RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10181
(198 letters)
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 158 bits (402), Expect = 6e-48
Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 72 VVDLLYLPKRLSTFLKQIESSQWLQQIQNIMQLSGAVVDLLDVQGSSVMLCLEDGWDITC 131
+ +++Y + +L +ES+ WL+ I+ I+ + + D ++ +SV++ DGWD T
Sbjct: 168 LKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTA 227
Query: 132 QLSSLAQLCLDPYYRTLEGFRVLVEKEWIAFGHRFSHRSN-LNVHSPASGFTPTFLQFLD 190
QL+SLA L LD YYRT+ GF VLVEKEW++FGHRF R + + + +P FLQF+D
Sbjct: 228 QLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFID 287
Query: 191 AVHQLI 196
V Q+
Sbjct: 288 CVWQMT 293
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain)
{Mastigocladus laminosus [TaxId: 83541]}
Length = 67
Score = 28.4 bits (63), Expect = 0.11
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 35 ACIPS----RTNAEPDQTFL-KQIESSQWLQQIQNIMQLSGAVV 73
AC+PS RT E T+ K + W ++ Q I ++ G +V
Sbjct: 8 ACVPSQTRIRTQRELQNTYFTKLVPYENWFREQQRIQKMGGKIV 51
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 25.3 bits (56), Expect = 0.69
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
G FS S L H
Sbjct: 14 GKAFSRSSILVQH 26
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.5 bits (56), Expect = 0.73
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 156 EK--EWIAFGHRFSHRSNLNVH 175
+ + G FSH S+L+ H
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKH 31
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (55), Expect = 0.80
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
RF +L+ H
Sbjct: 9 PKRFMRSDHLSKH 21
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 24.7 bits (54), Expect = 1.4
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 156 EK--EWIAFGHRFSHRSNLNVH 175
K + FS +L +H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALH 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.6 bits (54), Expect = 1.6
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
F + L++H
Sbjct: 15 DKTFRQKQLLDMH 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 24.6 bits (54), Expect = 1.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 163 GHRFSHRSNLNVH 175
G FS +LN H
Sbjct: 12 GKGFSRPDHLNGH 24
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.1 bits (53), Expect = 1.7
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 163 GHRFSHRSNLNVH 175
FS +L H
Sbjct: 10 MRNFSRSDHLTTH 22
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.2 bits (53), Expect = 2.0
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
RF+ + +H
Sbjct: 15 HARFTQSGTMKMH 27
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain
{Escherichia coli [TaxId: 562]}
Length = 193
Score = 26.4 bits (57), Expect = 2.2
Identities = 19/89 (21%), Positives = 30/89 (33%)
Query: 16 PVEYADIRHTKAAFKKLMRACIPSRTNAEPDQTFLKQIESSQWLQQIQNIMQLSGAVVDL 75
P D + A + M S T K + WL + Q A D+
Sbjct: 97 PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADV 156
Query: 76 LYLPKRLSTFLKQIESSQWLQQIQNIMQL 104
YL + + + E+S WL + +L
Sbjct: 157 WYLLPITAKLMVETEASGWLPAALDECRL 185
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (52), Expect = 2.2
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
G RF+ L H
Sbjct: 11 GKRFTRSDELQRH 23
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 23.7 bits (52), Expect = 2.6
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 163 GHRFSHRSNLNVH 175
F+ + +L H
Sbjct: 9 TRAFARQEHLKRH 21
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 90
Score = 24.7 bits (54), Expect = 3.3
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 144 YYRTLE----GFRVLVEKEWIAFGHRFSHRSNLNVHSPASGFTPT 184
Y LE GFR + + + +SH + + + P
Sbjct: 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPE 45
>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI,
C-terminal (catalytic) domain {Flavobacterium
okeanokoites [TaxId: 244]}
Length = 193
Score = 25.3 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 3 GMKPDSILKTDYIPVEYADIRHTKA 27
KPD + T P++Y I TKA
Sbjct: 60 SRKPDGAIYTVGSPIDYGVIVDTKA 84
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 23.1 bits (49), Expect = 7.8
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 163 GHRFSHRSNLNVH 175
G +F + +L H
Sbjct: 37 GKKFKMKHHLVGH 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.406
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,195
Number of extensions: 30599
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 21
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.2 bits)