus 469 PVVHCSAGVGRTGTFIAi~l-lk~~~~~sle~IV~dlR 505 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALV-LKDNPHSNLEQVRADFR 505 (535)
T ss_pred ceEEcCCCCchHHHHHHHHH-HhccccCCHHHHHHHHH
Confidence 47999999999999998854 443 2344444444
No 33
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=69.98 E-value=9.4 Score=30.64 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=22.8
Q ss_pred HHHhhhCCceEEEecCCccchhhhhHHHHHHh
Q psy10181 109 VDLLDVQGSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 109 a~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
++.+. .+..+++||..|..||+-..+++.||
T Consensus 118 v~~~p-~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 118 VKSLP-KDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHhCC-CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34443 68999999999999999888777765
No 34
>KOG0792|consensus
Probab=68.52 E-value=6.1 Score=41.73 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=16.2
Q ss_pred CceEEEecCCccchhhhhH
Q psy10181 116 GSSVMLCLEDGWDITCQLS 134 (198)
Q Consensus 116 ~~sVlvhcsdGwDrT~qls 134 (198)
+-+||||||-|-.||-++.
T Consensus 1063 ~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1063 NPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred CCCeEEEccCCCCcceehH
Confidence 6799999999999996554
No 35
>PF15581 Imm35: Immunity protein 35
Probab=68.28 E-value=3.7 Score=31.46 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.0
Q ss_pred hcccchhHHHHHHHHHHHhhhc
Q psy10181 141 LDPYYRTLEGFRVLVEKEWIAF 162 (198)
Q Consensus 141 LDPyyRTi~GF~~LIeKEWi~f 162 (198)
.|.--+|++|.+.|||.||-..
T Consensus 25 ~esa~~~i~~l~~lIe~eWRGl 46 (93)
T PF15581_consen 25 EESARRTIRNLESLIEHEWRGL 46 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHcCC
Confidence 4556689999999999999643
No 36
>KOG1716|consensus
Probab=66.20 E-value=14 Score=32.69 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHh------hcccchhH----------HHHHH-HHHHHhhhcc
Q psy10181 101 IMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLC------LDPYYRTL----------EGFRV-LVEKEWIAFG 163 (198)
Q Consensus 101 ~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLl------LDPyyRTi----------~GF~~-LIeKEWi~fG 163 (198)
-+..|+...+.....|..|||||..|--|++-++ +|=|| ++--|..+ .||.. |.|.|..-.+
T Consensus 140 ~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~v-iAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~ 218 (285)
T KOG1716|consen 140 HFPEAISFIEKAREKGGKVLVHCQAGVSRSATLV-IAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSK 218 (285)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHH-HHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhcc
Confidence 3444555454445589999999999999996544 34333 23333322 57765 7666655444
No 37
>KOG0791|consensus
Probab=59.49 E-value=5.5 Score=37.50 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=51.2
Q ss_pred hhhhHHHHhhhhccHHHH-----HHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhh
Q psy10181 80 KRLSTFLKQIESSQWLQQ-----IQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCL 141 (198)
Q Consensus 80 ~~~~~~l~~le~s~Wl~~-----v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlL 141 (198)
...+++...+..+.|.+| -..+++-...+-+.+.....+++||||-|--||--.-+|=+|+-
T Consensus 246 ~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLq 312 (374)
T KOG0791|consen 246 AGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQ 312 (374)
T ss_pred ccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHH
Confidence 445677888889999876 56778888888889988889999999999999988888777763
No 38
>KOG1719|consensus
Probab=57.19 E-value=14 Score=31.52 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhCCceEEEecCCccchhhhhH
Q psy10181 102 MQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLS 134 (198)
Q Consensus 102 L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qls 134 (198)
|+.|.+-+......|.+|-|||.-|+-|++-++
T Consensus 95 i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV 127 (183)
T KOG1719|consen 95 IQKAVEFIHKNASLGKTVYVHCKAGRTRSATVV 127 (183)
T ss_pred HHHHHHHHHhccccCCeEEEEecCCCccchhhh
Confidence 445556555555689999999999999986554
No 39
>KOG2836|consensus
Probab=56.44 E-value=9.9 Score=31.77 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=27.6
Q ss_pred hhCCceEEEecCCccchhhhhHHHHHHhhcccc
Q psy10181 113 DVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYY 145 (198)
Q Consensus 113 ~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyy 145 (198)
+.-|.+|.|||--|-.|.+++++||-|=.-=-|
T Consensus 94 e~p~~cvavhcvaglgrapvlvalalie~gmky 126 (173)
T KOG2836|consen 94 EEPGCCVAVHCVAGLGRAPVLVALALIEAGMKY 126 (173)
T ss_pred hCCCCeEEEEeecccCcchHHHHHHHHHccccH
Confidence 447899999999999999999999977654444
No 40
>KOG1572|consensus
Probab=52.92 E-value=19 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHH
Q psy10181 94 WLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSS 135 (198)
Q Consensus 94 Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsS 135 (198)
|-......+..|..+ +|+..+.++|+||..|--||..+..
T Consensus 128 ~~~~~~~~i~~~l~~--lld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKV--LLDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred CCCChHHHHHHHHHH--HhcccCCceEEecCCCCcchhhhHH
Confidence 333444555555555 7777999999999999999977664
No 41
>KOG1717|consensus
Probab=52.45 E-value=23 Score=32.58 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=38.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHh
Q psy10181 91 SSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 91 ~s~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
+-+|=+.+....--|+...+--..+...|||||=-|--|+.-|| +|=||
T Consensus 226 sDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvt-vaYLM 274 (343)
T KOG1717|consen 226 SDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVT-VAYLM 274 (343)
T ss_pred cchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHH-HHHHH
Confidence 45788888888888888877666688899999999999986666 44333
No 42
>PLN02727 NAD kinase
Probab=52.44 E-value=17 Score=38.17 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHHHHHh-hhCCceEEEecCCccchhhhhHHHH
Q psy10181 103 QLSGAVVDLL-DVQGSSVMLCLEDGWDITCQLSSLA 137 (198)
Q Consensus 103 ~~a~~va~~l-~~~~~sVlvhcsdGwDrT~qlsSLa 137 (198)
+...+.++.+ +....+||+||..|-|||.-++|.=
T Consensus 327 EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~y 362 (986)
T PLN02727 327 EQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRW 362 (986)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHH
Confidence 3444556667 4457999999999999997777653
No 43
>KOG1718|consensus
Probab=51.35 E-value=37 Score=29.32 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhh----------------cccchhHHHHH-HHHHHHhhhccc
Q psy10181 106 GAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCL----------------DPYYRTLEGFR-VLVEKEWIAFGH 164 (198)
Q Consensus 106 ~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlL----------------DPyyRTi~GF~-~LIeKEWi~fGH 164 (198)
..-...+...|-.+||||--|-.|++-+| ||=||- -|--|-=.||- .||..|.--||-
T Consensus 84 AD~I~~v~~~gG~TLvHC~AGVSRSAsLC-lAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 84 ADKIHSVIMRGGKTLVHCVAGVSRSASLC-LAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHHHHhcCCcEEEEEccccchhHHHH-HHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 33334555688899999999999999998 777762 35555566874 599999888884
No 44
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=50.78 E-value=36 Score=32.73 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH-Hhhh-CCceEEEecCCccchhhhhHHHHHHh
Q psy10181 97 QIQNIMQLSGAVVD-LLDV-QGSSVMLCLEDGWDITCQLSSLAQLC 140 (198)
Q Consensus 97 ~v~~~L~~a~~va~-~l~~-~~~sVlvhcsdGwDrT~qlsSLaqLl 140 (198)
.++..|-.+..-+. .+.. .+.++||+|.+|-|.. +-++||=|+
T Consensus 355 ~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlS-VgVaLaILc 399 (451)
T PF04179_consen 355 DLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLS-VGVALAILC 399 (451)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHH-HHHHHHHHH
Confidence 56777766666554 4442 3899999999999975 333344443
No 45
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=42.87 E-value=17 Score=32.85 Aligned_cols=26 Identities=42% Similarity=0.637 Sum_probs=22.6
Q ss_pred HHHHHhhcc--cchhHHHHHHHHHHHhh
Q psy10181 135 SLAQLCLDP--YYRTLEGFRVLVEKEWI 160 (198)
Q Consensus 135 SLaqLlLDP--yyRTi~GF~~LIeKEWi 160 (198)
=|+.|++|| ||+++.-|..=++|--+
T Consensus 102 RlcEl~~~P~~~y~~~~k~~~alek~~~ 129 (288)
T PF09184_consen 102 RLCELLLDPRKHYKTLDKFLRALEKVVL 129 (288)
T ss_pred HHHHHHhChhhccccHHHHHHHHheeEE
Confidence 489999999 79999999998888643
No 46
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=39.71 E-value=11 Score=25.71 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=22.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHhhhC--CceEEEecCCcc
Q psy10181 90 ESSQWLQQIQNIMQLSGAVVDLLDVQ--GSSVMLCLEDGW 127 (198)
Q Consensus 90 e~s~Wl~~v~~~L~~a~~va~~l~~~--~~sVlvhcsdGw 127 (198)
+...+.......-+.|...|+.+..+ +..|+||-.||.
T Consensus 16 eg~~ra~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~ 55 (62)
T PF09954_consen 16 EGAKRASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGK 55 (62)
T ss_pred CCCcccccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCe
Confidence 33333334444444555555544433 688999999996
No 47
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=39.11 E-value=71 Score=25.39 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhCCceEEEecCC---------------------------------ccchhhhhHHHHHHhhcc
Q psy10181 101 IMQLSGAVVDLLDVQGSSVMLCLED---------------------------------GWDITCQLSSLAQLCLDP 143 (198)
Q Consensus 101 ~L~~a~~va~~l~~~~~sVlvhcsd---------------------------------GwDrT~qlsSLaqLlLDP 143 (198)
.|..-..+|+.+...|.-+.|-|+| .+||-.-+-|++-.|-||
T Consensus 36 ~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 36 LLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred HHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccccchhhHHHHHHHhhCC
Confidence 3445556667776667777777776 367777777777777777
No 48
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.48 E-value=49 Score=26.93 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHhhhCCceEEEecCCccchhhhhHHHHH
Q psy10181 108 VVDLLDVQGSSVMLCLEDGWDITCQLSSLAQ 138 (198)
Q Consensus 108 va~~l~~~~~sVlvhcsdGwDrT~qlsSLaq 138 (198)
.++.++..+-+||.||..|- |+..+-+|.|
T Consensus 79 f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~ 108 (130)
T COG3453 79 FQRALDEAEGPVLAYCRSGT-RSLNLYGLGE 108 (130)
T ss_pred HHHHHHHhCCCEEeeecCCc-hHHHHHHHHH
Confidence 34577778899999999998 6777777887
No 49
>PHA00742 hypothetical protein
Probab=33.26 E-value=41 Score=28.99 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=45.0
Q ss_pred hHHHHhhhhccHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHH
Q psy10181 83 STFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQL 139 (198)
Q Consensus 83 ~~~l~~le~s~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqL 139 (198)
|+|-+.=-.-+.=+.|-++|+..+.+|..-+.-|+...||..|-.|.--.+++|--+
T Consensus 99 SswteeqSkeRYGe~vyAiLstKvevA~kydV~GRv~FihynD~EDKlk~isALqil 155 (211)
T PHA00742 99 SSWTEEQSKERYGESVYAILSTKVEVAKKYDVMGRVWFIHYNDTEDKLKCISALQIL 155 (211)
T ss_pred CccchhhhHHhcCcchHHHHHHHHHHHHhhcccceEEEEEecChhHhhhhhHHHHHh
Confidence 334333333444557899999999999999999999999999999998888887443
No 50
>KOG4471|consensus
Probab=30.95 E-value=45 Score=33.69 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=18.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q psy10181 48 TFLKQIESSQWLQQIQNIMQL 68 (198)
Q Consensus 48 ~~l~~le~s~Wl~~i~~~~~~ 68 (198)
+|++.||+++||.+|+-+..-
T Consensus 342 ~wlS~Le~T~WL~Hi~~lLag 362 (717)
T KOG4471|consen 342 NWLSALESTHWLEHISSLLAG 362 (717)
T ss_pred hHHHhhccchHHHHHHHHHHH
Confidence 799999999999999988643
No 51
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=29.71 E-value=16 Score=34.79 Aligned_cols=10 Identities=50% Similarity=0.866 Sum_probs=8.4
Q ss_pred HhhcccchhH
Q psy10181 139 LCLDPYYRTL 148 (198)
Q Consensus 139 LlLDPyyRTi 148 (198)
.||||||||-
T Consensus 312 ~mLDPy~R~~ 321 (423)
T PF03345_consen 312 VMLDPYVRLT 321 (423)
T ss_pred EEcCcEEEcc
Confidence 5899999974
No 52
>KOG1089|consensus
Probab=29.35 E-value=40 Score=33.56 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHhHHhhhccchhhhHHHHhhhhccHHHHH
Q psy10181 59 LQQIQNIMQLSGAVVDLLYLPKRLSTFLKQIESSQWLQQI 98 (198)
Q Consensus 59 l~~i~~~~~~~~~~~~~~~~~~~~~~~l~~le~s~Wl~~v 98 (198)
+..|+|||.+++++..+..+-.+ ......+||..+
T Consensus 283 f~~i~nIh~v~~s~~kl~e~c~~-----~~~~~~~~ls~L 317 (573)
T KOG1089|consen 283 FLGIENIHVVRSSLQKLLEVCNN-----FLPTMDKWLSLL 317 (573)
T ss_pred hcCcchHHHHHHHHHHHHHHHhc-----cCccHHHHHHHh
Confidence 45799999999997665443221 233445677654
No 53
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=27.95 E-value=1.1e+02 Score=24.86 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHH
Q psy10181 99 QNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQ 138 (198)
Q Consensus 99 ~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaq 138 (198)
+.+|..|+ .+.+. .+.+|.+..|-|.|.+++++.+++
T Consensus 3 r~~l~~av--~~rl~-~~~~i~~~LSGGlDSs~i~~~~~~ 39 (255)
T PF00733_consen 3 RELLEEAV--ARRLR-SDKPIGILLSGGLDSSAIAALAAR 39 (255)
T ss_dssp HHHHHHHH--HHHCG-CTSEEEEE--SSHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHh-cCCCEEEECCCChhHHHHHHHHHH
Confidence 44454443 35565 789999999999999988888888
No 54
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=26.31 E-value=1.1e+02 Score=22.05 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=24.6
Q ss_pred HHHHHHhhhCCceEE-EecCCccchhhhhHHHHHHhhc
Q psy10181 106 GAVVDLLDVQGSSVM-LCLEDGWDITCQLSSLAQLCLD 142 (198)
Q Consensus 106 ~~va~~l~~~~~sVl-vhcsdGwDrT~qlsSLaqLlLD 142 (198)
..|++.+. .|..|. +.-..|-|.|..+ |+||++.
T Consensus 23 ~di~~lV~-~g~~~~V~D~ktgeDiT~~i--L~QIi~e 57 (64)
T PF07879_consen 23 EDIAQLVR-EGEDFKVVDAKTGEDITRSI--LLQIILE 57 (64)
T ss_pred HHHHHHHH-CCCeEEEEECCCCcccHHHH--HHHHHHH
Confidence 35667777 777654 4566799999876 7888874
No 55
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=25.87 E-value=80 Score=23.20 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=26.7
Q ss_pred CCceEEEecCCcc-chhhhhH-HHHHHhhcccchhHH-HHHHHHHHHhhhcccc
Q psy10181 115 QGSSVMLCLEDGW-DITCQLS-SLAQLCLDPYYRTLE-GFRVLVEKEWIAFGHR 165 (198)
Q Consensus 115 ~~~sVlvhcsdGw-DrT~qls-SLaqLlLDPyyRTi~-GF~~LIeKEWi~fGH~ 165 (198)
.+..|+|.|..|. .+.+.++ .|.++=.+ .+.++ |+ .+|...|.|
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~--v~~l~GG~-----~~W~~~g~~ 109 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP--VKEMIGGL-----DWWKREGYA 109 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe--EEEecCCH-----HHHHHCCCC
Confidence 6788999999986 3444443 34455443 23566 55 456666654
No 56
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.47 E-value=1.5e+02 Score=27.03 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhccc----chhHHHHHHHHHH
Q psy10181 93 QWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPY----YRTLEGFRVLVEK 157 (198)
Q Consensus 93 ~Wl~~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPy----yRTi~GF~~LIeK 157 (198)
...+.++.++..+..-++.....+.+++++...|--.|-...++|.-+++.. |-|...|...+.+
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 3455777778777777776666778999999999999999999999888754 5566666665544
No 57
>PLN02160 thiosulfate sulfurtransferase
Probab=24.72 E-value=94 Score=24.33 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=27.9
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhcccchhH-HHHHHHHHHHhhhccccccc
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTL-EGFRVLVEKEWIAFGHRFSH 168 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi-~GF~~LIeKEWi~fGH~F~~ 168 (198)
.+..|+++|..|.....-...|.+.-. ...+-+ .|+ .+|..-|+|...
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~-~~v~~l~GG~-----~~W~~~g~p~~~ 128 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGY-KKVRNKGGGY-----LAWVDHSFPINQ 128 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCC-CCeeecCCcH-----HHHhhCCCCccc
Confidence 678899999999744333333333211 111122 344 569999988753
No 58
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=24.50 E-value=2.9e+02 Score=20.39 Aligned_cols=38 Identities=39% Similarity=0.740 Sum_probs=25.0
Q ss_pred CCceEEEecCCccchh------hhhHH-------HHHHhhcccchhHHHHHHHHHH
Q psy10181 115 QGSSVMLCLEDGWDIT------CQLSS-------LAQLCLDPYYRTLEGFRVLVEK 157 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT------~qlsS-------LaqLlLDPyyRTi~GF~~LIeK 157 (198)
-|.|+=+ ||-||... |.++| ..-++.-|-|- |..||||
T Consensus 33 igisiei-csygwkksngiky~cl~~slllgt~silgl~~apayf----flqliek 83 (83)
T PF13214_consen 33 IGISIEI-CSYGWKKSNGIKYFCLLLSLLLGTASILGLCVAPAYF----FLQLIEK 83 (83)
T ss_pred hhceeee-eccccccCCCeeeHHHHHHHHHhHHHHHHHHHhHHHH----HHHHhhC
Confidence 5778777 89999764 44443 34566677663 6677776
No 59
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=23.24 E-value=79 Score=22.45 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhhhcccc
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHR 165 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi~fGH~ 165 (198)
....|++.|.+|.........|.++-.+..|.=-.|+ .+|..-|.|
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~-----~~W~~~~~~ 98 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL-----DAWKAAGLP 98 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH-----HHHHHCcCC
Confidence 5678999999997655444455555444333333444 456665544
No 60
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=23.10 E-value=28 Score=25.04 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHhhhcc
Q psy10181 143 PYYRTLEGFRVLVEKEWIAFG 163 (198)
Q Consensus 143 PyyRTi~GF~~LIeKEWi~fG 163 (198)
|-=+|+.||-.|=-|||++.=
T Consensus 20 PiP~s~gg~f~Ls~kdWl~Lv 40 (64)
T PF10660_consen 20 PIPDSFGGFFKLSVKDWLALV 40 (64)
T ss_dssp ---------------------
T ss_pred cccccccccccccHHHHHHHH
Confidence 666899999999999999876
No 61
>KOG1720|consensus
Probab=23.02 E-value=1.3e+02 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=21.2
Q ss_pred HHHHHhhhCCceEEEecCCccchhhhhHH
Q psy10181 107 AVVDLLDVQGSSVMLCLEDGWDITCQLSS 135 (198)
Q Consensus 107 ~va~~l~~~~~sVlvhcsdGwDrT~qlsS 135 (198)
.|++-.. +|.-+.|||--|--||.-+.+
T Consensus 139 ~i~e~~~-~~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 139 KIVENAE-KGGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred HHHHHHH-hcCeEEEEeccCCCchhHHHH
Confidence 4455555 388999999999999966643
No 62
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=21.82 E-value=57 Score=25.95 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.8
Q ss_pred hhcccchhHHHHHHHH
Q psy10181 140 CLDPYYRTLEGFRVLV 155 (198)
Q Consensus 140 lLDPyyRTi~GF~~LI 155 (198)
+-||||.+.++|+...
T Consensus 113 I~DPy~~~~~~f~~~~ 128 (144)
T PRK11391 113 IPDPYRKSQDAFEHVY 128 (144)
T ss_pred CCCCccCCHHHHHHHH
Confidence 6799999999998753
No 63
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=20.89 E-value=1.4e+02 Score=25.45 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCceEEEecCCccchhhhhHHHHHHhhcccch
Q psy10181 97 QIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYR 146 (198)
Q Consensus 97 ~v~~~L~~a~~va~~l~~~~~sVlvhcsdGwDrT~qlsSLaqLlLDPyyR 146 (198)
||+.++.= ++... +-.+.||||--|-.|++-.+-.+-+-++||--
T Consensus 79 Hv~~i~DF----~~~wp-~~apllIHC~aGISRStA~A~i~a~ala~~~d 123 (172)
T COG5350 79 HVRAIIDF----ADEWP-RFAPLLIHCYAGISRSTAAALIAALALAPDMD 123 (172)
T ss_pred HHHHHHHH----HhcCc-cccceeeeeccccccchHHHHHHHHhhccccC
Confidence 77776643 44555 67899999999999998877777778888853
No 64
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=20.62 E-value=1.2e+02 Score=20.49 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=18.5
Q ss_pred CCceEEEecCCccchhhhhHHHHHHhhc
Q psy10181 115 QGSSVMLCLEDGWDITCQLSSLAQLCLD 142 (198)
Q Consensus 115 ~~~sVlvhcsdGwDrT~qlsSLaqLlLD 142 (198)
.+..|+|+|..|.........|.+.-.+
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 6788999999888654444444444443
No 65
>KOG2754|consensus
Probab=20.31 E-value=25 Score=33.55 Aligned_cols=10 Identities=50% Similarity=0.909 Sum_probs=8.4
Q ss_pred HhhcccchhH
Q psy10181 139 LCLDPYYRTL 148 (198)
Q Consensus 139 LlLDPyyRTi 148 (198)
+++||||||.
T Consensus 337 v~iDPyvR~t 346 (443)
T KOG2754|consen 337 VRIDPYVRTT 346 (443)
T ss_pred EEeCchheeE
Confidence 4789999985
No 66
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=20.24 E-value=2.4e+02 Score=26.33 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhC-CceEEEecCC-----------ccchhhhhHHHHHHhhcccchhHHHHHHHHHHHhhhccccc
Q psy10181 99 QNIMQLSGAVVDLLDVQ-GSSVMLCLED-----------GWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRF 166 (198)
Q Consensus 99 ~~~L~~a~~va~~l~~~-~~sVlvhcsd-----------GwDrT~qlsSLaqLlLDPyyRTi~GF~~LIeKEWi~fGH~F 166 (198)
..+++-+...|+.+... ...|++-|.- +.+.--++.++-=|++||.| |.++|+-||.-.|=. +|
T Consensus 224 ~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVY-tgKam~Glid~~~k~---~f 299 (323)
T COG2515 224 EQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVY-TGKAMYGLIDLARKG---EF 299 (323)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCccccccc-chHHHHHHHHHHhcc---cC
Confidence 34555566666666644 3334443332 23344566677779999999 456677777777743 25
Q ss_pred cccc
Q psy10181 167 SHRS 170 (198)
Q Consensus 167 ~~R~ 170 (198)
.++.
T Consensus 300 ~~~~ 303 (323)
T COG2515 300 PDGS 303 (323)
T ss_pred CCCC
Confidence 5544
Done!