RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10181
(198 letters)
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 143 bits (362), Expect = 9e-41
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 19 YADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQ----------IQNIMQL 68
I + A K+ NA ++ ES Q I + +
Sbjct: 234 LQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRES 293
Query: 69 SGAVVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWD 128
+ +++Y + +L +ES+ WL+ I+ I+ + + D ++ +SV++ DGWD
Sbjct: 294 LRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWD 353
Query: 129 ITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSPASG-FTPTFLQ 187
T QL+SLA L LD YYRT+ GF VLVEKEW++FGHRF R + A +P FLQ
Sbjct: 354 RTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQ 413
Query: 188 FLDAVHQLI 196
F+D V Q+
Sbjct: 414 FIDCVWQMT 422
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 140 bits (354), Expect = 3e-39
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 59 LQQIQNIMQLSGAVVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSS 118
+ I + + + +++Y + +L +ES+ WL+ I+ I+ + + D ++ +S
Sbjct: 356 IHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTS 415
Query: 119 VMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSP- 177
V++ DGWD T QL+SLA L LD YYRT+ GF VLVEKEW++FGHRF R +
Sbjct: 416 VVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHA 475
Query: 178 ASGFTPTFLQFLDAVHQLI 196
+ +P FLQF+D V Q+
Sbjct: 476 DADRSPVFLQFIDCVWQMT 494
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 127 bits (319), Expect = 1e-34
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 6 PDSILKTDYIPVEYADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQIQNI 65
D+ + V +I +++ +KL+ +
Sbjct: 258 EDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVND-------------------- 297
Query: 66 MQLSGAVVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLED 125
F +ESS WL+ I+ +M + + + V+ +SV++ D
Sbjct: 298 -------------------FYSGLESSGWLRHIKAVMDAAVFLAKAITVENASVLVHCSD 338
Query: 126 GWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSPASGFTPTF 185
GWD T Q+ SL L LD YYRT++GF VL+EK+WI+FGH+FS R + +P F
Sbjct: 339 GWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSERCG-QLDGDPKEVSPVF 397
Query: 186 LQFLDAVHQLI 196
QFL+ V L
Sbjct: 398 TQFLECVWHLT 408
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.002
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 33/104 (31%)
Query: 33 MRACIPSRTNAEPDQTFLKQI-----ESSQWLQQIQNI----MQ--LSGAVVDLLYLPKR 81
M A P R A Q L+ + + + WL +I N Q +G + L
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL----DT 1864
Query: 82 LSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLED 125
++ L I+ +Q I D++++Q L LE+
Sbjct: 1865 VTNVLNFIK-------LQKI--------DIIELQ---KSLSLEE 1890
Score = 31.9 bits (72), Expect = 0.15
Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 65/203 (32%)
Query: 13 DYIPVE----YADIRHTKAAFKKLMRACI--PSRTNAEPDQTFLKQIESSQWLQQIQNIM 66
DY E Y K + RT + ++ F + + +WL+
Sbjct: 168 DYFE-ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN----- 221
Query: 67 QLSGAVVDLLYL---PKRLSTFLKQIESSQWLQ-------------QIQNIMQ-LSGAVV 109
D YL P +S I Q ++++ ++ +G
Sbjct: 222 --PSNTPDKDYLLSIP--IS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 110 DLLDVQGSSVMLCLEDGWDITCQLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHR 169
L+ ++V + D W+ + + VL +I G R +
Sbjct: 276 GLV----TAVAIAETDSWE---SFFVSVRKAI----------TVLF---FI--GVR-CYE 312
Query: 170 SNLNVHSPASGFTPTFLQFLDAV 192
+ P + P+ L+ D++
Sbjct: 313 A-----YPNTSLPPSILE--DSL 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.003
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 46/176 (26%)
Query: 37 IPSRTNAEPDQTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPKRLSTFLKQIES-SQWL 95
+ S E Q + + ++ N Q+ K + L+ Q L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---------FAKYNVSRLQPYLKLRQAL 144
Query: 96 QQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITCQLSSLA-QLCLDPYYRTLEGFRVL 154
+++ + V+ + G +L G + +A +CL + F++
Sbjct: 145 LELRP----AKNVL----IDG---VL----G----SGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 155 VEKEWIAFGHRFSHRS------NL------NVHSPASGFTPTFLQFLDAVHQLISL 198
W+ + S + L N S + + L+ +L L
Sbjct: 186 ----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Score = 29.4 bits (65), Expect = 0.84
Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 1 MKGMKPDSILKTDYIPVEYADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQ 60
+K ++ + + + D R + K+ + T L+Q++ +
Sbjct: 481 LKNIEHPE--RMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNT-LQQLK--FYKP 532
Query: 61 QIQ-NIMQLSGAVVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLS 105
I N + V +L FL +IE + + ++++++
Sbjct: 533 YICDNDPKYERLVNAIL-------DFLPKIEENLICSKYTDLLRIA 571
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.3 bits (59), Expect = 1.2
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
G RF H L H
Sbjct: 18 GTRFRHLQTLKSH 30
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein
complex, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; 2.30A {Mus musculus} PDB:
3d0t_A
Length = 88
Score = 26.8 bits (59), Expect = 1.5
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 21 DIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPK 80
D+ + K+ L AC DQ F + + A+ D + +
Sbjct: 26 DLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIV--------------IGCALEDQKKIKR 71
Query: 81 RLSTFLKQIESSQ 93
RL T L+ I++S
Sbjct: 72 RLETLLRNIDNSD 84
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 26.3 bits (59), Expect = 1.8
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 163 GHRFSHRSNLNVH 175
+ S ++ L +H
Sbjct: 16 SYSCSSKAALRIH 28
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.1
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 24/48 (50%)
Query: 47 QTFLKQIESSQWLQQIQNIMQLSGAVVDLLYLPKR---LSTFLK-QIE 90
Q LK++++S L+ LY L+ +K +E
Sbjct: 20 QA-LKKLQAS--LK---------------LYADDSAPALA--IKATME 47
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 2.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 163 GHRFSHRSNLNVH 175
G F+H++NL +H
Sbjct: 19 GKVFTHKTNLIIH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 2.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 166 FSHRSNLNVH 175
FSHR +L+VH
Sbjct: 22 FSHRQSLSVH 31
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 26.2 bits (58), Expect = 2.5
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 163 GHRFSHRSNLNVH 175
G +++LN H
Sbjct: 14 GFTCRQKASLNWH 26
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 26.3 bits (59), Expect = 6.7
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 75 LLYLPKRLSTFLKQIESSQWLQQIQNIMQ 103
++ P ++++ WL I +Q
Sbjct: 276 IILFPATIASWFGGGTGWNWLTTISLYLQ 304
>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC,
structural genomics, protein structure initiative; 1.92A
{Uncultured bacterium}
Length = 134
Score = 25.6 bits (56), Expect = 7.4
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 8/59 (13%)
Query: 144 YYRTLEGFRVLVEKEWIAFGHRFSHRSNLNVHSPAS----GFTPTFLQF----LDAVHQ 194
+ GF + A+ L G + +D++H
Sbjct: 24 LFCDTLGFELKYRHSNYAYLELSGCGLRLLEEPARKIIPDGIARVAICIDVSDIDSLHT 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.406
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,966,205
Number of extensions: 160161
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 32
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.8 bits)