RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10185
(196 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 96.9 bits (242), Expect = 2e-26
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 22 RSPILHALLSGSISGTVSTILLQPLDVIKTRLQSN-HSKAFHYDSLRQALVHIFRTEGLK 80
L +LL+G I+G ++ + PLDV+KTRLQS+ + Y + I++ EG++
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIR 61
Query: 81 GLWSGTVATLVRDAPYSGLHFMFYTQAKSF 110
GL+ G + L+R AP + ++F Y K
Sbjct: 62 GLYKGLLPNLLRVAPAAAIYFGTYETLKKL 91
Score = 61.5 bits (150), Expect = 8e-13
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 120 PGYVLFQLACGGAAGATATLVTQPADIIKTRIQLTCQSPAT------SSLK--YADYGVL 171
P L L GG AGA A VT P D++KTR+Q + + K Y + G+
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIR 61
Query: 172 GFVQGFVPRMLKRTLMSAISWTIFE 196
G +G +P +L+ +AI + +E
Sbjct: 62 GLYKGLLPNLLRVAPAAAIYFGTYE 86
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 53.4 bits (128), Expect = 9e-09
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 26 LHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAFHYDSLRQALVHIFRTEGLKGLWSG 85
H L++G++SG + +L P+D IKT +Q+ S +F D +K L+SG
Sbjct: 4 FHNLVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSF-SD--------------IKKLYSG 48
Query: 86 TVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATATLVTQPAD 145
+ TLV P S + FY +K T E L+ L A TA +V P +
Sbjct: 49 ILPTLVGTVPASAFFYCFYELSKKLL-TEYRENISKTNLY-LISTSIAEITACIVRLPFE 106
Query: 146 IIKTRIQLTCQSPATSSLK 164
I+K +Q+ S S LK
Sbjct: 107 IVKQNMQV---SGNISVLK 122
Score = 45.7 bits (108), Expect = 4e-06
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 29 LLSGSISGTVSTILLQPLDVIKTRLQSNHSKAFHYDSLRQALVHIFRTEGLKG-LWSGTV 87
L+S SI+ + I+ P +++K +Q + + S+ + + I + EGL L
Sbjct: 88 LISTSIAEITACIVRLPFEIVKQNMQVSGNI-----SVLKTIYEITQREGLPSFLGKSYF 142
Query: 88 ATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLFQLA-CGGAAGATATLVTQPADI 146
+VR+ P+ + + + K + + Y A CGG AG A +T P D+
Sbjct: 143 VMIVREIPFDCIQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDV 202
Query: 147 IKTRIQLTCQSPATSSLKYADYGVLGFVQG 176
IK+R + +S + + A+ G L F +G
Sbjct: 203 IKSRQIIYGKSYIETVTEIAEEGYLTFYKG 232
Score = 29.9 bits (67), Expect = 0.83
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 24 PILHALLSGSISGTVSTILLQPLDVIKTR 52
P + + + G ++G ++ L P+DVIK+R
Sbjct: 178 PSITSAICGGLAGGIAGFLTTPVDVIKSR 206
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 49.4 bits (118), Expect = 2e-07
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 30 LSGSISGTVSTILLQPLDVIKTRLQSNHS-------KAFHYDSLRQALVHIFRTEGLKGL 82
L G IS +S + P++ +K +Q+ S K Y + + + +G+ L
Sbjct: 12 LMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSL 71
Query: 83 WSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLF--QLACGGAAGATATLV 140
W G A ++R P +F F K+ P N+ T + F + GG AGA++ L+
Sbjct: 72 WRGNTANVIRYFPTQAFNFAFKDYFKNMFPK-YNQKTDFWKFFGVNILSGGLAGASSLLI 130
Query: 141 TQPADIIKTRI 151
P D +TR+
Sbjct: 131 VYPLDFARTRL 141
Score = 48.6 bits (116), Expect = 5e-07
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 29 LLSGSISGTVSTILLQPLDVIKTRLQSNHSK--AFHYDSLRQALVHIFRTEGLKGLWSGT 86
+LSG ++G S +++ PLD +TRL S+ K + L L+ I + G L+ G
Sbjct: 117 ILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGF 176
Query: 87 VATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATATLVTQPADI 146
++ Y G +F Y AK+ T +L++ A A L++ P D
Sbjct: 177 GVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTN---ILYKWAVAQTVTILAGLISYPFDT 233
Query: 147 IKTRIQLTCQSPATSSLKYA 166
++ R+ + A S ++Y
Sbjct: 234 VRRRMMMMSGRKAKSEIQYT 253
Score = 29.7 bits (67), Expect = 0.75
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 29 LLSGSISGTVST---ILLQPLDVIKTRLQ----SNHSKAFHYDSLRQALVHIFRTEGLKG 81
L +++ TV+ ++ P D ++ R+ Y I + EGL G
Sbjct: 211 LYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGG 270
Query: 82 LWSGTVATLVRDAPYSGLHFMFYTQAKSF 110
+ G A ++R A L +FY + +
Sbjct: 271 FFKGAWANVLRGAG-GALVLVFYDELQKL 298
>gnl|CDD|177456 PHA02674, PHA02674, ORF107 virion morphogenesis; Provisional.
Length = 60
Score = 27.8 bits (61), Expect = 0.94
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 115 LNETTPGYVLFQLA--CGGAAGATATLVTQPADIIKTRIQL 153
LNE ++L ++A CGG A A A + D++ RI +
Sbjct: 5 LNEAALLHMLTRIAQICGGDAAAAAAAIKMLMDLVNERIMI 45
>gnl|CDD|204764 pfam11865, DUF3385, Domain of unknown function (DUF3385). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 160 to 172 amino acids in length. This domain is
found associated with pfam00454, pfam02260, pfam02985,
pfam02259 and pfam08771.
Length = 160
Score = 28.8 bits (65), Expect = 1.3
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 62 HYDSLRQALVHIFRTEGLK 80
H+ ++ QA+++IF++ GLK
Sbjct: 103 HHTAVVQAIMNIFKSLGLK 121
>gnl|CDD|212574 cd11701, DHR2_DOCK8, Dock Homology Region 2, a GEF domain, of Class
C Dedicator of Cytokinesis 8. Dock8, also called
Zizimin-related 3 (Zir3), is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates the small GTPases Rac1 and Cdc42 by exchanging
bound GDP for free GTP. Dock8 is highly expressed in the
immune system and it regulates T and B cell numbers and
functions. It plays essential roles in humoral immune
responses and the proper formation of B cell
immunological synapses. Dock8 deficiency is a primary
immune deficiency that results in extreme susceptibility
to cutaneous viral infections, elevated IgE levels, and
eosinophilia. It was originally described as an
autosomal recessive form of hyper IgE syndrome
(AR-HIES). DOCK proteins are divided into four classes
(A-D) based on sequence similarity and domain
architecture; class C includes Dock6, 7 and 8. All DOCKs
contain two homology domains: the DHR-1 (Dock homology
region-1), also called CZH1 (CED-5, Dock180, and
MBC-zizimin homology 1), and DHR-2 (also called CZH2 or
Docker). The DHR-1 domain binds
phosphatidylinositol-3,4,5-triphosphate. This alignment
model represents the DHR-2 domain of Dock8, which
contains the catalytic GEF activity for Rac and/or
Cdc42.
Length = 422
Score = 29.2 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 12 IGDSVHYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAFHYDSLR 67
+ ++ H PP + +L +L GS+ TV+ L+ V + ++ H++ LR
Sbjct: 324 LAEATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLR 379
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily. Tif1
(transcription intermediary factor 1) is a member of
the tripartite motif (TRIM) protein family, which is
characterized by a particular domain architecture. It
functions by recruiting coactivators and/or
corepressors to modulate transcription. Vertebrate
Tif1-gamma, also labeled E3 ubiquitin-protein ligase
TRIM33, plays a role in the control of hematopoiesis.
Its homologue in Xenopus laevis, Ectodermin, has been
shown to function in germ-layer specification and
control of cell growth during embryogenesis.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 109
Score = 27.3 bits (61), Expect = 2.4
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 46 LDVIKTRLQSNHSKAFHYDSLRQ 68
L +I+ +LQ HY S +
Sbjct: 46 LSLIRKKLQPKSP--QHYSSPEE 66
>gnl|CDD|223966 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit
[Energy production and conversion].
Length = 332
Score = 28.1 bits (63), Expect = 2.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 138 TLVTQPADIIKTRIQLTCQSPATSSLKYA 166
+ T P ++++T SP S+LK A
Sbjct: 108 VVATTPEELLETAGSKYTISPNLSALKEA 136
>gnl|CDD|202599 pfam03340, Pox_Rif, Poxvirus rifampicin resistance protein.
Length = 541
Score = 28.1 bits (63), Expect = 3.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 13 GDSVHYS--PPRSPILHALLSGSISGTVSTIL-LQPLDVIK-TRLQSNHSKAFHYDSLR 67
G+ V YS P S I + LLSG + G P+ + T L +N S+ S+R
Sbjct: 441 GNEVIYSENSPISNIYNYLLSGCLYGVRKLRFNFTPIIFFEPTTLIANVSRGKDKLSVR 499
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 27.7 bits (62), Expect = 5.0
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 125 FQLACGGAA-----GATATLVTQPAD---------IIKTRIQLTCQSPATSSLKYADYGV 170
F L C AA GAT+ VT D +I ++ A +L+Y D
Sbjct: 79 FGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPT 138
Query: 171 LGF 173
LGF
Sbjct: 139 LGF 141
>gnl|CDD|232900 TIGR00272, DPH2, diphthamide biosynthesis protein 2. This protein
has been shown in Saccharomyces cerevisiae to be one of
several required for the modification of a particular
histidine residue of translation elongation factor 2 to
diphthamide. This modified site can then become the
target for ADP-ribosylation by diphtheria toxin [Protein
fate, Protein modification and repair].
Length = 496
Score = 27.2 bits (60), Expect = 6.5
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 14 DSVHYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAFHYDSLRQALVHI 73
+ V + S LH + + +ST+ Q + + L + + F R LVH+
Sbjct: 220 NLVLFGQHSSEDLHLIHLTTYQ-DLSTVF-QFVPIFDPILPESVTGPFPSLRRRYKLVHV 277
Query: 74 FRTEGLKGLWSGTV 87
R G G+ GT+
Sbjct: 278 ARDAGCIGIVVGTL 291
>gnl|CDD|221098 pfam11376, DUF3179, Protein of unknown function (DUF3179). This
family of proteins has no known function.
Length = 261
Score = 26.8 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 59 KAFHYDSLRQALVHIFRTEG--LKGLWSGTVATLVRDAP 95
AF D LR A V F G L ++ A+ V D
Sbjct: 199 VAFPLDELRAAGVINFEVGGKGLVIVYDAGQASRVVDGQ 237
>gnl|CDD|224700 COG1786, COG1786, Swiveling domain associated with predicted
aconitase [Energy production and conversion].
Length = 131
Score = 26.2 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 112 PTGLNETTPGYVLFQLACGGAAGATATLVTQPADII 147
P G T YVL++LA G A A A + + I+
Sbjct: 57 PGGRGSTVGSYVLYELAKNGRAPA-AIVNEEAEPIL 91
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 27.2 bits (60), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 101 FMFYTQAKSFKPTGLNETTPGYVLF 125
F+ YT + KP G+ TT GY+++
Sbjct: 279 FLLYTSGSTGKPKGVLHTTGGYMVY 303
>gnl|CDD|235937 PRK07111, PRK07111, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 735
Score = 26.8 bits (60), Expect = 7.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 115 LNETTPGYVLFQLACGGAA 133
NE P Y LF+LAC AA
Sbjct: 373 YNEEDPNYDLFKLACRVAA 391
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,681,315
Number of extensions: 852586
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 23
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)