RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10185
(196 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 128 bits (325), Expect = 7e-37
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 18/193 (9%)
Query: 17 HYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAF---HYDSLRQALVHI 73
+ L SG +G S + PLD +TRL ++ K + L + I
Sbjct: 104 RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163
Query: 74 FRTEGLKGLWSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAA 133
F+++GL+GL+ G ++ Y +F Y AK L + +++
Sbjct: 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM----LPDPKNVHIIVSWMIAQTV 219
Query: 134 GATATLVTQPADIIKTRIQLTCQSPA-----TSSLK-----YADYGVLGFVQGFVPRMLK 183
A A LV+ P D ++ R+ + T ++ D G F +G +L
Sbjct: 220 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL- 278
Query: 184 RTLMSAISWTIFE 196
R + A +++
Sbjct: 279 RGMGGAFVLVLYD 291
Score = 121 bits (305), Expect = 5e-34
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 21/192 (10%)
Query: 24 PILHALLSGSISGTVSTILLQPLDVIKTRLQSNHS-----KAFHYDSLRQALVHIFRTEG 78
L L+G ++ +S + P++ +K LQ H+ Y + +V I + +G
Sbjct: 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 65
Query: 79 LKGLWSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLF--QLACGGAAGAT 136
W G +A ++R P L+F F + K G++ + F LA GGAAGAT
Sbjct: 66 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 125
Query: 137 ATLVTQPADIIKTRIQLTCQSPATSSLK------------YADYGVLGFVQGFVPRMLKR 184
+ P D +TR L ++ + + G+ G QGF +
Sbjct: 126 SLCFVYPLDFARTR--LAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 185 TLMSAISWTIFE 196
+ A + +++
Sbjct: 184 IIYRAAYFGVYD 195
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 117 bits (296), Expect = 1e-32
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 13/192 (6%)
Query: 14 DSVHYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAF--HYDSLRQALV 71
+ I LL+GS +G ++ + QP DV+K R Q+ Y S +A
Sbjct: 93 QFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYK 152
Query: 72 HIFRTEGLKGLWSGTVATLVRDAPYSGLHFMFYTQAKSF--KPTGLNETTPGYVLFQLAC 129
I R EG++GLW GT + R+A + + Y K K + + P +
Sbjct: 153 TIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH----FTS 208
Query: 130 GGAAGATATLVTQPADIIKTRIQLTCQSPATSSLK-----YADYGVLGFVQGFVPRMLKR 184
AG T++ P D++KTR + S+ G F +GF+P L+
Sbjct: 209 AFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRL 268
Query: 185 TLMSAISWTIFE 196
+ + + +E
Sbjct: 269 GSWNVVMFVTYE 280
Score = 108 bits (272), Expect = 4e-29
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 20/178 (11%)
Query: 29 LLSGSISGTVSTILLQPLDVIKTRLQ--------SNHSKAFHYDSLRQALVHIFRTEGLK 80
L + ++ ++ PLD K RLQ + + Y + ++ + RTEG +
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 81 GLWSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLFQLACGGAAGATATLV 140
L++G VA L R ++ + Y K F G G +L G GA A V
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS---RLLAGSTTGALAVAV 121
Query: 141 TQPADIIKTRIQLTCQSPATSSLK---------YADYGVLGFVQGFVPRMLKRTLMSA 189
QP D++K R Q ++ + + G+ G +G P + + +++
Sbjct: 122 AQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Score = 79.3 bits (196), Expect = 4e-18
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 23 SPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAFHYDSLRQALVHIFRTEGLKGL 82
H S +G +T++ P+DV+KTR + S Y S + + R EG +
Sbjct: 201 DLPCH-FTSAFGAGFCTTVIASPVDVVKTRYMN--SALGQYHSAGHCALTMLRKEGPRAF 257
Query: 83 WSGTVATLVRDAPYSGLHFMFYTQAKSF 110
+ G + + +R ++ + F+ Y Q K
Sbjct: 258 YKGFMPSFLRLGSWNVVMFVTYEQLKRA 285
Score = 50.0 bits (120), Expect = 9e-08
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 126 QLACGGAAGATATLVTQPADIIKTRIQLTCQSPATSSLKYADY---------------GV 170
+ G A A L+T P D K R+Q+ +S + G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 171 LGFVQGFVPRMLKRTLMSAISWTIFE 196
G V + ++ +++ +++
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYD 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.004
Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 62/147 (42%)
Query: 63 YDS-------LRQALVHIFRTEGLKGLWSGTVATLVRDAPYS-GLHF------------- 101
Y + +A H T G +S + +V + P + +HF
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYG----FS--ILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 102 -MFYTQA--------KSFKPTGLNETTPGYVLFQLACGGAAGA-TATLVTQPADIIKTRI 151
M + K FK +NE + Y F+ G +AT TQPA
Sbjct: 1690 AMIFETIVDGKLKTEKIFK--EINEHSTSYT-FR----SEKGLLSATQFTQPA------- 1735
Query: 152 QLTCQSPATSSLKYADYGVL---GFVQ 175
LT A + L G +
Sbjct: 1736 -LT----LME---KAAFEDLKSKGLIP 1754
Score = 34.6 bits (79), Expect = 0.019
Identities = 46/227 (20%), Positives = 68/227 (29%), Gaps = 90/227 (39%)
Query: 26 LHALLSGSISGTVSTILLQPLDVIKT----RLQSNHSKAFHYDS--LRQA------LVHI 73
+HAL + + T L++ ++IK R+ + +S R LV I
Sbjct: 101 IHALAA-KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 74 F----RTEG----LKGLWSGTVATLVRDAPYSGLHFMFYT---------QAKSFKPTGLN 116
F T+ L+ L+ T LV D + F T A+ GLN
Sbjct: 160 FGGQGNTDDYFEELRDLYQ-TYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 117 --------ETTPG--YV-----------LFQLACGGAAGATATLVTQPADIIKTRIQLTC 155
TP Y+ + QLA +T
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---------------------YVVTA 253
Query: 156 Q----SPAT--SSLKYADYGVLGFVQGFVPRMLKRTLMSAISWTIFE 196
+ +P S LK G G QG V + + SW F
Sbjct: 254 KLLGFTPGELRSYLK----GATGHSQGLVTAVA---IAETDSWESFF 293
Score = 28.5 bits (63), Expect = 1.6
Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 57/189 (30%)
Query: 46 LDVIKTRLQSNHSKAFHYDSLRQALVHIFRTEGLKG-----LWSGTVATLVRDAPYSGLH 100
L + + ++ + F L L F L+G L A L+++ + +
Sbjct: 65 LGYVSSLVEPSKVGQFD-QVLNLCLTE-FENCYLEGNDIHAL----AAKLLQENDTTLVK 118
Query: 101 FMF----YTQAKSFKPTGLNETTPGYVLFQLACGGAA---------GAT----------- 136
Y A+ ++ + LF+ G A G T
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 137 ---ATLVTQPADIIKTRIQLTCQSPATSSLKYADYGVLGFVQGF-VPRMLKRT------- 185
LV D+IK T ++L F QG + L+
Sbjct: 178 QTYHVLV---GDLIK-FSAETLSELIRTTLDAEKV----FTQGLNILEWLENPSNTPDKD 229
Query: 186 -LMSA-ISW 192
L+S IS
Sbjct: 230 YLLSIPISC 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.008
Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 58/166 (34%)
Query: 41 ILLQPLDVIKTRLQSNHSKAFHYDSLRQALVHIFRTEGLKGLWSGTVATLVRDAPYSGLH 100
IL D + D + I E + + ++ SG
Sbjct: 21 ILSVFEDAFVDNFDCKDVQ----DMPKS----ILSKEEIDHI-------IMSKDAVSGTL 65
Query: 101 FMFYT-------QAKSFKPTGLNETTPGYVLFQLACGGAAGATATLVTQPADIIKTRIQL 153
+F+T + F L Y + + I+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLR---INY----------------------KFLMSPIKT 100
Query: 154 TCQSPATSSLKYADY------GVLGFVQGFVPRM-----LKRTLMS 188
+ P+ + Y + F + V R+ L++ L+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Score = 33.3 bits (75), Expect = 0.045
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 32/112 (28%)
Query: 1 SNIACPVVWINIGDSVHYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKA 60
+ + W+N+ + + P + +L L LL +D T + S
Sbjct: 178 CKMDFKIFWLNLK---NCNSPET-VLEMLQK----------LLYQIDPNWTSRSDHSSNI 223
Query: 61 -FHYDSLRQALVHIFRTEG-------LKGLWSGTVA--------TLV--RDA 94
S++ L + +++ L + + L+ R
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.35
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 18 YSPPRSPILHALLSGSISGTV 38
Y+ +P AL +I T+
Sbjct: 32 YADDSAP---AL---AIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,859,365
Number of extensions: 152143
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 12
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)