Query psy10185
Match_columns 196
No_of_seqs 113 out of 1289
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 20:03:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 8.6E-39 3E-43 253.8 14.5 173 22-196 101-280 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3.7E-38 1.3E-42 249.4 12.1 174 23-196 5-195 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.8E-37 6.1E-42 245.5 14.1 168 24-196 111-291 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.5E-37 1.9E-41 243.4 11.1 166 28-196 4-186 (303)
5 3fbl_A Putative uncharacterize 18.3 1.2E+02 0.0041 17.3 2.9 26 65-90 3-28 (82)
6 2acm_A Mucin-1; auto-catalytic 17.1 20 0.00069 20.4 -0.6 20 64-83 40-59 (66)
7 3f2e_A SIRV coat protein; four 16.1 1.1E+02 0.0038 18.3 2.4 61 62-143 7-71 (100)
8 3vjj_A P9-1; 3.00A {Rice black 14.4 1.2E+02 0.0042 23.1 2.8 50 135-187 273-322 (368)
9 2l5r_A Antimicrobial peptide a 10.3 1.6E+02 0.0055 13.1 1.6 20 70-90 2-21 (26)
10 1g1e_B SIN3A; four-helix bundl 9.2 99 0.0034 19.0 0.8 25 46-73 17-41 (89)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.6e-39 Score=253.75 Aligned_cols=173 Identities=26% Similarity=0.408 Sum_probs=157.6
Q ss_pred CChHHHHHHHHHHHHHHHhhhcChHHHHHHHHHcCCC--CCCCCCcHHHHHHHHHHhhchhhhhcchhhhHHHHhcchhH
Q psy10185 22 RSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHS--KAFHYDSLRQALVHIFRTEGLKGLWSGTVATLVRDAPYSGL 99 (196)
Q Consensus 22 ~~~~~~~~~~g~~a~~~~~~v~~Pld~vk~~~q~~~~--~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 99 (196)
..+....+++|++||+++.++++|+|++|+|+|++.. ....|++.++++++|+++||++|||||+.+++++.++..++
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999753 24468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCchhHHHHHHHhHHHHhHhhhcchHHHHHHhHhhcc----CCc-hhhhhHHHhccccccc
Q psy10185 100 HFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATATLVTQPADIIKTRIQLTC----QSP-ATSSLKYADYGVLGFV 174 (196)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~~~ik~r~~~~~----~~~-~~~~~i~~~~G~~gly 174 (196)
+|.+||.+|+.+.+.. .........+++|++||++++++++|+|+||+|+|.+. .++ +|+++++++||++|||
T Consensus 181 ~f~~ye~~k~~l~~~~--~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~gly 258 (303)
T 2lck_A 181 ELVTYDLIKDTLLKAN--LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFY 258 (303)
T ss_dssp HHHHHHHHHHTTTTTT--SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHH
T ss_pred HHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhh
Confidence 9999999999887642 12233678899999999999999999999999999975 688 9999999999999999
Q ss_pred cchhHHHHHHHhhhceeeeecC
Q psy10185 175 QGFVPRMLKRTLMSAISWTIFE 196 (196)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~ye 196 (196)
||+.++++|.+|+++++|.+||
T Consensus 259 rG~~~~~~r~~p~~~i~f~~ye 280 (303)
T 2lck_A 259 KGFMPSFLRLGSWNVVMFVTYE 280 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999997
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.7e-38 Score=249.39 Aligned_cols=174 Identities=24% Similarity=0.409 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHHHHHhhhcChHHHHHHHHHcCCCC-----CCCCCcHHHHHHHHHHhhchhhhhcchhhhHHHHhcch
Q psy10185 23 SPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSK-----AFHYDSLRQALVHIFRTEGLKGLWSGTVATLVRDAPYS 97 (196)
Q Consensus 23 ~~~~~~~~~g~~a~~~~~~v~~Pld~vk~~~q~~~~~-----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 97 (196)
.+.+..+++|++||+++.++++|+|++|+|+|++... ...|++.++++++++++||++|||||+.++++++++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 4677889999999999999999999999999997521 34689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhC-CCCCCCCCC-chhHHHHHHHhHHHHhHhhhcchHHHHHHhHhhcc---------CCc-hhhhhHH
Q psy10185 98 GLHFMFYTQAKSFK-PTGLNETTP-GYVLFQLACGGAAGATATLVTQPADIIKTRIQLTC---------QSP-ATSSLKY 165 (196)
Q Consensus 98 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~g~~a~~~~~~~~~P~~~ik~r~~~~~---------~~~-~~~~~i~ 165 (196)
+++|.+||.+|+.+ ......... ......+++|++||++++++++|+|+||+|+|.+. .+. +++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999953 332111111 12577899999999999999999999999999873 578 9999999
Q ss_pred HhccccccccchhHHHHHHHhhhceeeeecC
Q psy10185 166 ADYGVLGFVQGFVPRMLKRTLMSAISWTIFE 196 (196)
Q Consensus 166 ~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye 196 (196)
++||++|||||+.++++|.+|+++++|.+||
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye 195 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYD 195 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-37 Score=245.49 Aligned_cols=168 Identities=23% Similarity=0.372 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcChHHHHHHHHHcCCCC---CCCCCcHHHHHHHHHHhhchhhhhcchhhhHHHHhcchhHH
Q psy10185 24 PILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSK---AFHYDSLRQALVHIFRTEGLKGLWSGTVATLVRDAPYSGLH 100 (196)
Q Consensus 24 ~~~~~~~~g~~a~~~~~~v~~Pld~vk~~~q~~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 100 (196)
+....+++|++||+++.++++|+|+||+|+|++... ...|++.++++++|+++||++|||||+.+++++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 456789999999999999999999999999997522 34689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCchhHHHHHHHhHHHHhHhhhcchHHHHHHhHhhcc---------CCc-hhhhhHHHhccc
Q psy10185 101 FMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATATLVTQPADIIKTRIQLTC---------QSP-ATSSLKYADYGV 170 (196)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~~~ik~r~~~~~---------~~~-~~~~~i~~~~G~ 170 (196)
|.+||.+|+.+.+. ........+++|.+|+++++++++|+|+||+|+|.+. .++ +|+++++++||+
T Consensus 191 f~~ye~~k~~~~~~----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~ 266 (297)
T 1okc_A 191 FGVYDTAKGMLPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGP 266 (297)
T ss_dssp HHHHHHHHHSSCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhccC----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCc
Confidence 99999999977543 2233677889999999999999999999999999864 578 999999999999
Q ss_pred cccccchhHHHHHHHhhhceeeeecC
Q psy10185 171 LGFVQGFVPRMLKRTLMSAISWTIFE 196 (196)
Q Consensus 171 ~gly~G~~~~~~~~~~~~~~~~~~ye 196 (196)
+|||||+.++++|. +.++++|.+||
T Consensus 267 ~glyrG~~~~~~r~-~~~~~~f~~ye 291 (297)
T 1okc_A 267 KAFFKGAWSNVLRG-MGGAFVLVLYD 291 (297)
T ss_dssp GGGGTTHHHHHHHH-HHHHHHHHHHH
T ss_pred CeEecchHHHHHhh-ccceeeehHHH
Confidence 99999999999996 56788999987
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.5e-37 Score=243.37 Aligned_cols=166 Identities=25% Similarity=0.441 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhhhcChHHHHHHHHHcCCCC--------CCCCCcHHHHHHHHHHhhchhhhhcchhhhHHHHhcchhH
Q psy10185 28 ALLSGSISGTVSTILLQPLDVIKTRLQSNHSK--------AFHYDSLRQALVHIFRTEGLKGLWSGTVATLVRDAPYSGL 99 (196)
Q Consensus 28 ~~~~g~~a~~~~~~v~~Pld~vk~~~q~~~~~--------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 99 (196)
.+++|++||+++.+++||+|++|+|+|++... ...|++.++++++|+++||+++||||+.++++++++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999997642 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCchhHHHHHHHhHHHHhHhhhcchHHHHHHhHhhcc--------CCc-hhhhhHHHhccc
Q psy10185 100 HFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATATLVTQPADIIKTRIQLTC--------QSP-ATSSLKYADYGV 170 (196)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~~~ik~r~~~~~--------~~~-~~~~~i~~~~G~ 170 (196)
+|.+||.+|+.+.+.. . .......+++|.+||+++.++++|+|++|+|+|.+. .+. +++++++++||+
T Consensus 84 ~f~~ye~~k~~~~~~~--~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS--E-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp TTTHHHHHHHHHSCCC--S-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCC--c-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 9999999999876541 1 234788999999999999999999999999999875 578 999999999999
Q ss_pred cccccchhHHHHHHHhhhceeeeecC
Q psy10185 171 LGFVQGFVPRMLKRTLMSAISWTIFE 196 (196)
Q Consensus 171 ~gly~G~~~~~~~~~~~~~~~~~~ye 196 (196)
+|||||+.++++|.+|+++++|.+||
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye 186 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYD 186 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986
No 5
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=18.35 E-value=1.2e+02 Score=17.30 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHhhchhhhhcchhhhH
Q psy10185 65 SLRQALVHIFRTEGLKGLWSGTVATL 90 (196)
Q Consensus 65 ~~~~~~~~i~~~~G~~gly~G~~~~~ 90 (196)
...-.+++|.+.+|+..+=.|+-..+
T Consensus 3 klrlaikeicktdgipnikwgmyiaf 28 (82)
T 3fbl_A 3 KLRLAIKEICKTDGIPNIKWGMYIAF 28 (82)
T ss_dssp HHHHHHHHHHHHTTCCGGGHHHHHHH
T ss_pred hHHHHHHHHHccCCCCcchhHHHHHH
Confidence 34557889999999877665554443
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=17.10 E-value=20 Score=20.40 Aligned_cols=20 Identities=20% Similarity=0.560 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHhhchhhhh
Q psy10185 64 DSLRQALVHIFRTEGLKGLW 83 (196)
Q Consensus 64 ~~~~~~~~~i~~~~G~~gly 83 (196)
++..+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35667788888888887775
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.11 E-value=1.1e+02 Score=18.35 Aligned_cols=61 Identities=13% Similarity=0.290 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHHHHhhch----hhhhcchhhhHHHHhcchhHHHHHHHHHHhhCCCCCCCCCCchhHHHHHHHhHHHHhH
Q psy10185 62 HYDSLRQALVHIFRTEGL----KGLWSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATA 137 (196)
Q Consensus 62 ~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~ 137 (196)
++.+.-+-+..++.+.|+ |.+|+|++....|. +.+. ...+.+.+++-|.-+-.++
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvara-------------lnr~--------g~gpalvnminglkayyis 65 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA-------------LNRL--------GGGPALVNMINGLKAYYIS 65 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH-------------HHHH--------CSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH-------------HHhc--------CCchHHHHHHhhhhHhhhH
Confidence 455666666667777775 66888887766543 1221 1122555666666666666
Q ss_pred hhhcch
Q psy10185 138 TLVTQP 143 (196)
Q Consensus 138 ~~~~~P 143 (196)
.+-.+|
T Consensus 66 afnanp 71 (100)
T 3f2e_A 66 AFNANP 71 (100)
T ss_dssp HHCCCH
T ss_pred hhcCCc
Confidence 665555
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.43 E-value=1.2e+02 Score=23.15 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=28.9
Q ss_pred HhHhhhcchHHHHHHhHhhccCCchhhhhHHHhccccccccchhHHHHHHHhh
Q psy10185 135 ATATLVTQPADIIKTRIQLTCQSPATSSLKYADYGVLGFVQGFVPRMLKRTLM 187 (196)
Q Consensus 135 ~~~~~~~~P~~~ik~r~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~ 187 (196)
..+++=-+|||.+|-.+++.-+....+++.+.++|+ |+-...+-+|-.+.
T Consensus 273 qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~GL---Fk~it~~~~rg~~~ 322 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEGL---FKIITSNTLRGASR 322 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSCS---EEECC---------
T ss_pred eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcCc---eEEEecccccCCcc
Confidence 456778899999887776544444778888888864 55445554544443
No 9
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=10.32 E-value=1.6e+02 Score=13.05 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=11.5
Q ss_pred HHHHHHhhchhhhhcchhhhH
Q psy10185 70 LVHIFRTEGLKGLWSGTVATL 90 (196)
Q Consensus 70 ~~~i~~~~G~~gly~G~~~~~ 90 (196)
+++|++ -|+..+-+|..+..
T Consensus 2 lkeifk-aglgslvkgiaahv 21 (26)
T 2l5r_A 2 LKEIFK-AGLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHH-HhHHHHHHHHHHHH
Confidence 345554 46666777765544
No 10
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=9.21 E-value=99 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCCCCCCCcHHHHHHHH
Q psy10185 46 LDVIKTRLQSNHSKAFHYDSLRQALVHI 73 (196)
Q Consensus 46 ld~vk~~~q~~~~~~~~~~~~~~~~~~i 73 (196)
++.||.|.|.+ ...|..+.++++..
T Consensus 17 vnkVK~rF~~~---p~~Y~~FL~IL~~y 41 (89)
T 1g1e_B 17 VNKIKNRFQGQ---PDIYKAFLEILHTY 41 (89)
T ss_dssp HHHHHHHTTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC---hHHHHHHHHHHHHH
Confidence 56788888864 34678888888764
Done!